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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(diffExpr)
export(dimReduct)
export(filtering)
export(geomxNorm)
export(heatMap)
export(qcProc)
export(spatialDeconvolution)
export(studyDesign)
export(violinPlot)
import(Biobase)
import(NanoStringNCTools)
import(ggplot2)
importFrom(Biobase,assayDataElement)
importFrom(Biobase,exprs)
importFrom(Biobase,fData)
importFrom(Biobase,featureData)
importFrom(Biobase,pData)
importFrom(Biobase,protocolData)
importFrom(BiocGenerics,annotation)
importFrom(BiocGenerics,colnames)
importFrom(BiocGenerics,rbind)
importFrom(BiocGenerics,rownames)
importFrom(ComplexHeatmap,pheatmap)
importFrom(GeomxTools,aggregateCounts)
importFrom(GeomxTools,mixedModelDE)
importFrom(GeomxTools,ngeoMean)
importFrom(GeomxTools,normalize)
importFrom(GeomxTools,readNanoStringGeoMxSet)
importFrom(GeomxTools,setBioProbeQCFlags)
importFrom(GeomxTools,setSegmentQCFlags)
importFrom(GeomxTools,shiftCountsOne)
importFrom(NanoStringNCTools,assayDataApply)
importFrom(NanoStringNCTools,esBy)
importFrom(NanoStringNCTools,negativeControlSubset)
importFrom(NanoStringNCTools,sData)
importFrom(Rtsne,Rtsne)
importFrom(SpatialDecon,create_profile_matrix)
importFrom(SpatialDecon,derive_GeoMx_background)
importFrom(SpatialDecon,spatialdecon)
importFrom(cowplot,plot_grid)
importFrom(dplyr,arrange)
importFrom(dplyr,count)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,pull)
importFrom(dplyr,rename)
importFrom(dplyr,select)
importFrom(ggforce,gather_set_data)
importFrom(ggforce,geom_parallel_sets)
importFrom(ggforce,geom_parallel_sets_axes)
importFrom(ggforce,geom_parallel_sets_labels)
importFrom(ggplot2,aes)
importFrom(ggplot2,aes_string)
importFrom(ggplot2,annotate)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_text)
importFrom(ggplot2,expansion)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_abline)
importFrom(ggplot2,geom_histogram)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_vline)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,guides)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_fill_brewer)
importFrom(ggplot2,scale_x_continuous)
importFrom(ggplot2,scale_x_discrete)
importFrom(ggplot2,scale_y_continuous)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,theme_classic)
importFrom(grid,gpar)
importFrom(grid,grid.draw)
importFrom(grid,grid.newpage)
importFrom(grid,grobHeight)
importFrom(grid,textGrob)
importFrom(gridExtra,arrangeGrob)
importFrom(gridExtra,grid.arrange)
importFrom(gridExtra,tableGrob)
importFrom(gridExtra,ttheme_default)
importFrom(gtable,gtable_add_grob)
importFrom(gtable,gtable_add_rows)
importFrom(knitr,kable)
importFrom(magrittr,"%>%")
importFrom(parallel,detectCores)
importFrom(patchwork,guide_area)
importFrom(patchwork,patchworkGrob)
importFrom(patchwork,plot_annotation)
importFrom(patchwork,plot_layout)
importFrom(patchwork,wrap_elements)
importFrom(patchwork,wrap_plots)
importFrom(reshape2,melt)
importFrom(scales,percent)
importFrom(stats,as.formula)
importFrom(stats,p.adjust)
importFrom(stats,prcomp)
importFrom(stats,quantile)
importFrom(tibble,rownames_to_column)
importFrom(tidyr,pivot_wider)
importFrom(umap,umap)
importFrom(utils,head)