7.improve CIworkflow #23
Workflow file for this run
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name: conda-env-create-and-pytest | |
on: [pull_request] | |
jobs: | |
build-linux: | |
runs-on: ubuntu-latest | |
strategy: | |
max-parallel: 5 | |
steps: | |
- uses: actions/checkout@v4\ | |
- name: Set up Python 3.10 | |
uses: actions/setup-python@v5 | |
with: | |
python-version: '3.10' | |
- name: Add conda to system path | |
run: | | |
# $CONDA is an environment variable pointing to the root of the miniconda directory | |
echo $CONDA/bin >> $GITHUB_PATH | |
- name: Create catalogbuilder environment | |
run: | | |
# create environment catalogbuilder will be installed into | |
conda env create -f environment.yml --name catalogbuilder | |
# put conda env binaries in GITHUB_PATH | |
echo $CONDA/envs/catalogbuilder/bin >> $GITHUB_PATH | |
# install catalogbuilder | |
$CONDA/envs/catalogbuilder/bin/python -m pip install --prefix $CONDA/envs/catalogbuilder/bin . | |
- name: Run pytest in catalogbuilder environment | |
run: | | |
which python | |
python --version | |
$CONDA/envs/catalogbuilder/bin/python --version | |
# which pytest | |
$CONDA/envs/catalogbuilder/bin/pytest | |
- name: Make sample data | |
run: | | |
which python | |
python tests/make_sample_data.py | |
- name: Generate catalog | |
run: | | |
which python | |
python catalogbuilder/scripts/gen_intake_gfdl.py archive/am5/am5/am5f3b1r0/c96L65_am5f3b1r0_pdclim1850F/gfdl.ncrc5-deploy-prod-openmp/pp gfdl_autotest | |
- name: Generate catalog with yaml | |
run: | | |
which python | |
python catalogbuilder/scripts/gen_intake_gfdl.py --config tests/test_config.yaml | |
- name: upload-artifacts | |
uses: actions/upload-artifact@v4 | |
with: | |
name: workflow-artifacts1 | |
path: | | |
gfdl_autotest.csv | |
gfdl_autotest.json | |
cats/gfdl_autotest_from_yaml.csv | |
cats/gfdl_autotest_from_yaml.json | |
- name: Download all workflow run artifacts | |
uses: actions/download-artifact@v4 | |
- name: Run pytest with downloaded artifacts | |
run: | | |
$CONDA/envs/catalogbuilder/bin/pytest -v --runxfail | |
- name: Test for completeness | |
run: | | |
which python | |
python catalogbuilder/scripts/test_catalog.py -tf gfdl_autotest.json catalogbuilder/cats/gfdl_template.json | |
python catalogbuilder/scripts/test_catalog.py -tf catalogbuilder/cats/gfdl_autotest_from_yaml.json |