diff --git a/algorithm/atmosphere/fv3jedi_fv3inc_lgetkf.yaml.j2 b/algorithm/atmosphere/fv3jedi_fv3inc_lgetkf.yaml.j2 index 723abc6..576a133 100644 --- a/algorithm/atmosphere/fv3jedi_fv3inc_lgetkf.yaml.j2 +++ b/algorithm/atmosphere/fv3jedi_fv3inc_lgetkf.yaml.j2 @@ -1,6 +1,6 @@ variable change: variable change name: Model2GeoVaLs - input variables: &bkgvars [ua,va,t,ps,sphum,ice_wat,liq_wat,o3mr,surface_geopotential_height] + input variables: &bkgvars [ua,va,t,ps,sphum,ice_wat,liq_wat,o3mr,hgtsfc] output variables: &fv3incrvars [ua,va,t,sphum,ice_wat,liq_wat,o3mr,delp,delz] jedi increment variables: [ua,va,t,ps,sphum,ice_wat,liq_wat,o3mr] fv3 increment variables: *fv3incrvars diff --git a/algorithm/atmosphere/fv3jedi_fv3inc_variational.yaml.j2 b/algorithm/atmosphere/fv3jedi_fv3inc_variational.yaml.j2 index b795b06..dd60ebb 100644 --- a/algorithm/atmosphere/fv3jedi_fv3inc_variational.yaml.j2 +++ b/algorithm/atmosphere/fv3jedi_fv3inc_variational.yaml.j2 @@ -1,6 +1,6 @@ variable change: variable change name: Model2GeoVaLs - input variables: &bkgvars [ua,va,t,ps,sphum,ice_wat,liq_wat,o3mr,surface_geopotential_height] + input variables: &bkgvars [ua,va,t,ps,sphum,ice_wat,liq_wat,o3mr,hgtsfc] output variables: &fv3incrvars [ua,va,t,sphum,ice_wat,liq_wat,o3mr,delp,delz] jedi increment variables: [ua,va,t,ps,sphum,ice_wat,liq_wat,o3mr] fv3 increment variables: *fv3incrvars diff --git a/algorithm/marine/soca_2cice_antarctic.yaml.j2 b/algorithm/marine/soca_2cice_antarctic.yaml.j2 index 73fa367..c740c53 100644 --- a/algorithm/marine/soca_2cice_antarctic.yaml.j2 +++ b/algorithm/marine/soca_2cice_antarctic.yaml.j2 @@ -26,7 +26,7 @@ variable change: tstep: PT1H cice output: restart: {{ ice_rst }} - output variables: [tocn, socn, hocn, cicen, hicen, hsnon] + output variables: [sea_water_potential_temperature, sea_water_salinity, sea_water_cell_thickness, sea_ice_area_fraction, sea_ice_thickness, sea_ice_snow_thickness] states: - input: @@ -35,7 +35,7 @@ states: ocn_filename: {{ ocn_ana }} ice_filename: {{ ice_ana }} date: '{{ fcst_begin }}' - state variables: [tocn, socn, hocn, cicen, hicen, hsnon] + state variables: [sea_water_potential_temperature, sea_water_salinity, sea_water_cell_thickness, sea_ice_area_fraction, sea_ice_thickness, sea_ice_snow_thickness] output: datadir: Data exp: soca2cice diff --git a/algorithm/marine/soca_2cice_arctic.yaml.j2 b/algorithm/marine/soca_2cice_arctic.yaml.j2 index e686eea..178b8fa 100644 --- a/algorithm/marine/soca_2cice_arctic.yaml.j2 +++ b/algorithm/marine/soca_2cice_arctic.yaml.j2 @@ -23,7 +23,7 @@ variable change: tstep: PT1H cice output: restart: {{ ice_rst }} - output variables: [tocn, socn, hocn, cicen, hicen, hsnon] + output variables: [sea_water_potential_temperature, sea_water_salinity, sea_water_cell_thickness, sea_ice_area_fraction, sea_ice_thickness, sea_ice_snow_thickness] states: - input: @@ -32,7 +32,7 @@ states: ocn_filename: {{ ocn_ana }} ice_filename: {{ ice_ana }} date: '{{ fcst_begin }}' - state variables: [tocn, socn, hocn, cicen, hicen, hsnon] + state variables: [sea_water_potential_temperature, sea_water_salinity, sea_water_cell_thickness, sea_ice_area_fraction, sea_ice_thickness, sea_ice_snow_thickness] output: datadir: Data exp: soca2cice diff --git a/algorithm/marine/soca_diagb.yaml.j2 b/algorithm/marine/soca_diagb.yaml.j2 index 7d8e0d6..02633ac 100644 --- a/algorithm/marine/soca_diagb.yaml.j2 +++ b/algorithm/marine/soca_diagb.yaml.j2 @@ -18,7 +18,7 @@ background error: type: incr variables: - name: [tocn, socn, uocn, vocn, hocn, ssh, cicen, hicen, hsnon, mom6_mld] + name: [sea_water_potential_temperature, sea_water_salinity, eastward_sea_water_velocity, northward_sea_water_velocity, sea_water_cell_thickness, sea_surface_height_above_geoid, sea_ice_area_fraction, sea_ice_thickness, sea_ice_snow_thickness, mom6_mld] rescale: 2.0 # rescales the filtered std. dev. by "rescale" min sst: 0.0 # Added to sst bkg. err. diff --git a/algorithm/marine/soca_parameters_diffusion_hz.yaml.j2 b/algorithm/marine/soca_parameters_diffusion_hz.yaml.j2 index d313e46..c79d469 100644 --- a/algorithm/marine/soca_parameters_diffusion_hz.yaml.j2 +++ b/algorithm/marine/soca_parameters_diffusion_hz.yaml.j2 @@ -8,7 +8,7 @@ background: ocn_filename: MOM.res.nc ice_filename: cice.res.nc date: '{{ marine_window_end_iso }}' - state variables: [ssh] + state variables: [sea_surface_height_above_geoid] background error: covariance model: SABER @@ -26,7 +26,7 @@ background error: date: '{{ marine_window_end_iso }}' basename: ./ ocn_filename: ocn.cor_rh.incr.0001-01-01T00:00:00Z.nc - model variable: ssh + model variable: sea_surface_height_above_geoid write: filepath: ./staticb/hz_ocean diff --git a/algorithm/marine/soca_parameters_diffusion_vt.yaml.j2 b/algorithm/marine/soca_parameters_diffusion_vt.yaml.j2 index 07f56de..8e23f2d 100644 --- a/algorithm/marine/soca_parameters_diffusion_vt.yaml.j2 +++ b/algorithm/marine/soca_parameters_diffusion_vt.yaml.j2 @@ -8,7 +8,7 @@ background: ocn_filename: MOM.res.nc ice_filename: cice.res.nc date: '{{ marine_window_middle_iso }}' - state variables: [tocn] + state variables: [sea_water_potential_temperature] background error: covariance model: SABER @@ -29,6 +29,6 @@ background error: date: '{{ marine_window_middle_iso }}' basename: ./ ocn_filename: vt_scales.nc - model variable: tocn + model variable: sea_water_potential_temperature write: filepath: ./staticb/vt_ocean diff --git a/algorithm/marine/soca_setcorscales.yaml.j2 b/algorithm/marine/soca_setcorscales.yaml.j2 index b7b80a7..c1a1ec8 100644 --- a/algorithm/marine/soca_setcorscales.yaml.j2 +++ b/algorithm/marine/soca_setcorscales.yaml.j2 @@ -4,11 +4,11 @@ resolution: date: "0001-01-01T00:00:00Z" -corr variables: [ssh] +corr variables: [sea_surface_height_above_geoid] scales: vert layers: 5 # in units of layer - ssh: + sea_surface_height_above_geoid: rossby mult: 1.00 min grid mult: 2.0 diff --git a/algorithm/marine/socaincr2mom6.yaml.j2 b/algorithm/marine/socaincr2mom6.yaml.j2 index ececb6b..deaec76 100644 --- a/algorithm/marine/socaincr2mom6.yaml.j2 +++ b/algorithm/marine/socaincr2mom6.yaml.j2 @@ -4,9 +4,9 @@ geometry: date: '{{ marine_window_begin }}' -layers variable: [hocn] +layers variable: [sea_water_cell_thickness] -increment variables: [tocn, socn, uocn, vocn, ssh] +increment variables: [sea_water_potential_temperature, sea_water_salinity, eastward_sea_water_velocity, northward_sea_water_velocity, sea_surface_height_above_geoid] vertical geometry: date: '{{ marine_window_begin }}' diff --git a/model/atmosphere/atmosphere_background.yaml.j2 b/model/atmosphere/atmosphere_background.yaml.j2 index 580fc68..24a45f4 100644 --- a/model/atmosphere/atmosphere_background.yaml.j2 +++ b/model/atmosphere/atmosphere_background.yaml.j2 @@ -5,6 +5,6 @@ ufs soil nlev: 4 ufs fields split by level: [smc,stc] datetime: "{{ atmosphere_background_time_iso }}" filenames: [ {{ atmosphere_variational_history_prefix }}cubed_sphere_grid_atmf006.nc, {{ atmosphere_variational_history_prefix }}cubed_sphere_grid_sfcf006.nc ] -state variables: [ua,va,t,delp,ps,sphum,ice_wat,liq_wat,o3mr,surface_geopotential_height, - slmsk,sheleg,tsea,vtype,stype,vfrac,stc,smc,snwdphMeters, +state variables: [ua,va,t,delp,ps,sphum,ice_wat,liq_wat,o3mr,hgtsfc, + slmsk,sheleg,tmpsfc,vtype,stype,vfrac,stc,smc,snwdphMeters, u_srf,v_srf,f10m] diff --git a/model/atmosphere/atmosphere_background_ensemble.yaml.j2 b/model/atmosphere/atmosphere_background_ensemble.yaml.j2 index 16b980e..2167885 100644 --- a/model/atmosphere/atmosphere_background_ensemble.yaml.j2 +++ b/model/atmosphere/atmosphere_background_ensemble.yaml.j2 @@ -6,8 +6,8 @@ members from template: provider: ufs ufs soil nlev: 4 ufs fields split by level: [smc,stc] - state variables: [ua,va,t,delz,delp,ps,sphum,ice_wat,liq_wat,o3mr,surface_geopotential_height, - slmsk,sheleg,tsea,vtype,stype,vfrac,stc,smc,snwdphMeters, + state variables: [ua,va,t,delz,delp,ps,sphum,ice_wat,liq_wat,o3mr,hgtsfc, + slmsk,sheleg,tmpsfc,vtype,stype,vfrac,stc,smc,snwdphMeters, u_srf,v_srf,f10m] datapath: {{ atmosphere_background_ensemble_path }} filename is datetime templated: true diff --git a/model/atmosphere/atmosphere_background_error_hybrid_gsibec_bump.yaml.j2 b/model/atmosphere/atmosphere_background_error_hybrid_gsibec_bump.yaml.j2 index e5b06aa..5880917 100644 --- a/model/atmosphere/atmosphere_background_error_hybrid_gsibec_bump.yaml.j2 +++ b/model/atmosphere/atmosphere_background_error_hybrid_gsibec_bump.yaml.j2 @@ -21,8 +21,8 @@ components: debugging mode: false linear variable change: linear variable change name: Control2Analysis - input variables: [eastward_wind,northward_wind,air_temperature,surface_pressure, - specific_humidity,cloud_liquid_ice,cloud_liquid_water, + input variables: [eastward_wind,northward_wind,air_temperature,air_pressure_at_surface, + water_vapor_mixing_ratio_wrt_moist_air,cloud_liquid_ice,cloud_liquid_water, mole_fraction_of_ozone_in_air] output variables: [ua,va,t,ps,sphum,ice_wat,liq_wat,o3mr] weight: @@ -45,8 +45,8 @@ components: localization method: SABER saber central block: saber block name: BUMP_NICAS - active variables: [eastward_wind,northward_wind,air_temperature,surface_pressure, - specific_humidity,cloud_liquid_ice,cloud_liquid_water, + active variables: [eastward_wind,northward_wind,air_temperature,air_pressure_at_surface, + water_vapor_mixing_ratio_wrt_moist_air,cloud_liquid_ice,cloud_liquid_water, ozone_mass_mixing_ratio ] read: general: @@ -198,8 +198,8 @@ components: value: 0.3 linear variable change: linear variable change name: Control2Analysis - input variables: [eastward_wind,northward_wind,air_temperature,surface_pressure, - specific_humidity,cloud_liquid_ice,cloud_liquid_water, + input variables: [eastward_wind,northward_wind,air_temperature,air_pressure_at_surface, + water_vapor_mixing_ratio_wrt_moist_air,cloud_liquid_ice,cloud_liquid_water, ozone_mass_mixing_ratio ] output variables: [ua,va,t,ps,sphum,ice_wat,liq_wat,o3mr] weight: diff --git a/model/atmosphere/atmosphere_background_error_static_gsibec.yaml.j2 b/model/atmosphere/atmosphere_background_error_static_gsibec.yaml.j2 index 242ce4f..1133aaf 100644 --- a/model/atmosphere/atmosphere_background_error_static_gsibec.yaml.j2 +++ b/model/atmosphere/atmosphere_background_error_static_gsibec.yaml.j2 @@ -19,7 +19,7 @@ saber outer blocks: debugging mode: false linear variable change: linear variable change name: Control2Analysis - input variables: [eastward_wind,northward_wind,air_temperature,surface_pressure, - specific_humidity,cloud_liquid_ice,cloud_liquid_water, + input variables: [eastward_wind,northward_wind,air_temperature,air_pressure_at_surface, + water_vapor_mixing_ratio_wrt_moist_air,cloud_liquid_ice,cloud_liquid_water, mole_fraction_of_ozone_in_air] output variables: [ua,va,t,ps,sphum,ice_wat,liq_wat,o3mr] diff --git a/model/marine/marine_background.yaml.j2 b/model/marine/marine_background.yaml.j2 index d0047e8..205f583 100644 --- a/model/marine/marine_background.yaml.j2 +++ b/model/marine/marine_background.yaml.j2 @@ -3,4 +3,4 @@ basename: {{ marine_background_path}} ocn_filename: MOM.res.nc ice_filename: cice.res.nc date: "{{ marine_background_time }}" -state variables: [cicen, hicen, hsnon, socn, tocn, uocn, vocn, ssh, hocn, mld, layer_depth] +state variables: [sea_ice_area_fraction, sea_ice_thickness, sea_ice_snow_thickness, sea_water_salinity, sea_water_potential_temperature, eastward_sea_water_velocity, northward_sea_water_velocity, sea_surface_height_above_geoid, sea_water_cell_thickness, ocean_mixed_layer_thickness, sea_water_depth] diff --git a/model/marine/marine_background_error_static_diffusion.yaml.j2 b/model/marine/marine_background_error_static_diffusion.yaml.j2 index bb5de61..0c57790 100644 --- a/model/marine/marine_background_error_static_diffusion.yaml.j2 +++ b/model/marine/marine_background_error_static_diffusion.yaml.j2 @@ -3,13 +3,13 @@ saber central block: saber block name: diffusion read: groups: - - variables: [tocn, socn, ssh] + - variables: [sea_water_potential_temperature, sea_water_salinity, sea_surface_height_above_geoid] horizontal: filepath: ./staticb/hz_ocean vertical: levels: {{marine_vt_levels}} filepath: ./staticb/vt_ocean - - variables: [cicen] + - variables: [sea_ice_area_fraction] horizontal: filepath: ./staticb/hz_ice @@ -24,7 +24,7 @@ saber outer blocks: read_from_file: 3 linear variable change: - input variables: [cicen, hicen, hsnon, socn, tocn, uocn, vocn, ssh] - output variables: [cicen, hicen, hsnon, socn, tocn, uocn, vocn, ssh] + input variables: [sea_ice_area_fraction, sea_ice_thickness, sea_ice_snow_thickness, sea_water_salinity, sea_water_potential_temperature, eastward_sea_water_velocity, northward_sea_water_velocity, sea_surface_height_above_geoid] + output variables: [sea_ice_area_fraction, sea_ice_thickness, sea_ice_snow_thickness, sea_water_salinity, sea_water_potential_temperature, eastward_sea_water_velocity, northward_sea_water_velocity, sea_surface_height_above_geoid] linear variable changes: - linear variable change name: BalanceSOCA diff --git a/observations/atmosphere-lgetkf/ascatw.ascat_metop-b.yaml.j2 b/observations/atmosphere-lgetkf/ascatw.ascat_metop-b.yaml.j2 index 35a8a06..831fb80 100644 --- a/observations/atmosphere-lgetkf/ascatw.ascat_metop-b.yaml.j2 +++ b/observations/atmosphere-lgetkf/ascatw.ascat_metop-b.yaml.j2 @@ -110,7 +110,7 @@ - variable: ObsType/windEastward is_in: 290 # - variable: GeoVaLs/surface_temperature - - variable: GeoVaLs/surface_temperature_where_land + - variable: GeoVaLs/skin_temperature_at_surface_where_land maxvalue: 273. action: name: reject diff --git a/observations/atmosphere-lgetkf/conventional_ps.yaml.j2 b/observations/atmosphere-lgetkf/conventional_ps.yaml.j2 index f094ca9..49f99a5 100644 --- a/observations/atmosphere-lgetkf/conventional_ps.yaml.j2 +++ b/observations/atmosphere-lgetkf/conventional_ps.yaml.j2 @@ -27,7 +27,7 @@ - name: stationPressure da_psfc_scheme: GSI station_altitude: height - geovar_sfc_geomz: surface_altitude + geovar_sfc_geomz: height_above_mean_sea_level_at_surface geovar_geomz: geopotential_height # Linear Observation Operator @@ -264,7 +264,7 @@ function: name: ObsFunction/ObsErrorFactorSfcPressure options: - geovar_sfc_geomz: surface_altitude + geovar_sfc_geomz: height_above_mean_sea_level_at_surface geovar_geomz: geopotential_height station_altitude: height diff --git a/observations/atmosphere-lgetkf/satwnd.abi_goes-16.yaml.j2 b/observations/atmosphere-lgetkf/satwnd.abi_goes-16.yaml.j2 index e5543ba..d3b214c 100644 --- a/observations/atmosphere-lgetkf/satwnd.abi_goes-16.yaml.j2 +++ b/observations/atmosphere-lgetkf/satwnd.abi_goes-16.yaml.j2 @@ -448,7 +448,7 @@ - variable: name: ObsType/windEastward is_in: 247 - reference: GeoVaLs/surface_pressure + reference: GeoVaLs/air_pressure_at_surface value: MetaData/pressure maxvalue: -11000. # within 110 hPa above surface pressure, negative p-diff action: diff --git a/observations/atmosphere/ascatw.ascat_metop-b.yaml.j2 b/observations/atmosphere/ascatw.ascat_metop-b.yaml.j2 index bb3d5de..88ee802 100644 --- a/observations/atmosphere/ascatw.ascat_metop-b.yaml.j2 +++ b/observations/atmosphere/ascatw.ascat_metop-b.yaml.j2 @@ -107,7 +107,7 @@ - variable: ObsType/windEastward is_in: 290 # - variable: GeoVaLs/surface_temperature - - variable: GeoVaLs/surface_temperature_where_land + - variable: GeoVaLs/skin_temperature_at_surface_where_land maxvalue: 273. action: name: reject diff --git a/observations/atmosphere/conventional_ps.yaml.j2 b/observations/atmosphere/conventional_ps.yaml.j2 index d8d90f9..1ecd386 100644 --- a/observations/atmosphere/conventional_ps.yaml.j2 +++ b/observations/atmosphere/conventional_ps.yaml.j2 @@ -24,7 +24,7 @@ - name: stationPressure da_psfc_scheme: GSI station_altitude: height - geovar_sfc_geomz: surface_altitude + geovar_sfc_geomz: height_above_mean_sea_level_at_surface geovar_geomz: geopotential_height # Linear Observation Operator @@ -261,7 +261,7 @@ function: name: ObsFunction/ObsErrorFactorSfcPressure options: - geovar_sfc_geomz: surface_altitude + geovar_sfc_geomz: height_above_mean_sea_level_at_surface geovar_geomz: geopotential_height station_altitude: height diff --git a/observations/atmosphere/satwnd.abi_goes-16.yaml.j2 b/observations/atmosphere/satwnd.abi_goes-16.yaml.j2 index e01f17c..94b0458 100644 --- a/observations/atmosphere/satwnd.abi_goes-16.yaml.j2 +++ b/observations/atmosphere/satwnd.abi_goes-16.yaml.j2 @@ -445,7 +445,7 @@ - variable: name: ObsType/windEastward is_in: 247 - reference: GeoVaLs/surface_pressure + reference: GeoVaLs/air_pressure_at_surface value: MetaData/pressure maxvalue: -11000. # within 110 hPa above surface pressure, negative p-diff action: diff --git a/observations/atmosphere/scatwind_ascat_metop-a.yaml.j2 b/observations/atmosphere/scatwind_ascat_metop-a.yaml.j2 index 0c1a745..774fef9 100644 --- a/observations/atmosphere/scatwind_ascat_metop-a.yaml.j2 +++ b/observations/atmosphere/scatwind_ascat_metop-a.yaml.j2 @@ -107,7 +107,7 @@ - variable: ObsType/windEastward is_in: 290 # - variable: GeoVaLs/surface_temperature - - variable: GeoVaLs/surface_temperature_where_land + - variable: GeoVaLs/skin_temperature_at_surface_where_land maxvalue: 273. action: name: reject diff --git a/observations/atmosphere/sondes.yaml.j2 b/observations/atmosphere/sondes.yaml.j2 index aff438b..224c814 100644 --- a/observations/atmosphere/sondes.yaml.j2 +++ b/observations/atmosphere/sondes.yaml.j2 @@ -34,7 +34,7 @@ - name: specificHumidity - name: SfcPCorrected da_psfc_scheme: GSI - geovar_sfc_geomz: surface_geopotential_height + geovar_sfc_geomz: geopotential_height_at_surface geovar_geomz: geopotential_height variables: - name: stationPressure @@ -106,7 +106,7 @@ error_min: 100.0 # 1 mb error_max: 300.0 # 3 mb geovar_geomz: geopotential_height - geovar_sfc_geomz: surface_geopotential_height + geovar_sfc_geomz: geopotential_height_at_surface # # Gross error check with (O - B) / ObsError greater than threshold - filter: Background Check