PIDConfig.pm

##
## Parameters for back-end data servers for CGAP
##

package PIDConfig;
require Exporter;
 
@ISA     = qw(Exporter);
@EXPORT  = qw(

  $CGAP_SCHEMA
  $CGAP_SCHEMA2
  $CMAP_SCHEMA
  $RFLP_SCHEMA

  DB_USER
  DB_PASS
  DB_INSTANCE

  GENE_SERVER_PORT
  CYT_SERVER_PORT
  BLAST_QUERY_SERVER_PORT
  LIBRARY_SERVER_PORT
  GL_SERVER_PORT
  PATHWAY_SERVER_PORT
  MICROARRAY_SERVER_PORT

  GXS_SERVER_PORT

  INIT_DATA_HOME

  INIT_SAGE_DATA_HOME

  KEGG_DIR

  KEGG_ARCFILE
  KEGG_NODEFILE
  KEGG_GENEFILE
  KEGG_PATHFILE
  KEGG_NAMEFILE
  KEGG_COORDFILE
  KEGG_ENZYME
  KEGG_COMPOUND

  HS_GL_DATA
  MM_GL_DATA
  CACHE_ROOT
  CACHE_ID_FILE
  HS_GXS_DATA
  MM_GXS_DATA
  HS_UG_BLAST
  MM_UG_BLAST

  NCI60_STATS
  NCI60_VIEW

  SAGE_STATS
  SAGE_VIEW

  SAGE_GROUP_RAW
  SAGE_GROUP_STATS
  SAGE_GROUP_VIEW

  NOVARTIS_RAW
  NOVARTIS_STATS
  NOVARTIS_VIEW

  SAGEFREQ

  GXS_CACHE_PREFIX
  XP_CACHE_PREFIX
  GL_CACHE_PREFIX
  MICROARRAY_CACHE_PREFIX
  LICR_CACHE_PREFIX
  SDGED_CACHE_PREFIX

  BASE
  IMG_DIR

  SAFE_IPS
);

use DB_SCHEMAConfig;

  $ENV{'ORACLE_HOME'} = "/oracle/productt";


## Global variables for database schema names

$CGAP_SCHEMA = "pid";
$CGAP_SCHEMA2 = "";
$CMAP_SCHEMA = "cmap";
$RFLP_SCHEMA = "rflp";

use constant DB_USER         => "userid";
use constant DB_PASS         => "password";
use constant DB_INSTANCE     => "db";

use constant GXS_SERVER_PORT         => "8005";

use constant GENE_SERVER_PORT        => "0000";
use constant LIBRARY_SERVER_PORT     => "0000";

use constant CYT_SERVER_PORT         => "8002";
use constant BLAST_QUERY_SERVER_PORT => "8003";
use constant GL_SERVER_PORT          => "8006";
use constant PATHWAY_SERVER_PORT     => "8007";
use constant MICROARRAY_SERVER_PORT  => "8008";

use constant INIT_DATA_HOME          => "/CGAP/data/";
use constant KEGG_DATA_HOME          => "/CGAP/data/";
use constant INIT_SAGE_DATA_HOME     => "/SAGE/data/";

use constant HS_GL_DATA              => INIT_DATA_HOME . "Hs_gl.dat";
use constant MM_GL_DATA              => INIT_DATA_HOME . "Mm_gl.dat";
## use constant CACHE_ROOT              => INIT_DATA_HOME . "cache/cache/";
use constant CACHE_ROOT              => INIT_DATA_HOME . "cache/";
## use constant CACHE_ROOT              => "/tmp/cache/";
use constant CACHE_ID_FILE           => CACHE_ROOT     . "cache_id";

use constant KEGG_ARCFILE   => KEGG_DATA_HOME . "Arc.dat";
use constant KEGG_NODEFILE  => KEGG_DATA_HOME . "Node.dat";
use constant KEGG_GENEFILE  => KEGG_DATA_HOME . "Gene_Product.dat";
use constant KEGG_PATHFILE  => KEGG_DATA_HOME . "Pathway.dat";
use constant KEGG_NAMEFILE  => KEGG_DATA_HOME . "Pathway_name.dat";
use constant KEGG_COORDFILE => KEGG_DATA_HOME . "KeggCoords.dat";
use constant KEGG_ENZYME    => KEGG_DATA_HOME . "KeggEnzymes.dat";
use constant KEGG_COMPOUND  => KEGG_DATA_HOME . "entry_table";

use constant GXS_CACHE_PREFIX        => "GXS";
use constant XP_CACHE_PREFIX         => "XP";
use constant GL_CACHE_PREFIX         => "GL";
use constant MICROARRAY_CACHE_PREFIX => "MC";
use constant LICR_CACHE_PREFIX       => "LICR";
use constant SDGED_CACHE_PREFIX      => "SDGED";

use constant HS_GXS_DATA        => INIT_DATA_HOME . "Hs_gxs.dat";
use constant MM_GXS_DATA        => INIT_DATA_HOME . "Mm_gxs.dat";

## use constant HS_UG_BLAST        => INIT_DATA_HOME . "Hs.seq.all";
## use constant MM_UG_BLAST        => INIT_DATA_HOME . "Mm.seq.all";

use constant HS_UG_BLAST        => INIT_DATA_HOME . "Hs.seq.all_for_blast";
use constant MM_UG_BLAST        => INIT_DATA_HOME . "Mm.seq.all_for_blast";

use constant NCI60_RAW       => INIT_DATA_HOME . "discover.raw";
use constant NCI60_STATS     => INIT_DATA_HOME . "discover.stats";
use constant NCI60_VIEW      => INIT_DATA_HOME . "discover.view";

use constant SAGE_RAW           => INIT_DATA_HOME . "sage.raw";
use constant SAGE_STATS         => INIT_DATA_HOME . "sage.stats";
use constant SAGE_VIEW          => INIT_DATA_HOME . "sage.view";

use constant SAGE_GROUP_RAW     => INIT_DATA_HOME . "sage_group.raw";
use constant SAGE_GROUP_STATS   => INIT_DATA_HOME . "sage_group.stats";
use constant SAGE_GROUP_VIEW    => INIT_DATA_HOME . "sage_group.view";

use constant NOVARTIS_RAW       => INIT_DATA_HOME . "novartis.raw";
use constant NOVARTIS_STATS     => INIT_DATA_HOME . "novartis.stats";
use constant NOVARTIS_VIEW      => INIT_DATA_HOME . "novartis.view";

use constant SAGEFREQ           => INIT_SAGE_DATA_HOME . "sagefreq.dat";

# Perl equivalents of Zope dtml-var's BASE and IMG_DIR
use constant BASE     => "";
use constant IMG_DIR  => "/images";
##use constant BASE     => "/CGAP";
##use constant IMG_DIR  => "/CGAP/images";

use constant KEGG_DIR => "/KEGG";

use constant SAFE_IPS =>
  "127.0.0.1," .           ## localhost
   "xxx.xxx.xxx.xxx" ;        ## 

######################################################################
1;