diff --git a/R/Metadata_Table.R b/R/Metadata_Table.R index 45d6873..7844672 100644 --- a/R/Metadata_Table.R +++ b/R/Metadata_Table.R @@ -22,11 +22,11 @@ #' #' # Return dimensional reductions #' metadata <- MetadataTable(SO = seurat.object, return.cell.embeddings = TRUE) -#' umap_coordinates <- metadata %>% dplyr::select(Barcode, seurat_clusters, contains("UMAP")) +#' umap.coordinates <- metadata %>% dplyr::select(Barcode, seurat_clusters, contains("UMAP")) #' #' ## Plot #' library(ggplot2) -#' ggplot(umap_coordinates, aes(x = UMAP_1, y = UMAP_2, colour = seurat_clusters)) + +#' ggplot(umap.coordinates, aes(x = UMAP_1, y = UMAP_2, colour = seurat_clusters)) + #' geom_point(size = 0.1) + theme_bw() #' } #' diff --git a/tests/testthat/test-Metadata_Table.R b/tests/testthat/test-Metadata_Table.R index 151b71e..3d0176c 100644 --- a/tests/testthat/test-Metadata_Table.R +++ b/tests/testthat/test-Metadata_Table.R @@ -1,9 +1,11 @@ -# load data -seurat.object <-readRDS(test_path("fixtures", "SO_moduleScore.rds")) + # run tests test_that("reductions are returned", { + # load data + seurat.object <-readRDS(test_path("fixtures", "SO_moduleScore.rds")) + metadata <- MetadataTable(SO = seurat.object, return.cell.embeddings = TRUE) @@ -16,6 +18,9 @@ test_that("reductions are returned", { test_that("function returns correct class", { + # load data + seurat.object <-readRDS(test_path("fixtures", "SO_moduleScore.rds")) + metadata <- MetadataTable(SO = seurat.object, return.cell.embeddings = TRUE)