From a85fd44d588bca82d3bab8651c9465c21102a48c Mon Sep 17 00:00:00 2001
From: Ravnoor Gill <ravnoor@gmail.com>
Date: Tue, 19 Sep 2023 16:00:41 -0400
Subject: [PATCH] revert to previous config

---
 .github/workflows/test-inference-pipeline.yml | 13 ++++++-------
 1 file changed, 6 insertions(+), 7 deletions(-)

diff --git a/.github/workflows/test-inference-pipeline.yml b/.github/workflows/test-inference-pipeline.yml
index 7f2b9cb..f728745 100644
--- a/.github/workflows/test-inference-pipeline.yml
+++ b/.github/workflows/test-inference-pipeline.yml
@@ -33,14 +33,13 @@ jobs:
 
       - name: Download openneuro.org dataset to test the inference pipeline # https://openneuro.org/datasets/ds004199/versions/1.0.5
         run: |
-          mkdir -p ~/io/${CI_TESTING_PATIENT_ID}
+          PATIENT_ID=sub-00055
+          BASE_URL=https://s3.amazonaws.com/openneuro.org/ds004199/${PATIENT_ID}/anat
+          mkdir -p ~/io/${PATIENT_ID}
           echo "retrieving single-patient multimodal dataset.."
-          wget ${BASE_URL}/${CI_TESTING_PATIENT_ID}_acq-sag111_T1w.nii.gz\?versionId\=IKGWDiLR7B7ls2yPVyycJo.6R1Sqhujf -O ~/io/${CI_TESTING_PATIENT_ID}/t1.nii.gz
-          wget ${BASE_URL}/${CI_TESTING_PATIENT_ID}_acq-tse3dvfl_FLAIR.nii.gz\?versionId\=HmzYoUuYkdbyd8jkpdJjVkZydRHNSqUX -O ~/io/${CI_TESTING_PATIENT_ID}/flair.nii.gz
-          wget ${BASE_URL}/${CI_TESTING_PATIENT_ID}_acq-tse3dvfl_FLAIR_roi.nii.gz\?versionId\=ulmEU3nb8WCvGwcwTbkcdNSVr07PMPQN -O ~/io/${CI_TESTING_PATIENT_ID}/label.nii.gz
-        env:
-          CI_TESTING_PATIENT_ID: "sub-00055"
-          BASE_URL: "https://s3.amazonaws.com/openneuro.org/ds004199/${CI_TESTING_PATIENT_ID}/anat"
+          wget ${BASE_URL}/${PATIENT_ID}_acq-sag111_T1w.nii.gz\?versionId\=IKGWDiLR7B7ls2yPVyycJo.6R1Sqhujf -O ~/io/sub-00055/t1.nii.gz
+          wget ${BASE_URL}/${PATIENT_ID}_acq-tse3dvfl_FLAIR.nii.gz\?versionId\=HmzYoUuYkdbyd8jkpdJjVkZydRHNSqUX -O ~/io/sub-00055/flair.nii.gz
+          wget ${BASE_URL}/${PATIENT_ID}_acq-tse3dvfl_FLAIR_roi.nii.gz\?versionId\=ulmEU3nb8WCvGwcwTbkcdNSVr07PMPQN -O ~/io/sub-00055/label.nii.gz
 
       - name: Run inference for deepFCD
         run: |