diff --git a/AGR/agr.yaml b/AGR/agr.yaml index af12762d..ed657465 100644 --- a/AGR/agr.yaml +++ b/AGR/agr.yaml @@ -16,7 +16,7 @@ info: component: KP team: - Service Provider - biolink-version: "3.5.3" + biolink-version: "4.1.6" servers: - description: Encrypted Production server url: https://biothings.ncats.io/agr diff --git a/CTD/smartapi.yaml b/CTD/smartapi.yaml index 815c1761..5962a145 100644 --- a/CTD/smartapi.yaml +++ b/CTD/smartapi.yaml @@ -11,7 +11,7 @@ info: url: https://ctdbase.org/help/contact.go x-translator: infores: "infores:ctd" - biolink-version: "3.5.0" + biolink-version: "4.1.6" component: KP team: - Service Provider diff --git a/DISEASES/smartapi.yaml b/DISEASES/smartapi.yaml index 37eeab7b..7f6083ad 100644 --- a/DISEASES/smartapi.yaml +++ b/DISEASES/smartapi.yaml @@ -16,7 +16,7 @@ info: component: KP team: - Service Provider - biolink-version: "3.5.0" + biolink-version: "4.1.6" servers: - description: Encrypted Production server url: https://biothings.ncats.io/DISEASES diff --git a/EBIgene2phenotype/smartapi.yaml b/EBIgene2phenotype/smartapi.yaml index 1537263b..37683e66 100644 --- a/EBIgene2phenotype/smartapi.yaml +++ b/EBIgene2phenotype/smartapi.yaml @@ -16,7 +16,7 @@ info: component: KP team: - Service Provider - biolink-version: "3.5.0" + biolink-version: "4.1.6" servers: - description: Encrypted Production server url: https://biothings.ncats.io/ebigene2phenotype diff --git a/MGIgene2phenotype/smartapi.yaml b/MGIgene2phenotype/smartapi.yaml index 94876799..391ccfa9 100644 --- a/MGIgene2phenotype/smartapi.yaml +++ b/MGIgene2phenotype/smartapi.yaml @@ -19,7 +19,7 @@ info: component: KP team: - Service Provider - biolink-version: "3.5.0" + biolink-version: "4.1.6" servers: - description: Encrypted Production server url: https://biothings.ncats.io/mgigene2phenotype diff --git a/bindingdb/smartapi.yaml b/bindingdb/smartapi.yaml index 73d37e9b..7242ebe9 100644 --- a/bindingdb/smartapi.yaml +++ b/bindingdb/smartapi.yaml @@ -16,7 +16,7 @@ info: component: KP team: - Service Provider - biolink-version: "3.5.0" + biolink-version: "4.1.6" servers: - description: Encrypted Production server url: https://biothings.ncats.io/bindingdb diff --git a/biolink/openapi.yml b/biolink/openapi.yml index d95525de..25d16007 100644 --- a/biolink/openapi.yml +++ b/biolink/openapi.yml @@ -19,7 +19,7 @@ info: team: - "Service Provider" - "Standards Reference Implementation Team" - biolink-version: "3.5.3" + biolink-version: "4.1.6" servers: - description: Production server url: https://api-v3.monarchinitiative.org diff --git a/bioplanet/bioplanet-pathway-disease.yaml b/bioplanet/bioplanet-pathway-disease.yaml index 9f921cc6..7a9026aa 100644 --- a/bioplanet/bioplanet-pathway-disease.yaml +++ b/bioplanet/bioplanet-pathway-disease.yaml @@ -16,7 +16,7 @@ info: component: KP team: - Service Provider - biolink-version: "3.5.0" + biolink-version: "4.1.6" servers: - description: Encrypted Production server url: https://biothings.ncats.io/bioplanet_pathway_disease diff --git a/bioplanet/bioplanet-pathway-gene.yaml b/bioplanet/bioplanet-pathway-gene.yaml index 29cf0d7b..631a390f 100644 --- a/bioplanet/bioplanet-pathway-gene.yaml +++ b/bioplanet/bioplanet-pathway-gene.yaml @@ -17,7 +17,7 @@ info: component: KP team: - Service Provider - biolink-version: "3.5.0" + biolink-version: "4.1.6" servers: - description: Encrypted Production server url: https://biothings.ncats.io/bioplanet_pathway_gene diff --git a/biothings_explorer/service-provider-trapi.yaml b/biothings_explorer/service-provider-trapi.yaml index e31c6406..d0459bd5 100644 --- a/biothings_explorer/service-provider-trapi.yaml +++ b/biothings_explorer/service-provider-trapi.yaml @@ -18,7 +18,7 @@ info: component: KP team: - Service Provider - biolink-version: "3.5.3" + biolink-version: "4.1.6" infores: "infores:service-provider-trapi" x-trapi: version: 1.4.0 diff --git a/biothings_explorer/smartapi.yaml b/biothings_explorer/smartapi.yaml index 66033876..0bfa6239 100644 --- a/biothings_explorer/smartapi.yaml +++ b/biothings_explorer/smartapi.yaml @@ -12,7 +12,7 @@ info: component: ARA team: - Exploring Agent - biolink-version: "3.5.3" + biolink-version: "4.1.6" infores: "infores:biothings-explorer" x-trapi: version: 1.4.0 diff --git a/biothings_foodb/smartapi.yaml b/biothings_foodb/smartapi.yaml index 0ed2a390..31560d71 100644 --- a/biothings_foodb/smartapi.yaml +++ b/biothings_foodb/smartapi.yaml @@ -16,7 +16,7 @@ info: component: KP team: - Service Provider - biolink-version: "3.5.3" + biolink-version: "4.1.6" servers: - description: Encrypted Production server url: https://biothings.ncats.io/foodb diff --git a/complexportal/smartapi.yaml b/complexportal/smartapi.yaml index be879e4a..f464ddfc 100644 --- a/complexportal/smartapi.yaml +++ b/complexportal/smartapi.yaml @@ -15,7 +15,7 @@ info: component: KP team: - Service Provider - biolink-version: "3.5.3" + biolink-version: "4.1.6" servers: - url: https://www.ebi.ac.uk/intact/complex-ws description: Production server diff --git a/ddinter/ddinter.yaml b/ddinter/ddinter.yaml index df4ba535..71888e6b 100644 --- a/ddinter/ddinter.yaml +++ b/ddinter/ddinter.yaml @@ -16,7 +16,7 @@ info: component: KP team: - Service Provider - biolink-version: "3.5.0" + biolink-version: "4.1.6" servers: - description: Encrypted Production server url: https://biothings.ncats.io/ddinter diff --git a/dgidb/openapi.yml b/dgidb/openapi.yml index 4f139168..201120c5 100644 --- a/dgidb/openapi.yml +++ b/dgidb/openapi.yml @@ -16,7 +16,7 @@ info: component: KP team: - Service Provider - biolink-version: "3.5.0" + biolink-version: "4.1.6" servers: - description: Encrypted Production server url: https://biothings.ncats.io/dgidb diff --git a/ebi_proteins/openapi.yml b/ebi_proteins/openapi.yml index e7998af5..52003476 100644 --- a/ebi_proteins/openapi.yml +++ b/ebi_proteins/openapi.yml @@ -18,7 +18,7 @@ info: component: KP team: - Service Provider - biolink-version: "3.5.0" + biolink-version: "4.1.6" servers: - url: 'https://www.ebi.ac.uk/proteins/api' x-maturity: production diff --git a/fooddata_central/smartapi.yaml b/fooddata_central/smartapi.yaml index ce2cc701..6fbcc6ea 100644 --- a/fooddata_central/smartapi.yaml +++ b/fooddata_central/smartapi.yaml @@ -17,7 +17,7 @@ info: component: KP team: - Service Provider - biolink-version: "3.5.3" + biolink-version: "4.1.6" servers: - description: Encrypted Production server url: https://biothings.ncats.io/fooddata diff --git a/go_bp/smartapi.yaml b/go_bp/smartapi.yaml index 73f1286e..2b46b43c 100644 --- a/go_bp/smartapi.yaml +++ b/go_bp/smartapi.yaml @@ -16,7 +16,7 @@ info: component: KP team: - Service Provider - biolink-version: "3.5.0" + biolink-version: "4.1.6" servers: - description: Encrypted Production server url: https://biothings.ncats.io/go_bp diff --git a/go_cc/smartapi.yaml b/go_cc/smartapi.yaml index 6fd9a6ae..52443bd2 100644 --- a/go_cc/smartapi.yaml +++ b/go_cc/smartapi.yaml @@ -16,7 +16,7 @@ info: component: KP team: - Service Provider - biolink-version: "3.5.0" + biolink-version: "4.1.6" servers: - description: Encrypted Production server url: https://biothings.ncats.io/go_cc diff --git a/go_mf/smartapi.yaml b/go_mf/smartapi.yaml index 93e1a6f9..bcd7a521 100644 --- a/go_mf/smartapi.yaml +++ b/go_mf/smartapi.yaml @@ -16,7 +16,7 @@ info: component: KP team: - Service Provider - biolink-version: "3.5.0" + biolink-version: "4.1.6" servers: - description: Encrypted Production server url: https://biothings.ncats.io/go_mf diff --git a/gtrx/gtrx.yaml b/gtrx/gtrx.yaml index 1198f155..ff963ce4 100644 --- a/gtrx/gtrx.yaml +++ b/gtrx/gtrx.yaml @@ -19,7 +19,7 @@ info: component: KP team: - Service Provider - biolink-version: "3.5.0" + biolink-version: "4.1.6" servers: - description: Encrypted Production server url: https://biothings.ncats.io/gtrx @@ -574,6 +574,7 @@ components: ## 2 potential types: ## - Disease: OMIM ID without prefixes in subject.omim ## - SmallMolecule: UNII ID without prefix in object.intervention.inxight + ## keeping predicates as treats/treated_by because these are curated, recommended interventions by experts ## 695 records total ## knowledge_level / agent_type: highly curated, see Fig.2 and Methods of https://www.nature.com/articles/s41467-022-31446-6#Sec2 disease-drug: diff --git a/hpo/smartapi.yaml b/hpo/smartapi.yaml index 697884a4..88a2879c 100644 --- a/hpo/smartapi.yaml +++ b/hpo/smartapi.yaml @@ -15,7 +15,7 @@ info: component: KP team: - Service Provider - biolink-version: "3.5.3" + biolink-version: "4.1.6" servers: - description: Encrypted Production server url: https://biothings.ncats.io/hpo diff --git a/iPTMnet/smartapi.yaml b/iPTMnet/smartapi.yaml index 3b5778f2..92ffa9f4 100644 --- a/iPTMnet/smartapi.yaml +++ b/iPTMnet/smartapi.yaml @@ -15,7 +15,7 @@ info: component: KP team: - Service Provider - biolink-version: "3.5.3" + biolink-version: "4.1.6" servers: - description: Encrypted Production server url: https://research.bioinformatics.udel.edu/iptmnet/api diff --git a/idisk/smartapi.yaml b/idisk/smartapi.yaml index 3f213d70..cf4dbde7 100644 --- a/idisk/smartapi.yaml +++ b/idisk/smartapi.yaml @@ -16,7 +16,7 @@ info: component: KP team: - Service Provider - biolink-version: "3.5.0" + biolink-version: "4.1.6" servers: - description: Encrypted Production server url: https://biothings.ncats.io/idisk @@ -773,7 +773,6 @@ components: is_effective_for: ## there are 654 records with the is_effective_for field ## most use NMCD (552), but some use MSKCC (238). Some records must have both? - ## the dietary supplement is said to treat disease/condition or may be used for it... - supportBatch: true useTemplating: true ## flag to say templating is being used below inputs: @@ -795,7 +794,8 @@ components: # fields: is_effective_for.umls,is_effective_for.source.name fields: is_effective_for.umls size: 1000 ## size limit; just in case - predicate: treats ## closest biolink predicate? + ## the dietary supplement is said to treat disease/condition or may be used for it... + predicate: applied_to_treat source: "infores:idisk" knowledge_level: knowledge_assertion agent_type: automated_agent @@ -822,7 +822,7 @@ components: parameters: fields: umls size: 1000 ## note size limit - predicate: treated_by + predicate: treatment_applications_from source: "infores:idisk" knowledge_level: knowledge_assertion agent_type: automated_agent diff --git a/innatedb/smartapi.yaml b/innatedb/smartapi.yaml index efd8c478..02297eab 100644 --- a/innatedb/smartapi.yaml +++ b/innatedb/smartapi.yaml @@ -19,7 +19,7 @@ info: component: KP team: - Service Provider - biolink-version: "3.5.3" + biolink-version: "4.1.6" servers: - description: Encrypted Production server url: https://biothings.ncats.io/innatedb diff --git a/litvar/smartapi.yaml b/litvar/smartapi.yaml index 9d9f393f..d017dd63 100644 --- a/litvar/smartapi.yaml +++ b/litvar/smartapi.yaml @@ -18,7 +18,7 @@ info: component: KP team: - Service Provider - biolink-version: "3.5.0" + biolink-version: "4.1.6" servers: - url: https://www.ncbi.nlm.nih.gov/research/bionlp/litvar/api/v1 description: Production server diff --git a/mychem.info/openapi_full.yml b/mychem.info/openapi_full.yml index 0a454e8e..0c248403 100644 --- a/mychem.info/openapi_full.yml +++ b/mychem.info/openapi_full.yml @@ -15,7 +15,7 @@ info: component: KP team: - Service Provider - biolink-version: "3.5.0" + biolink-version: "4.1.6" servers: - description: Encrypted Production server url: https://mychem.info/v1 @@ -618,8 +618,10 @@ components: x-bte-response-mapping: aeolusIndication-meddra: MEDDRA: aeolus.indications.meddra_code - aeolus-unii: + "biolink:evidence_count": aeolus.indications.count + aeolusIndication-unii: UNII: aeolus.unii + "biolink:evidence_count": aeolus.indications.count chebiXrefs-reactome: REACT: chebi.xrefs.reactome chebi: @@ -667,13 +669,14 @@ components: ## this url field will include expanded clinicaltrials (aka duplicates!) ## but is required for other references: ATC, DailyMed, FDA ref_url: chembl.drug_indications.indication_refs.url + "biolink:max_research_phase": chembl.drug_indications.max_phase_for_ind ## commenting out because data-processing / biolink-modeling issues - # max_clinical_phase_for_indication: chembl.drug_indications.max_phase_for_ind # year_first_approved: chembl.drug_indications.first_approval chembl-treats-rev: "CHEMBL.COMPOUND": chembl.molecule_chembl_id ## no prefix ref_clinicaltrials: chembl.drug_indications.indication_refs.ClinicalTrials ## no prefix ref_url: chembl.drug_indications.indication_refs.url + "biolink:max_research_phase": chembl.drug_indications.max_phase_for_ind drugcentral-bioactivity: UniProtKB: drugcentral.bioactivity.uniprot.uniprot_id ## no prefix ## commenting out because data-processing / biolink-modeling issues @@ -740,7 +743,8 @@ components: fields: aeolus.indications ## need the whole thing for jmespath to work jmespath: aeolus.indications|[?count>`20`] size: 1000 ## note size limit; added just in case - predicate: treats + ## seem to come from the drug adverse event self-reporting + predicate: applied_to_treat source: "infores:aeolus" knowledge_level: observation agent_type: manual_agent @@ -750,7 +754,7 @@ components: - qInput: "UNII:90347YTW5F" ## alfuzosin aka PUBCHEM.COMPOUND:2092 oneOutput: "MEDDRA:10004446" ## Benign prostatic hyperplasia aka MONDO:0010811 aeolusTreats-rev: - - supportBatch: true + - supportBatch: false useTemplating: true inputs: - id: MEDDRA @@ -763,14 +767,17 @@ components: - id: UNII semantic: SmallMolecule parameters: - fields: aeolus.unii ## no prefix + ## need the whole thing for jmespath to work + fields: aeolus.unii,aeolus.indications ## no prefix size: 1000 ## note size limit - predicate: treated_by + jmespath: "aeolus.indications|[?count>`20` && meddra_code=='{{ queryInputs }}']" + jmespath_exclude_empty: true + predicate: treatment_applications_from source: "infores:aeolus" knowledge_level: observation agent_type: manual_agent response_mapping: - "$ref": "#/components/x-bte-response-mapping/aeolus-unii" + "$ref": "#/components/x-bte-response-mapping/aeolusIndication-unii" testExamples: - qInput: "MEDDRA:10012378" ## Depression aka MONDO:0002050 oneOutput: "UNII:82VFR53I78" ## Aripiprazole aka PUBCHEM.COMPOUND:60795 @@ -933,7 +940,7 @@ components: chembl.drug_mechanisms.target_name size: 1000 ## note size limit; added just in case ## using the same predicate as dgidb's no-relationship-specified. - ## not using psychically_interacts_with because it's not clear that all relationships involve a physical interaction between the chem and gene product + ## not using physically_interacts_with because it's not clear that all relationships involve a physical interaction between the chem and gene product ## not using affects because that's trickier to use with the new qualifier-modeling (can't ask for Edges without any qualifiers) predicate: interacts_with source: "infores:chembl" @@ -1066,9 +1073,10 @@ components: fields: >- chembl.drug_indications.mesh_id, chembl.drug_indications.indication_refs.ClinicalTrials, - chembl.drug_indications.indication_refs.url + chembl.drug_indications.indication_refs.url, + chembl.drug_indications.max_phase_for_ind size: 1000 ## note size limit; added just in case - predicate: treats + predicate: in_clinical_trials_for source: "infores:chembl" knowledge_level: knowledge_assertion agent_type: manual_agent @@ -1095,7 +1103,7 @@ components: fields: chembl.molecule_chembl_id,chembl.drug_indications ## no prefix size: 1000 ## note size limit jmespath: "chembl.drug_indications|[?mesh_id=='{{ queryInputs }}']" - predicate: treated_by + predicate: tested_by_clinical_trials_of source: "infores:chembl" knowledge_level: knowledge_assertion agent_type: manual_agent @@ -1721,7 +1729,7 @@ components: parameters: fields: drugcentral.drug_use.contraindication.umls_cui ## no prefix size: 1000 ## note size limit; added just in case - predicate: contraindicated_for ## current biolink predicate + predicate: contraindicated_in ## current biolink predicate source: "infores:drugcentral" knowledge_level: knowledge_assertion agent_type: manual_agent @@ -1778,8 +1786,9 @@ components: ## FYI: output could also be SNOMED (specifically SNOMED-CT US Edition). ## Looks like the native ID for DrugCentral, see https://drugcentral.org/drugcard/1768#druguse. ## The original data source also may have some DOID mappings (see the linked example), but the API doesn't have this right now. - ## child of treats, seems to better fit the "indication" idea - predicate: treats + ## using the most-general "treats" predicate, because drugcentral seems to include text-mined assertions - with errors/imprecise + ## see https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7881657/ for details + predicate: treats_or_applied_or_studied_to_treat source: "infores:drugcentral" knowledge_level: knowledge_assertion agent_type: manual_agent @@ -1806,7 +1815,7 @@ components: parameters: fields: drugcentral.xrefs.unii size: 1000 ## note size limit - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:drugcentral" knowledge_level: knowledge_assertion agent_type: manual_agent @@ -1837,7 +1846,8 @@ components: ## FYI: output could also be SNOMED (specifically SNOMED-CT US Edition). ## Looks like the native ID for DrugCentral, see https://drugcentral.org/drugcard/1768#druguse. ## The original data source also may have some DOID mappings (see the linked example), but the API doesn't have this right now. - predicate: treats + ## using predicate for off-label use. Also, on drugcentral website, users can submit off-label suggestions (so self-report) + predicate: applied_to_treat source: "infores:drugcentral" knowledge_level: knowledge_assertion agent_type: manual_agent @@ -1862,7 +1872,7 @@ components: parameters: fields: drugcentral.xrefs.chembl_id size: 1000 ## note size limit - predicate: treated_by + predicate: treatment_applications_from source: "infores:drugcentral" knowledge_level: knowledge_assertion agent_type: manual_agent @@ -1974,7 +1984,9 @@ components: # fda_orphan_drug.marketing_approval_date, # fda_orphan_drug.orphan_designation.original_text fields: fda_orphan_drug.orphan_designation.umls - predicate: treats ## current biolink predicate + ## includes applications that were accepted, denied, revoked/withdrawn. I'm assuming that studies were done + ## for the application in the first place. However, our data doesn't include this info + predicate: studied_to_treat ## FDA Orphan Drug Designations and Approvals database source: "infores:fda-orphan-drug-db" knowledge_level: observation @@ -2000,7 +2012,7 @@ components: parameters: fields: fda_orphan_drug.pubchem_cid size: 1000 ## note size limit - predicate: treated_by ## current biolink predicate + predicate: treated_in_studies_by ## FDA Orphan Drug Designations and Approvals database source: "infores:fda-orphan-drug-db" knowledge_level: observation diff --git a/mydisease.info/smartapi.yaml b/mydisease.info/smartapi.yaml index 872d5788..ed01e4de 100644 --- a/mydisease.info/smartapi.yaml +++ b/mydisease.info/smartapi.yaml @@ -15,7 +15,7 @@ info: component: KP team: - Service Provider - biolink-version: "3.5.0" + biolink-version: "4.1.6" servers: - description: Encrypted Production server url: https://mydisease.info/v1 @@ -1206,7 +1206,6 @@ components: fields: mondo.predisposes_towards.mondo size: 1000 ## note the size limit predicate: contributes_to ## maps to "MONDO:predisposes_towards" - ## could use more specific biolink predicate like predisposes?? source: "infores:mondo" knowledge_level: knowledge_assertion agent_type: manual_agent diff --git a/mygene.info/openapi_full.yml b/mygene.info/openapi_full.yml index ef0687af..181928d2 100644 --- a/mygene.info/openapi_full.yml +++ b/mygene.info/openapi_full.yml @@ -14,7 +14,7 @@ info: component: KP team: - "Service Provider" - biolink-version: "3.5.0" + biolink-version: "4.1.6" servers: - description: Encrypted Production server url: https://mygene.info/v3 diff --git a/myvariant.info/openapi_full.yml b/myvariant.info/openapi_full.yml index 65c46985..0b9eee7a 100644 --- a/myvariant.info/openapi_full.yml +++ b/myvariant.info/openapi_full.yml @@ -15,7 +15,7 @@ info: component: KP team: - Service Provider - biolink-version: "3.5.0" + biolink-version: "4.1.6" servers: - description: Encrypted Production server url: https://myvariant.info/v1 diff --git a/ncats_rare_source/smartapi.yaml b/ncats_rare_source/smartapi.yaml index 9486f887..61995e80 100644 --- a/ncats_rare_source/smartapi.yaml +++ b/ncats_rare_source/smartapi.yaml @@ -16,7 +16,7 @@ info: component: KP team: - Service Provider - biolink-version: "3.5.0" + biolink-version: "4.1.6" servers: - description: Encrypted Production server url: https://biothings.ncats.io/rare_source diff --git a/ols/smartapi.yaml b/ols/smartapi.yaml index a12f714c..f9624c73 100644 --- a/ols/smartapi.yaml +++ b/ols/smartapi.yaml @@ -19,7 +19,7 @@ info: component: KP team: - Service Provider - biolink-version: "3.5.0" + biolink-version: "4.1.6" servers: - url: https://www.ebi.ac.uk/ols/api description: Production server diff --git a/pfocr/smartapi.yaml b/pfocr/smartapi.yaml index 72409ff0..49ea74c3 100644 --- a/pfocr/smartapi.yaml +++ b/pfocr/smartapi.yaml @@ -16,7 +16,7 @@ info: component: KP team: - Service Provider - biolink-version: "3.5.0" + biolink-version: "4.1.6" servers: - description: Encrypted Production server url: https://biothings.ncats.io/pfocr diff --git a/pharmgkb/smartapi.yaml b/pharmgkb/smartapi.yaml index f11440f4..97e44b1a 100644 --- a/pharmgkb/smartapi.yaml +++ b/pharmgkb/smartapi.yaml @@ -16,7 +16,7 @@ info: component: KP team: - "Service Provider" - biolink-version: "3.5.0" + biolink-version: "4.1.6" ## 31 x-bte operations total servers: - description: Production server diff --git a/quickgo/smartapi.yaml b/quickgo/smartapi.yaml index 0d29a643..1ffa11f6 100644 --- a/quickgo/smartapi.yaml +++ b/quickgo/smartapi.yaml @@ -19,7 +19,7 @@ info: component: KP team: - Service Provider - biolink-version: "3.5.0" + biolink-version: "4.1.6" servers: - url: https://www.ebi.ac.uk/QuickGO/services description: Production server diff --git a/repodb/smartapi.yaml b/repodb/smartapi.yaml index a6cf08e4..afbb5462 100644 --- a/repodb/smartapi.yaml +++ b/repodb/smartapi.yaml @@ -19,7 +19,7 @@ info: component: KP team: - Service Provider - biolink-version: "3.5.3" + biolink-version: "4.1.6" servers: - description: Encrypted Production server url: https://biothings.ncats.io/repodb @@ -311,9 +311,8 @@ paths: x-bte-kgs-operations: - $ref: '#/components/x-bte-kgs-operations/drug-disease-approved' - $ref: '#/components/x-bte-kgs-operations/disease-drug-approved' - ## uncomment for "treats-refactor"/biolink-model 4 update - # - $ref: '#/components/x-bte-kgs-operations/drug-disease-not-approved' - # - $ref: '#/components/x-bte-kgs-operations/disease-drug-not-approved' + - $ref: '#/components/x-bte-kgs-operations/drug-disease-not-approved' + - $ref: '#/components/x-bte-kgs-operations/disease-drug-not-approved' components: parameters: callback: diff --git a/rhea/smartapi.yaml b/rhea/smartapi.yaml index 97036fa4..5a71920d 100644 --- a/rhea/smartapi.yaml +++ b/rhea/smartapi.yaml @@ -15,7 +15,7 @@ info: component: KP team: - Service Provider - biolink-version: "3.5.0" + biolink-version: "4.1.6" servers: - description: Encrypted Production server url: https://biothings.ncats.io/rhea diff --git a/semmeddb/AutoGen_SEMMEDDB.ipynb b/semmeddb/AutoGen_SEMMEDDB.ipynb index 8c600fe1..667031a9 100644 --- a/semmeddb/AutoGen_SEMMEDDB.ipynb +++ b/semmeddb/AutoGen_SEMMEDDB.ipynb @@ -41,8 +41,8 @@ "metadata": {}, "source": [ "Requirements:\n", - "* install [Biolink-model Toolkit (bmt)](https://github.com/biolink/biolink-model-toolkit/). I'm [installing as a user](https://biolink.github.io/biolink-model-toolkit/intro/intro.html#for-users) with pip (`pip install bmt`). Using release 1.1.1 at the moment.\n", - "* install ruamel.yaml with [pip](https://pypi.org/project/ruamel.yaml/). Using 0.17.32 at the moment. It's more recent than the version from [conda-forge](https://anaconda.org/conda-forge/ruamel_yaml). The documentation is [here](https://yaml.readthedocs.io/en/latest/)\n", + "* install [Biolink-model Toolkit (bmt)](https://github.com/biolink/biolink-model-toolkit/). I'm [installing as a user](https://biolink.github.io/biolink-model-toolkit/intro/intro.html#for-users) with pip (`pip install bmt`). Using release 1.2.1 at the moment.\n", + "* install ruamel.yaml with [pip](https://pypi.org/project/ruamel.yaml/). Using 0.18.6 at the moment. It's more recent than the version from [conda-forge](https://anaconda.org/conda-forge/ruamel_yaml). The documentation is [here](https://yaml.readthedocs.io/en/latest/)\n", "\n", "Files to obtain before starting:\n", "* Get the meta-triple + API-doc-count file from the dev for BioThings SEMMEDDB. I've saved the file I'm using to the same directory as this notebook. This file was provided 2023-08-10 by Yao, and it includes counts of matching API documents/records for each metatriple. Generally, the total set of meta-triples should be fairly constant between data releases, but the doc counts may differ. \n", @@ -65,8 +65,8 @@ "id": "a5ee5aac", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:18:59.365482Z", - "start_time": "2024-04-10T05:18:58.545273Z" + "end_time": "2024-04-10T05:27:43.575832Z", + "start_time": "2024-04-10T05:27:42.797607Z" } }, "outputs": [], @@ -116,8 +116,8 @@ "id": "73408978", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:18:59.652140Z", - "start_time": "2024-04-10T05:18:59.368430Z" + "end_time": "2024-04-10T05:27:43.830713Z", + "start_time": "2024-04-10T05:27:43.579305Z" } }, "outputs": [], @@ -173,8 +173,8 @@ "id": "e8150ed6", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:18:59.661030Z", - "start_time": "2024-04-10T05:18:59.654454Z" + "end_time": "2024-04-10T05:27:43.840511Z", + "start_time": "2024-04-10T05:27:43.832956Z" } }, "outputs": [ @@ -199,8 +199,8 @@ "id": "57d2dc4a", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:18:59.675042Z", - "start_time": "2024-04-10T05:18:59.664455Z" + "end_time": "2024-04-10T05:27:43.855746Z", + "start_time": "2024-04-10T05:27:43.844259Z" } }, "outputs": [ @@ -354,8 +354,8 @@ "id": "181df62c", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:18:59.700903Z", - "start_time": "2024-04-10T05:18:59.677068Z" + "end_time": "2024-04-10T05:27:43.883101Z", + "start_time": "2024-04-10T05:27:43.858227Z" } }, "outputs": [ @@ -418,8 +418,8 @@ "id": "2a52d0b4", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:18:59.717287Z", - "start_time": "2024-04-10T05:18:59.702661Z" + "end_time": "2024-04-10T05:27:43.902520Z", + "start_time": "2024-04-10T05:27:43.885793Z" } }, "outputs": [ @@ -470,8 +470,8 @@ "id": "d0dd2ed7", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:18:59.726918Z", - "start_time": "2024-04-10T05:18:59.719542Z" + "end_time": "2024-04-10T05:27:43.914067Z", + "start_time": "2024-04-10T05:27:43.906190Z" } }, "outputs": [ @@ -627,8 +627,8 @@ "id": "b27b5f43", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:18:59.736262Z", - "start_time": "2024-04-10T05:18:59.728570Z" + "end_time": "2024-04-10T05:27:43.925211Z", + "start_time": "2024-04-10T05:27:43.916302Z" } }, "outputs": [ @@ -783,8 +783,8 @@ "id": "5765d868", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:18:59.745471Z", - "start_time": "2024-04-10T05:18:59.738256Z" + "end_time": "2024-04-10T05:27:43.935260Z", + "start_time": "2024-04-10T05:27:43.927585Z" } }, "outputs": [ @@ -884,7 +884,7 @@ "\n", "**Current logic**\n", "\n", - "I'm using biolink-model 3.5.3 right now. \n", + "I'm using biolink-model 4.1.5 right now. \n", "\n", "With biolink-model >= 3.5.1, Translator has reviewed some predicates for domain-predicate and predicate-range combo exclusions - ref: [Translator google group, google sheet link](https://docs.google.com/spreadsheets/d/1c1gx0Jgm9rJUOXcQhBtZgvx50Cvz1-jh0DdGtg1zcd8/edit#gid=1801185264).\n", "\n", @@ -900,7 +900,7 @@ "And we'll want to adjust the lists below if Translator reviews more predicates in the future. \n", "\n", "Old notes:\n", - "* same_as (previously excluded): itss meaning seems to be \"equivalent / it did just as well as some other thing\"\n", + "* same_as (previously excluded): its meaning seems to be \"equivalent / it did just as well as some other thing\"\n", "* If you see `[\"VERB\", \"NOM\", \"PREP\"]`, these seem to be practice phrases that we wouldn't want to use. see the [article](https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-12-486#Sec26)" ] }, @@ -910,8 +910,8 @@ "id": "dec1bcc5", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:18:59.757753Z", - "start_time": "2024-04-10T05:18:59.750499Z" + "end_time": "2024-04-10T05:27:43.948741Z", + "start_time": "2024-04-10T05:27:43.941265Z" } }, "outputs": [ @@ -947,8 +947,8 @@ "id": "0ab643b0", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:18:59.771067Z", - "start_time": "2024-04-10T05:18:59.759671Z" + "end_time": "2024-04-10T05:27:43.961491Z", + "start_time": "2024-04-10T05:27:43.951019Z" } }, "outputs": [], @@ -973,8 +973,8 @@ "id": "b6244458", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:18:59.784451Z", - "start_time": "2024-04-10T05:18:59.773152Z" + "end_time": "2024-04-10T05:27:43.975743Z", + "start_time": "2024-04-10T05:27:43.963804Z" } }, "outputs": [ @@ -1034,8 +1034,8 @@ "id": "24036b97", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:18:59.791864Z", - "start_time": "2024-04-10T05:18:59.786975Z" + "end_time": "2024-04-10T05:27:43.981496Z", + "start_time": "2024-04-10T05:27:43.977888Z" } }, "outputs": [ @@ -1061,8 +1061,8 @@ "id": "949ccb58", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:18:59.803015Z", - "start_time": "2024-04-10T05:18:59.794019Z" + "end_time": "2024-04-10T05:27:43.992201Z", + "start_time": "2024-04-10T05:27:43.983651Z" } }, "outputs": [ @@ -1200,8 +1200,8 @@ "id": "d470fa70", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:18:59.817977Z", - "start_time": "2024-04-10T05:18:59.806187Z" + "end_time": "2024-04-10T05:27:44.005546Z", + "start_time": "2024-04-10T05:27:43.994345Z" } }, "outputs": [ @@ -1294,8 +1294,8 @@ "id": "89c14528", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:18:59.833302Z", - "start_time": "2024-04-10T05:18:59.820130Z" + "end_time": "2024-04-10T05:27:44.020749Z", + "start_time": "2024-04-10T05:27:44.007597Z" } }, "outputs": [ @@ -1457,8 +1457,8 @@ "id": "8c8c04ce", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:18:59.844308Z", - "start_time": "2024-04-10T05:18:59.835444Z" + "end_time": "2024-04-10T05:27:44.029739Z", + "start_time": "2024-04-10T05:27:44.023082Z" } }, "outputs": [ @@ -1538,8 +1538,8 @@ "id": "0400e8e3", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:18:59.852761Z", - "start_time": "2024-04-10T05:18:59.846937Z" + "end_time": "2024-04-10T05:27:44.039007Z", + "start_time": "2024-04-10T05:27:44.032007Z" } }, "outputs": [], @@ -1569,8 +1569,8 @@ "id": "683a1f47", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:18:59.864964Z", - "start_time": "2024-04-10T05:18:59.855256Z" + "end_time": "2024-04-10T05:27:44.050920Z", + "start_time": "2024-04-10T05:27:44.041391Z" } }, "outputs": [ @@ -1716,14 +1716,14 @@ "id": "a7a170a6", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:01.830940Z", - "start_time": "2024-04-10T05:18:59.866945Z" + "end_time": "2024-04-10T05:27:46.155105Z", + "start_time": "2024-04-10T05:27:44.052932Z" } }, "outputs": [], "source": [ - "## as of 2023-08-14: using default which is 3.5.3 \n", - "bmt_tool = Toolkit()" + "## set to use biolink-model 4.1.6\n", + "bmt_tool = Toolkit('https://raw.githubusercontent.com/biolink/biolink-model/v4.1.6/biolink-model.yaml')" ] }, { @@ -1732,8 +1732,8 @@ "id": "4cc1fad9", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:01.867569Z", - "start_time": "2024-04-10T05:19:01.833331Z" + "end_time": "2024-04-10T05:27:46.191781Z", + "start_time": "2024-04-10T05:27:46.157217Z" } }, "outputs": [ @@ -1759,8 +1759,8 @@ "id": "c2c14436", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:02.634730Z", - "start_time": "2024-04-10T05:19:01.869812Z" + "end_time": "2024-04-10T05:27:46.960474Z", + "start_time": "2024-04-10T05:27:46.193834Z" } }, "outputs": [], @@ -1787,8 +1787,8 @@ "id": "7fb08392", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:02.641896Z", - "start_time": "2024-04-10T05:19:02.637140Z" + "end_time": "2024-04-10T05:27:46.967274Z", + "start_time": "2024-04-10T05:27:46.962480Z" } }, "outputs": [ @@ -1821,8 +1821,8 @@ "id": "22daf133", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:02.648255Z", - "start_time": "2024-04-10T05:19:02.644522Z" + "end_time": "2024-04-10T05:27:46.973022Z", + "start_time": "2024-04-10T05:27:46.969578Z" } }, "outputs": [], @@ -1837,11 +1837,21 @@ "id": "044843d6", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:02.659025Z", - "start_time": "2024-04-10T05:19:02.650607Z" + "end_time": "2024-04-10T05:27:46.986830Z", + "start_time": "2024-04-10T05:27:46.975569Z" } }, "outputs": [ + { + "data": { + "text/plain": [ + "(130, 4)" + ] + }, + "execution_count": 25, + "metadata": {}, + "output_type": "execute_result" + }, { "data": { "text/html": [ @@ -1977,7 +1987,8 @@ ], "source": [ "## was exploring the mapping by looking at slices of df\n", - "SEMMED_semtypes[120:130]" + "SEMMED_semtypes.shape\n", + "SEMMED_semtypes[120:131]" ] }, { @@ -2018,8 +2029,8 @@ "id": "eb7ea639", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:02.665617Z", - "start_time": "2024-04-10T05:19:02.660883Z" + "end_time": "2024-04-10T05:27:46.993764Z", + "start_time": "2024-04-10T05:27:46.988933Z" } }, "outputs": [ @@ -2058,8 +2069,8 @@ "id": "fc902a02", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:02.677131Z", - "start_time": "2024-04-10T05:19:02.668065Z" + "end_time": "2024-04-10T05:27:47.005486Z", + "start_time": "2024-04-10T05:27:46.996227Z" } }, "outputs": [ @@ -2251,8 +2262,8 @@ "id": "e641ae5c", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:02.693991Z", - "start_time": "2024-04-10T05:19:02.687610Z" + "end_time": "2024-04-10T05:27:47.026525Z", + "start_time": "2024-04-10T05:27:47.019619Z" } }, "outputs": [], @@ -2294,8 +2305,8 @@ "id": "882e7bde", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:02.699377Z", - "start_time": "2024-04-10T05:19:02.696098Z" + "end_time": "2024-04-10T05:27:47.032191Z", + "start_time": "2024-04-10T05:27:47.029014Z" } }, "outputs": [], @@ -2309,8 +2320,8 @@ "id": "f4220655", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:02.705966Z", - "start_time": "2024-04-10T05:19:02.701708Z" + "end_time": "2024-04-10T05:27:47.038412Z", + "start_time": "2024-04-10T05:27:47.034283Z" } }, "outputs": [ @@ -2358,8 +2369,8 @@ "id": "a3a9da81", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:02.712967Z", - "start_time": "2024-04-10T05:19:02.708708Z" + "end_time": "2024-04-10T05:27:47.044614Z", + "start_time": "2024-04-10T05:27:47.040793Z" } }, "outputs": [], @@ -2465,8 +2476,8 @@ "id": "8cf5b450", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:02.720845Z", - "start_time": "2024-04-10T05:19:02.715083Z" + "end_time": "2024-04-10T05:27:47.052717Z", + "start_time": "2024-04-10T05:27:47.047568Z" } }, "outputs": [ @@ -2517,8 +2528,8 @@ "id": "308358e6", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:02.732039Z", - "start_time": "2024-04-10T05:19:02.723316Z" + "end_time": "2024-04-10T05:27:47.064442Z", + "start_time": "2024-04-10T05:27:47.054762Z" } }, "outputs": [], @@ -2537,8 +2548,8 @@ "id": "67861c2e", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:02.746338Z", - "start_time": "2024-04-10T05:19:02.734326Z" + "end_time": "2024-04-10T05:27:47.077839Z", + "start_time": "2024-04-10T05:27:47.066946Z" } }, "outputs": [ @@ -2579,8 +2590,8 @@ "object_semtypes = set(imported_metatriples[\"OBJECT_SEMTYPE\"].unique())\n", "predicates = set(imported_metatriples[\"PREDICATE\"].unique())\n", "\n", - "len(subject_semtypes) ## was 127, now 112: decreased by 15\n", - "len(object_semtypes) ## was 127, now 110: decreased by 17 (number of unmapped entities)\n", + "len(subject_semtypes) ## was 127, now 113: decreased by 14\n", + "len(object_semtypes) ## was 127, now 111: decreased by 16 (number of unmapped entities)\n", "len(predicates) ## was 28, still 28 (expected)" ] }, @@ -2590,8 +2601,8 @@ "id": "647e4065", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:02.757891Z", - "start_time": "2024-04-10T05:19:02.748554Z" + "end_time": "2024-04-10T05:27:47.089896Z", + "start_time": "2024-04-10T05:27:47.080357Z" } }, "outputs": [ @@ -2766,8 +2777,8 @@ "id": "52496738", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:02.764908Z", - "start_time": "2024-04-10T05:19:02.759917Z" + "end_time": "2024-04-10T05:27:47.097093Z", + "start_time": "2024-04-10T05:27:47.092000Z" } }, "outputs": [], @@ -2796,8 +2807,8 @@ "id": "b05e90f6", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:02.772555Z", - "start_time": "2024-04-10T05:19:02.767123Z" + "end_time": "2024-04-10T05:27:47.104567Z", + "start_time": "2024-04-10T05:27:47.099114Z" } }, "outputs": [ @@ -2848,8 +2859,8 @@ "id": "6a3d217d", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:02.787170Z", - "start_time": "2024-04-10T05:19:02.774487Z" + "end_time": "2024-04-10T05:27:47.119306Z", + "start_time": "2024-04-10T05:27:47.106867Z" } }, "outputs": [], @@ -2875,8 +2886,8 @@ "id": "ec402da4", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:02.800274Z", - "start_time": "2024-04-10T05:19:02.789420Z" + "end_time": "2024-04-10T05:27:47.132235Z", + "start_time": "2024-04-10T05:27:47.121421Z" } }, "outputs": [ @@ -3007,8 +3018,8 @@ "id": "979e0da8", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:03.161510Z", - "start_time": "2024-04-10T05:19:02.802757Z" + "end_time": "2024-04-10T05:27:47.500487Z", + "start_time": "2024-04-10T05:27:47.134406Z" } }, "outputs": [], @@ -3024,8 +3035,8 @@ "id": "5d7f7944", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:03.179951Z", - "start_time": "2024-04-10T05:19:03.163957Z" + "end_time": "2024-04-10T05:27:47.519271Z", + "start_time": "2024-04-10T05:27:47.502957Z" } }, "outputs": [ @@ -3414,7 +3425,7 @@ "* semmeddb `administered_to` is \"trying something out with a goal\", not that it actually does something...see [definition](https://uts.nlm.nih.gov/uts/umls/semantic-network/T154)\n", "* semmeddb `diagnoses` is more of a \"this thing distinguishes / identifies this other thing\"...see [definition](https://uts.nlm.nih.gov/uts/umls/semantic-network/T163)\n", "* semmeddb `process_of` does seem to map well to biolink-model's `occurs in` so...okay. As an example, see the use of `process_of` in the [API's data](https://biothings.ncats.io/semmeddb/query?q=predicate:PROCESS_OF%20AND%20object.semantic_type_abbreviation:cell)\n", - "* keeping semmeddb `treats` is more general than biolink-model's `treats`. It's more of \"trying this out as a treatment\". see [definition](https://uts.nlm.nih.gov/uts/umls/semantic-network/T154)" + "* semmeddb `treats` is more general than biolink-model's `treats`. It's more of \"trying this out as a treatment\". see [definition](https://uts.nlm.nih.gov/uts/umls/semantic-network/T154)" ] }, { @@ -3441,8 +3452,8 @@ "id": "77adf097", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:03.194543Z", - "start_time": "2024-04-10T05:19:03.182319Z" + "end_time": "2024-04-10T05:27:47.533655Z", + "start_time": "2024-04-10T05:27:47.521679Z" } }, "outputs": [], @@ -3503,8 +3514,8 @@ "id": "80e84505", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:03.200720Z", - "start_time": "2024-04-10T05:19:03.196828Z" + "end_time": "2024-04-10T05:27:47.539546Z", + "start_time": "2024-04-10T05:27:47.535745Z" } }, "outputs": [], @@ -3527,8 +3538,8 @@ "id": "f9acdf7f", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:03.205724Z", - "start_time": "2024-04-10T05:19:03.202704Z" + "end_time": "2024-04-10T05:27:47.544495Z", + "start_time": "2024-04-10T05:27:47.541920Z" } }, "outputs": [], @@ -3556,8 +3567,8 @@ "id": "52cfbbc4", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:03.214863Z", - "start_time": "2024-04-10T05:19:03.207726Z" + "end_time": "2024-04-10T05:27:47.553701Z", + "start_time": "2024-04-10T05:27:47.546681Z" } }, "outputs": [], @@ -3590,8 +3601,8 @@ "id": "9718fe3a", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:03.230074Z", - "start_time": "2024-04-10T05:19:03.216710Z" + "end_time": "2024-04-10T05:27:47.569460Z", + "start_time": "2024-04-10T05:27:47.555747Z" } }, "outputs": [ @@ -3962,7 +3973,7 @@ " None\n", " None\n", " None\n", - " subject of treatment, application, or study fo...\n", + " subject of treatment application or study for ...\n", " None\n", " None\n", " None\n", @@ -4069,7 +4080,7 @@ "138 None produced by \n", "60 None close match \n", "61 increased affected by \n", - "148 None subject of treatment, application, or study fo... \n", + "148 None subject of treatment application or study for ... \n", "149 None is input of \n", "\n", " BM_Inv_QualPred BM_Inv_SubjAsp BM_Inv_SubjDirect \n", @@ -4117,8 +4128,8 @@ "id": "b121018d", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:03.242179Z", - "start_time": "2024-04-10T05:19:03.232289Z" + "end_time": "2024-04-10T05:27:47.581835Z", + "start_time": "2024-04-10T05:27:47.571680Z" }, "scrolled": true }, @@ -4201,11 +4212,11 @@ "\n", "Check if the predicate inverses look correct. \n", "\n", - "For bmt >=1.1.0 and biolink-model >=3.5.2, we want to:\n", - "* leave the inverse of `subclass of'` as `MISSING` because no inverse exists, so we'll want to remove it in the next step\n", + "For bmt >=1.2.0 and biolink-model >=4.1.5, we want to:\n", "* leave the inverse of `quanitifer qualifier` as `MISSING` since it's actually not a predicate, so we'll want to remove it in the next step\n", "\n", "Old notes: \n", + "* used to have `subclass of` removed in this step because it didn't have an inverse. now it does\n", "* Maybe some aren't correct because they don't have an inverse but they are directional...If so, I suggest going back and changing the predicates to ones with inverses. \n", "* Some predicates aren't directional (their entry in the biolink-model yaml will have the property `symmetric == true`) so those are identical in either direction..." ] @@ -4224,8 +4235,8 @@ "id": "85224c41", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:03.249120Z", - "start_time": "2024-04-10T05:19:03.244245Z" + "end_time": "2024-04-10T05:27:47.588670Z", + "start_time": "2024-04-10T05:27:47.583931Z" } }, "outputs": [], @@ -4241,8 +4252,8 @@ "id": "50027e5e", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:03.257730Z", - "start_time": "2024-04-10T05:19:03.251324Z" + "end_time": "2024-04-10T05:27:47.597225Z", + "start_time": "2024-04-10T05:27:47.590806Z" } }, "outputs": [], @@ -4266,8 +4277,8 @@ "id": "946dd392", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:03.273156Z", - "start_time": "2024-04-10T05:19:03.259789Z" + "end_time": "2024-04-10T05:27:47.612195Z", + "start_time": "2024-04-10T05:27:47.599217Z" } }, "outputs": [ @@ -4611,7 +4622,7 @@ " None\n", " None\n", " None\n", - " subject_of_treatment,_application,_or_study_fo...\n", + " subject_of_treatment_application_or_study_for_...\n", " None\n", " None\n", " None\n", @@ -4717,7 +4728,7 @@ "138 produced_by None \n", "60 close_match None \n", "61 affected_by caused_by \n", - "148 subject_of_treatment,_application,_or_study_fo... None \n", + "148 subject_of_treatment_application_or_study_for_... None \n", "149 is_input_of None \n", "\n", " BM_Inv_SubjAsp BM_Inv_SubjDirect \n", @@ -4783,8 +4794,8 @@ "id": "9079161f", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:03.281820Z", - "start_time": "2024-04-10T05:19:03.275339Z" + "end_time": "2024-04-10T05:27:47.621915Z", + "start_time": "2024-04-10T05:27:47.614301Z" } }, "outputs": [ @@ -4837,8 +4848,8 @@ "id": "ca959b8c", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:03.293684Z", - "start_time": "2024-04-10T05:19:03.284067Z" + "end_time": "2024-04-10T05:27:47.633949Z", + "start_time": "2024-04-10T05:27:47.623814Z" } }, "outputs": [ @@ -4918,9 +4929,8 @@ "\n", "Remove predicates in the mapping table, but we don't want to use for associations:\n", "- no biolink-model mapping: METHOD_OF, MEASUREMENT_OF\n", - "- no biolink-model inverse (`MISSING`) and other issues:\n", - " - ISA: already removed from data during Basic Filtering section 2.3 (predicates)\n", - " - MEASURES: mapping isn't to a predicate (quantifier_qualifier)\n", + "- no biolink-model inverse (`MISSING`) and mapping isn't to a predicate (quantifier_qualifier): MEASURES\n", + "- already removed from data during Basic Filtering section 2.3 (predicates): ISA\n", "\n", "Past: used to exclude USES (not helpful?), but now keeping because the predicate has been reviewed in the Translator-curated exclusions effort. ref: [Translator google group, google sheet link](https://docs.google.com/spreadsheets/d/1c1gx0Jgm9rJUOXcQhBtZgvx50Cvz1-jh0DdGtg1zcd8/edit#gid=1801185264)." ] @@ -4931,8 +4941,8 @@ "id": "5e25a929", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:03.299632Z", - "start_time": "2024-04-10T05:19:03.295702Z" + "end_time": "2024-04-10T05:27:47.639812Z", + "start_time": "2024-04-10T05:27:47.635849Z" } }, "outputs": [ @@ -4958,8 +4968,8 @@ "id": "5a46158c", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:03.316717Z", - "start_time": "2024-04-10T05:19:03.301519Z" + "end_time": "2024-04-10T05:27:47.656583Z", + "start_time": "2024-04-10T05:27:47.641876Z" } }, "outputs": [ @@ -5279,7 +5289,7 @@ " None\n", " None\n", " None\n", - " subject_of_treatment,_application,_or_study_fo...\n", + " subject_of_treatment_application_or_study_for_...\n", " None\n", " None\n", " None\n", @@ -5379,7 +5389,7 @@ "138 produced_by None \n", "60 close_match None \n", "61 affected_by caused_by \n", - "148 subject_of_treatment,_application,_or_study_fo... None \n", + "148 subject_of_treatment_application_or_study_for_... None \n", "149 is_input_of None \n", "\n", " BM_Inv_SubjAsp BM_Inv_SubjDirect \n", @@ -5438,8 +5448,8 @@ "id": "64cacd52", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:03.325159Z", - "start_time": "2024-04-10T05:19:03.319045Z" + "end_time": "2024-04-10T05:27:47.664460Z", + "start_time": "2024-04-10T05:27:47.658972Z" } }, "outputs": [], @@ -5454,8 +5464,8 @@ "id": "530e3631", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:03.338043Z", - "start_time": "2024-04-10T05:19:03.327103Z" + "end_time": "2024-04-10T05:27:47.677400Z", + "start_time": "2024-04-10T05:27:47.666281Z" } }, "outputs": [ @@ -5496,8 +5506,8 @@ "object_semtypes = set(imported_metatriples[\"OBJECT_SEMTYPE\"].unique())\n", "predicates = set(imported_metatriples[\"PREDICATE\"].unique())\n", "\n", - "len(subject_semtypes) ## was 112, still 112 (expected)\n", - "len(object_semtypes) ## was 110, still 110 (expected)\n", + "len(subject_semtypes) ## was 113, still 113 (expected)\n", + "len(object_semtypes) ## was 111, still 111 (expected)\n", "len(predicates) ## was 28, now 25: decreased by 3 (expected: ISA was already removed earlier)" ] }, @@ -5507,8 +5517,8 @@ "id": "863543b6", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:03.351827Z", - "start_time": "2024-04-10T05:19:03.340160Z" + "end_time": "2024-04-10T05:27:47.691724Z", + "start_time": "2024-04-10T05:27:47.679524Z" } }, "outputs": [ @@ -5728,8 +5738,8 @@ "id": "5f404ea6", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:03.366012Z", - "start_time": "2024-04-10T05:19:03.354394Z" + "end_time": "2024-04-10T05:27:47.707099Z", + "start_time": "2024-04-10T05:27:47.693895Z" } }, "outputs": [ @@ -5874,8 +5884,8 @@ "id": "efd0d556", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:03.376348Z", - "start_time": "2024-04-10T05:19:03.368099Z" + "end_time": "2024-04-10T05:27:47.718306Z", + "start_time": "2024-04-10T05:27:47.709235Z" } }, "outputs": [], @@ -5924,8 +5934,8 @@ "id": "32c37c3b", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:03.393221Z", - "start_time": "2024-04-10T05:19:03.378342Z" + "end_time": "2024-04-10T05:27:47.735751Z", + "start_time": "2024-04-10T05:27:47.720413Z" } }, "outputs": [ @@ -6217,8 +6227,8 @@ "id": "89bda465", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:03.399259Z", - "start_time": "2024-04-10T05:19:03.395405Z" + "end_time": "2024-04-10T05:27:47.741723Z", + "start_time": "2024-04-10T05:27:47.738120Z" } }, "outputs": [], @@ -6234,8 +6244,8 @@ "id": "1bb3d990", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:03.416584Z", - "start_time": "2024-04-10T05:19:03.401614Z" + "end_time": "2024-04-10T05:27:47.758891Z", + "start_time": "2024-04-10T05:27:47.743819Z" } }, "outputs": [ @@ -6543,8 +6553,8 @@ "id": "e5bb1ec1", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:07.403123Z", - "start_time": "2024-04-10T05:19:03.418738Z" + "end_time": "2024-04-10T05:27:51.762171Z", + "start_time": "2024-04-10T05:27:47.761051Z" } }, "outputs": [], @@ -6569,8 +6579,8 @@ "id": "bf7a6309", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:07.416915Z", - "start_time": "2024-04-10T05:19:07.405688Z" + "end_time": "2024-04-10T05:27:51.775598Z", + "start_time": "2024-04-10T05:27:51.764613Z" } }, "outputs": [ @@ -6761,8 +6771,8 @@ "id": "83675d58", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:07.431791Z", - "start_time": "2024-04-10T05:19:07.419605Z" + "end_time": "2024-04-10T05:27:51.791120Z", + "start_time": "2024-04-10T05:27:51.777521Z" } }, "outputs": [ @@ -6958,8 +6968,8 @@ "id": "b8f25836", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:07.448525Z", - "start_time": "2024-04-10T05:19:07.433838Z" + "end_time": "2024-04-10T05:27:51.808531Z", + "start_time": "2024-04-10T05:27:51.793381Z" } }, "outputs": [ @@ -7020,8 +7030,8 @@ "id": "3d0ed289", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:07.459952Z", - "start_time": "2024-04-10T05:19:07.450754Z" + "end_time": "2024-04-10T05:27:51.819456Z", + "start_time": "2024-04-10T05:27:51.810674Z" } }, "outputs": [ @@ -7062,8 +7072,8 @@ "id": "ddd78804", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:08.369931Z", - "start_time": "2024-04-10T05:19:07.462057Z" + "end_time": "2024-04-10T05:27:52.716609Z", + "start_time": "2024-04-10T05:27:51.821821Z" } }, "outputs": [ @@ -7098,8 +7108,8 @@ "id": "665de94a", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:08.389561Z", - "start_time": "2024-04-10T05:19:08.372436Z" + "end_time": "2024-04-10T05:27:52.737097Z", + "start_time": "2024-04-10T05:27:52.719088Z" } }, "outputs": [ @@ -7180,8 +7190,8 @@ "id": "86920c33", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:08.405096Z", - "start_time": "2024-04-10T05:19:08.392312Z" + "end_time": "2024-04-10T05:27:52.752219Z", + "start_time": "2024-04-10T05:27:52.739252Z" } }, "outputs": [ @@ -7336,8 +7346,8 @@ "id": "2c859df9", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:08.421309Z", - "start_time": "2024-04-10T05:19:08.407970Z" + "end_time": "2024-04-10T05:27:52.767949Z", + "start_time": "2024-04-10T05:27:52.754199Z" } }, "outputs": [ @@ -7441,8 +7451,8 @@ "id": "b53030eb", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:08.433017Z", - "start_time": "2024-04-10T05:19:08.424422Z" + "end_time": "2024-04-10T05:27:52.779038Z", + "start_time": "2024-04-10T05:27:52.769948Z" } }, "outputs": [], @@ -7470,8 +7480,8 @@ "id": "70092440", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:08.446790Z", - "start_time": "2024-04-10T05:19:08.435362Z" + "end_time": "2024-04-10T05:27:52.792370Z", + "start_time": "2024-04-10T05:27:52.781709Z" } }, "outputs": [ @@ -7654,8 +7664,8 @@ "id": "9e435399", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:08.458372Z", - "start_time": "2024-04-10T05:19:08.448787Z" + "end_time": "2024-04-10T05:27:52.804926Z", + "start_time": "2024-04-10T05:27:52.794422Z" } }, "outputs": [], @@ -7684,8 +7694,8 @@ "id": "a0fe51f5", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:08.472543Z", - "start_time": "2024-04-10T05:19:08.460811Z" + "end_time": "2024-04-10T05:27:52.817834Z", + "start_time": "2024-04-10T05:27:52.806661Z" } }, "outputs": [ @@ -7880,8 +7890,8 @@ "id": "3f42bd07", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:08.483244Z", - "start_time": "2024-04-10T05:19:08.474710Z" + "end_time": "2024-04-10T05:27:52.827839Z", + "start_time": "2024-04-10T05:27:52.820269Z" } }, "outputs": [], @@ -7900,8 +7910,8 @@ "id": "6c651d23", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:08.500303Z", - "start_time": "2024-04-10T05:19:08.485534Z" + "end_time": "2024-04-10T05:27:52.842824Z", + "start_time": "2024-04-10T05:27:52.829976Z" } }, "outputs": [ @@ -8039,8 +8049,8 @@ "id": "cc7864f5", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:08.531540Z", - "start_time": "2024-04-10T05:19:08.502533Z" + "end_time": "2024-04-10T05:27:52.873640Z", + "start_time": "2024-04-10T05:27:52.845199Z" } }, "outputs": [ @@ -8292,8 +8302,8 @@ "id": "b8d843fb", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:08.570072Z", - "start_time": "2024-04-10T05:19:08.533425Z" + "end_time": "2024-04-10T05:27:52.910605Z", + "start_time": "2024-04-10T05:27:52.875576Z" } }, "outputs": [ @@ -8529,7 +8539,7 @@ " None\n", " None\n", " None\n", - " subject_of_treatment,_application,_or_study_fo...\n", + " subject_of_treatment_application_or_study_for_...\n", " None\n", " None\n", " None\n", @@ -8590,7 +8600,7 @@ "4993 None related_to \n", "5004 decreased affected_by \n", "5005 None interacts_with \n", - "5050 None subject_of_treatment,_application,_or_study_fo... \n", + "5050 None subject_of_treatment_application_or_study_for_... \n", "\n", " BM_Inv_QualPred BM_Inv_SubjAsp BM_Inv_SubjDirect \n", "146 None None None \n", @@ -8929,8 +8939,8 @@ "id": "480daedc", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:08.771524Z", - "start_time": "2024-04-10T05:19:08.572809Z" + "end_time": "2024-04-10T05:27:53.114504Z", + "start_time": "2024-04-10T05:27:52.913078Z" } }, "outputs": [], @@ -8949,8 +8959,8 @@ "id": "08e436d1", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:08.790816Z", - "start_time": "2024-04-10T05:19:08.773707Z" + "end_time": "2024-04-10T05:27:53.133631Z", + "start_time": "2024-04-10T05:27:53.116686Z" } }, "outputs": [ @@ -9106,8 +9116,8 @@ "id": "222c6bd1", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:08.815778Z", - "start_time": "2024-04-10T05:19:08.808259Z" + "end_time": "2024-04-10T05:27:53.158637Z", + "start_time": "2024-04-10T05:27:53.150510Z" } }, "outputs": [], @@ -9180,6 +9190,8 @@ " ],\n", " 'predicate': biolink_pred,\n", " 'source': doublequote('infores:semmeddb'),\n", + " 'knowledge_level': 'not_provided',\n", + " 'agent_type': 'text_mining_agent',\n", " 'response_mapping': {\n", " ## matches output as object\n", " ## so umls-obj and ncbigene-obj are the response-mappings generated\n", @@ -9207,8 +9219,8 @@ "id": "83b2edf4", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:08.823000Z", - "start_time": "2024-04-10T05:19:08.817932Z" + "end_time": "2024-04-10T05:27:53.165220Z", + "start_time": "2024-04-10T05:27:53.160529Z" } }, "outputs": [ @@ -9226,6 +9238,8 @@ " 'outputs': [{'id': 'UMLS', 'semantic': 'Disease'}],\n", " 'predicate': 'location_of',\n", " 'source': 'infores:semmeddb',\n", + " 'knowledge_level': 'not_provided',\n", + " 'agent_type': 'text_mining_agent',\n", " 'response_mapping': {'$ref': '#/components/x-bte-response-mapping/umls-obj'}}]}" ] }, @@ -9250,8 +9264,8 @@ "id": "723f107d", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:08.830803Z", - "start_time": "2024-04-10T05:19:08.825299Z" + "end_time": "2024-04-10T05:27:53.173284Z", + "start_time": "2024-04-10T05:27:53.167606Z" } }, "outputs": [ @@ -9269,6 +9283,8 @@ " 'outputs': [{'id': 'UMLS', 'semantic': 'Disease'}],\n", " 'predicate': 'related_to',\n", " 'source': 'infores:semmeddb',\n", + " 'knowledge_level': 'not_provided',\n", + " 'agent_type': 'text_mining_agent',\n", " 'response_mapping': {'$ref': '#/components/x-bte-response-mapping/umls-obj'}}]}" ] }, @@ -9293,8 +9309,8 @@ "id": "c55ecc04", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:08.838058Z", - "start_time": "2024-04-10T05:19:08.833047Z" + "end_time": "2024-04-10T05:27:53.181272Z", + "start_time": "2024-04-10T05:27:53.176123Z" } }, "outputs": [ @@ -9312,6 +9328,8 @@ " 'outputs': [{'id': 'NCBIGene', 'semantic': 'Gene'}],\n", " 'predicate': 'affects',\n", " 'source': 'infores:semmeddb',\n", + " 'knowledge_level': 'not_provided',\n", + " 'agent_type': 'text_mining_agent',\n", " 'response_mapping': {'$ref': '#/components/x-bte-response-mapping/ncbigene-obj'},\n", " 'qualifiers': {'qualified_predicate': 'causes',\n", " 'object_aspect_qualifier': 'activity_or_abundance',\n", @@ -9339,8 +9357,8 @@ "id": "ba5c9ffa", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:08.845029Z", - "start_time": "2024-04-10T05:19:08.840335Z" + "end_time": "2024-04-10T05:27:53.188235Z", + "start_time": "2024-04-10T05:27:53.183101Z" } }, "outputs": [ @@ -9358,6 +9376,8 @@ " 'outputs': [{'id': 'NCBIGene', 'semantic': 'Gene'}],\n", " 'predicate': 'affects',\n", " 'source': 'infores:semmeddb',\n", + " 'knowledge_level': 'not_provided',\n", + " 'agent_type': 'text_mining_agent',\n", " 'response_mapping': {'$ref': '#/components/x-bte-response-mapping/ncbigene-obj'},\n", " 'qualifiers': {'qualified_predicate': 'causes',\n", " 'object_aspect_qualifier': 'activity_or_abundance',\n", @@ -9385,8 +9405,8 @@ "id": "8effdfd9", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:08.868328Z", - "start_time": "2024-04-10T05:19:08.847367Z" + "end_time": "2024-04-10T05:27:53.211701Z", + "start_time": "2024-04-10T05:27:53.190469Z" } }, "outputs": [ @@ -10216,8 +10236,8 @@ "id": "912aa75d", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:08.878503Z", - "start_time": "2024-04-10T05:19:08.870651Z" + "end_time": "2024-04-10T05:27:53.222568Z", + "start_time": "2024-04-10T05:27:53.214179Z" } }, "outputs": [], @@ -10292,6 +10312,8 @@ " ],\n", " 'predicate': biolink_inverse_pred, ## use inverse pred!\n", " 'source': doublequote('infores:semmeddb'),\n", + " 'knowledge_level': 'not_provided',\n", + " 'agent_type': 'text_mining_agent',\n", " 'response_mapping': {\n", " ## matches output as object\n", " ## so umls-obj and ncbigene-obj are the response-mappings generated\n", @@ -10320,8 +10342,8 @@ "id": "955b36a2", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:08.900575Z", - "start_time": "2024-04-10T05:19:08.880331Z" + "end_time": "2024-04-10T05:27:53.245117Z", + "start_time": "2024-04-10T05:27:53.224720Z" } }, "outputs": [ @@ -10431,7 +10453,7 @@ " None\n", " None\n", " None\n", - " subject_of_treatment,_application,_or_study_fo...\n", + " subject_of_treatment_application_or_study_for_...\n", " None\n", " None\n", " None\n", @@ -10449,7 +10471,7 @@ " None\n", " None\n", " None\n", - " subject_of_treatment,_application,_or_study_fo...\n", + " subject_of_treatment_application_or_study_for_...\n", " None\n", " None\n", " None\n", @@ -10611,8 +10633,8 @@ "0 located_in None \n", "1 located_in None \n", "2 located_in None \n", - "3 subject_of_treatment,_application,_or_study_fo... None \n", - "4 subject_of_treatment,_application,_or_study_fo... None \n", + "3 subject_of_treatment_application_or_study_for_... None \n", + "4 subject_of_treatment_application_or_study_for_... None \n", "... ... ... \n", "5057 coexists_with None \n", "5059 disrupted_by None \n", @@ -10653,8 +10675,8 @@ "id": "98c5830f", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:08.907462Z", - "start_time": "2024-04-10T05:19:08.902674Z" + "end_time": "2024-04-10T05:27:53.252254Z", + "start_time": "2024-04-10T05:27:53.247250Z" } }, "outputs": [ @@ -10672,6 +10694,8 @@ " 'outputs': [{'id': 'UMLS', 'semantic': 'GrossAnatomicalStructure'}],\n", " 'predicate': 'located_in',\n", " 'source': 'infores:semmeddb',\n", + " 'knowledge_level': 'not_provided',\n", + " 'agent_type': 'text_mining_agent',\n", " 'response_mapping': {'$ref': '#/components/x-bte-response-mapping/umls-subj'}}]}" ] }, @@ -10696,8 +10720,8 @@ "id": "b251cb75", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:08.913957Z", - "start_time": "2024-04-10T05:19:08.909472Z" + "end_time": "2024-04-10T05:27:53.258704Z", + "start_time": "2024-04-10T05:27:53.254173Z" } }, "outputs": [ @@ -10715,6 +10739,8 @@ " 'outputs': [{'id': 'NCBIGene', 'semantic': 'Gene'}],\n", " 'predicate': 'related_to',\n", " 'source': 'infores:semmeddb',\n", + " 'knowledge_level': 'not_provided',\n", + " 'agent_type': 'text_mining_agent',\n", " 'response_mapping': {'$ref': '#/components/x-bte-response-mapping/ncbigene-subj'}}]}" ] }, @@ -10739,8 +10765,8 @@ "id": "586ebf88", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:08.920769Z", - "start_time": "2024-04-10T05:19:08.915977Z" + "end_time": "2024-04-10T05:27:53.265554Z", + "start_time": "2024-04-10T05:27:53.260941Z" } }, "outputs": [ @@ -10758,6 +10784,8 @@ " 'outputs': [{'id': 'UMLS', 'semantic': 'Polypeptide'}],\n", " 'predicate': 'affected_by',\n", " 'source': 'infores:semmeddb',\n", + " 'knowledge_level': 'not_provided',\n", + " 'agent_type': 'text_mining_agent',\n", " 'response_mapping': {'$ref': '#/components/x-bte-response-mapping/umls-subj'},\n", " 'qualifiers': {'qualified_predicate': 'caused_by',\n", " 'subject_aspect_qualifier': 'activity_or_abundance',\n", @@ -10785,8 +10813,8 @@ "id": "a105373c", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:08.929205Z", - "start_time": "2024-04-10T05:19:08.923754Z" + "end_time": "2024-04-10T05:27:53.272041Z", + "start_time": "2024-04-10T05:27:53.267502Z" } }, "outputs": [ @@ -10804,6 +10832,8 @@ " 'outputs': [{'id': 'NCBIGene', 'semantic': 'Gene'}],\n", " 'predicate': 'affected_by',\n", " 'source': 'infores:semmeddb',\n", + " 'knowledge_level': 'not_provided',\n", + " 'agent_type': 'text_mining_agent',\n", " 'response_mapping': {'$ref': '#/components/x-bte-response-mapping/ncbigene-subj'},\n", " 'qualifiers': {'qualified_predicate': 'caused_by',\n", " 'subject_aspect_qualifier': 'activity_or_abundance',\n", @@ -10839,8 +10869,8 @@ "id": "db9f9f81", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:08.938688Z", - "start_time": "2024-04-10T05:19:08.931614Z" + "end_time": "2024-04-10T05:27:53.281533Z", + "start_time": "2024-04-10T05:27:53.274307Z" } }, "outputs": [], @@ -10913,8 +10943,8 @@ "id": "3856781d", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:08.993362Z", - "start_time": "2024-04-10T05:19:08.940525Z" + "end_time": "2024-04-10T05:27:53.336511Z", + "start_time": "2024-04-10T05:27:53.283690Z" } }, "outputs": [], @@ -10928,8 +10958,8 @@ "id": "fdcd4202", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:08.999780Z", - "start_time": "2024-04-10T05:19:08.995967Z" + "end_time": "2024-04-10T05:27:53.342608Z", + "start_time": "2024-04-10T05:27:53.338996Z" } }, "outputs": [ @@ -10954,8 +10984,8 @@ "id": "5495d772", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:09.006513Z", - "start_time": "2024-04-10T05:19:09.001715Z" + "end_time": "2024-04-10T05:27:53.349452Z", + "start_time": "2024-04-10T05:27:53.344807Z" } }, "outputs": [ @@ -10977,6 +11007,8 @@ " 'outputs': [{'id': 'UMLS', 'semantic': 'SmallMolecule'}],\n", " 'predicate': 'affected_by',\n", " 'source': 'infores:semmeddb',\n", + " 'knowledge_level': 'not_provided',\n", + " 'agent_type': 'text_mining_agent',\n", " 'response_mapping': {'$ref': '#/components/x-bte-response-mapping/umls-subj'},\n", " 'qualifiers': {'qualified_predicate': 'caused_by',\n", " 'subject_aspect_qualifier': 'activity_or_abundance',\n", @@ -10993,6 +11025,49 @@ " break" ] }, + { + "cell_type": "code", + "execution_count": 98, + "id": "84637c6f", + "metadata": { + "ExecuteTime": { + "end_time": "2024-04-10T05:27:53.357762Z", + "start_time": "2024-04-10T05:27:53.351537Z" + } + }, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "sbst-CAUSES-patf\n", + "[{'supportBatch': True,\n", + " 'useTemplating': True,\n", + " 'inputs': [{'id': 'UMLS', 'semantic': 'ChemicalEntity'}],\n", + " 'requestBody': {'body': {'q': '{{ queryInputs }}', 'scopes': 'subject.umls'}},\n", + " 'parameters': {'fields': 'object.umls,predication.pmid,predication.sentence,subject.name,object.name',\n", + " 'size': 1000,\n", + " 'filter': 'predicate:CAUSES AND '\n", + " 'object.semantic_type_abbreviation:patf AND '\n", + " '_exists_:object.umls AND pmid_count:>3'},\n", + " 'outputs': [{'id': 'UMLS', 'semantic': 'PathologicalProcess'}],\n", + " 'predicate': 'causes',\n", + " 'source': 'infores:semmeddb',\n", + " 'knowledge_level': 'not_provided',\n", + " 'agent_type': 'text_mining_agent',\n", + " 'response_mapping': {'$ref': '#/components/x-bte-response-mapping/umls-obj'}}]\n" + ] + } + ], + "source": [ + "## double-check qualifier + rev operation is written properly?\n", + "for i in kgs_operations['x-bte-kgs-operations'].keys():\n", + " if ('sbst' in i):\n", + " print(i)\n", + " pprint.pprint(kgs_operations['x-bte-kgs-operations'][i], sort_dicts = False)\n", + " break" + ] + }, { "cell_type": "markdown", "id": "fd057af2", @@ -11008,12 +11083,12 @@ }, { "cell_type": "code", - "execution_count": 98, + "execution_count": 99, "id": "239dce9d", "metadata": { "ExecuteTime": { - "end_time": "2024-04-10T05:19:59.041554Z", - "start_time": "2024-04-10T05:19:45.570496Z" + "end_time": "2024-04-10T05:28:18.839746Z", + "start_time": "2024-04-10T05:28:03.290117Z" } }, "outputs": [], @@ -11034,12 +11109,12 @@ }, { "cell_type": "code", - "execution_count": 108, + "execution_count": 100, "id": "27403608", "metadata": { "ExecuteTime": { - "end_time": "2023-11-01T00:53:32.886628Z", - "start_time": "2023-11-01T00:53:32.883648Z" + "end_time": "2024-04-10T05:29:00.268747Z", + "start_time": "2024-04-10T05:29:00.265536Z" } }, "outputs": [], @@ -11054,12 +11129,12 @@ }, { "cell_type": "code", - "execution_count": 109, + "execution_count": 101, "id": "4bec97ed", "metadata": { "ExecuteTime": { - "end_time": "2023-11-01T00:53:33.912604Z", - "start_time": "2023-11-01T00:53:33.909180Z" + "end_time": "2024-04-10T05:29:00.957978Z", + "start_time": "2024-04-10T05:29:00.953912Z" } }, "outputs": [], @@ -11069,12 +11144,12 @@ }, { "cell_type": "code", - "execution_count": 110, + "execution_count": 102, "id": "e64c34db", "metadata": { "ExecuteTime": { - "end_time": "2023-11-01T00:53:35.319258Z", - "start_time": "2023-11-01T00:53:34.753670Z" + "end_time": "2024-04-10T05:29:02.561023Z", + "start_time": "2024-04-10T05:29:01.555604Z" } }, "outputs": [], diff --git a/semmeddb/generated_list.yaml b/semmeddb/generated_list.yaml index 52328d45..868db876 100644 --- a/semmeddb/generated_list.yaml +++ b/semmeddb/generated_list.yaml @@ -65,6 +65,7 @@ x-bte-kgs-operations: - $ref: '#/components/x-bte-kgs-operations/bpoc-LOCATION_OF-orch' - $ref: '#/components/x-bte-kgs-operations/bpoc-LOCATION_OF-orch-rev' - $ref: '#/components/x-bte-kgs-operations/bpoc-LOCATION_OF-anab' +- $ref: '#/components/x-bte-kgs-operations/bpoc-LOCATION_OF-anab-rev' - $ref: '#/components/x-bte-kgs-operations/blor-LOCATION_OF-dsyn' - $ref: '#/components/x-bte-kgs-operations/phsu-TREATS-neop' - $ref: '#/components/x-bte-kgs-operations/bpoc_umls-LOCATION_OF-aapp_ncbigene' @@ -83,7 +84,6 @@ x-bte-kgs-operations: - $ref: '#/components/x-bte-kgs-operations/bacs-PART_OF-celc' - $ref: '#/components/x-bte-kgs-operations/bacs-PART_OF-celc-rev' - $ref: '#/components/x-bte-kgs-operations/bpoc-LOCATION_OF-sosy' -- $ref: '#/components/x-bte-kgs-operations/bpoc-LOCATION_OF-sosy-rev' - $ref: '#/components/x-bte-kgs-operations/blor-LOCATION_OF-diap' - $ref: '#/components/x-bte-kgs-operations/blor-LOCATION_OF-diap-rev' - $ref: '#/components/x-bte-kgs-operations/blor-LOCATION_OF-bpoc' @@ -445,6 +445,7 @@ x-bte-kgs-operations: - $ref: '#/components/x-bte-kgs-operations/bact-ASSOCIATED_WITH-dsyn' - $ref: '#/components/x-bte-kgs-operations/bact-ASSOCIATED_WITH-dsyn-rev' - $ref: '#/components/x-bte-kgs-operations/diap-DIAGNOSES-anab' +- $ref: '#/components/x-bte-kgs-operations/diap-DIAGNOSES-anab-rev' - $ref: '#/components/x-bte-kgs-operations/bpoc-LOCATION_OF-strd' - $ref: '#/components/x-bte-kgs-operations/imft-PART_OF-virs' - $ref: '#/components/x-bte-kgs-operations/imft-PART_OF-virs-rev' @@ -615,6 +616,7 @@ x-bte-kgs-operations: - $ref: '#/components/x-bte-kgs-operations/bdsu-PART_OF-bdsu' - $ref: '#/components/x-bte-kgs-operations/bdsu-PART_OF-bdsu-rev' - $ref: '#/components/x-bte-kgs-operations/bsoj-LOCATION_OF-anab' +- $ref: '#/components/x-bte-kgs-operations/bsoj-LOCATION_OF-anab-rev' - $ref: '#/components/x-bte-kgs-operations/inch-COEXISTS_WITH-inch-rev' - $ref: '#/components/x-bte-kgs-operations/horm-INTERACTS_WITH-aapp-rev' - $ref: '#/components/x-bte-kgs-operations/topp-AFFECTS-ortf' @@ -843,7 +845,6 @@ x-bte-kgs-operations: - $ref: '#/components/x-bte-kgs-operations/gngm-INTERACTS_WITH-gngm' - $ref: '#/components/x-bte-kgs-operations/gngm-INTERACTS_WITH-gngm-rev' - $ref: '#/components/x-bte-kgs-operations/diap-DIAGNOSES-sosy' -- $ref: '#/components/x-bte-kgs-operations/diap-DIAGNOSES-sosy-rev' - $ref: '#/components/x-bte-kgs-operations/acab-COEXISTS_WITH-dsyn-rev' - $ref: '#/components/x-bte-kgs-operations/celf-AFFECTS-neop' - $ref: '#/components/x-bte-kgs-operations/celf-AFFECTS-neop-rev' @@ -918,7 +919,6 @@ x-bte-kgs-operations: - $ref: '#/components/x-bte-kgs-operations/imft-PART_OF-celc-rev' - $ref: '#/components/x-bte-kgs-operations/nnon-ADMINISTERED_TO-cell-rev' - $ref: '#/components/x-bte-kgs-operations/bsoj-LOCATION_OF-sosy' -- $ref: '#/components/x-bte-kgs-operations/bsoj-LOCATION_OF-sosy-rev' - $ref: '#/components/x-bte-kgs-operations/aapp-COEXISTS_WITH-aapp' - $ref: '#/components/x-bte-kgs-operations/aapp-COEXISTS_WITH-aapp-rev' - $ref: '#/components/x-bte-kgs-operations/bact-LOCATION_OF-carb' @@ -1478,6 +1478,7 @@ x-bte-kgs-operations: - $ref: '#/components/x-bte-kgs-operations/aapp_ncbigene-AFFECTS-patf_umls-rev' - $ref: '#/components/x-bte-kgs-operations/bacs-PART_OF-emst' - $ref: '#/components/x-bte-kgs-operations/nnon-AUGMENTS-cell-rev' +- $ref: '#/components/x-bte-kgs-operations/anab-LOCATION_OF-neop' - $ref: '#/components/x-bte-kgs-operations/anab-LOCATION_OF-neop-rev' - $ref: '#/components/x-bte-kgs-operations/aapp_ncbigene-INHIBITS-gngm_umls-rev' - $ref: '#/components/x-bte-kgs-operations/horm-PREVENTS-dsyn-rev' @@ -1576,6 +1577,7 @@ x-bte-kgs-operations: - $ref: '#/components/x-bte-kgs-operations/gngm-AFFECTS-patf' - $ref: '#/components/x-bte-kgs-operations/gngm-AFFECTS-patf-rev' - $ref: '#/components/x-bte-kgs-operations/patf-COEXISTS_WITH-anab' +- $ref: '#/components/x-bte-kgs-operations/patf-COEXISTS_WITH-anab-rev' - $ref: '#/components/x-bte-kgs-operations/phsu-AUGMENTS-bpoc-rev' - $ref: '#/components/x-bte-kgs-operations/bacs-COEXISTS_WITH-nusq' - $ref: '#/components/x-bte-kgs-operations/bacs-COEXISTS_WITH-nusq-rev' @@ -1651,6 +1653,8 @@ x-bte-kgs-operations: - $ref: '#/components/x-bte-kgs-operations/aapp_ncbigene-INHIBITS-bacs_umls-rev' - $ref: '#/components/x-bte-kgs-operations/aapp-COEXISTS_WITH-horm' - $ref: '#/components/x-bte-kgs-operations/gngm-AFFECTS-dsyn' +- $ref: '#/components/x-bte-kgs-operations/sbst-CAUSES-patf' +- $ref: '#/components/x-bte-kgs-operations/sbst-CAUSES-patf-rev' - $ref: '#/components/x-bte-kgs-operations/phsu-AFFECTS-cell-rev' - $ref: '#/components/x-bte-kgs-operations/patf-AFFECTS-phsf' - $ref: '#/components/x-bte-kgs-operations/bacs_umls-COEXISTS_WITH-aapp_ncbigene' @@ -1691,6 +1695,8 @@ x-bte-kgs-operations: - $ref: '#/components/x-bte-kgs-operations/orch-PREVENTS-sosy-rev' - $ref: '#/components/x-bte-kgs-operations/gngm-STIMULATES-aapp' - $ref: '#/components/x-bte-kgs-operations/gngm-STIMULATES-aapp-rev' +- $ref: '#/components/x-bte-kgs-operations/sbst-CAUSES-dsyn' +- $ref: '#/components/x-bte-kgs-operations/sbst-CAUSES-dsyn-rev' - $ref: '#/components/x-bte-kgs-operations/aapp-COEXISTS_WITH-carb' - $ref: '#/components/x-bte-kgs-operations/nnon-AUGMENTS-bpoc-rev' - $ref: '#/components/x-bte-kgs-operations/rcpt-COEXISTS_WITH-aapp' @@ -1723,6 +1729,7 @@ x-bte-kgs-operations: - $ref: '#/components/x-bte-kgs-operations/cell-PRODUCES-imft' - $ref: '#/components/x-bte-kgs-operations/cell-PRODUCES-imft-rev' - $ref: '#/components/x-bte-kgs-operations/opco-CAUSES-dsyn-rev' +- $ref: '#/components/x-bte-kgs-operations/anab-PART_OF-neop' - $ref: '#/components/x-bte-kgs-operations/anab-PART_OF-neop-rev' - $ref: '#/components/x-bte-kgs-operations/rcpt-COEXISTS_WITH-bacs' - $ref: '#/components/x-bte-kgs-operations/rcpt-COEXISTS_WITH-bacs-rev' @@ -1822,6 +1829,7 @@ x-bte-kgs-operations: - $ref: '#/components/x-bte-kgs-operations/bdsu-LOCATION_OF-horm' - $ref: '#/components/x-bte-kgs-operations/eico-AUGMENTS-orgf-rev' - $ref: '#/components/x-bte-kgs-operations/phsu-TREATS-anab' +- $ref: '#/components/x-bte-kgs-operations/anab-COEXISTS_WITH-cgab' - $ref: '#/components/x-bte-kgs-operations/lipd-DISRUPTS-orgf-rev' - $ref: '#/components/x-bte-kgs-operations/gngm-AFFECTS-celc' - $ref: '#/components/x-bte-kgs-operations/gngm-AFFECTS-celc-rev' @@ -1894,6 +1902,7 @@ x-bte-kgs-operations: - $ref: '#/components/x-bte-kgs-operations/tisu-PART_OF-virs' - $ref: '#/components/x-bte-kgs-operations/tisu-PART_OF-virs-rev' - $ref: '#/components/x-bte-kgs-operations/inch-AUGMENTS-bpoc-rev' +- $ref: '#/components/x-bte-kgs-operations/neop-COEXISTS_WITH-anab-rev' - $ref: '#/components/x-bte-kgs-operations/elii-DISRUPTS-orgf-rev' - $ref: '#/components/x-bte-kgs-operations/gngm-AUGMENTS-neop' - $ref: '#/components/x-bte-kgs-operations/gngm-AUGMENTS-neop-rev' @@ -2043,6 +2052,8 @@ x-bte-kgs-operations: - $ref: '#/components/x-bte-kgs-operations/bacs-AUGMENTS-comd-rev' - $ref: '#/components/x-bte-kgs-operations/cell-LOCATION_OF-fngs' - $ref: '#/components/x-bte-kgs-operations/cell-LOCATION_OF-fngs-rev' +- $ref: '#/components/x-bte-kgs-operations/anab-COEXISTS_WITH-anab' +- $ref: '#/components/x-bte-kgs-operations/anab-COEXISTS_WITH-anab-rev' - $ref: '#/components/x-bte-kgs-operations/gngm_ncbigene-AUGMENTS-celc_umls-rev' - $ref: '#/components/x-bte-kgs-operations/gngm_ncbigene-STIMULATES-cell_umls-rev' - $ref: '#/components/x-bte-kgs-operations/tisu_umls-PRODUCES-aapp_ncbigene-rev' @@ -2097,6 +2108,7 @@ x-bte-kgs-operations: - $ref: '#/components/x-bte-kgs-operations/aapp_ncbigene-DISRUPTS-cell_umls' - $ref: '#/components/x-bte-kgs-operations/aapp_ncbigene-DISRUPTS-cell_umls-rev' - $ref: '#/components/x-bte-kgs-operations/lipd-AFFECTS-cell-rev' +- $ref: '#/components/x-bte-kgs-operations/sbst-CAUSES-inpo' - $ref: '#/components/x-bte-kgs-operations/nsba-COEXISTS_WITH-orch-rev' - $ref: '#/components/x-bte-kgs-operations/gngm-CAUSES-inpo' - $ref: '#/components/x-bte-kgs-operations/aapp-INHIBITS-carb' @@ -2147,6 +2159,7 @@ x-bte-kgs-operations: - $ref: '#/components/x-bte-kgs-operations/bdsu-LOCATION_OF-imft' - $ref: '#/components/x-bte-kgs-operations/bdsu-LOCATION_OF-imft-rev' - $ref: '#/components/x-bte-kgs-operations/phsu-AFFECTS-tisu-rev' +- $ref: '#/components/x-bte-kgs-operations/anab-COEXISTS_WITH-neop' - $ref: '#/components/x-bte-kgs-operations/gngm_ncbigene-CAUSES-sosy_umls' - $ref: '#/components/x-bte-kgs-operations/gngm_ncbigene-CAUSES-sosy_umls-rev' - $ref: '#/components/x-bte-kgs-operations/orch-AFFECTS-moft-rev' @@ -2156,6 +2169,8 @@ x-bte-kgs-operations: - $ref: '#/components/x-bte-kgs-operations/topp-ADMINISTERED_TO-aggp' - $ref: '#/components/x-bte-kgs-operations/topp-ADMINISTERED_TO-aggp-rev' - $ref: '#/components/x-bte-kgs-operations/gngm-COEXISTS_WITH-orch' +- $ref: '#/components/x-bte-kgs-operations/sbst-AFFECTS-moft' +- $ref: '#/components/x-bte-kgs-operations/sbst-AFFECTS-moft-rev' - $ref: '#/components/x-bte-kgs-operations/gngm-DISRUPTS-cell' - $ref: '#/components/x-bte-kgs-operations/gngm-DISRUPTS-cell-rev' - $ref: '#/components/x-bte-kgs-operations/cgab-AFFECTS-orgf-rev' @@ -2167,6 +2182,7 @@ x-bte-kgs-operations: - $ref: '#/components/x-bte-kgs-operations/food-AFFECTS-celf' - $ref: '#/components/x-bte-kgs-operations/imft-PART_OF-emst' - $ref: '#/components/x-bte-kgs-operations/inch-INTERACTS_WITH-irda-rev' +- $ref: '#/components/x-bte-kgs-operations/cgab-COEXISTS_WITH-anab-rev' - $ref: '#/components/x-bte-kgs-operations/bacs-DISRUPTS-celc' - $ref: '#/components/x-bte-kgs-operations/bacs-DISRUPTS-celc-rev' - $ref: '#/components/x-bte-kgs-operations/horm-STIMULATES-aapp-rev' @@ -2287,6 +2303,7 @@ x-bte-kgs-operations: - $ref: '#/components/x-bte-kgs-operations/carb-AUGMENTS-moft-rev' - $ref: '#/components/x-bte-kgs-operations/inch-AUGMENTS-fndg-rev' - $ref: '#/components/x-bte-kgs-operations/aapp-PART_OF-neop' +- $ref: '#/components/x-bte-kgs-operations/aapp-PART_OF-neop-rev' - $ref: '#/components/x-bte-kgs-operations/hops-INHIBITS-nsba-rev' - $ref: '#/components/x-bte-kgs-operations/antb_umls-INTERACTS_WITH-aapp_ncbigene-rev' - $ref: '#/components/x-bte-kgs-operations/strd-AFFECTS-orgf-rev' @@ -2304,6 +2321,7 @@ x-bte-kgs-operations: - $ref: '#/components/x-bte-kgs-operations/comd-PROCESS_OF-emod-rev' - $ref: '#/components/x-bte-kgs-operations/carb-TREATS-dsyn-rev' - $ref: '#/components/x-bte-kgs-operations/cell-LOCATION_OF-horm' +- $ref: '#/components/x-bte-kgs-operations/anab-COEXISTS_WITH-patf' - $ref: '#/components/x-bte-kgs-operations/anab-COEXISTS_WITH-patf-rev' - $ref: '#/components/x-bte-kgs-operations/gngm_ncbigene-INTERACTS_WITH-hops_umls' - $ref: '#/components/x-bte-kgs-operations/horm-ASSOCIATED_WITH-sosy-rev' @@ -2350,6 +2368,7 @@ x-bte-kgs-operations: - $ref: '#/components/x-bte-kgs-operations/topp-DISRUPTS-inpo-rev' - $ref: '#/components/x-bte-kgs-operations/aapp-AUGMENTS-emst' - $ref: '#/components/x-bte-kgs-operations/aapp-CAUSES-anab' +- $ref: '#/components/x-bte-kgs-operations/aapp-CAUSES-anab-rev' - $ref: '#/components/x-bte-kgs-operations/orch-CAUSES-acab' - $ref: '#/components/x-bte-kgs-operations/nsba-AFFECTS-patf-rev' - $ref: '#/components/x-bte-kgs-operations/patf-AFFECTS-mobd' @@ -2472,6 +2491,7 @@ x-bte-kgs-operations: - $ref: '#/components/x-bte-kgs-operations/carb-AFFECTS-dsyn-rev' - $ref: '#/components/x-bte-kgs-operations/carb-PREDISPOSES-dsyn-rev' - $ref: '#/components/x-bte-kgs-operations/bacs-DISRUPTS-tisu' +- $ref: '#/components/x-bte-kgs-operations/sbst-CAUSES-comd' - $ref: '#/components/x-bte-kgs-operations/aapp_ncbigene-COEXISTS_WITH-lipd_umls' - $ref: '#/components/x-bte-kgs-operations/emst-PART_OF-neop-rev' - $ref: '#/components/x-bte-kgs-operations/sosy-ASSOCIATED_WITH-bact' @@ -2498,6 +2518,7 @@ x-bte-kgs-operations: - $ref: '#/components/x-bte-kgs-operations/comd-MANIFESTATION_OF-inpo-rev' - $ref: '#/components/x-bte-kgs-operations/dsyn-COMPLICATES-patf' - $ref: '#/components/x-bte-kgs-operations/dsyn-COMPLICATES-patf-rev' +- $ref: '#/components/x-bte-kgs-operations/anab-AFFECTS-orgf' - $ref: '#/components/x-bte-kgs-operations/anab-AFFECTS-orgf-rev' - $ref: '#/components/x-bte-kgs-operations/horm-DISRUPTS-patf-rev' - $ref: '#/components/x-bte-kgs-operations/strd-STIMULATES-bacs-rev' @@ -2602,7 +2623,6 @@ x-bte-kgs-operations: - $ref: '#/components/x-bte-kgs-operations/nnon-AFFECTS-celc-rev' - $ref: '#/components/x-bte-kgs-operations/gngm_ncbigene-DISRUPTS-patf_umls-rev' - $ref: '#/components/x-bte-kgs-operations/aapp-CAUSES-sosy' -- $ref: '#/components/x-bte-kgs-operations/aapp-CAUSES-sosy-rev' - $ref: '#/components/x-bte-kgs-operations/patf-MANIFESTATION_OF-orgf' - $ref: '#/components/x-bte-kgs-operations/patf-MANIFESTATION_OF-orgf-rev' - $ref: '#/components/x-bte-kgs-operations/aapp_ncbigene-AUGMENTS-patf_umls-rev' @@ -2616,8 +2636,10 @@ x-bte-kgs-operations: - $ref: '#/components/x-bte-kgs-operations/phsu_umls-COEXISTS_WITH-gngm_ncbigene-rev' - $ref: '#/components/x-bte-kgs-operations/horm-CAUSES-sosy-rev' - $ref: '#/components/x-bte-kgs-operations/tisu-LOCATION_OF-emod-rev' +- $ref: '#/components/x-bte-kgs-operations/sbst-CAUSES-mobd' - $ref: '#/components/x-bte-kgs-operations/bact-INTERACTS_WITH-fngs' - $ref: '#/components/x-bte-kgs-operations/bact-INTERACTS_WITH-fngs-rev' +- $ref: '#/components/x-bte-kgs-operations/anab-OCCURS_IN-aggp' - $ref: '#/components/x-bte-kgs-operations/anab-OCCURS_IN-aggp-rev' - $ref: '#/components/x-bte-kgs-operations/gngm_ncbigene-AUGMENTS-fndg_umls-rev' - $ref: '#/components/x-bte-kgs-operations/rcpt_umls-INTERACTS_WITH-aapp_ncbigene' @@ -2652,6 +2674,7 @@ x-bte-kgs-operations: - $ref: '#/components/x-bte-kgs-operations/virs-CAUSES-comd' - $ref: '#/components/x-bte-kgs-operations/aapp_ncbigene-AFFECTS-acab_umls' - $ref: '#/components/x-bte-kgs-operations/ortf-AFFECTS-biof-rev' +- $ref: '#/components/x-bte-kgs-operations/sbst-CAUSES-neop' - $ref: '#/components/x-bte-kgs-operations/rcpt-INHIBITS-gngm' - $ref: '#/components/x-bte-kgs-operations/rcpt-INHIBITS-gngm-rev' - $ref: '#/components/x-bte-kgs-operations/dora-PREDISPOSES-mobd' @@ -2681,6 +2704,7 @@ x-bte-kgs-operations: - $ref: '#/components/x-bte-kgs-operations/horm-AFFECTS-biof-rev' - $ref: '#/components/x-bte-kgs-operations/bdsu-LOCATION_OF-strd' - $ref: '#/components/x-bte-kgs-operations/irda-CAUSES-anab' +- $ref: '#/components/x-bte-kgs-operations/irda-CAUSES-anab-rev' - $ref: '#/components/x-bte-kgs-operations/aapp_ncbigene-PART_OF-aapp_umls-rev' - $ref: '#/components/x-bte-kgs-operations/diap_umls-USES-phsu_ncbigene' - $ref: '#/components/x-bte-kgs-operations/diap_umls-USES-phsu_ncbigene-rev' @@ -2753,6 +2777,7 @@ x-bte-kgs-operations: - $ref: '#/components/x-bte-kgs-operations/neop-PRODUCES-imft' - $ref: '#/components/x-bte-kgs-operations/neop-PRODUCES-imft-rev' - $ref: '#/components/x-bte-kgs-operations/sosy-DIAGNOSES-anab' +- $ref: '#/components/x-bte-kgs-operations/sosy-DIAGNOSES-anab-rev' - $ref: '#/components/x-bte-kgs-operations/food-ASSOCIATED_WITH-inpo' - $ref: '#/components/x-bte-kgs-operations/food-ASSOCIATED_WITH-inpo-rev' - $ref: '#/components/x-bte-kgs-operations/bacs-AUGMENTS-bpoc-rev' @@ -2853,6 +2878,7 @@ x-bte-kgs-operations: - $ref: '#/components/x-bte-kgs-operations/rcpt-STIMULATES-gngm' - $ref: '#/components/x-bte-kgs-operations/rcpt-STIMULATES-gngm-rev' - $ref: '#/components/x-bte-kgs-operations/aapp-TREATS-anab' +- $ref: '#/components/x-bte-kgs-operations/aapp-TREATS-anab-rev' - $ref: '#/components/x-bte-kgs-operations/elii-AFFECTS-comd-rev' - $ref: '#/components/x-bte-kgs-operations/rcpt-PART_OF-virs-rev' - $ref: '#/components/x-bte-kgs-operations/imft-STIMULATES-aapp' @@ -2891,6 +2917,7 @@ x-bte-kgs-operations: - $ref: '#/components/x-bte-kgs-operations/aapp_ncbigene-COEXISTS_WITH-nusq_umls-rev' - $ref: '#/components/x-bte-kgs-operations/food-CAUSES-comd' - $ref: '#/components/x-bte-kgs-operations/lipd-ASSOCIATED_WITH-sosy-rev' +- $ref: '#/components/x-bte-kgs-operations/anab-COEXISTS_WITH-acab' - $ref: '#/components/x-bte-kgs-operations/imft-COEXISTS_WITH-gngm' - $ref: '#/components/x-bte-kgs-operations/imft-COEXISTS_WITH-gngm-rev' - $ref: '#/components/x-bte-kgs-operations/sosy-DIAGNOSES-acab' @@ -2931,6 +2958,7 @@ x-bte-kgs-operations: - $ref: '#/components/x-bte-kgs-operations/elii-PREDISPOSES-dsyn-rev' - $ref: '#/components/x-bte-kgs-operations/food-CAUSES-mobd' - $ref: '#/components/x-bte-kgs-operations/medd-CAUSES-anab' +- $ref: '#/components/x-bte-kgs-operations/medd-CAUSES-anab-rev' - $ref: '#/components/x-bte-kgs-operations/strd-PART_OF-fngs-rev' - $ref: '#/components/x-bte-kgs-operations/inch-AUGMENTS-biof-rev' - $ref: '#/components/x-bte-kgs-operations/gngm-PRODUCES-gngm' @@ -2979,10 +3007,12 @@ x-bte-kgs-operations: - $ref: '#/components/x-bte-kgs-operations/rcpt-COEXISTS_WITH-gngm' - $ref: '#/components/x-bte-kgs-operations/rcpt-COEXISTS_WITH-gngm-rev' - $ref: '#/components/x-bte-kgs-operations/hops-INTERACTS_WITH-gngm-rev' +- $ref: '#/components/x-bte-kgs-operations/acab-COEXISTS_WITH-anab-rev' - $ref: '#/components/x-bte-kgs-operations/aapp_ncbigene-PRODUCES-aapp_ncbigene-rev' - $ref: '#/components/x-bte-kgs-operations/opco-DISRUPTS-orgf-rev' - $ref: '#/components/x-bte-kgs-operations/gngm_ncbigene-DISRUPTS-comd_umls' - $ref: '#/components/x-bte-kgs-operations/inch-PREDISPOSES-inpo-rev' +- $ref: '#/components/x-bte-kgs-operations/anab-PART_OF-fngs' - $ref: '#/components/x-bte-kgs-operations/anab-PART_OF-fngs-rev' - $ref: '#/components/x-bte-kgs-operations/gngm-DISRUPTS-dsyn' - $ref: '#/components/x-bte-kgs-operations/inch-AUGMENTS-celc-rev' @@ -3015,6 +3045,7 @@ x-bte-kgs-operations: - $ref: '#/components/x-bte-kgs-operations/comd-MANIFESTATION_OF-celf' - $ref: '#/components/x-bte-kgs-operations/comd-MANIFESTATION_OF-celf-rev' - $ref: '#/components/x-bte-kgs-operations/comd-PRODUCES-imft-rev' +- $ref: '#/components/x-bte-kgs-operations/anab-AFFECTS-ortf' - $ref: '#/components/x-bte-kgs-operations/gngm-INTERACTS_WITH-carb' - $ref: '#/components/x-bte-kgs-operations/eico-CONVERTS_TO-eico' - $ref: '#/components/x-bte-kgs-operations/gngm-PRODUCES-strd' @@ -3025,6 +3056,7 @@ x-bte-kgs-operations: - $ref: '#/components/x-bte-kgs-operations/imft-ADMINISTERED_TO-aggp-rev' - $ref: '#/components/x-bte-kgs-operations/bacs-DISRUPTS-sosy-rev' - $ref: '#/components/x-bte-kgs-operations/aapp_ncbigene-INTERACTS_WITH-strd_umls' +- $ref: '#/components/x-bte-kgs-operations/anab-COEXISTS_WITH-mobd' - $ref: '#/components/x-bte-kgs-operations/gngm_ncbigene-PRODUCES-bdsu_umls' - $ref: '#/components/x-bte-kgs-operations/gngm_ncbigene-PRODUCES-bdsu_umls-rev' - $ref: '#/components/x-bte-kgs-operations/aapp-INHIBITS-strd' @@ -3164,6 +3196,7 @@ x-bte-kgs-operations: - $ref: '#/components/x-bte-kgs-operations/orch-DISRUPTS-mobd' - $ref: '#/components/x-bte-kgs-operations/aapp_ncbigene-INHIBITS-phsu_umls' - $ref: '#/components/x-bte-kgs-operations/topp-USES-inch' +- $ref: '#/components/x-bte-kgs-operations/anab-LOCATION_OF-bact' - $ref: '#/components/x-bte-kgs-operations/anab-LOCATION_OF-bact-rev' - $ref: '#/components/x-bte-kgs-operations/cell-PRODUCES-carb' - $ref: '#/components/x-bte-kgs-operations/diap_umls-USES-irda_ncbigene' @@ -3194,6 +3227,7 @@ x-bte-kgs-operations: - $ref: '#/components/x-bte-kgs-operations/carb-DISRUPTS-patf-rev' - $ref: '#/components/x-bte-kgs-operations/opco-AUGMENTS-cell-rev' - $ref: '#/components/x-bte-kgs-operations/hops-INTERACTS_WITH-irda-rev' +- $ref: '#/components/x-bte-kgs-operations/anab-PART_OF-aggp' - $ref: '#/components/x-bte-kgs-operations/anab-PART_OF-aggp-rev' - $ref: '#/components/x-bte-kgs-operations/aapp_ncbigene-STIMULATES-imft_umls' - $ref: '#/components/x-bte-kgs-operations/aapp_ncbigene-STIMULATES-imft_umls-rev' @@ -3277,7 +3311,6 @@ x-bte-kgs-operations: - $ref: '#/components/x-bte-kgs-operations/gngm-INTERACTS_WITH-rcpt' - $ref: '#/components/x-bte-kgs-operations/gngm-INTERACTS_WITH-rcpt-rev' - $ref: '#/components/x-bte-kgs-operations/aapp-TREATS-sosy' -- $ref: '#/components/x-bte-kgs-operations/aapp-TREATS-sosy-rev' - $ref: '#/components/x-bte-kgs-operations/aapp-CONVERTS_TO-aapp' - $ref: '#/components/x-bte-kgs-operations/aapp-CONVERTS_TO-aapp-rev' - $ref: '#/components/x-bte-kgs-operations/strd-AFFECTS-cell-rev' @@ -3337,6 +3370,7 @@ x-bte-kgs-operations: - $ref: '#/components/x-bte-kgs-operations/imft-COEXISTS_WITH-inch' - $ref: '#/components/x-bte-kgs-operations/food-AFFECTS-mobd' - $ref: '#/components/x-bte-kgs-operations/phsu-STIMULATES-moft-rev' +- $ref: '#/components/x-bte-kgs-operations/anab-AFFECTS-celf' - $ref: '#/components/x-bte-kgs-operations/aapp-COEXISTS_WITH-eico' - $ref: '#/components/x-bte-kgs-operations/bact-LOCATION_OF-rcpt' - $ref: '#/components/x-bte-kgs-operations/bact-LOCATION_OF-rcpt-rev' @@ -3356,6 +3390,7 @@ x-bte-kgs-operations: - $ref: '#/components/x-bte-kgs-operations/inch-AFFECTS-sosy-rev' - $ref: '#/components/x-bte-kgs-operations/topp-USES-horm' - $ref: '#/components/x-bte-kgs-operations/aapp-PREVENTS-anab' +- $ref: '#/components/x-bte-kgs-operations/aapp-PREVENTS-anab-rev' - $ref: '#/components/x-bte-kgs-operations/diap-USES-clnd-rev' - $ref: '#/components/x-bte-kgs-operations/neop-CAUSES-orgf-rev' - $ref: '#/components/x-bte-kgs-operations/celc-LOCATION_OF-emod' @@ -3374,7 +3409,6 @@ x-bte-kgs-operations: - $ref: '#/components/x-bte-kgs-operations/gngm_ncbigene-PRODUCES-carb_umls' - $ref: '#/components/x-bte-kgs-operations/aapp-INHIBITS-fndg' - $ref: '#/components/x-bte-kgs-operations/aapp-INHIBITS-fndg-rev' -- $ref: '#/components/x-bte-kgs-operations/anab-COEXISTS_WITH-sosy-rev' - $ref: '#/components/x-bte-kgs-operations/nsba-CONVERTS_TO-orch-rev' - $ref: '#/components/x-bte-kgs-operations/nnon-CAUSES-sosy-rev' - $ref: '#/components/x-bte-kgs-operations/elii-COEXISTS_WITH-imft-rev' @@ -3411,10 +3445,12 @@ x-bte-kgs-operations: - $ref: '#/components/x-bte-kgs-operations/bacs-AUGMENTS-fndg-rev' - $ref: '#/components/x-bte-kgs-operations/aapp-COEXISTS_WITH-opco' - $ref: '#/components/x-bte-kgs-operations/eico-INHIBITS-aapp-rev' +- $ref: '#/components/x-bte-kgs-operations/sbst-CAUSES-acab' - $ref: '#/components/x-bte-kgs-operations/nnon-INHIBITS-gngm-rev' - $ref: '#/components/x-bte-kgs-operations/clnd-TREATS-acab' - $ref: '#/components/x-bte-kgs-operations/orch-STIMULATES-nusq' - $ref: '#/components/x-bte-kgs-operations/orch-STIMULATES-nusq-rev' +- $ref: '#/components/x-bte-kgs-operations/anab-PART_OF-bact' - $ref: '#/components/x-bte-kgs-operations/anab-PART_OF-bact-rev' - $ref: '#/components/x-bte-kgs-operations/cell-LOCATION_OF-antb' - $ref: '#/components/x-bte-kgs-operations/bact-LOCATION_OF-opco' @@ -3450,6 +3486,7 @@ x-bte-kgs-operations: - $ref: '#/components/x-bte-kgs-operations/hops-DISRUPTS-celc-rev' - $ref: '#/components/x-bte-kgs-operations/bdsu_umls-LOCATION_OF-bacs_ncbigene' - $ref: '#/components/x-bte-kgs-operations/dsyn-COMPLICATES-anab' +- $ref: '#/components/x-bte-kgs-operations/dsyn-COMPLICATES-anab-rev' - $ref: '#/components/x-bte-kgs-operations/hops-AUGMENTS-sosy-rev' - $ref: '#/components/x-bte-kgs-operations/hops-CAUSES-celf-rev' - $ref: '#/components/x-bte-kgs-operations/irda-INTERACTS_WITH-horm' @@ -3615,6 +3652,7 @@ x-bte-kgs-operations: - $ref: '#/components/x-bte-kgs-operations/bacs-STIMULATES-nusq-rev' - $ref: '#/components/x-bte-kgs-operations/aapp_ncbigene-DISRUPTS-sosy_umls' - $ref: '#/components/x-bte-kgs-operations/aapp_ncbigene-DISRUPTS-sosy_umls-rev' +- $ref: '#/components/x-bte-kgs-operations/anab-LOCATION_OF-fngs' - $ref: '#/components/x-bte-kgs-operations/anab-LOCATION_OF-fngs-rev' - $ref: '#/components/x-bte-kgs-operations/bacs-CONVERTS_TO-imft' - $ref: '#/components/x-bte-kgs-operations/bacs-CONVERTS_TO-imft-rev' @@ -3675,6 +3713,7 @@ x-bte-kgs-operations: - $ref: '#/components/x-bte-kgs-operations/elii-DISRUPTS-celc-rev' - $ref: '#/components/x-bte-kgs-operations/bdsu-CAUSES-neop' - $ref: '#/components/x-bte-kgs-operations/dsyn-COMPLICATES-acab' +- $ref: '#/components/x-bte-kgs-operations/strd-CAUSES-anab-rev' - $ref: '#/components/x-bte-kgs-operations/cgab-CAUSES-patf-rev' - $ref: '#/components/x-bte-kgs-operations/horm-AUGMENTS-bpoc-rev' - $ref: '#/components/x-bte-kgs-operations/inch-PREVENTS-dsyn-rev' @@ -3685,15 +3724,18 @@ x-bte-kgs-operations: - $ref: '#/components/x-bte-kgs-operations/celc-LOCATION_OF-antb' - $ref: '#/components/x-bte-kgs-operations/bpoc_umls-LOCATION_OF-nsba_ncbigene' - $ref: '#/components/x-bte-kgs-operations/sosy-MANIFESTATION_OF-anab' +- $ref: '#/components/x-bte-kgs-operations/sosy-MANIFESTATION_OF-anab-rev' - $ref: '#/components/x-bte-kgs-operations/patf-COMPLICATES-patf' - $ref: '#/components/x-bte-kgs-operations/patf-COMPLICATES-patf-rev' - $ref: '#/components/x-bte-kgs-operations/aapp_umls-same_as-aapp_ncbigene' - $ref: '#/components/x-bte-kgs-operations/aapp_umls-same_as-aapp_ncbigene-rev' - $ref: '#/components/x-bte-kgs-operations/bpoc-LOCATION_OF-nnon' - $ref: '#/components/x-bte-kgs-operations/bacs-PREDISPOSES-sosy-rev' +- $ref: '#/components/x-bte-kgs-operations/anab-LOCATION_OF-virs' - $ref: '#/components/x-bte-kgs-operations/anab-LOCATION_OF-virs-rev' - $ref: '#/components/x-bte-kgs-operations/nusq-COEXISTS_WITH-elii' - $ref: '#/components/x-bte-kgs-operations/elii-DISRUPTS-cell-rev' +- $ref: '#/components/x-bte-kgs-operations/strd-TREATS-anab-rev' - $ref: '#/components/x-bte-kgs-operations/carb-DISRUPTS-cell-rev' - $ref: '#/components/x-bte-kgs-operations/antb-AFFECTS-sosy-rev' - $ref: '#/components/x-bte-kgs-operations/imft-CONVERTS_TO-gngm' @@ -3715,7 +3757,6 @@ x-bte-kgs-operations: - $ref: '#/components/x-bte-kgs-operations/antb-same_as-antb-rev' - $ref: '#/components/x-bte-kgs-operations/topp-PRECEDES-horm' - $ref: '#/components/x-bte-kgs-operations/bacs_ncbigene-INTERACTS_WITH-aapp_umls-rev' -- $ref: '#/components/x-bte-kgs-operations/sosy-COEXISTS_WITH-anab' - $ref: '#/components/x-bte-kgs-operations/gngm-STIMULATES-horm' - $ref: '#/components/x-bte-kgs-operations/comd-PRECEDES-comd-rev' - $ref: '#/components/x-bte-kgs-operations/gngm-INHIBITS-inch' @@ -3833,6 +3874,7 @@ x-bte-kgs-operations: - $ref: '#/components/x-bte-kgs-operations/gngm_ncbigene-COEXISTS_WITH-rcpt_umls-rev' - $ref: '#/components/x-bte-kgs-operations/celf-PRODUCES-bdsu-rev' - $ref: '#/components/x-bte-kgs-operations/rcpt-INTERACTS_WITH-phsu' +- $ref: '#/components/x-bte-kgs-operations/anab-LOCATION_OF-emod' - $ref: '#/components/x-bte-kgs-operations/anab-LOCATION_OF-emod-rev' - $ref: '#/components/x-bte-kgs-operations/aapp_ncbigene-AUGMENTS-sosy_umls' - $ref: '#/components/x-bte-kgs-operations/aapp_ncbigene-AUGMENTS-sosy_umls-rev' @@ -3854,6 +3896,7 @@ x-bte-kgs-operations: - $ref: '#/components/x-bte-kgs-operations/aapp_ncbigene-CONVERTS_TO-gngm_ncbigene-rev' - $ref: '#/components/x-bte-kgs-operations/bacs-AUGMENTS-celc-rev' - $ref: '#/components/x-bte-kgs-operations/nsba-AUGMENTS-fndg-rev' +- $ref: '#/components/x-bte-kgs-operations/anab-COMPLICATES-anab' - $ref: '#/components/x-bte-kgs-operations/anab-COMPLICATES-anab-rev' - $ref: '#/components/x-bte-kgs-operations/nusq-CAUSES-comd' - $ref: '#/components/x-bte-kgs-operations/strd_umls-COEXISTS_WITH-gngm_ncbigene-rev' @@ -3898,7 +3941,6 @@ x-bte-kgs-operations: - $ref: '#/components/x-bte-kgs-operations/nusq-CONVERTS_TO-bacs' - $ref: '#/components/x-bte-kgs-operations/nusq-CONVERTS_TO-bacs-rev' - $ref: '#/components/x-bte-kgs-operations/patf-COEXISTS_WITH-sosy' -- $ref: '#/components/x-bte-kgs-operations/patf-COEXISTS_WITH-sosy-rev' - $ref: '#/components/x-bte-kgs-operations/acab-MANIFESTATION_OF-celf-rev' - $ref: '#/components/x-bte-kgs-operations/irda-INHIBITS-gngm' - $ref: '#/components/x-bte-kgs-operations/irda-INHIBITS-gngm-rev' @@ -4085,6 +4127,8 @@ x-bte-kgs-operations: - $ref: '#/components/x-bte-kgs-operations/carb-AFFECTS-moft-rev' - $ref: '#/components/x-bte-kgs-operations/gngm_umls-CONVERTS_TO-gngm_ncbigene' - $ref: '#/components/x-bte-kgs-operations/gngm_umls-CONVERTS_TO-gngm_ncbigene-rev' +- $ref: '#/components/x-bte-kgs-operations/sbst-CAUSES-anab' +- $ref: '#/components/x-bte-kgs-operations/sbst-CAUSES-anab-rev' - $ref: '#/components/x-bte-kgs-operations/imft-CAUSES-celf' - $ref: '#/components/x-bte-kgs-operations/imft-CAUSES-celf-rev' - $ref: '#/components/x-bte-kgs-operations/tisu-LOCATION_OF-irda-rev' @@ -4093,6 +4137,7 @@ x-bte-kgs-operations: - $ref: '#/components/x-bte-kgs-operations/antb-PREDISPOSES-sosy-rev' - $ref: '#/components/x-bte-kgs-operations/lipd-COEXISTS_WITH-nusq-rev' - $ref: '#/components/x-bte-kgs-operations/gngm_ncbigene-DISRUPTS-sosy_umls-rev' +- $ref: '#/components/x-bte-kgs-operations/mobd-COEXISTS_WITH-anab-rev' - $ref: '#/components/x-bte-kgs-operations/horm_ncbigene-STIMULATES-gngm_umls-rev' - $ref: '#/components/x-bte-kgs-operations/imft-AUGMENTS-neop' - $ref: '#/components/x-bte-kgs-operations/aapp-STIMULATES-enzy' @@ -4174,6 +4219,7 @@ x-bte-kgs-operations: - $ref: '#/components/x-bte-kgs-operations/virs_umls-LOCATION_OF-gngm_ncbigene' - $ref: '#/components/x-bte-kgs-operations/inch-AFFECTS-anst-rev' - $ref: '#/components/x-bte-kgs-operations/bdsu-CAUSES-anab' +- $ref: '#/components/x-bte-kgs-operations/bdsu-CAUSES-anab-rev' - $ref: '#/components/x-bte-kgs-operations/topp-USES-irda-rev' - $ref: '#/components/x-bte-kgs-operations/phsu-PART_OF-celc-rev' - $ref: '#/components/x-bte-kgs-operations/topp-DISRUPTS-emst' @@ -4306,6 +4352,7 @@ x-bte-kgs-operations: - $ref: '#/components/x-bte-kgs-operations/bacs_ncbigene-COEXISTS_WITH-aapp_umls-rev' - $ref: '#/components/x-bte-kgs-operations/eico-CONVERTS_TO-gngm-rev' - $ref: '#/components/x-bte-kgs-operations/clnd-TREATS-anab' +- $ref: '#/components/x-bte-kgs-operations/clnd-TREATS-anab-rev' - $ref: '#/components/x-bte-kgs-operations/elii-AUGMENTS-sosy-rev' - $ref: '#/components/x-bte-kgs-operations/phsu_ncbigene-CAUSES-celf_umls-rev' - $ref: '#/components/x-bte-kgs-operations/carb-COEXISTS_WITH-rcpt-rev' @@ -4327,6 +4374,7 @@ x-bte-kgs-operations: - $ref: '#/components/x-bte-kgs-operations/strd-COEXISTS_WITH-nusq-rev' - $ref: '#/components/x-bte-kgs-operations/carb-TREATS-sosy-rev' - $ref: '#/components/x-bte-kgs-operations/food-CAUSES-anab' +- $ref: '#/components/x-bte-kgs-operations/food-CAUSES-anab-rev' - $ref: '#/components/x-bte-kgs-operations/aapp-CONVERTS_TO-nusq' - $ref: '#/components/x-bte-kgs-operations/aapp-CONVERTS_TO-nusq-rev' - $ref: '#/components/x-bte-kgs-operations/virs-LOCATION_OF-inch' @@ -4338,11 +4386,14 @@ x-bte-kgs-operations: - $ref: '#/components/x-bte-kgs-operations/acab-MANIFESTATION_OF-patf-rev' - $ref: '#/components/x-bte-kgs-operations/rcpt-COEXISTS_WITH-orch' - $ref: '#/components/x-bte-kgs-operations/strd-DISRUPTS-sosy-rev' +- $ref: '#/components/x-bte-kgs-operations/sbst-CAUSES-cgab' - $ref: '#/components/x-bte-kgs-operations/fngs-INTERACTS_WITH-virs' - $ref: '#/components/x-bte-kgs-operations/fngs-INTERACTS_WITH-virs-rev' - $ref: '#/components/x-bte-kgs-operations/aapp_ncbigene-PART_OF-anab_umls' +- $ref: '#/components/x-bte-kgs-operations/aapp_ncbigene-PART_OF-anab_umls-rev' - $ref: '#/components/x-bte-kgs-operations/celf-PRODUCES-rcpt' - $ref: '#/components/x-bte-kgs-operations/patf-COMPLICATES-anab' +- $ref: '#/components/x-bte-kgs-operations/patf-COMPLICATES-anab-rev' - $ref: '#/components/x-bte-kgs-operations/nusq-COEXISTS_WITH-lipd' - $ref: '#/components/x-bte-kgs-operations/dsyn-COEXISTS_WITH-emod-rev' - $ref: '#/components/x-bte-kgs-operations/celc-PRODUCES-gngm' @@ -4355,6 +4406,7 @@ x-bte-kgs-operations: - $ref: '#/components/x-bte-kgs-operations/imft-AUGMENTS-cell-rev' - $ref: '#/components/x-bte-kgs-operations/aapp_ncbigene-CAUSES-anab_umls' - $ref: '#/components/x-bte-kgs-operations/aapp-INHIBITS-enzy' +- $ref: '#/components/x-bte-kgs-operations/anab-AFFECTS-phsf' - $ref: '#/components/x-bte-kgs-operations/nsba_ncbigene-DISRUPTS-ortf_umls-rev' - $ref: '#/components/x-bte-kgs-operations/vita-AFFECTS-moft-rev' - $ref: '#/components/x-bte-kgs-operations/horm-same_as-horm' @@ -4582,7 +4634,6 @@ x-bte-kgs-operations: - $ref: '#/components/x-bte-kgs-operations/enzy-PART_OF-fngs' - $ref: '#/components/x-bte-kgs-operations/enzy-PART_OF-fngs-rev' - $ref: '#/components/x-bte-kgs-operations/topp-PRECEDES-bacs' -- $ref: '#/components/x-bte-kgs-operations/strd-CAUSES-sosy-rev' - $ref: '#/components/x-bte-kgs-operations/vita-PREVENTS-inpo-rev' - $ref: '#/components/x-bte-kgs-operations/phsu_ncbigene-PREVENTS-comd_umls' - $ref: '#/components/x-bte-kgs-operations/phsu_ncbigene-PREVENTS-comd_umls-rev' @@ -4612,7 +4663,6 @@ x-bte-kgs-operations: - $ref: '#/components/x-bte-kgs-operations/nnon-AFFECTS-moft-rev' - $ref: '#/components/x-bte-kgs-operations/imft-AUGMENTS-phsf' - $ref: '#/components/x-bte-kgs-operations/nnon-AUGMENTS-sosy-rev' -- $ref: '#/components/x-bte-kgs-operations/sosy-COEXISTS_WITH-cgab' - $ref: '#/components/x-bte-kgs-operations/horm-COEXISTS_WITH-rcpt-rev' - $ref: '#/components/x-bte-kgs-operations/nusq-INHIBITS-rcpt' - $ref: '#/components/x-bte-kgs-operations/nusq-INHIBITS-rcpt-rev' @@ -4693,6 +4743,7 @@ x-bte-kgs-operations: - $ref: '#/components/x-bte-kgs-operations/nusq-DISRUPTS-orgf-rev' - $ref: '#/components/x-bte-kgs-operations/enzy-INTERACTS_WITH-irda-rev' - $ref: '#/components/x-bte-kgs-operations/enzy_umls-INTERACTS_WITH-aapp_ncbigene-rev' +- $ref: '#/components/x-bte-kgs-operations/anab-AFFECTS-bact' - $ref: '#/components/x-bte-kgs-operations/anab-AFFECTS-bact-rev' - $ref: '#/components/x-bte-kgs-operations/medd-USES-carb' - $ref: '#/components/x-bte-kgs-operations/nsba-DISRUPTS-celc-rev' @@ -4700,6 +4751,7 @@ x-bte-kgs-operations: - $ref: '#/components/x-bte-kgs-operations/irda-INHIBITS-inch' - $ref: '#/components/x-bte-kgs-operations/irda-INHIBITS-inch-rev' - $ref: '#/components/x-bte-kgs-operations/horm_ncbigene-TREATS-anab_umls' +- $ref: '#/components/x-bte-kgs-operations/horm_ncbigene-TREATS-anab_umls-rev' - $ref: '#/components/x-bte-kgs-operations/bdsu-LOCATION_OF-vita' - $ref: '#/components/x-bte-kgs-operations/rcpt-PART_OF-fngs-rev' - $ref: '#/components/x-bte-kgs-operations/strd-COEXISTS_WITH-gngm-rev' diff --git a/semmeddb/generated_operations.yaml b/semmeddb/generated_operations.yaml index c3b15398..dc3cd711 100644 --- a/semmeddb/generated_operations.yaml +++ b/semmeddb/generated_operations.yaml @@ -19,6 +19,8 @@ x-bte-kgs-operations: semantic: Disease predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-LOCATION_OF-neop-rev: @@ -41,6 +43,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bdsu-LOCATION_OF-aapp: @@ -63,6 +67,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bdsu-LOCATION_OF-aapp-rev: @@ -85,6 +91,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-LOCATION_OF-patf: @@ -107,6 +115,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-LOCATION_OF-patf-rev: @@ -129,6 +139,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-TREATS-dsyn: @@ -149,8 +161,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-TREATS-dsyn-rev: @@ -171,8 +185,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Procedure - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-TREATS-neop: @@ -193,8 +209,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-LOCATION_OF-dsyn: @@ -217,6 +235,8 @@ x-bte-kgs-operations: semantic: Disease predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-LOCATION_OF-fndg: @@ -239,6 +259,8 @@ x-bte-kgs-operations: semantic: DiseaseOrPhenotypicFeature predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-LOCATION_OF-fndg-rev: @@ -261,6 +283,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell-PART_OF-bpoc: @@ -283,6 +307,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-PART_OF-bpoc-rev: @@ -305,6 +331,8 @@ x-bte-kgs-operations: semantic: Cell predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-LOCATION_OF-aapp: @@ -327,6 +355,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-LOCATION_OF-aapp-rev: @@ -349,6 +379,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-TREATS-dsyn: @@ -369,8 +401,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-TREATS-dsyn-rev: @@ -391,8 +425,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-PART_OF-bpoc: @@ -415,6 +451,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-PART_OF-bpoc-rev: @@ -437,6 +475,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell-LOCATION_OF-aapp: @@ -459,6 +499,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-LOCATION_OF-aapp-rev: @@ -481,6 +523,8 @@ x-bte-kgs-operations: semantic: Cell predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-USES-phsu: @@ -503,6 +547,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_input source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-USES-phsu-rev: @@ -525,6 +571,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: is_input_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-LOCATION_OF-diap: @@ -547,6 +595,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-LOCATION_OF-diap-rev: @@ -569,6 +619,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-LOCATION_OF-inpo: @@ -591,6 +643,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' tisu-PART_OF-bpoc-rev: @@ -613,6 +667,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bdsu-LOCATION_OF-bacs: @@ -635,6 +691,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bdsu-LOCATION_OF-bacs-rev: @@ -657,6 +715,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell-LOCATION_OF-celf: @@ -679,6 +739,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-LOCATION_OF-celf-rev: @@ -701,6 +763,8 @@ x-bte-kgs-operations: semantic: Cell predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-PART_OF-aapp: @@ -723,6 +787,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-PART_OF-aapp-rev: @@ -745,6 +811,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-USES-medd: @@ -767,6 +835,8 @@ x-bte-kgs-operations: semantic: Device predicate: has_input source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-USES-medd-rev: @@ -789,6 +859,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: is_input_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-ASSOCIATED_WITH-dsyn: @@ -811,6 +883,8 @@ x-bte-kgs-operations: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-ASSOCIATED_WITH-dsyn-rev: @@ -833,6 +907,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-USES-aapp: @@ -855,6 +931,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: has_input source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-USES-aapp-rev: @@ -877,6 +955,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: is_input_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' tisu-LOCATION_OF-aapp-rev: @@ -899,6 +979,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-INTERACTS_WITH-aapp: @@ -921,6 +1003,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-INTERACTS_WITH-aapp-rev: @@ -943,6 +1027,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-COEXISTS_WITH-dsyn: @@ -965,6 +1051,8 @@ x-bte-kgs-operations: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-COEXISTS_WITH-dsyn-rev: @@ -987,6 +1075,8 @@ x-bte-kgs-operations: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-STIMULATES-gngm: @@ -1009,6 +1099,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -1035,6 +1127,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -1061,6 +1155,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-LOCATION_OF-aapp-rev: @@ -1083,6 +1179,8 @@ x-bte-kgs-operations: semantic: CellularComponent predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bdsu-LOCATION_OF-orch: @@ -1105,6 +1203,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PART_OF-celc: @@ -1127,6 +1227,8 @@ x-bte-kgs-operations: semantic: CellularComponent predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PART_OF-celc-rev: @@ -1149,6 +1251,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-PRECEDES-topp: @@ -1171,6 +1275,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-PRECEDES-topp-rev: @@ -1193,6 +1299,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' blor-LOCATION_OF-neop: @@ -1215,6 +1323,8 @@ x-bte-kgs-operations: semantic: Disease predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' blor-LOCATION_OF-neop-rev: @@ -1237,6 +1347,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bdsu_umls-LOCATION_OF-aapp_ncbigene: @@ -1259,6 +1371,8 @@ x-bte-kgs-operations: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' bdsu_umls-LOCATION_OF-aapp_ncbigene-rev: @@ -1281,6 +1395,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' diap-DIAGNOSES-dsyn: @@ -1303,6 +1419,8 @@ x-bte-kgs-operations: semantic: Disease predicate: diagnoses source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' diap-DIAGNOSES-dsyn-rev: @@ -1325,6 +1443,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: is_diagnosed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PART_OF-bpoc: @@ -1347,6 +1467,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PART_OF-bpoc-rev: @@ -1369,6 +1491,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-ASSOCIATED_WITH-neop: @@ -1391,6 +1515,8 @@ x-bte-kgs-operations: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-LOCATION_OF-orch: @@ -1413,6 +1539,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-LOCATION_OF-orch-rev: @@ -1435,6 +1563,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-LOCATION_OF-anab: @@ -1454,11 +1584,37 @@ x-bte-kgs-operations: _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' + bpoc-LOCATION_OF-anab-rev: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: object.umls + parameters: + fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc AND + _exists_:subject.umls AND pmid_count:>3 + outputs: + - id: UMLS + semantic: GrossAnatomicalStructure + predicate: located_in + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' blor-LOCATION_OF-dsyn: - supportBatch: True useTemplating: True @@ -1479,6 +1635,8 @@ x-bte-kgs-operations: semantic: Disease predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-TREATS-neop: @@ -1499,8 +1657,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc_umls-LOCATION_OF-aapp_ncbigene: @@ -1523,6 +1683,8 @@ x-bte-kgs-operations: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' bpoc_umls-LOCATION_OF-aapp_ncbigene-rev: @@ -1545,6 +1707,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell_umls-LOCATION_OF-aapp_ncbigene: @@ -1567,6 +1731,8 @@ x-bte-kgs-operations: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' cell_umls-LOCATION_OF-aapp_ncbigene-rev: @@ -1589,6 +1755,8 @@ x-bte-kgs-operations: semantic: Cell predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celc-PART_OF-cell: @@ -1611,6 +1779,8 @@ x-bte-kgs-operations: semantic: Cell predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-PART_OF-cell-rev: @@ -1633,6 +1803,8 @@ x-bte-kgs-operations: semantic: CellularComponent predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell-PRODUCES-aapp: @@ -1655,6 +1827,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-PRODUCES-aapp-rev: @@ -1677,6 +1851,8 @@ x-bte-kgs-operations: semantic: Cell predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-LOCATION_OF-bacs: @@ -1699,6 +1875,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-CAUSES-dsyn: @@ -1721,6 +1899,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-CAUSES-dsyn-rev: @@ -1743,6 +1923,8 @@ x-bte-kgs-operations: semantic: Disease predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-AFFECTS-celf: @@ -1765,6 +1947,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AFFECTS-celf-rev: @@ -1787,6 +1971,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-PART_OF-celc: @@ -1809,6 +1995,8 @@ x-bte-kgs-operations: semantic: CellularComponent predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-PART_OF-celc-rev: @@ -1831,6 +2019,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-LOCATION_OF-sosy: @@ -1853,30 +2043,10 @@ x-bte-kgs-operations: semantic: PhenotypicFeature predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' - bpoc-LOCATION_OF-sosy-rev: - - supportBatch: True - useTemplating: True - inputs: - - id: UMLS - semantic: PhenotypicFeature - requestBody: - body: - q: '{{ queryInputs }}' - scopes: object.umls - parameters: - fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name - size: 1000 - filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc AND - _exists_:subject.umls AND pmid_count:>3 - outputs: - - id: UMLS - semantic: GrossAnatomicalStructure - predicate: located_in - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' blor-LOCATION_OF-diap: - supportBatch: True useTemplating: True @@ -1897,6 +2067,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' blor-LOCATION_OF-diap-rev: @@ -1919,6 +2091,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' blor-LOCATION_OF-bpoc: @@ -1941,6 +2115,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' blor-LOCATION_OF-bpoc-rev: @@ -1963,6 +2139,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' tisu-LOCATION_OF-topp: @@ -1985,6 +2163,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' tisu-LOCATION_OF-topp-rev: @@ -2007,6 +2187,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' patf-COEXISTS_WITH-dsyn: @@ -2029,6 +2211,8 @@ x-bte-kgs-operations: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-COEXISTS_WITH-dsyn-rev: @@ -2051,6 +2235,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celc-PART_OF-bpoc: @@ -2073,6 +2259,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-PART_OF-bpoc-rev: @@ -2095,6 +2283,8 @@ x-bte-kgs-operations: semantic: CellularComponent predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-ASSOCIATED_WITH-neop: @@ -2117,6 +2307,8 @@ x-bte-kgs-operations: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-ASSOCIATED_WITH-neop-rev: @@ -2139,6 +2331,8 @@ x-bte-kgs-operations: semantic: Gene predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' tisu-PART_OF-neop: @@ -2161,6 +2355,8 @@ x-bte-kgs-operations: semantic: Disease predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' tisu-PART_OF-neop-rev: @@ -2183,6 +2379,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' moft-PROCESS_OF-cell: @@ -2205,6 +2403,8 @@ x-bte-kgs-operations: semantic: Cell predicate: occurs_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' moft-PROCESS_OF-cell-rev: @@ -2227,6 +2427,8 @@ x-bte-kgs-operations: semantic: MolecularActivity predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-LOCATION_OF-acab: @@ -2249,6 +2451,8 @@ x-bte-kgs-operations: semantic: Disease predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-INHIBITS-aapp: @@ -2271,6 +2475,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -2297,6 +2503,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -2321,8 +2529,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PathologicalProcess - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-TREATS-patf-rev: @@ -2343,8 +2553,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Procedure - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' diap-DIAGNOSES-neop: @@ -2367,6 +2579,8 @@ x-bte-kgs-operations: semantic: Disease predicate: diagnoses source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fndg-COEXISTS_WITH-dsyn: @@ -2389,6 +2603,8 @@ x-bte-kgs-operations: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fndg-COEXISTS_WITH-dsyn-rev: @@ -2411,6 +2627,8 @@ x-bte-kgs-operations: semantic: DiseaseOrPhenotypicFeature predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' blor-LOCATION_OF-fndg: @@ -2433,6 +2651,8 @@ x-bte-kgs-operations: semantic: DiseaseOrPhenotypicFeature predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' blor-LOCATION_OF-fndg-rev: @@ -2455,6 +2675,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' plnt-LOCATION_OF-aapp: @@ -2477,6 +2699,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' plnt-LOCATION_OF-aapp-rev: @@ -2499,6 +2723,8 @@ x-bte-kgs-operations: semantic: Plant predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs_umls-PART_OF-aapp_ncbigene: @@ -2521,6 +2747,8 @@ x-bte-kgs-operations: semantic: Gene predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' bacs_umls-PART_OF-aapp_ncbigene-rev: @@ -2543,6 +2771,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PART_OF-cell: @@ -2565,6 +2795,8 @@ x-bte-kgs-operations: semantic: Cell predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PART_OF-cell-rev: @@ -2587,6 +2819,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-INTERACTS_WITH-cell: @@ -2609,6 +2843,8 @@ x-bte-kgs-operations: semantic: Cell predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-INTERACTS_WITH-cell-rev: @@ -2631,6 +2867,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-LOCATION_OF-cgab: @@ -2653,6 +2891,8 @@ x-bte-kgs-operations: semantic: Disease predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-STIMULATES-cell: @@ -2675,6 +2915,8 @@ x-bte-kgs-operations: semantic: Cell predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -2701,6 +2943,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -2727,6 +2971,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' plnt-LOCATION_OF-orch-rev: @@ -2749,6 +2995,8 @@ x-bte-kgs-operations: semantic: Plant predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celf-PROCESS_OF-neop: @@ -2771,6 +3019,8 @@ x-bte-kgs-operations: semantic: Disease predicate: occurs_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celf-PROCESS_OF-neop-rev: @@ -2793,6 +3043,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-INHIBITS-gngm: @@ -2815,6 +3067,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -2841,6 +3095,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -2867,6 +3123,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_input source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' medd-USES-phsu-rev: @@ -2889,6 +3147,8 @@ x-bte-kgs-operations: semantic: Device predicate: is_input_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' blor-LOCATION_OF-inpo: @@ -2911,6 +3171,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' blor-LOCATION_OF-inpo-rev: @@ -2933,6 +3195,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' neop-COEXISTS_WITH-neop: @@ -2955,6 +3219,8 @@ x-bte-kgs-operations: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' neop-COEXISTS_WITH-neop-rev: @@ -2977,6 +3243,8 @@ x-bte-kgs-operations: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell-LOCATION_OF-neop: @@ -2999,6 +3267,8 @@ x-bte-kgs-operations: semantic: Disease predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-LOCATION_OF-neop-rev: @@ -3021,6 +3291,8 @@ x-bte-kgs-operations: semantic: Cell predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-INTERACTS_WITH-bacs: @@ -3043,6 +3315,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-INTERACTS_WITH-bacs-rev: @@ -3065,6 +3339,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PART_OF-virs: @@ -3087,6 +3363,8 @@ x-bte-kgs-operations: semantic: Virus predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PART_OF-virs-rev: @@ -3109,6 +3387,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsf-PROCESS_OF-bpoc: @@ -3131,6 +3411,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: occurs_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsf-PROCESS_OF-bpoc-rev: @@ -3153,6 +3435,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-PART_OF-bpoc: @@ -3175,6 +3459,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-PART_OF-bpoc-rev: @@ -3197,6 +3483,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-CAUSES-celf: @@ -3219,6 +3507,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-CAUSES-celf-rev: @@ -3241,6 +3531,8 @@ x-bte-kgs-operations: semantic: Gene predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' diap-DIAGNOSES-fndg: @@ -3263,6 +3555,8 @@ x-bte-kgs-operations: semantic: DiseaseOrPhenotypicFeature predicate: diagnoses source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' diap-DIAGNOSES-fndg-rev: @@ -3285,6 +3579,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: is_diagnosed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bact-CAUSES-dsyn: @@ -3307,6 +3603,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bact-CAUSES-dsyn-rev: @@ -3329,6 +3627,8 @@ x-bte-kgs-operations: semantic: Bacterium predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celc-LOCATION_OF-moft: @@ -3351,6 +3651,8 @@ x-bte-kgs-operations: semantic: MolecularActivity predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-LOCATION_OF-moft-rev: @@ -3373,6 +3675,8 @@ x-bte-kgs-operations: semantic: CellularComponent predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' medd-USES-medd: @@ -3395,6 +3699,8 @@ x-bte-kgs-operations: semantic: Device predicate: has_input source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' medd-USES-medd-rev: @@ -3417,6 +3723,8 @@ x-bte-kgs-operations: semantic: Device predicate: is_input_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-TREATS-neop-rev: @@ -3437,8 +3745,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' antb-TREATS-dsyn-rev: @@ -3459,8 +3769,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celc-PART_OF-celc: @@ -3483,6 +3795,8 @@ x-bte-kgs-operations: semantic: CellularComponent predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-PART_OF-celc-rev: @@ -3505,6 +3819,8 @@ x-bte-kgs-operations: semantic: CellularComponent predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-AFFECTS-orgf: @@ -3527,6 +3843,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_umls-STIMULATES-gngm_ncbigene: @@ -3549,6 +3867,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: @@ -3575,6 +3895,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -3601,6 +3923,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' tisu-LOCATION_OF-orgf: @@ -3623,6 +3947,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' tisu-LOCATION_OF-orgf-rev: @@ -3645,6 +3971,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-PROCESS_OF-aggp: @@ -3667,6 +3995,8 @@ x-bte-kgs-operations: semantic: Cohort predicate: occurs_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-PROCESS_OF-aggp-rev: @@ -3689,6 +4019,8 @@ x-bte-kgs-operations: semantic: Disease predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-TREATS-inpo: @@ -3709,8 +4041,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PathologicalProcess - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' diap-DIAGNOSES-patf: @@ -3733,6 +4067,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: diagnoses source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' diap-DIAGNOSES-patf-rev: @@ -3755,6 +4091,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: is_diagnosed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' tisu-LOCATION_OF-neop-rev: @@ -3777,6 +4115,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-ASSOCIATED_WITH-dsyn: @@ -3799,6 +4139,8 @@ x-bte-kgs-operations: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-ASSOCIATED_WITH-dsyn-rev: @@ -3821,6 +4163,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bact-LOCATION_OF-aapp: @@ -3843,6 +4187,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bact-LOCATION_OF-aapp-rev: @@ -3865,6 +4211,8 @@ x-bte-kgs-operations: semantic: Bacterium predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-PREDISPOSES-dsyn: @@ -3885,8 +4233,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-PREDISPOSES-dsyn-rev: @@ -3907,8 +4257,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-CAUSES-celf: @@ -3931,6 +4283,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-CAUSES-celf-rev: @@ -3953,6 +4307,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' sosy-ASSOCIATED_WITH-dsyn: @@ -3975,6 +4331,8 @@ x-bte-kgs-operations: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' sosy-ASSOCIATED_WITH-dsyn-rev: @@ -3997,6 +4355,8 @@ x-bte-kgs-operations: semantic: PhenotypicFeature predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' tisu_umls-LOCATION_OF-aapp_ncbigene-rev: @@ -4019,6 +4379,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orgf-ASSOCIATED_WITH-dsyn: @@ -4041,6 +4403,8 @@ x-bte-kgs-operations: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orgf-ASSOCIATED_WITH-dsyn-rev: @@ -4063,6 +4427,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' tisu-LOCATION_OF-orch-rev: @@ -4085,6 +4451,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-STIMULATES-gngm: @@ -4107,6 +4475,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -4133,6 +4503,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -4159,6 +4531,8 @@ x-bte-kgs-operations: semantic: Bacterium predicate: occurs_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-PROCESS_OF-bact-rev: @@ -4181,6 +4555,8 @@ x-bte-kgs-operations: semantic: Disease predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-COEXISTS_WITH-gngm: @@ -4203,6 +4579,8 @@ x-bte-kgs-operations: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-COEXISTS_WITH-gngm-rev: @@ -4225,6 +4603,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell-LOCATION_OF-orch: @@ -4247,6 +4627,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-LOCATION_OF-orch-rev: @@ -4269,6 +4651,8 @@ x-bte-kgs-operations: semantic: Cell predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-TREATS-sosy: @@ -4289,8 +4673,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PhenotypicFeature - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-TREATS-sosy-rev: @@ -4311,8 +4697,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Procedure - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PART_OF-bact: @@ -4335,6 +4723,8 @@ x-bte-kgs-operations: semantic: Bacterium predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PART_OF-bact-rev: @@ -4357,6 +4747,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-COEXISTS_WITH-fndg: @@ -4379,6 +4771,8 @@ x-bte-kgs-operations: semantic: DiseaseOrPhenotypicFeature predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-COEXISTS_WITH-fndg-rev: @@ -4401,6 +4795,8 @@ x-bte-kgs-operations: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell-PART_OF-tisu: @@ -4423,6 +4819,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' horm-TREATS-dsyn-rev: @@ -4443,8 +4841,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-PRECEDES-diap: @@ -4467,6 +4867,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc_umls-LOCATION_OF-aapp_ncbigene: @@ -4489,6 +4891,8 @@ x-bte-kgs-operations: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' celc_umls-LOCATION_OF-aapp_ncbigene-rev: @@ -4511,6 +4915,8 @@ x-bte-kgs-operations: semantic: CellularComponent predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-STIMULATES-moft: @@ -4533,6 +4939,8 @@ x-bte-kgs-operations: semantic: MolecularActivity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -4559,6 +4967,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -4585,6 +4995,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PART_OF-blor-rev: @@ -4607,6 +5019,8 @@ x-bte-kgs-operations: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-AFFECTS-moft: @@ -4629,6 +5043,8 @@ x-bte-kgs-operations: semantic: MolecularActivity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AFFECTS-moft-rev: @@ -4651,6 +5067,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-CAUSES-dsyn: @@ -4673,6 +5091,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-CAUSES-dsyn-rev: @@ -4695,6 +5115,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-INTERACTS_WITH-aapp: @@ -4717,6 +5139,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-INTERACTS_WITH-aapp-rev: @@ -4739,6 +5163,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-CAUSES-patf: @@ -4761,6 +5187,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-CAUSES-patf-rev: @@ -4783,6 +5211,8 @@ x-bte-kgs-operations: semantic: Disease predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' diap-USES-medd-rev: @@ -4805,6 +5235,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: is_input_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-TREATS-mobd: @@ -4825,8 +5257,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bsoj-PART_OF-bpoc: @@ -4849,6 +5283,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bsoj-PART_OF-bpoc-rev: @@ -4871,6 +5307,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp_umls-USES-aapp_ncbigene: @@ -4893,6 +5331,8 @@ x-bte-kgs-operations: semantic: Gene predicate: has_input source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' topp_umls-USES-aapp_ncbigene-rev: @@ -4915,6 +5355,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: is_input_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell-INTERACTS_WITH-cell: @@ -4937,6 +5379,8 @@ x-bte-kgs-operations: semantic: Cell predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-INTERACTS_WITH-cell-rev: @@ -4959,6 +5403,8 @@ x-bte-kgs-operations: semantic: Cell predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' medd-TREATS-dsyn: @@ -4979,8 +5425,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' medd-TREATS-dsyn-rev: @@ -5001,8 +5449,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Device - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-ASSOCIATED_WITH-patf: @@ -5025,6 +5475,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-ASSOCIATED_WITH-patf-rev: @@ -5047,6 +5499,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-ASSOCIATED_WITH-neop_umls: @@ -5069,6 +5523,8 @@ x-bte-kgs-operations: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-ASSOCIATED_WITH-neop_umls-rev: @@ -5091,6 +5547,8 @@ x-bte-kgs-operations: semantic: Gene predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' bdsu-PART_OF-bpoc-rev: @@ -5113,6 +5571,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-CAUSES-orgf: @@ -5135,6 +5595,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-CAUSES-orgf-rev: @@ -5157,6 +5619,8 @@ x-bte-kgs-operations: semantic: Disease predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' moft-PROCESS_OF-tisu: @@ -5179,6 +5643,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: occurs_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' moft-PROCESS_OF-tisu-rev: @@ -5201,6 +5667,8 @@ x-bte-kgs-operations: semantic: MolecularActivity predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-PART_OF-virs: @@ -5223,6 +5691,8 @@ x-bte-kgs-operations: semantic: Virus predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-PART_OF-virs-rev: @@ -5245,6 +5715,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' tisu-LOCATION_OF-ortf: @@ -5267,6 +5739,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-PART_OF-bact: @@ -5289,6 +5763,8 @@ x-bte-kgs-operations: semantic: Bacterium predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-PART_OF-bact-rev: @@ -5311,6 +5787,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-ASSOCIATED_WITH-neop: @@ -5333,6 +5811,8 @@ x-bte-kgs-operations: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bsoj-LOCATION_OF-neop-rev: @@ -5355,6 +5835,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-PART_OF-cell: @@ -5377,6 +5859,8 @@ x-bte-kgs-operations: semantic: Cell predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-PART_OF-cell-rev: @@ -5399,6 +5883,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-CAUSES-dsyn: @@ -5421,6 +5907,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-CAUSES-dsyn-rev: @@ -5443,6 +5931,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-AUGMENTS-celf: @@ -5465,6 +5955,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -5491,6 +5983,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -5517,6 +6011,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' virs-CAUSES-dsyn-rev: @@ -5539,6 +6035,8 @@ x-bte-kgs-operations: semantic: Virus predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_umls-INTERACTS_WITH-aapp_ncbigene: @@ -5561,6 +6059,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' aapp_umls-INTERACTS_WITH-aapp_ncbigene-rev: @@ -5583,6 +6083,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-AFFECTS-ortf: @@ -5605,6 +6107,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-STIMULATES-gngm-rev: @@ -5627,6 +6131,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -5653,6 +6159,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-CAUSES-dsyn-rev: @@ -5675,6 +6183,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celc-LOCATION_OF-orch: @@ -5697,6 +6207,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-LOCATION_OF-orch-rev: @@ -5719,6 +6231,8 @@ x-bte-kgs-operations: semantic: CellularComponent predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs_ncbigene-PART_OF-aapp_umls: @@ -5741,6 +6255,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs_ncbigene-PART_OF-aapp_umls-rev: @@ -5763,6 +6279,8 @@ x-bte-kgs-operations: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' topp-CAUSES-dsyn: @@ -5785,6 +6303,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-CAUSES-dsyn-rev: @@ -5807,6 +6327,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-TREATS-mobd: @@ -5827,8 +6349,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-STIMULATES-gngm_umls: @@ -5851,6 +6375,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -5877,6 +6403,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -5903,6 +6431,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orgf-COEXISTS_WITH-orgf-rev: @@ -5925,6 +6455,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-INTERACTS_WITH-aapp_umls: @@ -5947,6 +6479,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-INTERACTS_WITH-aapp_umls-rev: @@ -5969,6 +6503,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' aapp_ncbigene-ASSOCIATED_WITH-neop_umls-rev: @@ -5991,6 +6527,8 @@ x-bte-kgs-operations: semantic: Gene predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' cell-INTERACTS_WITH-gngm: @@ -6013,6 +6551,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-INTERACTS_WITH-gngm-rev: @@ -6035,6 +6575,8 @@ x-bte-kgs-operations: semantic: Cell predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-PART_OF-celc_umls: @@ -6057,6 +6599,8 @@ x-bte-kgs-operations: semantic: CellularComponent predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-PART_OF-celc_umls-rev: @@ -6079,6 +6623,8 @@ x-bte-kgs-operations: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' topp-TREATS-anab: @@ -6098,9 +6644,11 @@ x-bte-kgs-operations: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease - predicate: treats + semantic: PhenotypicFeature + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' diap-USES-irda: @@ -6123,6 +6671,8 @@ x-bte-kgs-operations: semantic: DiagnosticAid predicate: has_input source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' diap-USES-irda-rev: @@ -6145,6 +6695,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: is_input_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-PRODUCES-aapp: @@ -6167,6 +6719,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PRODUCES-aapp-rev: @@ -6189,6 +6743,8 @@ x-bte-kgs-operations: semantic: Gene predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' tisu-PART_OF-tisu: @@ -6211,6 +6767,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' tisu-LOCATION_OF-inpo-rev: @@ -6233,6 +6791,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-USES-antb: @@ -6255,6 +6815,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_input source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-STIMULATES-gngm_umls-rev: @@ -6277,6 +6839,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -6301,8 +6865,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PhenotypicFeature - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-TREATS-sosy-rev: @@ -6323,8 +6889,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-INTERACTS_WITH-bacs: @@ -6347,6 +6915,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-INTERACTS_WITH-bacs-rev: @@ -6369,6 +6939,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-STIMULATES-bacs: @@ -6391,6 +6963,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -6417,6 +6991,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -6443,6 +7019,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fngs-LOCATION_OF-aapp-rev: @@ -6465,6 +7043,8 @@ x-bte-kgs-operations: semantic: Fungus predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-LOCATION_OF-bact: @@ -6487,6 +7067,8 @@ x-bte-kgs-operations: semantic: Bacterium predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-LOCATION_OF-bact-rev: @@ -6509,6 +7091,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-COEXISTS_WITH-bacs: @@ -6531,6 +7115,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-COEXISTS_WITH-bacs-rev: @@ -6553,6 +7139,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orga-ASSOCIATED_WITH-dsyn: @@ -6575,6 +7163,8 @@ x-bte-kgs-operations: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orga-ASSOCIATED_WITH-dsyn-rev: @@ -6597,6 +7187,8 @@ x-bte-kgs-operations: semantic: OrganismAttribute predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-CAUSES-celf-rev: @@ -6619,6 +7211,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-TREATS-patf: @@ -6639,8 +7233,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PathologicalProcess - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-TREATS-patf-rev: @@ -6661,8 +7257,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' mobd-COEXISTS_WITH-mobd: @@ -6685,6 +7283,8 @@ x-bte-kgs-operations: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' mobd-COEXISTS_WITH-mobd-rev: @@ -6707,6 +7307,8 @@ x-bte-kgs-operations: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-DISRUPTS-celf: @@ -6729,6 +7331,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-DISRUPTS-celf-rev: @@ -6751,6 +7355,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell_umls-PRODUCES-aapp_ncbigene: @@ -6773,6 +7379,8 @@ x-bte-kgs-operations: semantic: Gene predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' cell_umls-PRODUCES-aapp_ncbigene-rev: @@ -6795,6 +7403,8 @@ x-bte-kgs-operations: semantic: Cell predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-TREATS-sosy-rev: @@ -6815,8 +7425,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-COEXISTS_WITH-patf: @@ -6839,6 +7451,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-COEXISTS_WITH-patf-rev: @@ -6861,6 +7475,8 @@ x-bte-kgs-operations: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-LOCATION_OF-inch: @@ -6883,6 +7499,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-USES-lipd: @@ -6905,6 +7523,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_input source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-INTERACTS_WITH-aapp-rev: @@ -6927,6 +7547,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-INHIBITS-gngm-rev: @@ -6949,6 +7571,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -6975,6 +7599,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-AFFECTS-celf: @@ -6997,6 +7623,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-AFFECTS-celf-rev: @@ -7019,6 +7647,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' emst-LOCATION_OF-aapp-rev: @@ -7041,6 +7671,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-PART_OF-neop: @@ -7063,6 +7695,8 @@ x-bte-kgs-operations: semantic: Disease predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PART_OF-neop-rev: @@ -7085,6 +7719,8 @@ x-bte-kgs-operations: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-INTERACTS_WITH-aapp_umls-rev: @@ -7107,6 +7743,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' aapp-PART_OF-fngs: @@ -7129,6 +7767,8 @@ x-bte-kgs-operations: semantic: Fungus predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PART_OF-fngs-rev: @@ -7151,6 +7791,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-PREVENTS-dsyn: @@ -7171,8 +7813,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-PREVENTS-dsyn-rev: @@ -7193,8 +7837,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Procedure - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-PART_OF-virs_umls: @@ -7217,6 +7863,8 @@ x-bte-kgs-operations: semantic: Virus predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-PART_OF-virs_umls-rev: @@ -7239,6 +7887,8 @@ x-bte-kgs-operations: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' topp-USES-carb: @@ -7261,6 +7911,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_input source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-ASSOCIATED_WITH-dsyn: @@ -7283,6 +7935,8 @@ x-bte-kgs-operations: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-CAUSES-celf_umls: @@ -7305,6 +7959,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-CAUSES-celf_umls-rev: @@ -7327,6 +7983,8 @@ x-bte-kgs-operations: semantic: Gene predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' gngm_ncbigene-INTERACTS_WITH-cell_umls: @@ -7349,6 +8007,8 @@ x-bte-kgs-operations: semantic: Cell predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-INTERACTS_WITH-cell_umls-rev: @@ -7371,6 +8031,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' dsyn-OCCURS_IN-aggp: @@ -7393,6 +8055,8 @@ x-bte-kgs-operations: semantic: Cohort predicate: occurs_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-OCCURS_IN-aggp-rev: @@ -7415,6 +8079,8 @@ x-bte-kgs-operations: semantic: Disease predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-AFFECTS-celf: @@ -7437,6 +8103,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AFFECTS-celf-rev: @@ -7459,6 +8127,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-AFFECTS-celf_umls: @@ -7481,6 +8151,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-AFFECTS-celf_umls-rev: @@ -7503,6 +8175,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' aapp_umls-INTERACTS_WITH-gngm_ncbigene: @@ -7525,6 +8199,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' aapp_ncbigene-ASSOCIATED_WITH-dsyn_umls: @@ -7547,6 +8223,8 @@ x-bte-kgs-operations: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' blor-LOCATION_OF-blor: @@ -7569,6 +8247,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' blor-LOCATION_OF-blor-rev: @@ -7591,6 +8271,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-CAUSES-patf: @@ -7613,6 +8295,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-CAUSES-patf-rev: @@ -7635,6 +8319,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' diap-USES-phsu-rev: @@ -7657,6 +8343,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: is_input_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-PART_OF-tisu: @@ -7679,6 +8367,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-LOCATION_OF-elii: @@ -7701,6 +8391,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AFFECTS-bpoc: @@ -7723,6 +8415,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AFFECTS-bpoc-rev: @@ -7745,6 +8439,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bdsu-LOCATION_OF-inch: @@ -7767,6 +8463,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' diap-USES-elii: @@ -7789,6 +8487,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_input source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-COEXISTS_WITH-bacs: @@ -7811,6 +8511,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-COEXISTS_WITH-bacs-rev: @@ -7833,6 +8535,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-LOCATION_OF-bdsu: @@ -7855,6 +8559,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-LOCATION_OF-bdsu-rev: @@ -7877,6 +8583,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-AFFECTS-patf: @@ -7899,6 +8607,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AFFECTS-patf-rev: @@ -7921,6 +8631,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-COEXISTS_WITH-inch: @@ -7943,6 +8655,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-COEXISTS_WITH-inch-rev: @@ -7965,6 +8679,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-PRECEDES-dsyn: @@ -7987,6 +8703,8 @@ x-bte-kgs-operations: semantic: Disease predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-PRECEDES-dsyn-rev: @@ -8009,6 +8727,8 @@ x-bte-kgs-operations: semantic: Disease predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-COEXISTS_WITH-orch: @@ -8031,6 +8751,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-LOCATION_OF-elii: @@ -8053,6 +8775,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-AFFECTS-celf_umls-rev: @@ -8075,6 +8799,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' dora-TREATS-dsyn: @@ -8095,8 +8821,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dora-TREATS-dsyn-rev: @@ -8117,8 +8845,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Activity - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celc-PART_OF-bact: @@ -8141,6 +8871,8 @@ x-bte-kgs-operations: semantic: Bacterium predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-PART_OF-bact-rev: @@ -8163,6 +8895,8 @@ x-bte-kgs-operations: semantic: CellularComponent predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-PROCESS_OF-plnt: @@ -8185,6 +8919,8 @@ x-bte-kgs-operations: semantic: Plant predicate: occurs_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-PROCESS_OF-plnt-rev: @@ -8207,6 +8943,8 @@ x-bte-kgs-operations: semantic: Disease predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celf-AFFECTS-celf: @@ -8229,6 +8967,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celf-AFFECTS-celf-rev: @@ -8251,6 +8991,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bsoj-LOCATION_OF-fndg-rev: @@ -8273,6 +9015,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-INTERACTS_WITH-orch: @@ -8295,6 +9039,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-INTERACTS_WITH-orch-rev: @@ -8317,6 +9063,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-AFFECTS-orgf: @@ -8339,6 +9087,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-AFFECTS-dsyn: @@ -8361,6 +9111,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-AFFECTS-dsyn-rev: @@ -8383,6 +9135,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-TREATS-cgab: @@ -8403,8 +9157,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' tisu-PART_OF-plnt: @@ -8427,6 +9183,8 @@ x-bte-kgs-operations: semantic: Plant predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' tisu-PART_OF-plnt-rev: @@ -8449,6 +9207,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-AUGMENTS-ortf: @@ -8471,6 +9231,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -8497,6 +9259,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -8523,6 +9287,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -8547,8 +9313,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PREDISPOSES-dsyn-rev: @@ -8569,8 +9337,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Polypeptide - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-PART_OF-bpoc: @@ -8593,6 +9363,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PART_OF-bpoc-rev: @@ -8615,6 +9387,8 @@ x-bte-kgs-operations: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-PART_OF-celc_umls-rev: @@ -8637,6 +9411,8 @@ x-bte-kgs-operations: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' patf-COEXISTS_WITH-fndg: @@ -8659,6 +9435,8 @@ x-bte-kgs-operations: semantic: DiseaseOrPhenotypicFeature predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-COEXISTS_WITH-fndg-rev: @@ -8681,6 +9459,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-AFFECTS-fndg: @@ -8703,6 +9483,8 @@ x-bte-kgs-operations: semantic: DiseaseOrPhenotypicFeature predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AFFECTS-fndg-rev: @@ -8725,6 +9507,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_umls-COEXISTS_WITH-gngm_ncbigene: @@ -8747,6 +9531,8 @@ x-bte-kgs-operations: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' aapp_umls-COEXISTS_WITH-gngm_ncbigene-rev: @@ -8769,6 +9555,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-STIMULATES-gngm-rev: @@ -8791,6 +9579,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -8817,6 +9607,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-STIMULATES-cell_umls: @@ -8839,6 +9631,8 @@ x-bte-kgs-operations: semantic: Cell predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -8865,6 +9659,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -8891,6 +9687,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-TREATS-patf-rev: @@ -8911,8 +9709,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-INHIBITS-gngm-rev: @@ -8935,6 +9735,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -8961,6 +9763,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: @@ -8987,6 +9791,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -9013,6 +9819,8 @@ x-bte-kgs-operations: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-LOCATION_OF-carb: @@ -9035,6 +9843,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' plnt-LOCATION_OF-elii: @@ -9057,6 +9867,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-ASSOCIATED_WITH-gngm: @@ -9079,6 +9891,8 @@ x-bte-kgs-operations: semantic: Gene predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-ASSOCIATED_WITH-gngm-rev: @@ -9101,6 +9915,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-CAUSES-inpo: @@ -9123,6 +9939,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-CAUSES-inpo-rev: @@ -9145,6 +9963,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-PART_OF-blor_umls: @@ -9167,6 +9987,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-PART_OF-blor_umls-rev: @@ -9189,6 +10011,8 @@ x-bte-kgs-operations: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' cell-LOCATION_OF-virs: @@ -9211,6 +10035,8 @@ x-bte-kgs-operations: semantic: Virus predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-LOCATION_OF-virs-rev: @@ -9233,6 +10059,8 @@ x-bte-kgs-operations: semantic: Cell predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nsba-PART_OF-bpoc-rev: @@ -9255,6 +10083,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-DISRUPTS-celf: @@ -9277,6 +10107,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-DISRUPTS-celf-rev: @@ -9299,6 +10131,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-CAUSES-sosy: @@ -9321,6 +10155,8 @@ x-bte-kgs-operations: semantic: PhenotypicFeature predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-CAUSES-sosy-rev: @@ -9343,6 +10179,8 @@ x-bte-kgs-operations: semantic: Disease predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' plnt-LOCATION_OF-lipd: @@ -9365,6 +10203,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bact-PRODUCES-aapp: @@ -9387,6 +10227,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bact-PRODUCES-aapp-rev: @@ -9409,6 +10251,8 @@ x-bte-kgs-operations: semantic: Bacterium predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-STIMULATES-moft_umls: @@ -9431,6 +10275,8 @@ x-bte-kgs-operations: semantic: MolecularActivity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -9457,6 +10303,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -9483,6 +10331,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-DISRUPTS-orgf: @@ -9505,6 +10355,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-TREATS-acab: @@ -9525,8 +10377,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-PART_OF-bpoc_umls: @@ -9549,6 +10403,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-PART_OF-bpoc_umls-rev: @@ -9571,6 +10427,8 @@ x-bte-kgs-operations: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' celf-COEXISTS_WITH-celf: @@ -9593,6 +10451,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celf-COEXISTS_WITH-celf-rev: @@ -9615,6 +10475,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-STIMULATES-gngm_ncbigene: @@ -9637,6 +10499,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: @@ -9663,6 +10527,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -9689,6 +10555,8 @@ x-bte-kgs-operations: semantic: Cell predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bdsu-PART_OF-cell-rev: @@ -9711,6 +10579,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-CAUSES-patf: @@ -9733,6 +10603,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-STIMULATES-aapp: @@ -9755,6 +10627,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -9781,6 +10655,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -9807,6 +10683,8 @@ x-bte-kgs-operations: semantic: Disease predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-CAUSES-sosy: @@ -9829,6 +10707,8 @@ x-bte-kgs-operations: semantic: PhenotypicFeature predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-CAUSES-sosy-rev: @@ -9851,6 +10731,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-CAUSES-patf: @@ -9873,6 +10755,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-CAUSES-patf-rev: @@ -9895,6 +10779,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bact-ASSOCIATED_WITH-dsyn: @@ -9917,6 +10803,8 @@ x-bte-kgs-operations: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bact-ASSOCIATED_WITH-dsyn-rev: @@ -9939,6 +10827,8 @@ x-bte-kgs-operations: semantic: Bacterium predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' diap-DIAGNOSES-anab: @@ -9958,11 +10848,37 @@ x-bte-kgs-operations: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: diagnoses source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' + diap-DIAGNOSES-anab-rev: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: object.umls + parameters: + fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:DIAGNOSES AND subject.semantic_type_abbreviation:diap AND + _exists_:subject.umls AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Procedure + predicate: is_diagnosed_by + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-LOCATION_OF-strd: - supportBatch: True useTemplating: True @@ -9983,6 +10899,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-PART_OF-virs: @@ -10005,6 +10923,8 @@ x-bte-kgs-operations: semantic: Virus predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-PART_OF-virs-rev: @@ -10027,6 +10947,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell-PRODUCES-bacs: @@ -10049,6 +10971,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-PRODUCES-bacs-rev: @@ -10071,6 +10995,8 @@ x-bte-kgs-operations: semantic: Cell predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-PART_OF-virs_umls-rev: @@ -10093,6 +11019,8 @@ x-bte-kgs-operations: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' aapp-INTERACTS_WITH-gngm: @@ -10115,6 +11043,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-INTERACTS_WITH-gngm-rev: @@ -10137,6 +11067,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-INTERACTS_WITH-aapp: @@ -10159,6 +11091,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-INTERACTS_WITH-aapp-rev: @@ -10181,6 +11115,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_umls-INHIBITS-aapp_ncbigene: @@ -10203,6 +11139,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: @@ -10229,6 +11167,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -10255,6 +11195,8 @@ x-bte-kgs-operations: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' aapp-DISRUPTS-orgf: @@ -10277,6 +11219,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bact-LOCATION_OF-bacs: @@ -10299,6 +11243,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bact-LOCATION_OF-bacs-rev: @@ -10321,6 +11267,8 @@ x-bte-kgs-operations: semantic: Bacterium predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsf-PROCESS_OF-plnt: @@ -10343,6 +11291,8 @@ x-bte-kgs-operations: semantic: Plant predicate: occurs_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsf-PROCESS_OF-plnt-rev: @@ -10365,6 +11315,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell-AFFECTS-orgf: @@ -10387,6 +11339,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-AFFECTS-orgf-rev: @@ -10409,6 +11363,8 @@ x-bte-kgs-operations: semantic: Cell predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-AFFECTS-orgf: @@ -10431,6 +11387,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-AFFECTS-orgf-rev: @@ -10453,6 +11411,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-INHIBITS-bacs: @@ -10475,6 +11435,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -10501,6 +11463,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -10527,6 +11491,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AFFECTS-dsyn-rev: @@ -10549,6 +11515,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celc-LOCATION_OF-elii: @@ -10571,6 +11539,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-LOCATION_OF-biof: @@ -10593,6 +11563,8 @@ x-bte-kgs-operations: semantic: Phenomenon predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-LOCATION_OF-biof-rev: @@ -10615,6 +11587,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-AUGMENTS-orgf: @@ -10637,6 +11611,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -10663,6 +11639,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celf-CAUSES-celf-rev: @@ -10685,6 +11663,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' elii-COEXISTS_WITH-inch-rev: @@ -10707,6 +11687,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' diap-DIAGNOSES-inpo: @@ -10729,6 +11711,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: diagnoses source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fndg-COEXISTS_WITH-patf: @@ -10751,6 +11735,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fndg-COEXISTS_WITH-patf-rev: @@ -10773,6 +11759,8 @@ x-bte-kgs-operations: semantic: DiseaseOrPhenotypicFeature predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bsoj-LOCATION_OF-inpo-rev: @@ -10795,6 +11783,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-DISRUPTS-moft: @@ -10817,6 +11807,8 @@ x-bte-kgs-operations: semantic: MolecularActivity predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-DISRUPTS-moft-rev: @@ -10839,6 +11831,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' patf-COEXISTS_WITH-patf: @@ -10861,6 +11855,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-COEXISTS_WITH-patf-rev: @@ -10883,6 +11879,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-COEXISTS_WITH-aapp: @@ -10905,6 +11903,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-COEXISTS_WITH-aapp-rev: @@ -10927,6 +11927,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' neop-AFFECTS-bpoc: @@ -10949,6 +11951,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' neop-AFFECTS-bpoc-rev: @@ -10971,6 +11975,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-PRECEDES-acab: @@ -10993,6 +11999,8 @@ x-bte-kgs-operations: semantic: Disease predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-PRECEDES-acab-rev: @@ -11015,6 +12023,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-CAUSES-dsyn-rev: @@ -11037,6 +12047,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' comd-COEXISTS_WITH-neop-rev: @@ -11059,6 +12071,8 @@ x-bte-kgs-operations: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celc-LOCATION_OF-bact: @@ -11081,6 +12095,8 @@ x-bte-kgs-operations: semantic: Bacterium predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-LOCATION_OF-bact-rev: @@ -11103,6 +12119,8 @@ x-bte-kgs-operations: semantic: CellularComponent predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' fndg-PREDISPOSES-dsyn: @@ -11123,8 +12141,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fndg-PREDISPOSES-dsyn-rev: @@ -11145,8 +12165,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' neop-PROCESS_OF-emod: @@ -11169,6 +12191,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: occurs_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' neop-PROCESS_OF-emod-rev: @@ -11191,6 +12215,8 @@ x-bte-kgs-operations: semantic: Disease predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-AUGMENTS-bpoc: @@ -11213,6 +12239,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -11239,6 +12267,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -11265,6 +12295,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-ASSOCIATED_WITH-patf-rev: @@ -11287,6 +12319,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-INHIBITS-aapp_umls: @@ -11309,6 +12343,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -11335,6 +12371,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -11361,6 +12399,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs_umls-STIMULATES-gngm_ncbigene: @@ -11383,6 +12423,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: @@ -11409,6 +12451,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -11435,6 +12479,8 @@ x-bte-kgs-operations: semantic: CellularComponent predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PART_OF-celc-rev: @@ -11457,6 +12503,8 @@ x-bte-kgs-operations: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-LOCATION_OF-bsoj: @@ -11479,6 +12527,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inpo-COEXISTS_WITH-dsyn-rev: @@ -11501,6 +12551,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celc-LOCATION_OF-lipd: @@ -11523,6 +12575,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-AFFECTS-fndg: @@ -11545,6 +12599,8 @@ x-bte-kgs-operations: semantic: DiseaseOrPhenotypicFeature predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-AFFECTS-fndg-rev: @@ -11567,6 +12623,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-CAUSES-patf-rev: @@ -11589,6 +12647,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' ortf-COEXISTS_WITH-orgf-rev: @@ -11611,6 +12671,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' tisu-LOCATION_OF-lipd: @@ -11633,6 +12695,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-LOCATION_OF-inch: @@ -11655,6 +12719,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-INHIBITS-gngm_umls: @@ -11677,6 +12743,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -11703,6 +12771,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -11729,6 +12799,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -11755,6 +12827,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -11781,6 +12855,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-ADMINISTERED_TO-cell: @@ -11803,6 +12879,8 @@ x-bte-kgs-operations: semantic: Cell predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-ADMINISTERED_TO-cell-rev: @@ -11825,6 +12903,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-DISRUPTS-moft: @@ -11847,6 +12927,8 @@ x-bte-kgs-operations: semantic: MolecularActivity predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-DISRUPTS-moft-rev: @@ -11869,6 +12951,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-INTERACTS_WITH-orch-rev: @@ -11891,6 +12975,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' emst-PART_OF-emst: @@ -11913,6 +12999,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' emst-PART_OF-emst-rev: @@ -11935,6 +13023,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-AFFECTS-patf: @@ -11957,6 +13047,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-AFFECTS-patf-rev: @@ -11979,6 +13071,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' fngs-CAUSES-dsyn: @@ -12001,6 +13095,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fngs-CAUSES-dsyn-rev: @@ -12023,6 +13119,8 @@ x-bte-kgs-operations: semantic: Fungus predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' fndg-PROCESS_OF-aggp: @@ -12045,6 +13143,8 @@ x-bte-kgs-operations: semantic: Cohort predicate: occurs_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fndg-PROCESS_OF-aggp-rev: @@ -12067,6 +13167,8 @@ x-bte-kgs-operations: semantic: DiseaseOrPhenotypicFeature predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bsoj-LOCATION_OF-diap-rev: @@ -12089,6 +13191,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celc-PART_OF-fngs: @@ -12111,6 +13215,8 @@ x-bte-kgs-operations: semantic: Fungus predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-PART_OF-fngs-rev: @@ -12133,6 +13239,8 @@ x-bte-kgs-operations: semantic: CellularComponent predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-STIMULATES-bacs: @@ -12155,6 +13263,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -12181,6 +13291,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -12207,6 +13319,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -12233,6 +13347,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -12259,6 +13375,8 @@ x-bte-kgs-operations: semantic: Virus predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PART_OF-virs-rev: @@ -12281,6 +13399,8 @@ x-bte-kgs-operations: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-INHIBITS-bacs: @@ -12303,6 +13423,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -12329,6 +13451,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -12353,8 +13477,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-PREVENTS-dsyn-rev: @@ -12375,8 +13501,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-CAUSES-neop: @@ -12399,6 +13527,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' hops-CAUSES-neop-rev: @@ -12421,6 +13551,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inpo-CAUSES-dsyn-rev: @@ -12443,6 +13575,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-INTERACTS_WITH-aapp_ncbigene: @@ -12465,6 +13599,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' aapp_ncbigene-INTERACTS_WITH-aapp_ncbigene-rev: @@ -12487,6 +13623,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' tisu-LOCATION_OF-carb: @@ -12509,6 +13647,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PRODUCES-bacs: @@ -12531,6 +13671,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PRODUCES-bacs-rev: @@ -12553,6 +13695,8 @@ x-bte-kgs-operations: semantic: Gene predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell-LOCATION_OF-gngm: @@ -12575,6 +13719,8 @@ x-bte-kgs-operations: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-LOCATION_OF-gngm-rev: @@ -12597,6 +13743,8 @@ x-bte-kgs-operations: semantic: Cell predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celf-PROCESS_OF-bact: @@ -12619,6 +13767,8 @@ x-bte-kgs-operations: semantic: Bacterium predicate: occurs_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celf-PROCESS_OF-bact-rev: @@ -12641,6 +13791,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bact-LOCATION_OF-orch: @@ -12663,6 +13815,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-PART_OF-bact_umls: @@ -12685,6 +13839,8 @@ x-bte-kgs-operations: semantic: Bacterium predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-PART_OF-bact_umls-rev: @@ -12707,6 +13863,8 @@ x-bte-kgs-operations: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' orch-AUGMENTS-cell: @@ -12729,6 +13887,8 @@ x-bte-kgs-operations: semantic: Cell predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -12755,6 +13915,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -12781,6 +13943,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-ASSOCIATED_WITH-mobd: @@ -12803,6 +13967,8 @@ x-bte-kgs-operations: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-USES-food: @@ -12825,6 +13991,8 @@ x-bte-kgs-operations: semantic: Food predicate: has_input source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-USES-food-rev: @@ -12847,6 +14015,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: is_input_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orgf-AFFECTS-orgf: @@ -12869,6 +14039,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orgf-AFFECTS-orgf-rev: @@ -12891,6 +14063,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-AFFECTS-orgf: @@ -12913,6 +14087,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-AFFECTS-orgf-rev: @@ -12935,6 +14111,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' food-CAUSES-dsyn: @@ -12957,6 +14135,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' food-CAUSES-dsyn-rev: @@ -12979,6 +14159,8 @@ x-bte-kgs-operations: semantic: Food predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' neop-CAUSES-dsyn-rev: @@ -13001,6 +14183,8 @@ x-bte-kgs-operations: semantic: Disease predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PREDISPOSES-patf: @@ -13021,8 +14205,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PathologicalProcess - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PREDISPOSES-patf-rev: @@ -13043,8 +14229,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Polypeptide - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-PART_OF-cell_umls: @@ -13067,6 +14255,8 @@ x-bte-kgs-operations: semantic: Cell predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-PART_OF-cell_umls-rev: @@ -13089,6 +14279,8 @@ x-bte-kgs-operations: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' orch-COEXISTS_WITH-phsu: @@ -13111,6 +14303,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PART_OF-bact: @@ -13133,6 +14327,8 @@ x-bte-kgs-operations: semantic: Bacterium predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PART_OF-bact-rev: @@ -13155,6 +14351,8 @@ x-bte-kgs-operations: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' plnt-LOCATION_OF-inch: @@ -13177,6 +14375,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-PREDISPOSES-patf: @@ -13197,8 +14397,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PathologicalProcess - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-PREDISPOSES-patf-rev: @@ -13219,8 +14421,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-LOCATION_OF-virs: @@ -13243,6 +14447,8 @@ x-bte-kgs-operations: semantic: Virus predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-LOCATION_OF-virs-rev: @@ -13265,6 +14471,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-PREVENTS-patf: @@ -13285,8 +14493,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PathologicalProcess - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-PREVENTS-patf-rev: @@ -13307,8 +14517,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Procedure - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-INHIBITS-fndg: @@ -13331,6 +14543,8 @@ x-bte-kgs-operations: semantic: DiseaseOrPhenotypicFeature predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -13357,6 +14571,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -13383,6 +14599,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -13409,6 +14627,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -13435,6 +14655,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -13461,6 +14683,8 @@ x-bte-kgs-operations: semantic: Cell predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-PART_OF-cell-rev: @@ -13483,6 +14707,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' sosy-COEXISTS_WITH-fndg: @@ -13505,6 +14731,8 @@ x-bte-kgs-operations: semantic: DiseaseOrPhenotypicFeature predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' sosy-COEXISTS_WITH-fndg-rev: @@ -13527,6 +14755,8 @@ x-bte-kgs-operations: semantic: PhenotypicFeature predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-PRECEDES-patf: @@ -13549,6 +14779,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-PRECEDES-patf-rev: @@ -13571,6 +14803,8 @@ x-bte-kgs-operations: semantic: Disease predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-AUGMENTS-bpoc: @@ -13593,6 +14827,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -13619,6 +14855,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -13645,6 +14883,8 @@ x-bte-kgs-operations: semantic: Cell predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PART_OF-cell-rev: @@ -13667,6 +14907,8 @@ x-bte-kgs-operations: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-ADMINISTERED_TO-cell: @@ -13689,6 +14931,8 @@ x-bte-kgs-operations: semantic: Cell predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-ADMINISTERED_TO-cell-rev: @@ -13711,6 +14955,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' moft-AFFECTS-gngm: @@ -13733,6 +14979,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' moft-AFFECTS-gngm-rev: @@ -13755,6 +15003,8 @@ x-bte-kgs-operations: semantic: MolecularActivity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bdsu-PART_OF-bdsu: @@ -13777,6 +15027,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bdsu-PART_OF-bdsu-rev: @@ -13799,6 +15051,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bsoj-LOCATION_OF-anab: @@ -13818,11 +15072,37 @@ x-bte-kgs-operations: _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' + bsoj-LOCATION_OF-anab-rev: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: object.umls + parameters: + fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bsoj AND + _exists_:subject.umls AND pmid_count:>3 + outputs: + - id: UMLS + semantic: AnatomicalEntity + predicate: located_in + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' inch-COEXISTS_WITH-inch-rev: - supportBatch: True useTemplating: True @@ -13843,6 +15123,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-INTERACTS_WITH-aapp-rev: @@ -13865,6 +15147,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-AFFECTS-ortf: @@ -13887,6 +15171,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' horm-ASSOCIATED_WITH-dsyn-rev: @@ -13909,6 +15195,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-PREDISPOSES-neop: @@ -13929,8 +15217,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-AFFECTS-ortf: @@ -13953,6 +15243,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-INTERACTS_WITH-horm: @@ -13975,6 +15267,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-INTERACTS_WITH-aapp-rev: @@ -13997,6 +15291,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_umls-STIMULATES-gngm_ncbigene: @@ -14019,6 +15315,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: @@ -14045,6 +15343,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -14071,6 +15371,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inpo-COEXISTS_WITH-inpo-rev: @@ -14093,6 +15395,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-PREVENTS-sosy: @@ -14113,8 +15417,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PhenotypicFeature - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-PREVENTS-sosy-rev: @@ -14135,8 +15441,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-INTERACTS_WITH-phsu: @@ -14159,6 +15467,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-PREVENTS-dsyn-rev: @@ -14179,8 +15489,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' medd-TREATS-inpo: @@ -14201,8 +15513,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PathologicalProcess - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' medd-TREATS-inpo-rev: @@ -14223,8 +15537,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Device - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-INHIBITS-gngm: @@ -14247,6 +15563,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -14273,6 +15591,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -14299,6 +15619,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -14325,6 +15647,8 @@ x-bte-kgs-operations: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' plnt_umls-LOCATION_OF-aapp_ncbigene-rev: @@ -14347,6 +15671,8 @@ x-bte-kgs-operations: semantic: Plant predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_umls-INHIBITS-gngm_ncbigene: @@ -14369,6 +15695,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: @@ -14395,6 +15723,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' neop-AFFECTS-neop-rev: @@ -14417,6 +15747,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-AFFECTS-moft: @@ -14439,6 +15771,8 @@ x-bte-kgs-operations: semantic: MolecularActivity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-AFFECTS-moft-rev: @@ -14461,6 +15795,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' moft-COEXISTS_WITH-dsyn: @@ -14483,6 +15819,8 @@ x-bte-kgs-operations: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' moft-COEXISTS_WITH-dsyn-rev: @@ -14505,6 +15843,8 @@ x-bte-kgs-operations: semantic: MolecularActivity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-INTERACTS_WITH-phsu: @@ -14527,6 +15867,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AFFECTS-celc: @@ -14549,6 +15891,8 @@ x-bte-kgs-operations: semantic: CellularComponent predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AFFECTS-celc-rev: @@ -14571,6 +15915,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-AFFECTS-orgf_umls: @@ -14593,6 +15939,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' neop-PROCESS_OF-aggp-rev: @@ -14615,6 +15963,8 @@ x-bte-kgs-operations: semantic: Disease predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' patf-CAUSES-orgf: @@ -14637,6 +15987,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-CAUSES-orgf-rev: @@ -14659,6 +16011,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-AFFECTS-neop: @@ -14681,6 +16035,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-CAUSES-orgf: @@ -14703,6 +16059,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fndg-COEXISTS_WITH-sosy: @@ -14725,6 +16083,8 @@ x-bte-kgs-operations: semantic: PhenotypicFeature predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fndg-COEXISTS_WITH-sosy-rev: @@ -14747,6 +16107,8 @@ x-bte-kgs-operations: semantic: DiseaseOrPhenotypicFeature predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-PART_OF-fngs: @@ -14769,6 +16131,8 @@ x-bte-kgs-operations: semantic: Fungus predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-PART_OF-fngs-rev: @@ -14791,6 +16155,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-AFFECTS-dsyn: @@ -14813,6 +16179,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-AFFECTS-dsyn-rev: @@ -14835,6 +16203,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-LOCATION_OF-gngm: @@ -14857,6 +16227,8 @@ x-bte-kgs-operations: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-LOCATION_OF-gngm-rev: @@ -14879,6 +16251,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-ASSOCIATED_WITH-inpo: @@ -14901,6 +16275,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inpo-CAUSES-patf: @@ -14923,6 +16299,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inpo-CAUSES-patf-rev: @@ -14945,6 +16323,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-INHIBITS-bacs-rev: @@ -14967,6 +16347,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -14991,8 +16373,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PathologicalProcess - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' hops-STIMULATES-gngm-rev: @@ -15015,6 +16399,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -15041,6 +16427,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-PREVENTS-dsyn: @@ -15061,8 +16449,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-PREVENTS-dsyn-rev: @@ -15083,8 +16473,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: BiologicalEntity - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' virs-CAUSES-neop: @@ -15107,6 +16499,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' diap-DIAGNOSES-cgab: @@ -15129,6 +16523,8 @@ x-bte-kgs-operations: semantic: Disease predicate: diagnoses source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-AUGMENTS-celf: @@ -15151,6 +16547,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -15177,6 +16575,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' lipd-PART_OF-bact-rev: @@ -15199,6 +16599,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-STIMULATES-bacs-rev: @@ -15221,6 +16623,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -15245,8 +16649,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-PREDISPOSES-dsyn-rev: @@ -15267,8 +16673,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PathologicalProcess - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-PROCESS_OF-emod-rev: @@ -15291,6 +16699,8 @@ x-bte-kgs-operations: semantic: Disease predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-PREDISPOSES-fndg: @@ -15311,8 +16721,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-PREDISPOSES-fndg-rev: @@ -15333,8 +16745,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-INHIBITS-gngm: @@ -15357,6 +16771,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -15383,6 +16799,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -15409,6 +16827,8 @@ x-bte-kgs-operations: semantic: Disease predicate: diagnoses source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' medd-TREATS-patf: @@ -15429,8 +16849,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PathologicalProcess - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-AUGMENTS-moft: @@ -15453,6 +16875,8 @@ x-bte-kgs-operations: semantic: MolecularActivity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -15479,6 +16903,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -15505,6 +16931,8 @@ x-bte-kgs-operations: semantic: DiseaseOrPhenotypicFeature predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-AFFECTS-fndg-rev: @@ -15527,6 +16955,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-AFFECTS-moft_umls: @@ -15549,6 +16979,8 @@ x-bte-kgs-operations: semantic: MolecularActivity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-AFFECTS-moft_umls-rev: @@ -15571,6 +17003,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' bacs-DISRUPTS-celf-rev: @@ -15593,6 +17027,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell-LOCATION_OF-bsoj: @@ -15615,6 +17051,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-LOCATION_OF-bsoj-rev: @@ -15637,6 +17075,8 @@ x-bte-kgs-operations: semantic: Cell predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-INTERACTS_WITH-bacs_umls: @@ -15659,6 +17099,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-INTERACTS_WITH-bacs_umls-rev: @@ -15681,6 +17123,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' patf-AFFECTS-patf: @@ -15703,6 +17147,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-AFFECTS-patf-rev: @@ -15725,6 +17171,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell_umls-INTERACTS_WITH-gngm_ncbigene: @@ -15747,6 +17195,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' cell_umls-INTERACTS_WITH-gngm_ncbigene-rev: @@ -15769,6 +17219,8 @@ x-bte-kgs-operations: semantic: Cell predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsf-COEXISTS_WITH-orgf-rev: @@ -15791,6 +17243,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell-LOCATION_OF-strd: @@ -15813,6 +17267,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celf-AFFECTS-cell: @@ -15835,6 +17291,8 @@ x-bte-kgs-operations: semantic: Cell predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celf-AFFECTS-cell-rev: @@ -15857,6 +17315,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-ASSOCIATED_WITH-dsyn: @@ -15879,6 +17339,8 @@ x-bte-kgs-operations: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-ASSOCIATED_WITH-dsyn-rev: @@ -15901,6 +17363,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-STIMULATES-gngm-rev: @@ -15923,6 +17387,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -15949,6 +17415,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' neop-PRODUCES-aapp-rev: @@ -15971,6 +17439,8 @@ x-bte-kgs-operations: semantic: Disease predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-PREVENTS-sosy: @@ -15991,8 +17461,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PhenotypicFeature - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-PREVENTS-sosy-rev: @@ -16013,8 +17485,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Procedure - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-AUGMENTS-celf_umls: @@ -16037,6 +17511,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -16063,6 +17539,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -16089,6 +17567,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell_umls-LOCATION_OF-gngm_ncbigene: @@ -16111,6 +17591,8 @@ x-bte-kgs-operations: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' topp-AFFECTS-neop: @@ -16133,6 +17615,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-CAUSES-comd: @@ -16155,6 +17639,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-LOCATION_OF-carb: @@ -16177,6 +17663,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fngs-LOCATION_OF-orch: @@ -16199,6 +17687,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fngs-LOCATION_OF-orch-rev: @@ -16221,6 +17711,8 @@ x-bte-kgs-operations: semantic: Fungus predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-COEXISTS_WITH-gngm_umls: @@ -16243,6 +17735,8 @@ x-bte-kgs-operations: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-COEXISTS_WITH-gngm_umls-rev: @@ -16265,6 +17759,8 @@ x-bte-kgs-operations: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' orgf-COEXISTS_WITH-ortf: @@ -16287,6 +17783,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-AFFECTS-ortf: @@ -16309,6 +17807,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bact_umls-LOCATION_OF-aapp_ncbigene: @@ -16331,6 +17831,8 @@ x-bte-kgs-operations: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' bact_umls-LOCATION_OF-aapp_ncbigene-rev: @@ -16353,6 +17855,8 @@ x-bte-kgs-operations: semantic: Bacterium predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-AFFECTS-orgf-rev: @@ -16375,6 +17879,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-INTERACTS_WITH-bact: @@ -16397,6 +17903,8 @@ x-bte-kgs-operations: semantic: Bacterium predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-INTERACTS_WITH-bact-rev: @@ -16419,6 +17927,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-COEXISTS_WITH-phsu: @@ -16441,6 +17951,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-INTERACTS_WITH-cell: @@ -16463,6 +17975,8 @@ x-bte-kgs-operations: semantic: Cell predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-INTERACTS_WITH-cell-rev: @@ -16485,6 +17999,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-TREATS-virs: @@ -16505,8 +18021,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Virus - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-TREATS-virs-rev: @@ -16527,8 +18045,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-PART_OF-bact_umls-rev: @@ -16551,6 +18071,8 @@ x-bte-kgs-operations: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' hops-CAUSES-inpo-rev: @@ -16573,6 +18095,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-INTERACTS_WITH-aapp_ncbigene-rev: @@ -16595,6 +18119,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' orgf-PRECEDES-orgf: @@ -16617,6 +18143,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orgf-PRECEDES-orgf-rev: @@ -16639,6 +18167,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bdsu-ASSOCIATED_WITH-fndg: @@ -16661,6 +18191,8 @@ x-bte-kgs-operations: semantic: DiseaseOrPhenotypicFeature predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bdsu-ASSOCIATED_WITH-fndg-rev: @@ -16683,6 +18215,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-PART_OF-celc-rev: @@ -16705,6 +18239,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-AUGMENTS-celf: @@ -16727,6 +18263,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -16753,6 +18291,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -16779,6 +18319,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' gngm_ncbigene-PART_OF-cell_umls-rev: @@ -16801,6 +18343,8 @@ x-bte-kgs-operations: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' bpoc_umls-LOCATION_OF-gngm_ncbigene: @@ -16823,6 +18367,8 @@ x-bte-kgs-operations: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' gngm_ncbigene-INTERACTS_WITH-bacs_umls-rev: @@ -16845,6 +18391,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' orch-INHIBITS-orch: @@ -16867,6 +18415,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -16893,6 +18443,8 @@ x-bte-kgs-operations: semantic: Cohort predicate: occurs_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' sosy-PROCESS_OF-aggp-rev: @@ -16915,6 +18467,8 @@ x-bte-kgs-operations: semantic: PhenotypicFeature predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celc-LOCATION_OF-virs: @@ -16937,6 +18491,8 @@ x-bte-kgs-operations: semantic: Virus predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-LOCATION_OF-virs-rev: @@ -16959,6 +18515,8 @@ x-bte-kgs-operations: semantic: CellularComponent predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-AFFECTS-moft-rev: @@ -16981,6 +18539,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-ASSOCIATED_WITH-dsyn: @@ -17003,6 +18563,8 @@ x-bte-kgs-operations: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-ASSOCIATED_WITH-dsyn-rev: @@ -17025,6 +18587,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-INHIBITS-gngm_ncbigene: @@ -17047,6 +18611,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: @@ -17073,6 +18639,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -17099,6 +18667,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-COEXISTS_WITH-bacs-rev: @@ -17121,6 +18691,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-AFFECTS-tisu: @@ -17143,6 +18715,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PREDISPOSES-neop: @@ -17163,8 +18737,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-PREDISPOSES-dsyn: @@ -17185,8 +18761,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-PREDISPOSES-dsyn-rev: @@ -17207,8 +18785,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Procedure - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' fndg-PREDISPOSES-fndg: @@ -17229,8 +18809,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fndg-PREDISPOSES-fndg-rev: @@ -17251,8 +18833,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-PART_OF-virs: @@ -17275,6 +18859,8 @@ x-bte-kgs-operations: semantic: Virus predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-PART_OF-virs-rev: @@ -17297,6 +18883,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' patf-AFFECTS-dsyn: @@ -17319,6 +18907,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-AFFECTS-dsyn-rev: @@ -17341,6 +18931,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-COEXISTS_WITH-gngm: @@ -17363,6 +18955,8 @@ x-bte-kgs-operations: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-COEXISTS_WITH-gngm-rev: @@ -17385,6 +18979,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-CAUSES-mobd: @@ -17407,6 +19003,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-PART_OF-virs: @@ -17429,6 +19027,8 @@ x-bte-kgs-operations: semantic: Virus predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-PART_OF-virs-rev: @@ -17451,6 +19051,8 @@ x-bte-kgs-operations: semantic: CellularComponent predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celf-AFFECTS-patf: @@ -17473,6 +19075,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celf-AFFECTS-patf-rev: @@ -17495,6 +19099,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' sosy-COEXISTS_WITH-sosy: @@ -17517,6 +19123,8 @@ x-bte-kgs-operations: semantic: PhenotypicFeature predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' sosy-COEXISTS_WITH-sosy-rev: @@ -17539,6 +19147,8 @@ x-bte-kgs-operations: semantic: PhenotypicFeature predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-INTERACTS_WITH-nsba: @@ -17561,6 +19171,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AFFECTS-biof: @@ -17583,6 +19195,8 @@ x-bte-kgs-operations: semantic: Phenomenon predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AFFECTS-biof-rev: @@ -17605,6 +19219,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-PRODUCES-aapp: @@ -17627,6 +19243,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-PRODUCES-aapp-rev: @@ -17649,6 +19267,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celc-LOCATION_OF-bsoj: @@ -17671,6 +19291,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-LOCATION_OF-bsoj-rev: @@ -17693,6 +19315,8 @@ x-bte-kgs-operations: semantic: CellularComponent predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-AUGMENTS-moft-rev: @@ -17715,6 +19339,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -17741,6 +19367,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -17767,6 +19395,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bact-PRODUCES-bacs-rev: @@ -17789,6 +19419,8 @@ x-bte-kgs-operations: semantic: Bacterium predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orgf-AFFECTS-orga: @@ -17811,6 +19443,8 @@ x-bte-kgs-operations: semantic: OrganismAttribute predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orgf-AFFECTS-orga-rev: @@ -17833,6 +19467,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-PREVENTS-patf: @@ -17853,8 +19489,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PathologicalProcess - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-PREVENTS-patf-rev: @@ -17875,8 +19513,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-INTERACTS_WITH-carb: @@ -17899,6 +19539,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' emst_umls-LOCATION_OF-aapp_ncbigene-rev: @@ -17921,6 +19563,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-INTERACTS_WITH-horm: @@ -17943,6 +19587,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' horm-INTERACTS_WITH-horm-rev: @@ -17965,6 +19611,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-PART_OF-bpoc-rev: @@ -17987,6 +19635,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-PREDISPOSES-dsyn: @@ -18007,8 +19657,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-PREDISPOSES-dsyn-rev: @@ -18029,8 +19681,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celf-AFFECTS-bacs: @@ -18053,6 +19707,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celf-AFFECTS-bacs-rev: @@ -18075,6 +19731,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-CAUSES-patf-rev: @@ -18097,6 +19755,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-AFFECTS-bpoc: @@ -18119,6 +19779,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-AFFECTS-bpoc-rev: @@ -18141,6 +19803,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-INTERACTS_WITH-nnon: @@ -18163,6 +19827,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AFFECTS-orgf: @@ -18185,6 +19851,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bsoj-LOCATION_OF-celc: @@ -18207,6 +19875,8 @@ x-bte-kgs-operations: semantic: CellularComponent predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bsoj-LOCATION_OF-celc-rev: @@ -18229,6 +19899,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-AUGMENTS-celf_umls-rev: @@ -18251,6 +19923,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -18277,6 +19951,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-ASSOCIATED_WITH-neop-rev: @@ -18299,6 +19975,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-PREVENTS-inpo: @@ -18319,8 +19997,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PathologicalProcess - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fngs-LOCATION_OF-bacs: @@ -18343,6 +20023,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-LOCATION_OF-diap: @@ -18365,6 +20047,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-LOCATION_OF-diap-rev: @@ -18387,6 +20071,8 @@ x-bte-kgs-operations: semantic: Cell predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-ASSOCIATED_WITH-neop: @@ -18409,6 +20095,8 @@ x-bte-kgs-operations: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-AFFECTS-patf: @@ -18431,6 +20119,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-AFFECTS-patf-rev: @@ -18453,6 +20143,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-DISRUPTS-celf_umls: @@ -18475,6 +20167,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-DISRUPTS-celf_umls-rev: @@ -18497,6 +20191,8 @@ x-bte-kgs-operations: semantic: Gene predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' bacs-AFFECTS-cell: @@ -18519,6 +20215,8 @@ x-bte-kgs-operations: semantic: Cell predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-AFFECTS-cell-rev: @@ -18541,6 +20239,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-INTERACTS_WITH-imft: @@ -18563,6 +20263,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-INTERACTS_WITH-imft-rev: @@ -18585,6 +20287,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' diap-DIAGNOSES-mobd: @@ -18607,6 +20311,8 @@ x-bte-kgs-operations: semantic: Disease predicate: diagnoses source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' neop-CAUSES-neop: @@ -18629,6 +20335,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AUGMENTS-phsf: @@ -18651,6 +20359,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -18677,6 +20387,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' medd-TREATS-neop: @@ -18697,8 +20409,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-ASSOCIATED_WITH-neop: @@ -18721,6 +20435,8 @@ x-bte-kgs-operations: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-INTERACTS_WITH-lipd: @@ -18743,6 +20459,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-DISRUPTS-cell: @@ -18765,6 +20483,8 @@ x-bte-kgs-operations: semantic: Cell predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-DISRUPTS-cell-rev: @@ -18787,6 +20507,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' fndg-PREDISPOSES-neop: @@ -18807,8 +20529,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-DISRUPTS-celf: @@ -18831,6 +20555,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-DISRUPTS-celf-rev: @@ -18853,6 +20579,8 @@ x-bte-kgs-operations: semantic: Gene predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-PREVENTS-dsyn-rev: @@ -18873,8 +20601,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-INTERACTS_WITH-gngm: @@ -18897,6 +20627,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-INTERACTS_WITH-gngm-rev: @@ -18919,6 +20651,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' diap-DIAGNOSES-sosy: @@ -18941,30 +20675,10 @@ x-bte-kgs-operations: semantic: PhenotypicFeature predicate: diagnoses source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' - diap-DIAGNOSES-sosy-rev: - - supportBatch: True - useTemplating: True - inputs: - - id: UMLS - semantic: PhenotypicFeature - requestBody: - body: - q: '{{ queryInputs }}' - scopes: object.umls - parameters: - fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name - size: 1000 - filter: predicate:DIAGNOSES AND subject.semantic_type_abbreviation:diap AND - _exists_:subject.umls AND pmid_count:>3 - outputs: - - id: UMLS - semantic: Procedure - predicate: is_diagnosed_by - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' acab-COEXISTS_WITH-dsyn-rev: - supportBatch: True useTemplating: True @@ -18985,6 +20699,8 @@ x-bte-kgs-operations: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celf-AFFECTS-neop: @@ -19007,6 +20723,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celf-AFFECTS-neop-rev: @@ -19029,6 +20747,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-AFFECTS-dsyn: @@ -19051,6 +20771,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-AFFECTS-dsyn-rev: @@ -19073,6 +20795,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-CAUSES-comd: @@ -19095,6 +20819,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-LOCATION_OF-bact: @@ -19117,6 +20843,8 @@ x-bte-kgs-operations: semantic: Bacterium predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-LOCATION_OF-bact-rev: @@ -19139,6 +20867,8 @@ x-bte-kgs-operations: semantic: Cell predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PRODUCES-inch: @@ -19161,6 +20891,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PRODUCES-inch-rev: @@ -19183,6 +20915,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-AFFECTS-phsf: @@ -19205,6 +20939,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-COEXISTS_WITH-orch: @@ -19227,6 +20963,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' acab-PART_OF-neop: @@ -19249,6 +20987,8 @@ x-bte-kgs-operations: semantic: Disease predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' acab-PART_OF-neop-rev: @@ -19271,6 +21011,8 @@ x-bte-kgs-operations: semantic: Disease predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs_umls-INTERACTS_WITH-aapp_ncbigene: @@ -19293,6 +21035,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' bacs_umls-INTERACTS_WITH-aapp_ncbigene-rev: @@ -19315,6 +21059,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-COEXISTS_WITH-gngm_ncbigene: @@ -19337,6 +21083,8 @@ x-bte-kgs-operations: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' aapp_ncbigene-COEXISTS_WITH-gngm_ncbigene-rev: @@ -19359,6 +21107,8 @@ x-bte-kgs-operations: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' celc-PART_OF-neop: @@ -19381,6 +21131,8 @@ x-bte-kgs-operations: semantic: Disease predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-PART_OF-neop-rev: @@ -19403,6 +21155,8 @@ x-bte-kgs-operations: semantic: CellularComponent predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-USES-orch: @@ -19425,6 +21179,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_input source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nnon-INTERACTS_WITH-aapp-rev: @@ -19447,6 +21203,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-PRODUCES-aapp_umls: @@ -19469,6 +21227,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-PRODUCES-aapp_umls-rev: @@ -19491,6 +21251,8 @@ x-bte-kgs-operations: semantic: Gene predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' lipd-AUGMENTS-celf-rev: @@ -19513,6 +21275,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -19539,6 +21303,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' moft-CAUSES-celf-rev: @@ -19561,6 +21327,8 @@ x-bte-kgs-operations: semantic: MolecularActivity predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-CAUSES-dsyn-rev: @@ -19583,6 +21351,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-TREATS-dsyn: @@ -19603,8 +21373,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-TREATS-dsyn-rev: @@ -19625,8 +21397,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Polypeptide - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-AFFECTS-moft_umls-rev: @@ -19649,6 +21423,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' phsu-PREVENTS-patf-rev: @@ -19669,8 +21445,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-INHIBITS-ortf: @@ -19693,6 +21471,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -19719,6 +21499,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -19745,6 +21527,8 @@ x-bte-kgs-operations: semantic: CellularComponent predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-PART_OF-celc-rev: @@ -19767,6 +21551,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-DISRUPTS-celf_umls-rev: @@ -19789,6 +21575,8 @@ x-bte-kgs-operations: semantic: Gene predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' imft-PART_OF-bact: @@ -19811,6 +21599,8 @@ x-bte-kgs-operations: semantic: Bacterium predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-PART_OF-bact-rev: @@ -19833,6 +21623,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-INTERACTS_WITH-gngm_umls: @@ -19855,6 +21647,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-INTERACTS_WITH-gngm_umls-rev: @@ -19877,6 +21671,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' hops-INHIBITS-gngm-rev: @@ -19899,6 +21695,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -19925,6 +21723,8 @@ x-bte-kgs-operations: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' fngs_umls-LOCATION_OF-aapp_ncbigene-rev: @@ -19947,6 +21747,8 @@ x-bte-kgs-operations: semantic: Fungus predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orga-PREDISPOSES-dsyn: @@ -19967,8 +21769,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orga-PREDISPOSES-dsyn-rev: @@ -19989,8 +21793,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: OrganismAttribute - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bsoj-LOCATION_OF-acab: @@ -20013,6 +21819,8 @@ x-bte-kgs-operations: semantic: Disease predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-INTERACTS_WITH-bacs: @@ -20035,6 +21843,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-INTERACTS_WITH-bacs-rev: @@ -20057,6 +21867,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' tisu-LOCATION_OF-gngm-rev: @@ -20079,6 +21891,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-INHIBITS-ortf-rev: @@ -20101,6 +21915,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -20127,6 +21943,8 @@ x-bte-kgs-operations: semantic: Gene predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' bacs_ncbigene-PART_OF-aapp_ncbigene-rev: @@ -20149,6 +21967,8 @@ x-bte-kgs-operations: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' aapp-ASSOCIATED_WITH-sosy: @@ -20171,6 +21991,8 @@ x-bte-kgs-operations: semantic: PhenotypicFeature predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-ASSOCIATED_WITH-sosy-rev: @@ -20193,6 +22015,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-AFFECTS-bpoc-rev: @@ -20215,6 +22039,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-CAUSES-inpo-rev: @@ -20237,6 +22063,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-AFFECTS-moft: @@ -20259,6 +22087,8 @@ x-bte-kgs-operations: semantic: MolecularActivity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AFFECTS-moft-rev: @@ -20281,6 +22111,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nsba-PART_OF-celc-rev: @@ -20303,6 +22135,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' virs-COEXISTS_WITH-dsyn: @@ -20325,6 +22159,8 @@ x-bte-kgs-operations: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' virs-COEXISTS_WITH-dsyn-rev: @@ -20347,6 +22183,8 @@ x-bte-kgs-operations: semantic: Virus predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-LOCATION_OF-nsba: @@ -20369,6 +22207,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-COEXISTS_WITH-sosy: @@ -20391,6 +22231,8 @@ x-bte-kgs-operations: semantic: PhenotypicFeature predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-COEXISTS_WITH-sosy-rev: @@ -20413,6 +22255,8 @@ x-bte-kgs-operations: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' tisu-LOCATION_OF-bact-rev: @@ -20435,6 +22279,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd-ASSOCIATED_WITH-dsyn-rev: @@ -20457,6 +22303,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-PART_OF-fngs: @@ -20479,6 +22327,8 @@ x-bte-kgs-operations: semantic: Fungus predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PART_OF-fngs-rev: @@ -20501,6 +22351,8 @@ x-bte-kgs-operations: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-AUGMENTS-ortf: @@ -20523,6 +22375,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -20549,6 +22403,8 @@ x-bte-kgs-operations: semantic: CellularComponent predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-PART_OF-celc-rev: @@ -20571,6 +22427,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nnon-ADMINISTERED_TO-cell-rev: @@ -20593,6 +22451,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bsoj-LOCATION_OF-sosy: @@ -20615,30 +22475,10 @@ x-bte-kgs-operations: semantic: PhenotypicFeature predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' - bsoj-LOCATION_OF-sosy-rev: - - supportBatch: True - useTemplating: True - inputs: - - id: UMLS - semantic: PhenotypicFeature - requestBody: - body: - q: '{{ queryInputs }}' - scopes: object.umls - parameters: - fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name - size: 1000 - filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bsoj AND - _exists_:subject.umls AND pmid_count:>3 - outputs: - - id: UMLS - semantic: AnatomicalEntity - predicate: located_in - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-COEXISTS_WITH-aapp: - supportBatch: True useTemplating: True @@ -20659,6 +22499,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-COEXISTS_WITH-aapp-rev: @@ -20681,6 +22523,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bact-LOCATION_OF-carb: @@ -20703,6 +22547,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inch-CAUSES-comd-rev: @@ -20725,6 +22571,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' patf-AFFECTS-orgf: @@ -20747,6 +22595,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-AFFECTS-orgf-rev: @@ -20769,6 +22619,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' tisu-LOCATION_OF-virs-rev: @@ -20791,6 +22643,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' antb-CAUSES-inpo-rev: @@ -20813,6 +22667,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-STIMULATES-horm: @@ -20835,6 +22691,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -20861,6 +22719,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -20887,6 +22747,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' virs-LOCATION_OF-aapp: @@ -20909,6 +22771,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' virs-LOCATION_OF-aapp-rev: @@ -20931,6 +22795,8 @@ x-bte-kgs-operations: semantic: Virus predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orgf-ASSOCIATED_WITH-sosy: @@ -20953,6 +22819,8 @@ x-bte-kgs-operations: semantic: PhenotypicFeature predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orgf-ASSOCIATED_WITH-sosy-rev: @@ -20975,6 +22843,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' elii-AUGMENTS-celf-rev: @@ -20997,6 +22867,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -21023,6 +22895,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_umls-PRODUCES-aapp_ncbigene: @@ -21045,6 +22919,8 @@ x-bte-kgs-operations: semantic: Gene predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' gngm_umls-PRODUCES-aapp_ncbigene-rev: @@ -21067,6 +22943,8 @@ x-bte-kgs-operations: semantic: Gene predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PRODUCES-aapp: @@ -21089,6 +22967,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PRODUCES-aapp-rev: @@ -21111,6 +22991,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-COEXISTS_WITH-cgab: @@ -21133,6 +23015,8 @@ x-bte-kgs-operations: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' tisu-LOCATION_OF-bsoj-rev: @@ -21155,6 +23039,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-AFFECTS-orgf-rev: @@ -21177,6 +23063,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd_umls-STIMULATES-gngm_ncbigene-rev: @@ -21199,6 +23087,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -21225,6 +23115,8 @@ x-bte-kgs-operations: semantic: Fungus predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-PART_OF-fngs_umls-rev: @@ -21247,6 +23139,8 @@ x-bte-kgs-operations: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' horm_ncbigene-TREATS-dsyn_umls: @@ -21267,8 +23161,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' horm_ncbigene-TREATS-dsyn_umls-rev: @@ -21289,8 +23185,10 @@ x-bte-kgs-operations: outputs: - id: NCBIGene semantic: Gene - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' cgab-COEXISTS_WITH-dsyn-rev: @@ -21313,6 +23211,8 @@ x-bte-kgs-operations: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-COEXISTS_WITH-aapp-rev: @@ -21335,6 +23235,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-INHIBITS-aapp: @@ -21357,6 +23259,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -21383,6 +23287,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -21409,6 +23315,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inpo-PRECEDES-celf-rev: @@ -21431,6 +23339,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-CAUSES-dsyn_umls: @@ -21453,6 +23363,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-CAUSES-dsyn_umls-rev: @@ -21475,6 +23387,8 @@ x-bte-kgs-operations: semantic: Gene predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' plnt-LOCATION_OF-strd: @@ -21497,6 +23411,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' carb-AUGMENTS-celf-rev: @@ -21519,6 +23435,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -21545,6 +23463,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-PART_OF-neop_umls: @@ -21567,6 +23487,8 @@ x-bte-kgs-operations: semantic: Disease predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-PART_OF-neop_umls-rev: @@ -21589,6 +23511,8 @@ x-bte-kgs-operations: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' inpo-PROCESS_OF-aggp: @@ -21611,6 +23535,8 @@ x-bte-kgs-operations: semantic: Cohort predicate: occurs_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inpo-PROCESS_OF-aggp-rev: @@ -21633,6 +23559,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_umls-INHIBITS-gngm_ncbigene: @@ -21655,6 +23583,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: @@ -21681,6 +23611,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -21705,8 +23637,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PathologicalProcess - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-TREATS-virs: @@ -21727,8 +23661,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Virus - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-TREATS-virs-rev: @@ -21749,8 +23685,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Procedure - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-DISRUPTS-moft-rev: @@ -21773,6 +23711,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-COEXISTS_WITH-inpo: @@ -21795,6 +23735,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' tisu-PRODUCES-aapp-rev: @@ -21817,6 +23759,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_umls-INTERACTS_WITH-aapp_ncbigene: @@ -21839,6 +23783,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' gngm_umls-INTERACTS_WITH-aapp_ncbigene-rev: @@ -21861,6 +23807,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-TREATS-patf-rev: @@ -21881,8 +23829,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celf-AFFECTS-dsyn: @@ -21905,6 +23855,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-PROCESS_OF-aggp-rev: @@ -21927,6 +23879,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orgf-AFFECTS-patf-rev: @@ -21949,6 +23903,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nsba-INTERACTS_WITH-aapp-rev: @@ -21971,6 +23927,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-CAUSES-dsyn: @@ -21993,6 +23951,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-CAUSES-dsyn-rev: @@ -22015,6 +23975,8 @@ x-bte-kgs-operations: semantic: Gene predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-COEXISTS_WITH-lipd: @@ -22037,6 +23999,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bact-CAUSES-patf: @@ -22059,6 +24023,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bact-CAUSES-patf-rev: @@ -22081,6 +24047,8 @@ x-bte-kgs-operations: semantic: Bacterium predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-AFFECTS-patf: @@ -22103,6 +24071,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-AFFECTS-patf-rev: @@ -22125,6 +24095,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-PREVENTS-comd: @@ -22145,8 +24117,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-INHIBITS-aapp_ncbigene: @@ -22169,6 +24143,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: @@ -22195,6 +24171,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -22221,6 +24199,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -22247,6 +24227,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: @@ -22273,6 +24255,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' diap-PRECEDES-topp-rev: @@ -22295,6 +24279,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-ASSOCIATED_WITH-moft: @@ -22317,6 +24303,8 @@ x-bte-kgs-operations: semantic: MolecularActivity predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-ASSOCIATED_WITH-moft-rev: @@ -22339,6 +24327,8 @@ x-bte-kgs-operations: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-ASSOCIATED_WITH-dsyn-rev: @@ -22361,6 +24351,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' patf-AFFECTS-ortf: @@ -22383,6 +24375,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cgab-CAUSES-dsyn-rev: @@ -22405,6 +24399,8 @@ x-bte-kgs-operations: semantic: Disease predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-INTERACTS_WITH-gngm: @@ -22427,6 +24423,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-INTERACTS_WITH-gngm-rev: @@ -22449,6 +24447,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-AFFECTS-neop: @@ -22471,6 +24471,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-AFFECTS-neop-rev: @@ -22493,6 +24495,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PREVENTS-patf: @@ -22513,8 +24517,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PathologicalProcess - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PREVENTS-patf-rev: @@ -22535,8 +24541,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Polypeptide - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-DISRUPTS-phsf: @@ -22559,6 +24567,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-INHIBITS-nsba: @@ -22581,6 +24591,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -22607,6 +24619,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-COEXISTS_WITH-inch: @@ -22629,6 +24643,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inpo-CAUSES-sosy: @@ -22651,6 +24667,8 @@ x-bte-kgs-operations: semantic: PhenotypicFeature predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inpo-CAUSES-sosy-rev: @@ -22673,6 +24691,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' fndg-PREDISPOSES-patf: @@ -22693,8 +24713,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PathologicalProcess - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fndg-PREDISPOSES-patf-rev: @@ -22715,8 +24737,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celf-PRODUCES-bacs: @@ -22739,6 +24763,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celf-PRODUCES-bacs-rev: @@ -22761,6 +24787,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orgf-AFFECTS-ortf: @@ -22783,6 +24811,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-PREVENTS-neop: @@ -22803,8 +24833,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AFFECTS-cell: @@ -22827,6 +24859,8 @@ x-bte-kgs-operations: semantic: Cell predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AFFECTS-cell-rev: @@ -22849,6 +24883,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-STIMULATES-aapp: @@ -22871,6 +24907,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -22897,6 +24935,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -22921,8 +24961,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PREDISPOSES-neop-rev: @@ -22943,8 +24985,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Gene - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-INTERACTS_WITH-hops: @@ -22967,6 +25011,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' neop-OCCURS_IN-aggp-rev: @@ -22989,6 +25035,8 @@ x-bte-kgs-operations: semantic: Disease predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-COEXISTS_WITH-aapp_umls: @@ -23011,6 +25059,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-COEXISTS_WITH-aapp_umls-rev: @@ -23033,6 +25083,8 @@ x-bte-kgs-operations: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' comd-CAUSES-dsyn-rev: @@ -23055,6 +25107,8 @@ x-bte-kgs-operations: semantic: Disease predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-ASSOCIATED_WITH-patf_umls: @@ -23077,6 +25131,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-ASSOCIATED_WITH-patf_umls-rev: @@ -23099,6 +25155,8 @@ x-bte-kgs-operations: semantic: Gene predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' imft-STIMULATES-gngm: @@ -23121,6 +25179,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -23147,6 +25207,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -23173,6 +25235,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-INHIBITS-orch: @@ -23195,6 +25259,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -23221,6 +25287,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' food-AFFECTS-orgf-rev: @@ -23243,6 +25311,8 @@ x-bte-kgs-operations: semantic: Food predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-INTERACTS_WITH-inch: @@ -23265,6 +25335,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-AFFECTS-patf-rev: @@ -23287,6 +25359,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-COMPLICATES-dsyn: @@ -23307,8 +25381,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: exacerbates + predicate: exacerbates_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-COMPLICATES-dsyn-rev: @@ -23329,8 +25405,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: is_exacerbated_by + predicate: condition_exacerbated_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nnon-INTERACTS_WITH-bacs-rev: @@ -23353,6 +25431,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-CAUSES-dsyn_umls-rev: @@ -23375,6 +25455,8 @@ x-bte-kgs-operations: semantic: Gene predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' aapp_ncbigene-PART_OF-tisu_umls: @@ -23397,6 +25479,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-AUGMENTS-orgf-rev: @@ -23419,6 +25503,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -23445,6 +25531,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' horm_umls-STIMULATES-gngm_ncbigene-rev: @@ -23467,6 +25555,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -23493,6 +25583,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-ASSOCIATED_WITH-patf-rev: @@ -23515,6 +25607,8 @@ x-bte-kgs-operations: semantic: Gene predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs_umls-INTERACTS_WITH-gngm_ncbigene: @@ -23537,6 +25631,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' bacs-AUGMENTS-ortf-rev: @@ -23559,6 +25655,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -23585,6 +25683,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-INHIBITS-gngm-rev: @@ -23607,6 +25707,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -23633,6 +25735,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' moft-AFFECTS-orgf-rev: @@ -23655,6 +25759,8 @@ x-bte-kgs-operations: semantic: MolecularActivity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-ASSOCIATED_WITH-inpo: @@ -23677,6 +25783,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf_umls-ASSOCIATED_WITH-gngm_ncbigene: @@ -23699,6 +25807,8 @@ x-bte-kgs-operations: semantic: Gene predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' patf_umls-ASSOCIATED_WITH-gngm_ncbigene-rev: @@ -23721,6 +25831,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' ortf-AFFECTS-orgf-rev: @@ -23743,6 +25855,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inbe-PREDISPOSES-dsyn: @@ -23763,8 +25877,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inbe-PREDISPOSES-dsyn-rev: @@ -23785,8 +25901,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Behavior - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celc-LOCATION_OF-strd: @@ -23809,6 +25927,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-PART_OF-bact: @@ -23831,6 +25951,8 @@ x-bte-kgs-operations: semantic: Bacterium predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-PART_OF-bact-rev: @@ -23853,6 +25975,8 @@ x-bte-kgs-operations: semantic: Cell predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' sosy-COEXISTS_WITH-dsyn: @@ -23875,6 +25999,8 @@ x-bte-kgs-operations: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' sosy-COEXISTS_WITH-dsyn-rev: @@ -23897,6 +26023,8 @@ x-bte-kgs-operations: semantic: PhenotypicFeature predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-INTERACTS_WITH-aapp-rev: @@ -23919,6 +26047,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-COEXISTS_WITH-gngm_ncbigene-rev: @@ -23941,6 +26071,8 @@ x-bte-kgs-operations: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' lipd-STIMULATES-bacs-rev: @@ -23963,6 +26095,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -23989,6 +26123,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' irda-INTERACTS_WITH-aapp-rev: @@ -24011,6 +26147,8 @@ x-bte-kgs-operations: semantic: DiagnosticAid predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-AUGMENTS-celc: @@ -24033,6 +26171,8 @@ x-bte-kgs-operations: semantic: CellularComponent predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -24059,6 +26199,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -24083,8 +26225,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PathologicalProcess - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-PREDISPOSES-patf-rev: @@ -24105,8 +26249,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Procedure - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-COEXISTS_WITH-bacs: @@ -24129,6 +26275,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-COEXISTS_WITH-bacs-rev: @@ -24151,6 +26299,8 @@ x-bte-kgs-operations: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' elii-INTERACTS_WITH-elii: @@ -24173,6 +26323,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' elii-INTERACTS_WITH-elii-rev: @@ -24195,6 +26347,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' antb-INHIBITS-gngm-rev: @@ -24217,6 +26371,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -24243,6 +26399,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' comd-AFFECTS-celf-rev: @@ -24265,6 +26423,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' fndg-PREDISPOSES-mobd: @@ -24285,8 +26445,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orgf-PROCESS_OF-aggp: @@ -24309,6 +26471,8 @@ x-bte-kgs-operations: semantic: Cohort predicate: occurs_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orgf-PROCESS_OF-aggp-rev: @@ -24331,6 +26495,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' sosy-CAUSES-dsyn: @@ -24353,6 +26519,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' sosy-CAUSES-dsyn-rev: @@ -24375,6 +26543,8 @@ x-bte-kgs-operations: semantic: PhenotypicFeature predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-INTERACTS_WITH-gngm_umls-rev: @@ -24397,6 +26567,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' phsu-TREATS-comd: @@ -24417,8 +26589,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fngs-LOCATION_OF-carb: @@ -24441,6 +26615,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' horm-AFFECTS-bpoc-rev: @@ -24463,6 +26639,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-INTERACTS_WITH-aapp: @@ -24485,6 +26663,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-INTERACTS_WITH-aapp-rev: @@ -24507,6 +26687,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-ASSOCIATED_WITH-neop-rev: @@ -24529,6 +26711,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-COEXISTS_WITH-virs: @@ -24551,6 +26735,8 @@ x-bte-kgs-operations: semantic: Virus predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-COEXISTS_WITH-virs-rev: @@ -24573,6 +26759,8 @@ x-bte-kgs-operations: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' patf-AFFECTS-celf: @@ -24595,6 +26783,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' anab-COEXISTS_WITH-dsyn-rev: @@ -24614,9 +26804,11 @@ x-bte-kgs-operations: AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-STIMULATES-bacs_umls: @@ -24639,6 +26831,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -24665,6 +26859,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -24691,6 +26887,8 @@ x-bte-kgs-operations: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' nnon-AUGMENTS-celf-rev: @@ -24713,6 +26911,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -24739,6 +26939,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' neop-COEXISTS_WITH-patf-rev: @@ -24761,6 +26963,8 @@ x-bte-kgs-operations: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celc-LOCATION_OF-diap: @@ -24783,6 +26987,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-LOCATION_OF-diap-rev: @@ -24805,6 +27011,8 @@ x-bte-kgs-operations: semantic: CellularComponent predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-PART_OF-cell: @@ -24827,6 +27035,8 @@ x-bte-kgs-operations: semantic: Cell predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-PART_OF-cell-rev: @@ -24849,6 +27059,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-COEXISTS_WITH-hops: @@ -24871,6 +27083,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inch-STIMULATES-gngm-rev: @@ -24893,6 +27107,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -24917,8 +27133,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PathologicalProcess - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' moft-CAUSES-moft: @@ -24941,6 +27159,8 @@ x-bte-kgs-operations: semantic: MolecularActivity predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' moft-CAUSES-moft-rev: @@ -24963,6 +27183,8 @@ x-bte-kgs-operations: semantic: MolecularActivity predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' medd-TREATS-sosy: @@ -24983,8 +27205,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PhenotypicFeature - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' medd-TREATS-sosy-rev: @@ -25005,8 +27229,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Device - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-ASSOCIATED_WITH-comd: @@ -25029,6 +27255,8 @@ x-bte-kgs-operations: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AFFECTS-neop: @@ -25051,6 +27279,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AFFECTS-neop-rev: @@ -25073,6 +27303,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bsoj-LOCATION_OF-cgab: @@ -25095,6 +27327,8 @@ x-bte-kgs-operations: semantic: Disease predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-INTERACTS_WITH-lipd: @@ -25117,6 +27351,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' hops-INTERACTS_WITH-aapp-rev: @@ -25139,6 +27375,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bsoj-LOCATION_OF-bsoj: @@ -25161,6 +27399,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bsoj-LOCATION_OF-bsoj-rev: @@ -25183,6 +27423,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-AFFECTS-ortf_umls: @@ -25205,6 +27447,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-CAUSES-celf: @@ -25227,6 +27471,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-CAUSES-celf-rev: @@ -25249,6 +27495,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-CAUSES-phsf: @@ -25271,6 +27519,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' lipd-CAUSES-dsyn-rev: @@ -25293,6 +27543,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' moft_umls-AFFECTS-gngm_ncbigene: @@ -25315,6 +27567,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' moft_umls-AFFECTS-gngm_ncbigene-rev: @@ -25337,6 +27591,8 @@ x-bte-kgs-operations: semantic: MolecularActivity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bsoj-LOCATION_OF-bdsu: @@ -25359,6 +27615,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-CAUSES-dsyn: @@ -25381,6 +27639,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-CAUSES-dsyn-rev: @@ -25403,6 +27663,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-COEXISTS_WITH-aapp: @@ -25425,6 +27687,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-COEXISTS_WITH-aapp-rev: @@ -25447,6 +27711,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-COEXISTS_WITH-gngm: @@ -25469,6 +27735,8 @@ x-bte-kgs-operations: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-COEXISTS_WITH-gngm-rev: @@ -25491,6 +27759,8 @@ x-bte-kgs-operations: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-DISRUPTS-neop: @@ -25513,6 +27783,8 @@ x-bte-kgs-operations: semantic: Disease predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-DISRUPTS-neop-rev: @@ -25535,6 +27807,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' medd-TREATS-anab: @@ -25554,9 +27828,11 @@ x-bte-kgs-operations: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease - predicate: treats + semantic: PhenotypicFeature + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs_umls-COEXISTS_WITH-gngm_ncbigene: @@ -25579,6 +27855,8 @@ x-bte-kgs-operations: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' bacs_umls-COEXISTS_WITH-gngm_ncbigene-rev: @@ -25601,6 +27879,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-DISRUPTS-patf: @@ -25623,6 +27903,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-DISRUPTS-patf-rev: @@ -25645,6 +27927,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-INTERACTS_WITH-aapp-rev: @@ -25667,6 +27951,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-TREATS-acab: @@ -25687,8 +27973,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nsba-AFFECTS-bpoc-rev: @@ -25711,6 +27999,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-AFFECTS-inpo: @@ -25733,6 +28023,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nnon-AFFECTS-neop-rev: @@ -25755,6 +28047,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-CAUSES-neop: @@ -25777,6 +28071,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-ASSOCIATED_WITH-patf_umls-rev: @@ -25799,6 +28095,8 @@ x-bte-kgs-operations: semantic: Gene predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' orch-AUGMENTS-fndg: @@ -25821,6 +28119,8 @@ x-bte-kgs-operations: semantic: DiseaseOrPhenotypicFeature predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -25847,6 +28147,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -25873,6 +28175,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: occurs_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-PROCESS_OF-emod-rev: @@ -25895,6 +28199,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bdsu-LOCATION_OF-gngm: @@ -25917,6 +28223,8 @@ x-bte-kgs-operations: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bdsu-LOCATION_OF-gngm-rev: @@ -25939,6 +28247,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-INTERACTS_WITH-nnon: @@ -25961,6 +28271,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inbe-AFFECTS-inbe: @@ -25983,6 +28295,8 @@ x-bte-kgs-operations: semantic: Behavior predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inbe-AFFECTS-inbe-rev: @@ -26005,6 +28319,8 @@ x-bte-kgs-operations: semantic: Behavior predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-LOCATION_OF-phsu: @@ -26027,6 +28343,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-DISRUPTS-neop: @@ -26049,6 +28367,8 @@ x-bte-kgs-operations: semantic: Disease predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-DISRUPTS-neop-rev: @@ -26071,6 +28391,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-AUGMENTS-fndg: @@ -26093,6 +28415,8 @@ x-bte-kgs-operations: semantic: DiseaseOrPhenotypicFeature predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -26119,6 +28443,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -26145,6 +28471,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' virs-INTERACTS_WITH-dsyn: @@ -26167,6 +28495,8 @@ x-bte-kgs-operations: semantic: Disease predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' virs-INTERACTS_WITH-dsyn-rev: @@ -26189,6 +28519,8 @@ x-bte-kgs-operations: semantic: Virus predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-AFFECTS-celc: @@ -26211,6 +28543,8 @@ x-bte-kgs-operations: semantic: CellularComponent predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-AFFECTS-celc-rev: @@ -26233,6 +28567,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-STIMULATES-lipd: @@ -26255,6 +28591,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -26281,6 +28619,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AFFECTS-sosy: @@ -26303,6 +28643,8 @@ x-bte-kgs-operations: semantic: PhenotypicFeature predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AFFECTS-sosy-rev: @@ -26325,6 +28667,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu_umls-INHIBITS-gngm_ncbigene-rev: @@ -26347,6 +28691,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -26373,6 +28719,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' patf-PRECEDES-dsyn: @@ -26395,6 +28743,8 @@ x-bte-kgs-operations: semantic: Disease predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-PRECEDES-dsyn-rev: @@ -26417,6 +28767,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsf-ASSOCIATED_WITH-phsu: @@ -26439,6 +28791,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsf-ASSOCIATED_WITH-phsu-rev: @@ -26461,6 +28815,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-COEXISTS_WITH-aapp: @@ -26483,6 +28839,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-COEXISTS_WITH-aapp-rev: @@ -26505,6 +28863,8 @@ x-bte-kgs-operations: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' antb-INTERACTS_WITH-antb: @@ -26527,6 +28887,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' antb-INTERACTS_WITH-antb-rev: @@ -26549,6 +28911,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-PRECEDES-mobd: @@ -26571,6 +28935,8 @@ x-bte-kgs-operations: semantic: Disease predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' virs-COEXISTS_WITH-virs: @@ -26593,6 +28959,8 @@ x-bte-kgs-operations: semantic: Virus predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' virs-COEXISTS_WITH-virs-rev: @@ -26615,6 +28983,8 @@ x-bte-kgs-operations: semantic: Virus predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-LOCATION_OF-eico: @@ -26637,6 +29007,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' strd-PART_OF-bpoc-rev: @@ -26659,6 +29031,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-CAUSES-sosy-rev: @@ -26681,6 +29055,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-PREDISPOSES-neop: @@ -26701,8 +29077,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inch-INTERACTS_WITH-bacs-rev: @@ -26725,6 +29103,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-INTERACTS_WITH-virs: @@ -26747,6 +29127,8 @@ x-bte-kgs-operations: semantic: Virus predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-INTERACTS_WITH-virs-rev: @@ -26769,6 +29151,8 @@ x-bte-kgs-operations: semantic: Disease predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' emst-LOCATION_OF-orch-rev: @@ -26791,6 +29175,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-AFFECTS-phsf: @@ -26813,6 +29199,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-COEXISTS_WITH-phsu-rev: @@ -26835,6 +29223,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-AUGMENTS-patf: @@ -26857,6 +29247,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -26883,6 +29275,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -26909,6 +29303,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-INTERACTS_WITH-irda: @@ -26931,6 +29327,8 @@ x-bte-kgs-operations: semantic: DiagnosticAid predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-INTERACTS_WITH-irda-rev: @@ -26953,6 +29351,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-AFFECTS-acab: @@ -26975,6 +29375,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PRODUCES-orch: @@ -26997,6 +29399,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PART_OF-emst: @@ -27019,6 +29423,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-AUGMENTS-phsf: @@ -27041,6 +29447,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -27067,6 +29475,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -27093,6 +29503,8 @@ x-bte-kgs-operations: semantic: Disease predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-LOCATION_OF-neop-rev: @@ -27115,6 +29527,8 @@ x-bte-kgs-operations: semantic: CellularComponent predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-INTERACTS_WITH-nsba: @@ -27137,6 +29551,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-STIMULATES-orch: @@ -27159,6 +29575,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -27185,6 +29603,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' neop-PRECEDES-neop: @@ -27207,6 +29627,8 @@ x-bte-kgs-operations: semantic: Disease predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' neop-PRECEDES-neop-rev: @@ -27229,6 +29651,8 @@ x-bte-kgs-operations: semantic: Disease predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-STIMULATES-orch: @@ -27251,6 +29675,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -27275,8 +29701,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dora-PREVENTS-dsyn-rev: @@ -27297,8 +29725,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Activity - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-PART_OF-tisu: @@ -27321,6 +29751,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-LOCATION_OF-gngm: @@ -27343,6 +29775,8 @@ x-bte-kgs-operations: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-LOCATION_OF-gngm-rev: @@ -27365,6 +29799,8 @@ x-bte-kgs-operations: semantic: CellularComponent predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' tisu-AFFECTS-patf: @@ -27387,6 +29823,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' tisu-AFFECTS-patf-rev: @@ -27409,6 +29847,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' antb-TREATS-patf-rev: @@ -27429,8 +29869,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-CAUSES-phsf: @@ -27453,6 +29895,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nsba-ASSOCIATED_WITH-dsyn-rev: @@ -27475,6 +29919,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' plnt-LOCATION_OF-nusq: @@ -27497,6 +29943,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' plnt-LOCATION_OF-nusq-rev: @@ -27519,6 +29967,8 @@ x-bte-kgs-operations: semantic: Plant predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-AUGMENTS-cell-rev: @@ -27541,6 +29991,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -27567,6 +30019,8 @@ x-bte-kgs-operations: semantic: PhenotypicFeature predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-CAUSES-sosy-rev: @@ -27589,6 +30043,8 @@ x-bte-kgs-operations: semantic: Gene predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' medd-PREVENTS-dsyn: @@ -27609,8 +30065,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' medd-PREVENTS-dsyn-rev: @@ -27631,8 +30089,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Device - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-COEXISTS_WITH-gngm: @@ -27655,6 +30115,8 @@ x-bte-kgs-operations: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-COEXISTS_WITH-gngm-rev: @@ -27677,6 +30139,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-AFFECTS-dsyn-rev: @@ -27699,6 +30163,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-INTERACTS_WITH-bacs-rev: @@ -27721,6 +30187,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-INTERACTS_WITH-inch: @@ -27743,6 +30211,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AFFECTS-comd: @@ -27765,6 +30235,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-ASSOCIATED_WITH-mobd: @@ -27787,6 +30259,8 @@ x-bte-kgs-operations: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-DISRUPTS-patf: @@ -27809,6 +30283,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-DISRUPTS-patf-rev: @@ -27831,6 +30307,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-DISRUPTS-moft_umls: @@ -27853,6 +30331,8 @@ x-bte-kgs-operations: semantic: MolecularActivity predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-DISRUPTS-moft_umls-rev: @@ -27875,6 +30355,8 @@ x-bte-kgs-operations: semantic: Gene predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' inbe-PREDISPOSES-neop: @@ -27895,8 +30377,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-DISRUPTS-phsf: @@ -27919,6 +30403,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' lipd-TREATS-dsyn-rev: @@ -27939,8 +30425,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-DISRUPTS-moft-rev: @@ -27963,6 +30451,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-AUGMENTS-dsyn: @@ -27985,6 +30475,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -28011,6 +30503,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -28037,6 +30531,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-LOCATION_OF-nusq-rev: @@ -28059,6 +30555,8 @@ x-bte-kgs-operations: semantic: CellularComponent predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-PRODUCES-horm: @@ -28081,6 +30579,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-PRODUCES-horm-rev: @@ -28103,6 +30603,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-CAUSES-patf-rev: @@ -28125,6 +30627,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-LOCATION_OF-fngs: @@ -28147,6 +30651,8 @@ x-bte-kgs-operations: semantic: Fungus predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-LOCATION_OF-fngs-rev: @@ -28169,6 +30675,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' elii-AFFECTS-orgf-rev: @@ -28191,6 +30699,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' food-PREDISPOSES-dsyn: @@ -28211,8 +30721,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' food-PREDISPOSES-dsyn-rev: @@ -28233,8 +30745,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Food - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-DISRUPTS-orgf_umls: @@ -28257,6 +30771,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' mobd-AFFECTS-mobd: @@ -28279,6 +30795,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' mobd-AFFECTS-mobd-rev: @@ -28301,6 +30819,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' patf-PRECEDES-patf: @@ -28323,6 +30843,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-PRECEDES-patf-rev: @@ -28345,6 +30867,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' ortf-AFFECTS-patf-rev: @@ -28367,6 +30891,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-PART_OF-nusq: @@ -28389,6 +30915,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PART_OF-nusq-rev: @@ -28411,6 +30939,8 @@ x-bte-kgs-operations: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd-TREATS-dsyn-rev: @@ -28431,8 +30961,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch_umls-INTERACTS_WITH-aapp_ncbigene-rev: @@ -28455,6 +30987,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-AFFECTS-bpoc_umls: @@ -28477,6 +31011,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-AFFECTS-bpoc_umls-rev: @@ -28499,6 +31035,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' lipd-COEXISTS_WITH-bacs-rev: @@ -28521,6 +31059,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-PREVENTS-neop: @@ -28541,8 +31081,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' emst-LOCATION_OF-neop-rev: @@ -28565,6 +31107,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-AFFECTS-fndg_umls: @@ -28587,6 +31131,8 @@ x-bte-kgs-operations: semantic: DiseaseOrPhenotypicFeature predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-AFFECTS-fndg_umls-rev: @@ -28609,6 +31155,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' orgf-PRODUCES-bacs-rev: @@ -28631,6 +31179,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-ASSOCIATED_WITH-mobd: @@ -28653,6 +31203,8 @@ x-bte-kgs-operations: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-AFFECTS-biof: @@ -28675,6 +31227,8 @@ x-bte-kgs-operations: semantic: Phenomenon predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-AFFECTS-biof-rev: @@ -28697,6 +31251,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-AFFECTS-phsf: @@ -28719,6 +31275,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-ASSOCIATED_WITH-bact: @@ -28741,6 +31299,8 @@ x-bte-kgs-operations: semantic: Bacterium predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-ASSOCIATED_WITH-bact-rev: @@ -28763,6 +31323,8 @@ x-bte-kgs-operations: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' irda-CAUSES-dsyn: @@ -28785,6 +31347,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' irda-CAUSES-dsyn-rev: @@ -28807,6 +31371,8 @@ x-bte-kgs-operations: semantic: DiagnosticAid predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-PRODUCES-aapp_ncbigene: @@ -28829,6 +31395,8 @@ x-bte-kgs-operations: semantic: Gene predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' gngm_ncbigene-PRODUCES-aapp_ncbigene-rev: @@ -28851,6 +31419,8 @@ x-bte-kgs-operations: semantic: Gene predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' emst-PART_OF-cell: @@ -28873,6 +31443,8 @@ x-bte-kgs-operations: semantic: Cell predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' emst-PART_OF-cell-rev: @@ -28895,6 +31467,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-PRODUCES-bacs: @@ -28917,6 +31491,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' lipd-STIMULATES-aapp-rev: @@ -28939,6 +31515,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -28965,6 +31543,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-LOCATION_OF-emod-rev: @@ -28987,6 +31567,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-AUGMENTS-dsyn: @@ -29009,6 +31591,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -29035,6 +31619,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -29061,6 +31647,8 @@ x-bte-kgs-operations: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-COEXISTS_WITH-bacs_umls: @@ -29083,6 +31671,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-COEXISTS_WITH-bacs_umls-rev: @@ -29105,6 +31695,8 @@ x-bte-kgs-operations: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' imft-PART_OF-tisu: @@ -29127,6 +31719,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-PART_OF-tisu-rev: @@ -29149,6 +31743,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-STIMULATES-gngm-rev: @@ -29171,6 +31767,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -29197,6 +31795,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' virs-CAUSES-patf-rev: @@ -29219,6 +31819,8 @@ x-bte-kgs-operations: semantic: Virus predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' acab-PART_OF-bact: @@ -29241,6 +31843,8 @@ x-bte-kgs-operations: semantic: Bacterium predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' acab-PART_OF-bact-rev: @@ -29263,6 +31867,8 @@ x-bte-kgs-operations: semantic: Disease predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-PREDISPOSES-mobd: @@ -29283,8 +31889,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-AFFECTS-tisu: @@ -29307,6 +31915,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-INTERACTS_WITH-hops: @@ -29329,6 +31939,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-DISRUPTS-moft_umls-rev: @@ -29351,6 +31963,8 @@ x-bte-kgs-operations: semantic: Gene predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' virs-INTERACTS_WITH-virs: @@ -29373,6 +31987,8 @@ x-bte-kgs-operations: semantic: Virus predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' virs-INTERACTS_WITH-virs-rev: @@ -29395,6 +32011,8 @@ x-bte-kgs-operations: semantic: Virus predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-STIMULATES-phsu: @@ -29417,6 +32035,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -29443,6 +32063,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu_umls-STIMULATES-gngm_ncbigene-rev: @@ -29465,6 +32087,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -29491,6 +32115,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-PREDISPOSES-patf: @@ -29511,8 +32137,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PathologicalProcess - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-PREDISPOSES-patf-rev: @@ -29533,8 +32161,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' elii-CAUSES-dsyn-rev: @@ -29557,6 +32187,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-AFFECTS-sosy: @@ -29579,6 +32211,8 @@ x-bte-kgs-operations: semantic: PhenotypicFeature predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-AFFECTS-sosy-rev: @@ -29601,6 +32235,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bact-LOCATION_OF-lipd: @@ -29623,6 +32259,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-COEXISTS_WITH-lipd: @@ -29645,6 +32283,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-STIMULATES-nsba: @@ -29667,6 +32307,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -29693,6 +32335,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -29719,6 +32363,8 @@ x-bte-kgs-operations: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' comd-AFFECTS-patf-rev: @@ -29741,6 +32387,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' food-PREDISPOSES-neop: @@ -29761,8 +32409,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu_ncbigene-TREATS-dsyn_umls-rev: @@ -29783,8 +32433,10 @@ x-bte-kgs-operations: outputs: - id: NCBIGene semantic: Gene - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' aapp_ncbigene-STIMULATES-aapp_umls: @@ -29807,6 +32459,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -29833,6 +32487,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -29857,8 +32513,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PathologicalProcess - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-PART_OF-bpoc: @@ -29881,6 +32539,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AUGMENTS-neop: @@ -29903,6 +32563,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -29929,6 +32591,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-CAUSES-patf-rev: @@ -29951,6 +32615,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-INTERACTS_WITH-orch: @@ -29973,6 +32639,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-COEXISTS_WITH-imft: @@ -29995,6 +32663,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-COEXISTS_WITH-imft-rev: @@ -30017,6 +32687,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-COEXISTS_WITH-bacs_umls-rev: @@ -30039,6 +32711,8 @@ x-bte-kgs-operations: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' orgf-AFFECTS-phsf: @@ -30061,6 +32735,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' mobd-AFFECTS-inbe: @@ -30083,6 +32759,8 @@ x-bte-kgs-operations: semantic: Behavior predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' mobd-AFFECTS-inbe-rev: @@ -30105,6 +32783,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-AUGMENTS-ortf_umls: @@ -30127,6 +32807,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -30153,6 +32835,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' food-AFFECTS-dsyn-rev: @@ -30175,6 +32859,8 @@ x-bte-kgs-operations: semantic: Food predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' mobd-OCCURS_IN-aggp-rev: @@ -30197,6 +32883,8 @@ x-bte-kgs-operations: semantic: Disease predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops_umls-STIMULATES-gngm_ncbigene-rev: @@ -30219,6 +32907,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -30245,6 +32935,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' lipd-PART_OF-cell-rev: @@ -30267,6 +32959,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' medd-TREATS-mobd: @@ -30287,8 +32981,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bact-INTERACTS_WITH-bact: @@ -30311,6 +33007,8 @@ x-bte-kgs-operations: semantic: Bacterium predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bact-INTERACTS_WITH-bact-rev: @@ -30333,6 +33031,8 @@ x-bte-kgs-operations: semantic: Bacterium predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell-INTERACTS_WITH-aapp: @@ -30355,6 +33055,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-INTERACTS_WITH-aapp-rev: @@ -30377,6 +33079,8 @@ x-bte-kgs-operations: semantic: Cell predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-PREDISPOSES-dsyn-rev: @@ -30397,8 +33101,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' clnd-TREATS-dsyn: @@ -30419,8 +33125,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' clnd-TREATS-dsyn-rev: @@ -30441,8 +33149,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Drug - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dora-TREATS-sosy: @@ -30463,8 +33173,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PhenotypicFeature - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dora-TREATS-sosy-rev: @@ -30485,8 +33197,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Activity - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' antb-COEXISTS_WITH-antb: @@ -30509,6 +33223,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' antb-COEXISTS_WITH-antb-rev: @@ -30531,6 +33247,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celc-LOCATION_OF-fngs: @@ -30553,6 +33271,8 @@ x-bte-kgs-operations: semantic: Fungus predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-LOCATION_OF-fngs-rev: @@ -30575,6 +33295,8 @@ x-bte-kgs-operations: semantic: CellularComponent predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-INHIBITS-gngm-rev: @@ -30597,6 +33319,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -30623,6 +33347,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inch-AUGMENTS-celf-rev: @@ -30645,6 +33371,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -30671,6 +33399,8 @@ x-bte-kgs-operations: semantic: MolecularActivity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-AFFECTS-moft-rev: @@ -30693,6 +33423,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-AUGMENTS-orgf_umls: @@ -30715,6 +33447,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -30739,8 +33473,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' carb-INTERACTS_WITH-bacs-rev: @@ -30763,6 +33499,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bdsu-LOCATION_OF-phsu: @@ -30785,6 +33523,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-STIMULATES-bacs_umls-rev: @@ -30807,6 +33547,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -30833,6 +33575,8 @@ x-bte-kgs-operations: semantic: Bacterium predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' emst-PART_OF-bact-rev: @@ -30855,6 +33599,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' ortf-AFFECTS-orga-rev: @@ -30877,6 +33623,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-AFFECTS-orgf-rev: @@ -30899,6 +33647,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-INTERACTS_WITH-horm_umls: @@ -30921,6 +33671,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-DISRUPTS-cell: @@ -30943,6 +33695,8 @@ x-bte-kgs-operations: semantic: Cell predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-DISRUPTS-cell-rev: @@ -30965,6 +33719,8 @@ x-bte-kgs-operations: semantic: Disease predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' irda-INTERACTS_WITH-bacs: @@ -30987,6 +33743,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' irda-INTERACTS_WITH-bacs-rev: @@ -31009,6 +33767,8 @@ x-bte-kgs-operations: semantic: DiagnosticAid predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm_umls-INTERACTS_WITH-aapp_ncbigene-rev: @@ -31031,6 +33791,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' medd-TREATS-acab: @@ -31051,8 +33813,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-ADMINISTERED_TO-cell_umls: @@ -31075,6 +33839,8 @@ x-bte-kgs-operations: semantic: Cell predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-ADMINISTERED_TO-cell_umls-rev: @@ -31097,6 +33863,8 @@ x-bte-kgs-operations: semantic: Gene predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' cell-PART_OF-virs: @@ -31119,6 +33887,8 @@ x-bte-kgs-operations: semantic: Virus predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-PART_OF-virs-rev: @@ -31141,6 +33911,8 @@ x-bte-kgs-operations: semantic: Cell predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' food-CAUSES-patf: @@ -31163,6 +33935,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' food-CAUSES-patf-rev: @@ -31185,6 +33959,8 @@ x-bte-kgs-operations: semantic: Food predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-AFFECTS-ortf: @@ -31207,6 +33983,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inch-COEXISTS_WITH-elii: @@ -31229,6 +34007,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-STIMULATES-horm_umls: @@ -31251,6 +34031,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -31277,6 +34059,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nsba-INHIBITS-gngm-rev: @@ -31299,6 +34083,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -31325,6 +34111,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' tisu-PART_OF-bact-rev: @@ -31347,6 +34135,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celc-LOCATION_OF-bacs: @@ -31369,6 +34159,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bdsu_umls-LOCATION_OF-gngm_ncbigene: @@ -31391,6 +34183,8 @@ x-bte-kgs-operations: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' gngm_ncbigene-AFFECTS-patf_umls: @@ -31413,6 +34207,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-AFFECTS-patf_umls-rev: @@ -31435,6 +34231,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' dsyn-CAUSES-acab: @@ -31457,6 +34255,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-PRODUCES-bacs: @@ -31479,6 +34279,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-PRODUCES-bacs-rev: @@ -31501,6 +34303,8 @@ x-bte-kgs-operations: semantic: CellularComponent predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' neop_umls-PRODUCES-aapp_ncbigene: @@ -31523,6 +34327,8 @@ x-bte-kgs-operations: semantic: Gene predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' neop_umls-PRODUCES-aapp_ncbigene-rev: @@ -31545,6 +34351,8 @@ x-bte-kgs-operations: semantic: Disease predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-INTERACTS_WITH-aapp-rev: @@ -31567,6 +34375,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-INHIBITS-aapp-rev: @@ -31589,6 +34399,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -31615,6 +34427,8 @@ x-bte-kgs-operations: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' virs-LOCATION_OF-bacs: @@ -31637,6 +34451,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' virs-LOCATION_OF-bacs-rev: @@ -31659,6 +34475,8 @@ x-bte-kgs-operations: semantic: Virus predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' patf-AFFECTS-neop: @@ -31681,6 +34499,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' elii-STIMULATES-gngm-rev: @@ -31703,6 +34523,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -31729,6 +34551,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nnon-AFFECTS-celf-rev: @@ -31751,6 +34575,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' acab-LOCATION_OF-neop: @@ -31773,6 +34599,8 @@ x-bte-kgs-operations: semantic: Disease predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' acab-LOCATION_OF-neop-rev: @@ -31795,6 +34623,8 @@ x-bte-kgs-operations: semantic: Disease predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' patf-COEXISTS_WITH-acab: @@ -31817,6 +34647,8 @@ x-bte-kgs-operations: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' mobd-AFFECTS-orgf-rev: @@ -31839,6 +34671,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-DISRUPTS-bpoc: @@ -31861,6 +34695,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-DISRUPTS-bpoc-rev: @@ -31883,6 +34719,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celf-AFFECTS-orga-rev: @@ -31905,6 +34743,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-PART_OF-bpoc: @@ -31927,6 +34767,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-PART_OF-bpoc-rev: @@ -31949,6 +34791,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-INHIBITS-gngm-rev: @@ -31971,6 +34815,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -31995,8 +34841,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dora-PREDISPOSES-dsyn-rev: @@ -32017,8 +34865,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Activity - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-AUGMENTS-moft-rev: @@ -32041,6 +34891,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -32067,6 +34919,8 @@ x-bte-kgs-operations: semantic: Fungus predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-PART_OF-fngs-rev: @@ -32089,6 +34943,8 @@ x-bte-kgs-operations: semantic: Cell predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' sosy-PREDISPOSES-dsyn: @@ -32109,8 +34965,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' sosy-PREDISPOSES-dsyn-rev: @@ -32131,8 +34989,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PhenotypicFeature - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' medd-CAUSES-dsyn: @@ -32155,6 +35015,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' medd-CAUSES-dsyn-rev: @@ -32177,6 +35039,8 @@ x-bte-kgs-operations: semantic: Device predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-INTERACTS_WITH-orch_umls: @@ -32199,6 +35063,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' mobd-MANIFESTATION_OF-dsyn: @@ -32221,6 +35087,8 @@ x-bte-kgs-operations: semantic: Disease predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' mobd-MANIFESTATION_OF-dsyn-rev: @@ -32243,6 +35111,8 @@ x-bte-kgs-operations: semantic: Disease predicate: has_manifestation source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celc-PRODUCES-aapp: @@ -32265,6 +35135,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-PRODUCES-aapp-rev: @@ -32287,6 +35159,8 @@ x-bte-kgs-operations: semantic: CellularComponent predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-USES-clnd: @@ -32309,6 +35183,8 @@ x-bte-kgs-operations: semantic: Drug predicate: has_input source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-USES-clnd-rev: @@ -32331,6 +35207,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: is_input_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inbe-AFFECTS-orgf: @@ -32353,6 +35231,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inbe-AFFECTS-orgf-rev: @@ -32375,6 +35255,8 @@ x-bte-kgs-operations: semantic: Behavior predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' medd-PREVENTS-patf: @@ -32395,8 +35277,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PathologicalProcess - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' medd-PREVENTS-patf-rev: @@ -32417,8 +35301,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Device - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-CAUSES-patf_umls: @@ -32441,6 +35327,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-CAUSES-patf_umls-rev: @@ -32463,6 +35351,8 @@ x-bte-kgs-operations: semantic: Gene predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' antb-STIMULATES-gngm-rev: @@ -32485,6 +35375,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -32511,6 +35403,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-ASSOCIATED_WITH-neop-rev: @@ -32533,6 +35427,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' patf-COMPLICATES-dsyn: @@ -32553,8 +35449,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: exacerbates + predicate: exacerbates_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-COMPLICATES-dsyn-rev: @@ -32575,8 +35473,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PathologicalProcess - predicate: is_exacerbated_by + predicate: condition_exacerbated_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-COEXISTS_WITH-anab: @@ -32596,9 +35496,11 @@ x-bte-kgs-operations: _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-STIMULATES-aapp-rev: @@ -32621,6 +35523,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -32647,6 +35551,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' lipd-AFFECTS-celf-rev: @@ -32669,6 +35575,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-AFFECTS-phsf_umls: @@ -32691,6 +35599,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' comd-AFFECTS-dsyn-rev: @@ -32713,6 +35623,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-CAUSES-sosy-rev: @@ -32735,6 +35647,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-COEXISTS_WITH-bacs-rev: @@ -32757,6 +35671,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-AFFECTS-orgf-rev: @@ -32779,6 +35695,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-PREDISPOSES-dsyn_umls: @@ -32799,8 +35717,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-PREDISPOSES-dsyn_umls-rev: @@ -32821,8 +35741,10 @@ x-bte-kgs-operations: outputs: - id: NCBIGene semantic: Gene - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' horm-AFFECTS-cell-rev: @@ -32845,6 +35767,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-DISRUPTS-orgf: @@ -32867,6 +35791,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_umls-COEXISTS_WITH-gngm_ncbigene: @@ -32889,6 +35815,8 @@ x-bte-kgs-operations: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' gngm_umls-COEXISTS_WITH-gngm_ncbigene-rev: @@ -32911,6 +35839,8 @@ x-bte-kgs-operations: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-STIMULATES-bacs-rev: @@ -32933,6 +35863,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -32959,6 +35891,8 @@ x-bte-kgs-operations: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celf-COEXISTS_WITH-neop-rev: @@ -32981,6 +35915,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-INTERACTS_WITH-irda: @@ -33003,6 +35939,8 @@ x-bte-kgs-operations: semantic: DiagnosticAid predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-INTERACTS_WITH-irda-rev: @@ -33025,6 +35963,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-DISRUPTS-dsyn: @@ -33047,6 +35987,8 @@ x-bte-kgs-operations: semantic: Disease predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-LOCATION_OF-nusq: @@ -33069,6 +36011,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-LOCATION_OF-nusq-rev: @@ -33091,6 +36035,8 @@ x-bte-kgs-operations: semantic: Cell predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inbe-PROCESS_OF-aggp: @@ -33113,6 +36059,8 @@ x-bte-kgs-operations: semantic: Cohort predicate: occurs_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inbe-PROCESS_OF-aggp-rev: @@ -33135,6 +36083,8 @@ x-bte-kgs-operations: semantic: Behavior predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-COEXISTS_WITH-comd: @@ -33157,6 +36107,8 @@ x-bte-kgs-operations: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-AFFECTS-patf_umls-rev: @@ -33179,6 +36131,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' bacs-PART_OF-emst: @@ -33201,6 +36155,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nnon-AUGMENTS-cell-rev: @@ -33223,12 +36179,38 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased + anab-LOCATION_OF-neop: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:neop AND + _exists_:object.umls AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Disease + predicate: location_of + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' anab-LOCATION_OF-neop-rev: - supportBatch: True useTemplating: True @@ -33246,9 +36228,11 @@ x-bte-kgs-operations: _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-INHIBITS-gngm_umls-rev: @@ -33271,6 +36255,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -33295,8 +36281,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' sosy-CAUSES-orgf: @@ -33319,6 +36307,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' sosy-CAUSES-orgf-rev: @@ -33341,6 +36331,8 @@ x-bte-kgs-operations: semantic: PhenotypicFeature predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' elii-CAUSES-inpo-rev: @@ -33363,6 +36355,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq_umls-COEXISTS_WITH-gngm_ncbigene: @@ -33385,6 +36379,8 @@ x-bte-kgs-operations: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' nusq_umls-COEXISTS_WITH-gngm_ncbigene-rev: @@ -33407,6 +36403,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PREDISPOSES-comd: @@ -33427,8 +36425,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' neop-AFFECTS-virs: @@ -33451,6 +36451,8 @@ x-bte-kgs-operations: semantic: Virus predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' neop-AFFECTS-virs-rev: @@ -33473,6 +36475,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-CONVERTS_TO-gngm: @@ -33495,6 +36499,8 @@ x-bte-kgs-operations: semantic: Gene predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-CONVERTS_TO-gngm-rev: @@ -33517,6 +36523,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-AUGMENTS-bpoc_umls: @@ -33539,6 +36547,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -33565,6 +36575,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -33591,6 +36603,8 @@ x-bte-kgs-operations: semantic: CellularComponent predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -33617,6 +36631,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -33643,6 +36659,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-CONVERTS_TO-bacs: @@ -33665,6 +36683,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-CONVERTS_TO-bacs-rev: @@ -33687,6 +36707,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bact-INTERACTS_WITH-aapp: @@ -33709,6 +36731,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bact-INTERACTS_WITH-aapp-rev: @@ -33731,6 +36755,8 @@ x-bte-kgs-operations: semantic: Bacterium predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nsba-PART_OF-cell-rev: @@ -33753,6 +36779,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-DISRUPTS-moft: @@ -33775,6 +36803,8 @@ x-bte-kgs-operations: semantic: MolecularActivity predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-DISRUPTS-moft-rev: @@ -33797,6 +36827,8 @@ x-bte-kgs-operations: semantic: Gene predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-ASSOCIATED_WITH-patf-rev: @@ -33819,6 +36851,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-INTERACTS_WITH-carb: @@ -33841,6 +36875,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-STIMULATES-inch: @@ -33863,6 +36899,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -33889,6 +36927,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-CAUSES-patf-rev: @@ -33911,6 +36951,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell-LOCATION_OF-phsu: @@ -33933,6 +36975,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-STIMULATES-aapp_umls-rev: @@ -33955,6 +36999,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -33981,6 +37027,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' elii-COEXISTS_WITH-aapp-rev: @@ -34003,6 +37051,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-STIMULATES-nsba: @@ -34025,6 +37075,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -34051,6 +37103,8 @@ x-bte-kgs-operations: semantic: Gene predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-PRODUCES-gngm-rev: @@ -34073,6 +37127,8 @@ x-bte-kgs-operations: semantic: Cell predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nsba-CAUSES-patf-rev: @@ -34095,6 +37151,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nsba-AUGMENTS-ortf-rev: @@ -34117,6 +37175,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -34143,6 +37203,8 @@ x-bte-kgs-operations: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' nnon-CAUSES-dsyn-rev: @@ -34165,6 +37227,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bdsu-CAUSES-dsyn: @@ -34187,6 +37251,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bdsu-CAUSES-dsyn-rev: @@ -34209,6 +37275,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bact-LOCATION_OF-nusq: @@ -34231,6 +37299,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bact-LOCATION_OF-nusq-rev: @@ -34253,6 +37323,8 @@ x-bte-kgs-operations: semantic: Bacterium predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-DISRUPTS-cell: @@ -34275,6 +37347,8 @@ x-bte-kgs-operations: semantic: Cell predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-DISRUPTS-cell-rev: @@ -34297,6 +37371,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' eico-PART_OF-bpoc-rev: @@ -34319,6 +37395,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-INTERACTS_WITH-bacs-rev: @@ -34341,6 +37419,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-STIMULATES-bacs-rev: @@ -34363,6 +37443,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -34389,6 +37471,8 @@ x-bte-kgs-operations: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-STIMULATES-elii: @@ -34411,6 +37495,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -34437,6 +37523,8 @@ x-bte-kgs-operations: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-AUGMENTS-tisu: @@ -34459,6 +37547,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -34485,6 +37575,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' phsu-AFFECTS-patf-rev: @@ -34507,6 +37599,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celc_umls-LOCATION_OF-gngm_ncbigene: @@ -34529,6 +37623,8 @@ x-bte-kgs-operations: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' nsba-STIMULATES-bacs-rev: @@ -34551,6 +37647,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -34577,6 +37675,8 @@ x-bte-kgs-operations: semantic: Gene predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' antb-INTERACTS_WITH-aapp-rev: @@ -34599,6 +37699,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-PRODUCES-bacs_umls: @@ -34621,6 +37723,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-PRODUCES-bacs_umls-rev: @@ -34643,6 +37747,8 @@ x-bte-kgs-operations: semantic: Gene predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' eico-STIMULATES-gngm-rev: @@ -34665,6 +37771,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -34691,6 +37799,8 @@ x-bte-kgs-operations: semantic: Disease predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-DISRUPTS-neop-rev: @@ -34713,6 +37823,8 @@ x-bte-kgs-operations: semantic: Gene predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-AUGMENTS-ortf: @@ -34735,6 +37847,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -34761,6 +37875,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -34787,6 +37903,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -34813,6 +37931,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-AUGMENTS-comd: @@ -34835,6 +37955,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -34861,6 +37983,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -34887,6 +38011,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' antb-PREVENTS-dsyn-rev: @@ -34907,8 +38033,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' irda-CAUSES-patf: @@ -34931,6 +38059,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' irda-CAUSES-patf-rev: @@ -34953,6 +38083,8 @@ x-bte-kgs-operations: semantic: DiagnosticAid predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' virs_umls-LOCATION_OF-aapp_ncbigene: @@ -34975,6 +38107,8 @@ x-bte-kgs-operations: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' virs_umls-LOCATION_OF-aapp_ncbigene-rev: @@ -34997,6 +38131,8 @@ x-bte-kgs-operations: semantic: Virus predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' patf-PRODUCES-bacs: @@ -35019,6 +38155,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-PRODUCES-bacs-rev: @@ -35041,6 +38179,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-INTERACTS_WITH-nnon_umls: @@ -35063,6 +38203,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-COEXISTS_WITH-cgab: @@ -35085,6 +38227,8 @@ x-bte-kgs-operations: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-COEXISTS_WITH-aapp: @@ -35107,6 +38251,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-COEXISTS_WITH-aapp-rev: @@ -35129,6 +38275,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-DISRUPTS-neop-rev: @@ -35151,6 +38299,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celf-PRODUCES-imft: @@ -35173,6 +38323,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celf-PRODUCES-imft-rev: @@ -35195,6 +38347,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-COEXISTS_WITH-carb: @@ -35217,6 +38371,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsf-AFFECTS-dsyn-rev: @@ -35239,6 +38395,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-PREDISPOSES-dsyn-rev: @@ -35259,8 +38417,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' sosy-CAUSES-sosy: @@ -35283,6 +38443,8 @@ x-bte-kgs-operations: semantic: PhenotypicFeature predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' sosy-CAUSES-sosy-rev: @@ -35305,6 +38467,8 @@ x-bte-kgs-operations: semantic: PhenotypicFeature predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-PREVENTS-inpo-rev: @@ -35325,8 +38489,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-INHIBITS-horm: @@ -35349,6 +38515,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -35375,6 +38543,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-CONVERTS_TO-orch-rev: @@ -35397,6 +38567,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-AFFECTS-patf: @@ -35419,6 +38591,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AFFECTS-patf-rev: @@ -35441,6 +38615,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' patf-COEXISTS_WITH-anab: @@ -35460,11 +38636,37 @@ x-bte-kgs-operations: _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' + patf-COEXISTS_WITH-anab-rev: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: object.umls + parameters: + fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:patf + AND _exists_:subject.umls AND pmid_count:>3 + outputs: + - id: UMLS + semantic: PathologicalProcess + predicate: coexists_with + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-AUGMENTS-bpoc-rev: - supportBatch: True useTemplating: True @@ -35485,6 +38687,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -35511,6 +38715,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-COEXISTS_WITH-nusq-rev: @@ -35533,6 +38739,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-LOCATION_OF-horm: @@ -35555,6 +38763,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' neop-AFFECTS-patf-rev: @@ -35577,6 +38787,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-CONVERTS_TO-bacs: @@ -35599,6 +38811,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-CONVERTS_TO-bacs-rev: @@ -35621,6 +38835,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-COEXISTS_WITH-aapp_ncbigene: @@ -35643,6 +38859,8 @@ x-bte-kgs-operations: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' gngm_ncbigene-AFFECTS-dsyn_umls: @@ -35665,6 +38883,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-AFFECTS-dsyn_umls-rev: @@ -35687,6 +38907,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' plnt-LOCATION_OF-bacs: @@ -35709,6 +38931,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' ortf-PROCESS_OF-aggp-rev: @@ -35731,6 +38955,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-PART_OF-celc: @@ -35753,6 +38979,8 @@ x-bte-kgs-operations: semantic: CellularComponent predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-PART_OF-celc-rev: @@ -35775,6 +39003,8 @@ x-bte-kgs-operations: semantic: Protein predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celf-AFFECTS-comd: @@ -35797,6 +39027,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celf-AFFECTS-biof: @@ -35819,6 +39051,8 @@ x-bte-kgs-operations: semantic: Phenomenon predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celf-AFFECTS-biof-rev: @@ -35841,6 +39075,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-STIMULATES-bacs-rev: @@ -35863,6 +39099,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -35889,6 +39127,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' horm-COEXISTS_WITH-horm-rev: @@ -35911,6 +39151,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-ASSOCIATED_WITH-comd: @@ -35933,6 +39175,8 @@ x-bte-kgs-operations: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' horm-AFFECTS-moft-rev: @@ -35955,6 +39199,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inpo-OCCURS_IN-aggp: @@ -35977,6 +39223,8 @@ x-bte-kgs-operations: semantic: Cohort predicate: occurs_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inpo-OCCURS_IN-aggp-rev: @@ -35999,6 +39247,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' patf-OCCURS_IN-aggp-rev: @@ -36021,6 +39271,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-LOCATION_OF-nusq: @@ -36043,6 +39295,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-LOCATION_OF-nusq-rev: @@ -36065,6 +39319,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orgf-PRECEDES-ortf: @@ -36087,6 +39343,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-TREATS-neop: @@ -36107,8 +39365,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-CAUSES-inpo_umls: @@ -36131,6 +39391,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' anst-PART_OF-virs: @@ -36153,6 +39415,8 @@ x-bte-kgs-operations: semantic: Virus predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' anst-PART_OF-virs-rev: @@ -36175,6 +39439,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-AFFECTS-celc_umls: @@ -36197,6 +39463,8 @@ x-bte-kgs-operations: semantic: CellularComponent predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-AFFECTS-celc_umls-rev: @@ -36219,6 +39487,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' aapp-DISRUPTS-tisu: @@ -36241,6 +39511,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' horm-COEXISTS_WITH-aapp-rev: @@ -36263,6 +39535,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-AFFECTS-comd: @@ -36285,6 +39559,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-INHIBITS-aapp-rev: @@ -36307,6 +39583,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -36333,6 +39611,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-DISRUPTS-ortf: @@ -36355,6 +39635,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-PREVENTS-mobd: @@ -36375,8 +39657,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-STIMULATES-eico: @@ -36399,6 +39683,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -36425,6 +39711,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: occurs_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celf-PROCESS_OF-emod-rev: @@ -36447,6 +39735,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-PREDISPOSES-dsyn: @@ -36467,8 +39757,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' virs-INTERACTS_WITH-bact: @@ -36491,6 +39783,8 @@ x-bte-kgs-operations: semantic: Bacterium predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' virs-INTERACTS_WITH-bact-rev: @@ -36513,6 +39807,8 @@ x-bte-kgs-operations: semantic: Virus predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd-AUGMENTS-celf-rev: @@ -36535,6 +39831,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -36559,8 +39857,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PathologicalProcess - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dora-TREATS-patf-rev: @@ -36581,8 +39881,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Activity - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PART_OF-aapp: @@ -36605,6 +39907,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PART_OF-aapp-rev: @@ -36627,6 +39931,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-STIMULATES-phsu: @@ -36649,6 +39955,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -36675,6 +39983,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -36701,6 +40011,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-INTERACTS_WITH-bact_umls: @@ -36723,6 +40035,8 @@ x-bte-kgs-operations: semantic: Bacterium predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-INTERACTS_WITH-bact_umls-rev: @@ -36745,6 +40059,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' cell-PRODUCES-horm: @@ -36767,6 +40083,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' horm-STIMULATES-bacs-rev: @@ -36789,6 +40107,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -36815,6 +40135,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -36841,6 +40163,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -36867,6 +40191,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -36893,6 +40219,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-ASSOCIATED_WITH-sosy: @@ -36915,6 +40243,8 @@ x-bte-kgs-operations: semantic: PhenotypicFeature predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-ASSOCIATED_WITH-sosy-rev: @@ -36937,6 +40267,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-PREDISPOSES-dsyn_umls-rev: @@ -36957,8 +40289,10 @@ x-bte-kgs-operations: outputs: - id: NCBIGene semantic: Gene - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' aapp-INTERACTS_WITH-bodm: @@ -36981,6 +40315,8 @@ x-bte-kgs-operations: semantic: Device predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-INTERACTS_WITH-bodm-rev: @@ -37003,6 +40339,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-AFFECTS-neop_umls: @@ -37025,6 +40363,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-AFFECTS-neop_umls-rev: @@ -37047,6 +40387,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' lipd-AUGMENTS-bpoc-rev: @@ -37069,6 +40411,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -37095,6 +40439,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -37121,6 +40467,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -37147,6 +40495,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AFFECTS-dsyn: @@ -37169,8 +40519,58 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' + sbst-CAUSES-patf: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: ChemicalEntity + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: PathologicalProcess + predicate: causes + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' + sbst-CAUSES-patf-rev: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PathologicalProcess + requestBody: + body: + q: '{{ queryInputs }}' + scopes: object.umls + parameters: + fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:sbst AND _exists_:subject.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: ChemicalEntity + predicate: caused_by + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-AFFECTS-cell-rev: - supportBatch: True useTemplating: True @@ -37191,6 +40591,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' patf-AFFECTS-phsf: @@ -37213,6 +40615,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs_umls-COEXISTS_WITH-aapp_ncbigene: @@ -37235,6 +40639,8 @@ x-bte-kgs-operations: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' orgf-AFFECTS-mobd: @@ -37257,6 +40663,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' comd-PRODUCES-bacs: @@ -37279,6 +40687,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' comd-PRODUCES-bacs-rev: @@ -37301,6 +40711,8 @@ x-bte-kgs-operations: semantic: Disease predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' neop-COEXISTS_WITH-celf: @@ -37323,6 +40735,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' neop-COEXISTS_WITH-celf-rev: @@ -37345,6 +40759,8 @@ x-bte-kgs-operations: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch_umls-COEXISTS_WITH-gngm_ncbigene-rev: @@ -37367,6 +40783,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-CAUSES-patf: @@ -37389,6 +40807,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-CAUSES-patf-rev: @@ -37411,6 +40831,8 @@ x-bte-kgs-operations: semantic: Gene predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-ASSOCIATED_WITH-mobd: @@ -37433,6 +40855,8 @@ x-bte-kgs-operations: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-ASSOCIATED_WITH-patf: @@ -37455,6 +40879,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-ASSOCIATED_WITH-patf-rev: @@ -37477,6 +40903,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-DISRUPTS-celf: @@ -37499,6 +40927,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-DISRUPTS-celf-rev: @@ -37521,6 +40951,8 @@ x-bte-kgs-operations: semantic: Disease predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-AUGMENTS-neop: @@ -37543,6 +40975,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -37569,6 +41003,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -37595,6 +41031,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-COEXISTS_WITH-aapp-rev: @@ -37617,6 +41055,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsf-ASSOCIATED_WITH-orch: @@ -37639,6 +41079,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inch_umls-STIMULATES-gngm_ncbigene-rev: @@ -37661,6 +41103,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -37687,6 +41131,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-AFFECTS-dsyn-rev: @@ -37709,6 +41155,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-CAUSES-sosy-rev: @@ -37731,6 +41179,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-STIMULATES-elii: @@ -37753,6 +41203,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -37779,6 +41231,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-INTERACTS_WITH-eico: @@ -37801,6 +41255,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AFFECTS-mobd: @@ -37823,6 +41279,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' elii-INHIBITS-gngm-rev: @@ -37845,6 +41303,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -37871,6 +41331,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -37897,6 +41359,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-COEXISTS_WITH-imft-rev: @@ -37919,6 +41383,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu_umls-INTERACTS_WITH-aapp_ncbigene-rev: @@ -37941,6 +41407,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-AUGMENTS-moft-rev: @@ -37963,6 +41431,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -37989,6 +41459,8 @@ x-bte-kgs-operations: semantic: Fungus predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-PART_OF-fngs-rev: @@ -38011,6 +41483,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-PREVENTS-sosy-rev: @@ -38031,8 +41505,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-STIMULATES-aapp: @@ -38055,6 +41531,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -38081,12 +41559,62 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased + sbst-CAUSES-dsyn: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: ChemicalEntity + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Disease + predicate: causes + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' + sbst-CAUSES-dsyn-rev: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: Disease + requestBody: + body: + q: '{{ queryInputs }}' + scopes: object.umls + parameters: + fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:sbst AND _exists_:subject.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: ChemicalEntity + predicate: caused_by + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-COEXISTS_WITH-carb: - supportBatch: True useTemplating: True @@ -38107,6 +41635,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nnon-AUGMENTS-bpoc-rev: @@ -38129,6 +41659,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -38155,6 +41687,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-COEXISTS_WITH-aapp-rev: @@ -38177,6 +41711,8 @@ x-bte-kgs-operations: semantic: Protein predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs_umls-STIMULATES-aapp_ncbigene: @@ -38199,6 +41735,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: @@ -38225,6 +41763,8 @@ x-bte-kgs-operations: semantic: Gene predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' lipd-COEXISTS_WITH-aapp-rev: @@ -38247,6 +41787,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-AUGMENTS-acab: @@ -38269,6 +41811,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -38295,6 +41839,8 @@ x-bte-kgs-operations: semantic: Disease predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsf-AFFECTS-patf-rev: @@ -38317,6 +41863,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inpo-CAUSES-anab: @@ -38336,9 +41884,11 @@ x-bte-kgs-operations: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-INTERACTS_WITH-aapp: @@ -38361,6 +41911,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-INTERACTS_WITH-aapp-rev: @@ -38383,6 +41935,8 @@ x-bte-kgs-operations: semantic: Protein predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-INTERACTS_WITH-phsu_umls: @@ -38405,6 +41959,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AFFECTS-phsf: @@ -38427,6 +41983,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nnon-DISRUPTS-celf-rev: @@ -38449,6 +42007,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-AFFECTS-bpoc-rev: @@ -38471,6 +42031,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-INTERACTS_WITH-rcpt: @@ -38493,6 +42055,8 @@ x-bte-kgs-operations: semantic: Protein predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-INTERACTS_WITH-rcpt-rev: @@ -38515,6 +42079,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell-LOCATION_OF-emod: @@ -38537,6 +42103,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-LOCATION_OF-emod-rev: @@ -38559,6 +42127,8 @@ x-bte-kgs-operations: semantic: Cell predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' acab-LOCATION_OF-bact: @@ -38581,6 +42151,8 @@ x-bte-kgs-operations: semantic: Bacterium predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' acab-LOCATION_OF-bact-rev: @@ -38603,6 +42175,8 @@ x-bte-kgs-operations: semantic: Disease predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-DISRUPTS-celf-rev: @@ -38625,6 +42199,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cgab-LOCATION_OF-neop-rev: @@ -38647,6 +42223,8 @@ x-bte-kgs-operations: semantic: Disease predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PREVENTS-neop: @@ -38667,8 +42245,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PREVENTS-neop-rev: @@ -38689,8 +42269,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Polypeptide - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' medd-CAUSES-patf: @@ -38713,6 +42295,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' medd-CAUSES-patf-rev: @@ -38735,6 +42319,8 @@ x-bte-kgs-operations: semantic: Device predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell-PRODUCES-imft: @@ -38757,6 +42343,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-PRODUCES-imft-rev: @@ -38779,6 +42367,8 @@ x-bte-kgs-operations: semantic: Cell predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' opco-CAUSES-dsyn-rev: @@ -38801,8 +42391,34 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' + anab-PART_OF-neop: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Disease + predicate: part_of + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' anab-PART_OF-neop-rev: - supportBatch: True useTemplating: True @@ -38820,9 +42436,11 @@ x-bte-kgs-operations: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-COEXISTS_WITH-bacs: @@ -38845,6 +42463,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-COEXISTS_WITH-bacs-rev: @@ -38867,6 +42487,8 @@ x-bte-kgs-operations: semantic: Protein predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-STIMULATES-lipd: @@ -38889,6 +42511,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -38915,6 +42539,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nsba-AFFECTS-cell-rev: @@ -38937,6 +42563,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' antb-AFFECTS-dsyn-rev: @@ -38959,6 +42587,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-PRODUCES-horm: @@ -38981,6 +42611,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-STIMULATES-imft: @@ -39003,6 +42635,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -39029,6 +42663,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -39055,6 +42691,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nnon_umls-INTERACTS_WITH-aapp_ncbigene-rev: @@ -39077,6 +42715,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' elii-AUGMENTS-cell-rev: @@ -39099,6 +42739,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -39125,6 +42767,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -39151,6 +42795,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-INHIBITS-horm: @@ -39173,6 +42819,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -39197,8 +42845,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsf-AFFECTS-orga-rev: @@ -39221,6 +42871,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-PREDISPOSES-patf-rev: @@ -39241,8 +42893,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-DISRUPTS-cell-rev: @@ -39265,6 +42919,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-INHIBITS-inch: @@ -39287,6 +42943,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -39313,6 +42971,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-AFFECTS-orgf-rev: @@ -39335,6 +42995,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-PREDISPOSES-neop_umls: @@ -39355,8 +43017,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-CAUSES-comd: @@ -39379,6 +43043,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsf-AFFECTS-bpoc: @@ -39401,6 +43067,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsf-AFFECTS-bpoc-rev: @@ -39423,6 +43091,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-PREDISPOSES-comd: @@ -39443,8 +43113,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell_umls-PRODUCES-gngm_ncbigene: @@ -39467,6 +43139,8 @@ x-bte-kgs-operations: semantic: Gene predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' aapp-INTERACTS_WITH-strd: @@ -39489,6 +43163,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-STIMULATES-cell: @@ -39511,6 +43187,8 @@ x-bte-kgs-operations: semantic: Cell predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -39537,6 +43215,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -39563,6 +43243,8 @@ x-bte-kgs-operations: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-INHIBITS-aapp_umls-rev: @@ -39585,6 +43267,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -39611,6 +43295,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -39637,6 +43323,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-STIMULATES-aapp_ncbigene: @@ -39659,6 +43347,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: @@ -39683,8 +43373,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-AFFECTS-mobd: @@ -39707,6 +43399,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-COEXISTS_WITH-imft: @@ -39729,6 +43423,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-COEXISTS_WITH-imft-rev: @@ -39751,6 +43447,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-DISRUPTS-acab: @@ -39773,6 +43471,8 @@ x-bte-kgs-operations: semantic: Disease predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-DISRUPTS-patf-rev: @@ -39795,6 +43495,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' medd-PREVENTS-inpo: @@ -39815,8 +43517,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PathologicalProcess - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-PART_OF-fngs: @@ -39839,6 +43543,8 @@ x-bte-kgs-operations: semantic: Fungus predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-PART_OF-fngs-rev: @@ -39861,6 +43567,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PRODUCES-bacs: @@ -39883,6 +43591,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-CAUSES-cgab: @@ -39905,6 +43615,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' neop-PART_OF-virs: @@ -39927,6 +43639,8 @@ x-bte-kgs-operations: semantic: Virus predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' neop-PART_OF-virs-rev: @@ -39949,6 +43663,8 @@ x-bte-kgs-operations: semantic: Disease predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' acab-COEXISTS_WITH-patf-rev: @@ -39971,6 +43687,8 @@ x-bte-kgs-operations: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc_umls-PRODUCES-aapp_ncbigene: @@ -39993,6 +43711,8 @@ x-bte-kgs-operations: semantic: Gene predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' bpoc_umls-PRODUCES-aapp_ncbigene-rev: @@ -40015,6 +43735,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-INHIBITS-bacs-rev: @@ -40037,6 +43759,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -40063,6 +43787,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -40089,6 +43815,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -40115,6 +43843,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' biof-AFFECTS-orgf-rev: @@ -40137,6 +43867,8 @@ x-bte-kgs-operations: semantic: Phenomenon predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inbe-PREDISPOSES-mobd: @@ -40157,8 +43889,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cgab-PART_OF-aggp: @@ -40181,6 +43915,8 @@ x-bte-kgs-operations: semantic: Cohort predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cgab-PART_OF-aggp-rev: @@ -40203,6 +43939,8 @@ x-bte-kgs-operations: semantic: Disease predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' diap-DIAGNOSES-comd: @@ -40225,6 +43963,8 @@ x-bte-kgs-operations: semantic: Disease predicate: diagnoses source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' lipd-ASSOCIATED_WITH-patf-rev: @@ -40247,6 +43987,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-AUGMENTS-cell-rev: @@ -40269,6 +44011,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -40295,6 +44039,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -40321,6 +44067,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-COEXISTS_WITH-nusq-rev: @@ -40343,6 +44091,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-INHIBITS-phsu: @@ -40365,6 +44115,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -40391,6 +44143,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-ASSOCIATED_WITH-aapp-rev: @@ -40413,6 +44167,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-DISRUPTS-moft-rev: @@ -40435,6 +44191,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-AFFECTS-biof-rev: @@ -40457,6 +44215,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' acab-AFFECTS-celf-rev: @@ -40479,6 +44239,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-COEXISTS_WITH-aapp-rev: @@ -40501,6 +44263,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' ortf-CAUSES-orgf: @@ -40523,6 +44287,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' ortf-CAUSES-orgf-rev: @@ -40545,6 +44311,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' elii-AUGMENTS-bpoc-rev: @@ -40567,6 +44335,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -40593,6 +44363,8 @@ x-bte-kgs-operations: semantic: CellularComponent predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-DISRUPTS-celc-rev: @@ -40615,6 +44387,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' irda-CAUSES-neop: @@ -40637,6 +44411,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' food-AFFECTS-neop: @@ -40659,6 +44435,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-CAUSES-acab: @@ -40681,6 +44459,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AFFECTS-bpoc: @@ -40703,6 +44483,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AFFECTS-bpoc-rev: @@ -40725,6 +44507,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-INHIBITS-hops: @@ -40747,6 +44531,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -40773,6 +44559,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-COEXISTS_WITH-gngm-rev: @@ -40795,6 +44583,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-INHIBITS-eico: @@ -40817,6 +44607,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -40841,8 +44633,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-AUGMENTS-orgf: @@ -40865,6 +44659,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -40891,6 +44687,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-PART_OF-tisu: @@ -40913,6 +44711,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' strd-INTERACTS_WITH-aapp-rev: @@ -40935,6 +44735,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-PREDISPOSES-neop-rev: @@ -40955,8 +44757,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' comd-AFFECTS-comd: @@ -40979,6 +44783,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bdsu-LOCATION_OF-nsba: @@ -41001,6 +44807,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bdsu-LOCATION_OF-horm: @@ -41023,6 +44831,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' eico-AUGMENTS-orgf-rev: @@ -41045,6 +44855,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -41067,10 +44879,36 @@ x-bte-kgs-operations: filter: predicate:TREATS AND object.semantic_type_abbreviation:anab AND _exists_:object.umls AND pmid_count:>3 outputs: + - id: UMLS + semantic: PhenotypicFeature + predicate: treats_or_applied_or_studied_to_treat + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' + anab-COEXISTS_WITH-cgab: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:cgab AND + _exists_:object.umls AND pmid_count:>3 + outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' lipd-DISRUPTS-orgf-rev: @@ -41093,6 +44931,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-AFFECTS-celc: @@ -41115,6 +44955,8 @@ x-bte-kgs-operations: semantic: CellularComponent predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AFFECTS-celc-rev: @@ -41137,6 +44979,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-AFFECTS-bpoc_umls-rev: @@ -41159,6 +45003,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' bodm-INTERACTS_WITH-bacs: @@ -41181,6 +45027,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bodm-INTERACTS_WITH-bacs-rev: @@ -41203,6 +45051,8 @@ x-bte-kgs-operations: semantic: Device predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' medd-PREVENTS-sosy: @@ -41223,8 +45073,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PhenotypicFeature - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' medd-PREVENTS-sosy-rev: @@ -41245,8 +45097,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Device - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nsba-ASSOCIATED_WITH-patf-rev: @@ -41269,6 +45123,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-INHIBITS-inch: @@ -41291,6 +45147,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -41317,6 +45175,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-PRODUCES-bdsu: @@ -41339,6 +45199,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PRODUCES-bdsu-rev: @@ -41361,6 +45223,8 @@ x-bte-kgs-operations: semantic: Gene predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-INHIBITS-bacs_umls-rev: @@ -41383,6 +45247,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -41409,6 +45275,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-PART_OF-nusq-rev: @@ -41431,6 +45299,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-CAUSES-neop_umls: @@ -41453,6 +45323,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' lipd-CAUSES-sosy-rev: @@ -41475,6 +45347,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bdsu-CAUSES-patf: @@ -41497,6 +45371,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bdsu-CAUSES-patf-rev: @@ -41519,6 +45395,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-LOCATION_OF-dsyn: @@ -41541,6 +45419,8 @@ x-bte-kgs-operations: semantic: Disease predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-LOCATION_OF-dsyn-rev: @@ -41563,6 +45443,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nnon-TREATS-neop-rev: @@ -41583,8 +45465,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bdsu-LOCATION_OF-elii: @@ -41607,6 +45491,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bodm-INTERACTS_WITH-aapp: @@ -41629,6 +45515,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bodm-INTERACTS_WITH-aapp-rev: @@ -41651,6 +45539,8 @@ x-bte-kgs-operations: semantic: Device predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-AUGMENTS-ortf-rev: @@ -41673,6 +45563,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -41699,6 +45591,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-DISRUPTS-sosy: @@ -41721,6 +45615,8 @@ x-bte-kgs-operations: semantic: PhenotypicFeature predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-DISRUPTS-sosy-rev: @@ -41743,6 +45639,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-AUGMENTS-bpoc_umls-rev: @@ -41765,6 +45663,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -41791,6 +45691,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-AUGMENTS-patf: @@ -41813,6 +45715,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -41839,6 +45743,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -41865,6 +45771,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bodm-CAUSES-patf-rev: @@ -41887,6 +45795,8 @@ x-bte-kgs-operations: semantic: Device predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-PART_OF-bact: @@ -41909,6 +45819,8 @@ x-bte-kgs-operations: semantic: Bacterium predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-PART_OF-bact-rev: @@ -41931,6 +45843,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' food-AFFECTS-ortf: @@ -41953,6 +45867,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' horm-PREVENTS-patf-rev: @@ -41973,8 +45889,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-AFFECTS-celc_umls-rev: @@ -41997,6 +45915,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' bacs-PART_OF-gngm: @@ -42019,6 +45939,8 @@ x-bte-kgs-operations: semantic: Gene predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-PART_OF-gngm-rev: @@ -42041,6 +45963,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' tisu-LOCATION_OF-fngs-rev: @@ -42063,6 +45987,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-AUGMENTS-bpoc-rev: @@ -42085,6 +46011,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -42111,6 +46039,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' irda-INTERACTS_WITH-orch: @@ -42133,6 +46063,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PRODUCES-eico: @@ -42155,6 +46087,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-AFFECTS-biof_umls: @@ -42177,6 +46111,8 @@ x-bte-kgs-operations: semantic: Phenomenon predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-AFFECTS-biof_umls-rev: @@ -42199,6 +46135,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' acab-PART_OF-fngs: @@ -42221,6 +46159,8 @@ x-bte-kgs-operations: semantic: Fungus predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' acab-PART_OF-fngs-rev: @@ -42243,6 +46183,8 @@ x-bte-kgs-operations: semantic: Disease predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-PREVENTS-mobd: @@ -42263,8 +46205,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-TREATS-comd: @@ -42285,8 +46229,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' elii-INHIBITS-bacs-rev: @@ -42309,6 +46255,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -42335,6 +46283,8 @@ x-bte-kgs-operations: semantic: Cohort predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-PART_OF-aggp-rev: @@ -42357,6 +46307,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bact-CAUSES-neop: @@ -42379,6 +46331,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-INTERACTS_WITH-phsu: @@ -42401,6 +46355,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-PRODUCES-nnon: @@ -42423,6 +46379,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' carb-STIMULATES-bacs-rev: @@ -42445,6 +46403,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -42471,6 +46431,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -42497,6 +46459,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -42523,6 +46487,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -42549,6 +46515,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-AUGMENTS-fndg-rev: @@ -42571,6 +46539,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -42597,6 +46567,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -42621,8 +46593,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell-PRODUCES-orch: @@ -42645,6 +46619,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' tisu-PART_OF-virs: @@ -42667,6 +46643,8 @@ x-bte-kgs-operations: semantic: Virus predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' tisu-PART_OF-virs-rev: @@ -42689,6 +46667,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-AUGMENTS-bpoc-rev: @@ -42711,12 +46691,38 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased + neop-COEXISTS_WITH-anab-rev: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: object.umls + parameters: + fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:neop + AND _exists_:subject.umls AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Disease + predicate: coexists_with + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' elii-DISRUPTS-orgf-rev: - supportBatch: True useTemplating: True @@ -42737,6 +46743,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-AUGMENTS-neop: @@ -42759,6 +46767,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -42785,6 +46795,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -42811,6 +46823,8 @@ x-bte-kgs-operations: semantic: Phenomenon predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-CAUSES-biof-rev: @@ -42833,6 +46847,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dora-PREVENTS-sosy: @@ -42853,8 +46869,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PhenotypicFeature - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dora-PREVENTS-sosy-rev: @@ -42875,8 +46893,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Activity - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-PREVENTS-virs: @@ -42897,8 +46917,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Virus - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-PREVENTS-virs-rev: @@ -42919,8 +46941,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: BiologicalEntity - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-PRECEDES-phsf: @@ -42943,6 +46967,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-PRECEDES-phsf-rev: @@ -42965,6 +46991,8 @@ x-bte-kgs-operations: semantic: Disease predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsf-PROCESS_OF-aggp-rev: @@ -42987,6 +47015,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-AUGMENTS-comd: @@ -43009,6 +47039,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -43035,6 +47067,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -43059,8 +47093,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-INHIBITS-bacs-rev: @@ -43083,6 +47119,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -43109,6 +47147,8 @@ x-bte-kgs-operations: semantic: Phenomenon predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' blor-LOCATION_OF-biof-rev: @@ -43131,6 +47171,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-AFFECTS-sosy-rev: @@ -43153,6 +47195,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' antb_umls-STIMULATES-gngm_ncbigene-rev: @@ -43175,6 +47219,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -43201,6 +47247,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' neop-MANIFESTATION_OF-neop: @@ -43223,6 +47271,8 @@ x-bte-kgs-operations: semantic: Disease predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' neop-MANIFESTATION_OF-neop-rev: @@ -43245,6 +47295,8 @@ x-bte-kgs-operations: semantic: Disease predicate: has_manifestation source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-COEXISTS_WITH-inch_umls: @@ -43267,6 +47319,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' sosy-PREDISPOSES-mobd: @@ -43287,8 +47341,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' horm_umls-INHIBITS-gngm_ncbigene-rev: @@ -43311,6 +47367,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -43337,6 +47395,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-INTERACTS_WITH-bacs-rev: @@ -43359,6 +47419,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inpo-DISRUPTS-celf: @@ -43381,6 +47443,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inpo-DISRUPTS-celf-rev: @@ -43403,6 +47467,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell-PRODUCES-eico: @@ -43425,6 +47491,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-TREATS-cgab: @@ -43445,8 +47513,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' mobd-CAUSES-dsyn-rev: @@ -43469,6 +47539,8 @@ x-bte-kgs-operations: semantic: Disease predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-CAUSES-cgab: @@ -43491,6 +47563,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-MANIFESTATION_OF-patf: @@ -43513,6 +47587,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-MANIFESTATION_OF-patf-rev: @@ -43535,6 +47611,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: has_manifestation source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-COEXISTS_WITH-nusq: @@ -43557,6 +47635,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-COEXISTS_WITH-nusq-rev: @@ -43579,6 +47659,8 @@ x-bte-kgs-operations: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-DISRUPTS-comd: @@ -43601,6 +47683,8 @@ x-bte-kgs-operations: semantic: Disease predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AUGMENTS-bpoc: @@ -43623,6 +47707,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -43649,6 +47735,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' food-AFFECTS-patf: @@ -43671,6 +47759,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' food-AFFECTS-patf-rev: @@ -43693,6 +47783,8 @@ x-bte-kgs-operations: semantic: Food predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-PART_OF-virs-rev: @@ -43715,6 +47807,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' diap-CAUSES-sosy: @@ -43737,6 +47831,8 @@ x-bte-kgs-operations: semantic: PhenotypicFeature predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' diap-CAUSES-sosy-rev: @@ -43759,6 +47855,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-PREDISPOSES-inpo: @@ -43779,8 +47877,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PathologicalProcess - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' strd-CAUSES-dsyn-rev: @@ -43803,6 +47903,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bdsu-LOCATION_OF-antb: @@ -43825,6 +47927,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AUGMENTS-ortf: @@ -43847,6 +47951,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -43873,6 +47979,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-PRODUCES-imft-rev: @@ -43895,6 +48003,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-INTERACTS_WITH-nsba_umls: @@ -43917,6 +48027,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' neop-PRODUCES-bacs-rev: @@ -43939,6 +48051,8 @@ x-bte-kgs-operations: semantic: Disease predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PREDISPOSES-mobd: @@ -43959,8 +48073,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' eico-INTERACTS_WITH-aapp-rev: @@ -43983,6 +48099,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' eico_umls-STIMULATES-gngm_ncbigene-rev: @@ -44005,6 +48123,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -44031,6 +48151,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bact-LOCATION_OF-inch: @@ -44053,6 +48175,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nsba-COEXISTS_WITH-aapp-rev: @@ -44075,6 +48199,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' ortf-PRECEDES-orgf-rev: @@ -44097,6 +48223,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' irda-CAUSES-comd: @@ -44119,6 +48247,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-TREATS-dsyn-rev: @@ -44139,8 +48269,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-ASSOCIATED_WITH-patf-rev: @@ -44163,6 +48295,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-ASSOCIATED_WITH-inpo: @@ -44185,6 +48319,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-PREVENTS-virs: @@ -44205,8 +48341,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Virus - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-PREVENTS-virs-rev: @@ -44227,8 +48365,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Procedure - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-INTERACTS_WITH-irda-rev: @@ -44251,6 +48391,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-INHIBITS-lipd: @@ -44273,6 +48415,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -44299,6 +48443,8 @@ x-bte-kgs-operations: semantic: Disease predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-INTERACTS_WITH-imft: @@ -44321,6 +48467,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-INTERACTS_WITH-imft-rev: @@ -44343,6 +48491,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' emst-LOCATION_OF-virs-rev: @@ -44365,6 +48515,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bact-LOCATION_OF-elii: @@ -44387,6 +48539,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_umls-COEXISTS_WITH-aapp_ncbigene: @@ -44409,6 +48563,8 @@ x-bte-kgs-operations: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' imft_umls-STIMULATES-gngm_ncbigene: @@ -44431,6 +48587,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: @@ -44457,6 +48615,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -44483,6 +48643,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-PRODUCES-aapp_umls-rev: @@ -44505,6 +48667,8 @@ x-bte-kgs-operations: semantic: Gene predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' bodm-CAUSES-dsyn-rev: @@ -44527,6 +48691,8 @@ x-bte-kgs-operations: semantic: Device predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-LOCATION_OF-neop: @@ -44549,6 +48715,8 @@ x-bte-kgs-operations: semantic: Disease predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' virs-LOCATION_OF-imft: @@ -44571,6 +48739,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' virs-LOCATION_OF-imft-rev: @@ -44593,6 +48763,8 @@ x-bte-kgs-operations: semantic: Virus predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch_umls-INHIBITS-aapp_ncbigene: @@ -44615,6 +48787,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: @@ -44641,6 +48815,8 @@ x-bte-kgs-operations: semantic: Device predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bodm-INTERACTS_WITH-bodm-rev: @@ -44663,6 +48839,8 @@ x-bte-kgs-operations: semantic: Device predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-INHIBITS-elii: @@ -44685,6 +48863,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -44711,6 +48891,8 @@ x-bte-kgs-operations: semantic: Cell predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-AFFECTS-cell-rev: @@ -44733,6 +48915,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-ASSOCIATED_WITH-inpo_umls: @@ -44755,6 +48939,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' eico-STIMULATES-bacs-rev: @@ -44777,6 +48963,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -44803,6 +48991,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-AFFECTS-tisu_umls: @@ -44825,6 +49015,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-PRECEDES-comd: @@ -44847,6 +49039,8 @@ x-bte-kgs-operations: semantic: Disease predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' medd-CAUSES-inpo: @@ -44869,6 +49063,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' medd_umls-USES-phsu_ncbigene: @@ -44891,6 +49087,8 @@ x-bte-kgs-operations: semantic: Gene predicate: has_input source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' medd_umls-USES-phsu_ncbigene-rev: @@ -44913,6 +49111,8 @@ x-bte-kgs-operations: semantic: Device predicate: is_input_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_umls-COEXISTS_WITH-aapp_ncbigene: @@ -44935,6 +49135,8 @@ x-bte-kgs-operations: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' nusq-ASSOCIATED_WITH-patf: @@ -44957,6 +49159,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-ASSOCIATED_WITH-patf-rev: @@ -44979,6 +49183,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-INTERACTS_WITH-eico: @@ -45001,6 +49207,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' hops_umls-INHIBITS-gngm_ncbigene-rev: @@ -45023,6 +49231,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -45049,6 +49259,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-AFFECTS-sosy-rev: @@ -45071,6 +49283,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-INHIBITS-hops: @@ -45093,6 +49307,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -45119,6 +49335,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-MANIFESTATION_OF-patf: @@ -45141,6 +49359,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-MANIFESTATION_OF-patf-rev: @@ -45163,6 +49383,8 @@ x-bte-kgs-operations: semantic: Disease predicate: has_manifestation source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cgab-OCCURS_IN-aggp-rev: @@ -45185,6 +49407,8 @@ x-bte-kgs-operations: semantic: Disease predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' patf-COEXISTS_WITH-comd: @@ -45207,6 +49431,8 @@ x-bte-kgs-operations: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' irda-INTERACTS_WITH-elii: @@ -45229,6 +49455,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-AFFECTS-comd: @@ -45251,6 +49479,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-ASSOCIATED_WITH-comd_umls: @@ -45273,6 +49503,8 @@ x-bte-kgs-operations: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' lipd-ADMINISTERED_TO-cell-rev: @@ -45295,6 +49527,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-PREDISPOSES-patf_umls: @@ -45315,8 +49549,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PathologicalProcess - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-PREDISPOSES-patf_umls-rev: @@ -45337,8 +49573,10 @@ x-bte-kgs-operations: outputs: - id: NCBIGene semantic: Gene - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' hops-AFFECTS-dsyn-rev: @@ -45361,6 +49599,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nsba-AUGMENTS-moft-rev: @@ -45383,6 +49623,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -45406,9 +49648,11 @@ x-bte-kgs-operations: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' eico-INHIBITS-gngm-rev: @@ -45431,6 +49675,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -45457,6 +49703,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -45483,6 +49731,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' carb-DISRUPTS-orgf-rev: @@ -45505,6 +49755,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-PREVENTS-comd: @@ -45525,8 +49777,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' lbtr-PREDISPOSES-dsyn: @@ -45547,8 +49801,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' lbtr-PREDISPOSES-dsyn-rev: @@ -45569,8 +49825,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Phenomenon - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' elii-ASSOCIATED_WITH-patf-rev: @@ -45593,6 +49851,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-DISRUPTS-neop-rev: @@ -45615,6 +49875,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' eico-ASSOCIATED_WITH-dsyn-rev: @@ -45637,6 +49899,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-INHIBITS-aapp: @@ -45659,6 +49923,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -45685,6 +49951,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -45711,6 +49979,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' moft-AFFECTS-aapp-rev: @@ -45733,6 +50003,8 @@ x-bte-kgs-operations: semantic: MolecularActivity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nsba-CAUSES-sosy-rev: @@ -45755,6 +50027,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-COEXISTS_WITH-orch_umls: @@ -45777,6 +50051,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inpo-DISRUPTS-orgf: @@ -45799,6 +50075,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bact_umls-PRODUCES-aapp_ncbigene: @@ -45821,6 +50099,8 @@ x-bte-kgs-operations: semantic: Gene predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' bact_umls-PRODUCES-aapp_ncbigene-rev: @@ -45843,6 +50123,8 @@ x-bte-kgs-operations: semantic: Bacterium predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PART_OF-blor: @@ -45865,6 +50147,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PART_OF-blor-rev: @@ -45887,6 +50171,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-DISRUPTS-neop_umls: @@ -45909,6 +50195,8 @@ x-bte-kgs-operations: semantic: Disease predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-DISRUPTS-neop_umls-rev: @@ -45931,6 +50219,8 @@ x-bte-kgs-operations: semantic: Gene predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' aapp_ncbigene-AUGMENTS-celc_umls: @@ -45953,6 +50243,8 @@ x-bte-kgs-operations: semantic: CellularComponent predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -45979,6 +50271,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -46005,6 +50299,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-INTERACTS_WITH-imft-rev: @@ -46027,6 +50323,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-AUGMENTS-comd-rev: @@ -46049,6 +50347,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -46075,6 +50375,8 @@ x-bte-kgs-operations: semantic: Fungus predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-LOCATION_OF-fngs-rev: @@ -46097,6 +50399,56 @@ x-bte-kgs-operations: semantic: Cell predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' + anab-COEXISTS_WITH-anab: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:anab AND + _exists_:object.umls AND pmid_count:>3 + outputs: + - id: UMLS + semantic: PhenotypicFeature + predicate: coexists_with + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' + anab-COEXISTS_WITH-anab-rev: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: object.umls + parameters: + fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:anab + AND _exists_:subject.umls AND pmid_count:>3 + outputs: + - id: UMLS + semantic: PhenotypicFeature + predicate: coexists_with + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-AUGMENTS-celc_umls-rev: @@ -46119,6 +50471,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -46145,6 +50499,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -46171,6 +50527,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bact-LOCATION_OF-imft: @@ -46193,6 +50551,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bact-LOCATION_OF-imft-rev: @@ -46215,6 +50575,8 @@ x-bte-kgs-operations: semantic: Bacterium predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nnon-AFFECTS-biof-rev: @@ -46237,6 +50599,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-AFFECTS-biof: @@ -46259,6 +50623,8 @@ x-bte-kgs-operations: semantic: Phenomenon predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-AFFECTS-biof-rev: @@ -46281,6 +50647,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' biof-AFFECTS-dsyn: @@ -46303,6 +50671,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' biof-AFFECTS-dsyn-rev: @@ -46325,6 +50695,8 @@ x-bte-kgs-operations: semantic: Phenomenon predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-PART_OF-anst: @@ -46347,6 +50719,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-PART_OF-anst-rev: @@ -46369,6 +50743,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-AUGMENTS-dsyn: @@ -46391,6 +50767,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -46417,6 +50795,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -46443,6 +50823,8 @@ x-bte-kgs-operations: semantic: Plant predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' neop-PART_OF-plnt-rev: @@ -46465,6 +50847,8 @@ x-bte-kgs-operations: semantic: Disease predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' diap-DIAGNOSES-virs: @@ -46487,6 +50871,8 @@ x-bte-kgs-operations: semantic: Virus predicate: diagnoses source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' diap-DIAGNOSES-virs-rev: @@ -46509,6 +50895,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: is_diagnosed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-INTERACTS_WITH-lipd_umls: @@ -46531,6 +50919,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' hops-PREVENTS-dsyn-rev: @@ -46551,8 +50941,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' irda-CAUSES-inpo: @@ -46575,6 +50967,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-STIMULATES-moft: @@ -46597,6 +50991,8 @@ x-bte-kgs-operations: semantic: MolecularActivity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -46623,6 +51019,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -46647,8 +51045,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PathologicalProcess - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PREDISPOSES-patf-rev: @@ -46669,8 +51069,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Gene - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' patf-MANIFESTATION_OF-dsyn: @@ -46693,6 +51095,8 @@ x-bte-kgs-operations: semantic: Disease predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-MANIFESTATION_OF-dsyn-rev: @@ -46715,6 +51119,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: has_manifestation source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' fngs-LOCATION_OF-elii: @@ -46737,6 +51143,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-AFFECTS-biof: @@ -46759,6 +51167,8 @@ x-bte-kgs-operations: semantic: Phenomenon predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-AFFECTS-biof-rev: @@ -46781,6 +51191,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-COEXISTS_WITH-nsba: @@ -46803,6 +51215,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PART_OF-anab: @@ -46822,9 +51236,11 @@ x-bte-kgs-operations: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PART_OF-anab-rev: @@ -46832,7 +51248,7 @@ x-bte-kgs-operations: useTemplating: True inputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature requestBody: body: q: '{{ queryInputs }}' @@ -46847,6 +51263,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-INTERACTS_WITH-bodm: @@ -46869,6 +51287,8 @@ x-bte-kgs-operations: semantic: Device predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-INTERACTS_WITH-bodm-rev: @@ -46891,6 +51311,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bact-CAUSES-orgf: @@ -46913,6 +51335,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bact-CAUSES-orgf-rev: @@ -46935,6 +51359,8 @@ x-bte-kgs-operations: semantic: Bacterium predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' patf-AFFECTS-comd: @@ -46957,6 +51383,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nnon-CAUSES-inpo-rev: @@ -46979,6 +51407,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-PREDISPOSES-dsyn-rev: @@ -46999,8 +51429,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' eico-COEXISTS_WITH-bacs-rev: @@ -47023,6 +51455,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-AFFECTS-cell-rev: @@ -47045,6 +51479,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-ASSOCIATED_WITH-inpo-rev: @@ -47067,6 +51503,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-AUGMENTS-phsf_umls: @@ -47089,6 +51527,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -47115,6 +51555,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-PRODUCES-bdsu: @@ -47137,6 +51579,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-PRODUCES-bdsu-rev: @@ -47159,6 +51603,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq_umls-COEXISTS_WITH-aapp_ncbigene: @@ -47181,6 +51627,8 @@ x-bte-kgs-operations: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' aapp-COEXISTS_WITH-antb: @@ -47203,6 +51651,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' elii-AUGMENTS-fndg-rev: @@ -47225,6 +51675,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -47251,6 +51703,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-DISRUPTS-cell_umls: @@ -47273,6 +51727,8 @@ x-bte-kgs-operations: semantic: Cell predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-DISRUPTS-cell_umls-rev: @@ -47295,6 +51751,8 @@ x-bte-kgs-operations: semantic: Gene predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' lipd-AFFECTS-cell-rev: @@ -47317,8 +51775,34 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' + sbst-CAUSES-inpo: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: ChemicalEntity + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: PathologicalProcess + predicate: causes + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' nsba-COEXISTS_WITH-orch-rev: - supportBatch: True useTemplating: True @@ -47339,6 +51823,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-CAUSES-inpo: @@ -47361,6 +51847,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-INHIBITS-carb: @@ -47383,6 +51871,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -47409,6 +51899,8 @@ x-bte-kgs-operations: semantic: Gene predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' orch-PREVENTS-cgab: @@ -47429,8 +51921,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-DISRUPTS-cell_umls-rev: @@ -47453,6 +51947,8 @@ x-bte-kgs-operations: semantic: Gene predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' strd-ASSOCIATED_WITH-patf-rev: @@ -47475,6 +51971,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celf-PRECEDES-celf-rev: @@ -47497,6 +51995,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' virs-PROCESS_OF-aggp: @@ -47519,6 +52019,8 @@ x-bte-kgs-operations: semantic: Cohort predicate: occurs_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' virs-PROCESS_OF-aggp-rev: @@ -47541,6 +52043,8 @@ x-bte-kgs-operations: semantic: Virus predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-ASSOCIATED_WITH-patf-rev: @@ -47563,6 +52067,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch_umls-INHIBITS-gngm_ncbigene-rev: @@ -47585,6 +52091,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -47611,6 +52119,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -47637,6 +52147,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs_umls-PART_OF-gngm_ncbigene: @@ -47659,6 +52171,8 @@ x-bte-kgs-operations: semantic: Gene predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' emst-LOCATION_OF-gngm-rev: @@ -47681,6 +52195,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-INHIBITS-antb: @@ -47703,6 +52219,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -47729,6 +52247,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-COEXISTS_WITH-nusq-rev: @@ -47751,6 +52271,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' elii-AFFECTS-bpoc-rev: @@ -47773,6 +52295,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-STIMULATES-hops: @@ -47795,6 +52319,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -47821,6 +52347,8 @@ x-bte-kgs-operations: semantic: Virus predicate: diagnoses source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' medd-DIAGNOSES-virs-rev: @@ -47843,6 +52371,8 @@ x-bte-kgs-operations: semantic: Device predicate: is_diagnosed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-INTERACTS_WITH-aapp: @@ -47865,6 +52395,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-INTERACTS_WITH-aapp-rev: @@ -47887,6 +52419,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd-INTERACTS_WITH-bacs-rev: @@ -47909,6 +52443,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-AFFECTS-cell_umls: @@ -47931,6 +52467,8 @@ x-bte-kgs-operations: semantic: Cell predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-AFFECTS-cell_umls-rev: @@ -47953,6 +52491,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' cgab-PART_OF-neop-rev: @@ -47975,6 +52515,8 @@ x-bte-kgs-operations: semantic: Disease predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-AFFECTS-patf-rev: @@ -47997,6 +52539,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-COEXISTS_WITH-bacs: @@ -48019,6 +52563,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-COEXISTS_WITH-bacs-rev: @@ -48041,6 +52587,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nnon-AFFECTS-patf-rev: @@ -48063,6 +52611,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' antb-STIMULATES-bacs-rev: @@ -48085,6 +52635,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -48111,6 +52663,8 @@ x-bte-kgs-operations: semantic: Gene predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' aapp_umls-PRODUCES-aapp_ncbigene-rev: @@ -48133,6 +52687,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-COEXISTS_WITH-phsu_umls: @@ -48155,6 +52711,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-INTERACTS_WITH-bodm-rev: @@ -48177,6 +52735,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd-PART_OF-celc-rev: @@ -48199,6 +52759,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-ASSOCIATED_WITH-sosy: @@ -48221,6 +52783,8 @@ x-bte-kgs-operations: semantic: PhenotypicFeature predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-ASSOCIATED_WITH-sosy-rev: @@ -48243,6 +52807,8 @@ x-bte-kgs-operations: semantic: Gene predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-INHIBITS-gngm: @@ -48265,6 +52831,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -48291,6 +52859,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -48317,6 +52887,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-INTERACTS_WITH-hops: @@ -48339,6 +52911,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' horm-INTERACTS_WITH-strd: @@ -48361,6 +52935,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' medd-TREATS-cgab: @@ -48381,8 +52957,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bdsu-LOCATION_OF-imft: @@ -48405,6 +52983,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bdsu-LOCATION_OF-imft-rev: @@ -48427,6 +53007,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-AFFECTS-tisu-rev: @@ -48449,8 +53031,34 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' + anab-COEXISTS_WITH-neop: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:neop AND + _exists_:object.umls AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Disease + predicate: coexists_with + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-CAUSES-sosy_umls: - supportBatch: True useTemplating: True @@ -48471,6 +53079,8 @@ x-bte-kgs-operations: semantic: PhenotypicFeature predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-CAUSES-sosy_umls-rev: @@ -48493,6 +53103,8 @@ x-bte-kgs-operations: semantic: Gene predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' orch-AFFECTS-moft-rev: @@ -48515,6 +53127,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' comd-PREDISPOSES-patf-rev: @@ -48535,8 +53149,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-AFFECTS-dsyn: @@ -48559,6 +53175,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-AFFECTS-dsyn-rev: @@ -48581,6 +53199,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-ADMINISTERED_TO-aggp: @@ -48603,6 +53223,8 @@ x-bte-kgs-operations: semantic: Cohort predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-ADMINISTERED_TO-aggp-rev: @@ -48625,6 +53247,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-COEXISTS_WITH-orch: @@ -48647,8 +53271,58 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' + sbst-AFFECTS-moft: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: ChemicalEntity + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:moft AND _exists_:object.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: MolecularActivity + predicate: affects + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' + sbst-AFFECTS-moft-rev: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: MolecularActivity + requestBody: + body: + q: '{{ queryInputs }}' + scopes: object.umls + parameters: + fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:sbst AND _exists_:subject.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: ChemicalEntity + predicate: affected_by + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-DISRUPTS-cell: - supportBatch: True useTemplating: True @@ -48669,6 +53343,8 @@ x-bte-kgs-operations: semantic: Cell predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-DISRUPTS-cell-rev: @@ -48691,6 +53367,8 @@ x-bte-kgs-operations: semantic: Gene predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cgab-AFFECTS-orgf-rev: @@ -48713,6 +53391,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' diap-DIAGNOSES-emod: @@ -48735,6 +53415,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: diagnoses source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' diap-DIAGNOSES-emod-rev: @@ -48757,6 +53439,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: is_diagnosed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-DISRUPTS-bpoc: @@ -48779,6 +53463,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-DISRUPTS-bpoc-rev: @@ -48801,6 +53487,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orgf-PRECEDES-phsf: @@ -48823,6 +53511,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' food-AFFECTS-celf: @@ -48845,6 +53535,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-PART_OF-emst: @@ -48867,6 +53559,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inch-INTERACTS_WITH-irda-rev: @@ -48889,6 +53583,32 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' + cgab-COEXISTS_WITH-anab-rev: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: object.umls + parameters: + fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:cgab + AND _exists_:subject.umls AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Disease + predicate: coexists_with + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-DISRUPTS-celc: @@ -48911,6 +53631,8 @@ x-bte-kgs-operations: semantic: CellularComponent predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-DISRUPTS-celc-rev: @@ -48933,6 +53655,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-STIMULATES-aapp-rev: @@ -48955,6 +53679,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -48979,8 +53705,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-DISRUPTS-cell-rev: @@ -49003,6 +53731,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-STIMULATES-lipd_umls: @@ -49025,6 +53755,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -49051,6 +53783,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-INHIBITS-fndg-rev: @@ -49073,6 +53807,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -49099,6 +53835,8 @@ x-bte-kgs-operations: semantic: Cell predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-PART_OF-cell-rev: @@ -49121,6 +53859,8 @@ x-bte-kgs-operations: semantic: Protein predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' irda_umls-INTERACTS_WITH-aapp_ncbigene: @@ -49143,6 +53883,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' irda_umls-INTERACTS_WITH-aapp_ncbigene-rev: @@ -49165,6 +53907,8 @@ x-bte-kgs-operations: semantic: DiagnosticAid predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nsba_umls-COEXISTS_WITH-aapp_ncbigene-rev: @@ -49187,6 +53931,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-COEXISTS_WITH-aapp_umls-rev: @@ -49209,6 +53955,8 @@ x-bte-kgs-operations: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' rcpt-PART_OF-bpoc: @@ -49231,6 +53979,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-PART_OF-bpoc-rev: @@ -49253,6 +54003,8 @@ x-bte-kgs-operations: semantic: Protein predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-AUGMENTS-neop_umls: @@ -49275,6 +54027,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -49301,6 +54055,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -49327,6 +54083,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inpo-COEXISTS_WITH-emod-rev: @@ -49349,6 +54107,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-AUGMENTS-tisu_umls: @@ -49371,6 +54131,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -49397,6 +54159,8 @@ x-bte-kgs-operations: semantic: Phenomenon predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -49423,6 +54187,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -49449,6 +54215,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' opco-CAUSES-inpo-rev: @@ -49471,6 +54239,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-CAUSES-phsf-rev: @@ -49493,6 +54263,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell_umls-INTERACTS_WITH-aapp_ncbigene: @@ -49515,6 +54287,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' aapp-AUGMENTS-inpo: @@ -49537,6 +54311,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -49563,6 +54339,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: @@ -49587,8 +54365,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PathologicalProcess - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-PREVENTS-inpo_umls-rev: @@ -49609,8 +54389,10 @@ x-bte-kgs-operations: outputs: - id: NCBIGene semantic: Gene - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' cell-PRODUCES-bdsu: @@ -49633,6 +54415,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-PRODUCES-bdsu-rev: @@ -49655,6 +54439,8 @@ x-bte-kgs-operations: semantic: Cell predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-INHIBITS-bacs: @@ -49677,6 +54463,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -49703,6 +54491,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -49729,6 +54519,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-TREATS-neop-rev: @@ -49749,8 +54541,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-LOCATION_OF-opco: @@ -49773,6 +54567,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' antb-PREVENTS-patf-rev: @@ -49793,8 +54589,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' fngs-CAUSES-patf: @@ -49817,6 +54615,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fngs-CAUSES-patf-rev: @@ -49839,6 +54639,8 @@ x-bte-kgs-operations: semantic: Fungus predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd-STIMULATES-gngm-rev: @@ -49861,6 +54663,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -49887,6 +54691,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AUGMENTS-sosy: @@ -49909,6 +54715,8 @@ x-bte-kgs-operations: semantic: PhenotypicFeature predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -49935,6 +54743,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -49959,8 +54769,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-TREATS-neop-rev: @@ -49981,8 +54793,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: BiologicalEntity - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-CAUSES-sosy: @@ -50005,6 +54819,8 @@ x-bte-kgs-operations: semantic: PhenotypicFeature predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-CAUSES-sosy-rev: @@ -50027,6 +54843,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bodm-INTERACTS_WITH-orch: @@ -50049,6 +54867,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' tisu-PART_OF-fngs-rev: @@ -50071,6 +54891,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell-LOCATION_OF-nsba: @@ -50093,6 +54915,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' hops-PREVENTS-patf-rev: @@ -50113,8 +54937,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bodm-INTERACTS_WITH-elii: @@ -50137,6 +54963,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-PRODUCES-orch: @@ -50159,6 +54987,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inch-AFFECTS-bpoc-rev: @@ -50181,6 +55011,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-DISRUPTS-ortf: @@ -50203,6 +55035,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-DISRUPTS-ortf-rev: @@ -50225,6 +55059,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' diap-ADMINISTERED_TO-aggp-rev: @@ -50247,6 +55083,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' eico-AFFECTS-ortf-rev: @@ -50269,6 +55107,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' mobd-COEXISTS_WITH-emod: @@ -50291,6 +55131,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' mobd-COEXISTS_WITH-emod-rev: @@ -50313,6 +55155,8 @@ x-bte-kgs-operations: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-DISRUPTS-celc-rev: @@ -50335,6 +55179,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-MANIFESTATION_OF-dsyn-rev: @@ -50357,6 +55203,8 @@ x-bte-kgs-operations: semantic: Disease predicate: has_manifestation source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bodm-INTERACTS_WITH-inch: @@ -50379,6 +55227,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AFFECTS-comd: @@ -50401,6 +55251,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-CAUSES-phsf_umls: @@ -50423,6 +55275,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-COEXISTS_WITH-nsba: @@ -50445,6 +55299,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' irda-INTERACTS_WITH-irda: @@ -50467,6 +55323,8 @@ x-bte-kgs-operations: semantic: DiagnosticAid predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' irda-INTERACTS_WITH-irda-rev: @@ -50489,6 +55347,8 @@ x-bte-kgs-operations: semantic: DiagnosticAid predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' virs-LOCATION_OF-nusq: @@ -50511,6 +55371,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' virs-LOCATION_OF-nusq-rev: @@ -50533,6 +55395,8 @@ x-bte-kgs-operations: semantic: Virus predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' fngs-INTERACTS_WITH-fngs: @@ -50555,6 +55419,8 @@ x-bte-kgs-operations: semantic: Fungus predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fngs-INTERACTS_WITH-fngs-rev: @@ -50577,6 +55443,8 @@ x-bte-kgs-operations: semantic: Fungus predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-AFFECTS-bpoc-rev: @@ -50599,6 +55467,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-CONVERTS_TO-carb: @@ -50621,6 +55491,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PREVENTS-dsyn: @@ -50641,8 +55513,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-CAUSES-mobd_umls: @@ -50665,6 +55539,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-INTERACTS_WITH-inch_umls: @@ -50687,6 +55563,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' strd-AFFECTS-bpoc-rev: @@ -50709,6 +55587,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-PRODUCES-nsba: @@ -50731,6 +55611,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' opco-INHIBITS-gngm-rev: @@ -50753,6 +55635,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -50779,6 +55663,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dora-PREVENTS-patf: @@ -50799,8 +55685,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PathologicalProcess - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dora-PREVENTS-patf-rev: @@ -50821,8 +55709,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Activity - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' antb-AUGMENTS-moft-rev: @@ -50845,6 +55735,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -50871,6 +55763,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-INTERACTS_WITH-antb_umls: @@ -50893,6 +55787,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-DISRUPTS-bpoc-rev: @@ -50915,6 +55811,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-STIMULATES-moft_umls-rev: @@ -50937,6 +55835,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -50963,6 +55863,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-STIMULATES-hops: @@ -50985,6 +55887,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -51011,6 +55915,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' antb-AFFECTS-cell-rev: @@ -51033,6 +55939,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd-INHIBITS-gngm-rev: @@ -51055,6 +55963,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -51081,6 +55991,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-INTERACTS_WITH-nusq-rev: @@ -51103,6 +56015,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-ASSOCIATED_WITH-sosy_umls: @@ -51125,6 +56039,8 @@ x-bte-kgs-operations: semantic: PhenotypicFeature predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-ASSOCIATED_WITH-sosy_umls-rev: @@ -51147,6 +56063,8 @@ x-bte-kgs-operations: semantic: Gene predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' inch-AFFECTS-cell-rev: @@ -51169,6 +56087,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' anst-LOCATION_OF-aapp-rev: @@ -51191,6 +56111,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-AUGMENTS-fndg: @@ -51213,6 +56135,8 @@ x-bte-kgs-operations: semantic: DiseaseOrPhenotypicFeature predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -51239,6 +56163,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -51265,6 +56191,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -51291,6 +56219,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -51317,6 +56247,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nsba-DISRUPTS-bpoc-rev: @@ -51339,6 +56271,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orgf-PRODUCES-imft-rev: @@ -51361,6 +56295,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-STIMULATES-aapp-rev: @@ -51383,6 +56319,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -51409,6 +56347,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orgf-AFFECTS-bact: @@ -51431,6 +56371,8 @@ x-bte-kgs-operations: semantic: Bacterium predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orgf-AFFECTS-bact-rev: @@ -51453,6 +56395,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-same_as-topp: @@ -51475,6 +56419,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-same_as-topp-rev: @@ -51497,6 +56443,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celc_umls-PRODUCES-aapp_ncbigene: @@ -51519,6 +56467,8 @@ x-bte-kgs-operations: semantic: Gene predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' celc_umls-PRODUCES-aapp_ncbigene-rev: @@ -51541,6 +56491,8 @@ x-bte-kgs-operations: semantic: CellularComponent predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' fngs-LOCATION_OF-inch: @@ -51563,6 +56515,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' carb-AUGMENTS-moft-rev: @@ -51585,6 +56539,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -51611,6 +56567,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -51637,8 +56595,34 @@ x-bte-kgs-operations: semantic: Disease predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' + aapp-PART_OF-neop-rev: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: Disease + requestBody: + body: + q: '{{ queryInputs }}' + scopes: object.umls + parameters: + fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Polypeptide + predicate: has_part + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' hops-INHIBITS-nsba-rev: - supportBatch: True useTemplating: True @@ -51659,6 +56643,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -51685,6 +56671,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd-AFFECTS-orgf-rev: @@ -51707,6 +56695,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-AFFECTS-celf: @@ -51729,6 +56719,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-AFFECTS-celf-rev: @@ -51751,6 +56743,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bdsu-PART_OF-aggp: @@ -51773,6 +56767,8 @@ x-bte-kgs-operations: semantic: Cohort predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bdsu-PART_OF-aggp-rev: @@ -51795,6 +56791,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nnon-INTERACTS_WITH-irda-rev: @@ -51817,6 +56815,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-CONVERTS_TO-orch: @@ -51839,6 +56839,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cgab-COEXISTS_WITH-patf-rev: @@ -51861,6 +56863,8 @@ x-bte-kgs-operations: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-PREDISPOSES-sosy: @@ -51881,8 +56885,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PhenotypicFeature - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-PREDISPOSES-sosy-rev: @@ -51903,8 +56909,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Procedure - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' antb-INHIBITS-bacs-rev: @@ -51927,6 +56935,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -51953,6 +56963,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' comd-PROCESS_OF-emod-rev: @@ -51975,6 +56987,8 @@ x-bte-kgs-operations: semantic: Disease predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-TREATS-dsyn-rev: @@ -51995,8 +57009,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell-LOCATION_OF-horm: @@ -52019,6 +57035,32 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' + anab-COEXISTS_WITH-patf: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:patf AND + _exists_:object.umls AND pmid_count:>3 + outputs: + - id: UMLS + semantic: PathologicalProcess + predicate: coexists_with + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' anab-COEXISTS_WITH-patf-rev: @@ -52038,9 +57080,11 @@ x-bte-kgs-operations: AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-INTERACTS_WITH-hops_umls: @@ -52063,6 +57107,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' horm-ASSOCIATED_WITH-sosy-rev: @@ -52085,6 +57131,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-AUGMENTS-ortf-rev: @@ -52107,6 +57155,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -52131,8 +57181,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-AUGMENTS-neop_umls-rev: @@ -52155,6 +57207,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -52181,6 +57235,8 @@ x-bte-kgs-operations: semantic: Fungus predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-PART_OF-fngs-rev: @@ -52203,6 +57259,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsf-PROCESS_OF-emod-rev: @@ -52225,6 +57283,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-AFFECTS-comd_umls: @@ -52247,6 +57307,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inch-STIMULATES-carb: @@ -52269,6 +57331,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -52295,6 +57359,8 @@ x-bte-kgs-operations: semantic: Virus predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bact-INTERACTS_WITH-virs-rev: @@ -52317,6 +57383,8 @@ x-bte-kgs-operations: semantic: Bacterium predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' food-PREDISPOSES-fndg: @@ -52337,8 +57405,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' food-PREDISPOSES-fndg-rev: @@ -52359,8 +57429,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Food - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsf-PRECEDES-orgf-rev: @@ -52383,6 +57455,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PREVENTS-acab: @@ -52403,8 +57477,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-INTERACTS_WITH-nusq: @@ -52427,6 +57503,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-INTERACTS_WITH-nusq-rev: @@ -52449,6 +57527,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd-AUGMENTS-dsyn-rev: @@ -52471,6 +57551,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -52497,6 +57579,8 @@ x-bte-kgs-operations: semantic: MolecularActivity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -52523,6 +57607,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -52549,6 +57635,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -52575,6 +57663,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -52601,6 +57691,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell-LOCATION_OF-opco: @@ -52623,6 +57715,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' biof-AFFECTS-patf: @@ -52645,6 +57739,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' biof-AFFECTS-patf-rev: @@ -52667,6 +57763,8 @@ x-bte-kgs-operations: semantic: Phenomenon predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-AUGMENTS-inpo: @@ -52689,6 +57787,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -52715,6 +57815,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-AFFECTS-patf-rev: @@ -52737,6 +57839,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nsba-AFFECTS-sosy-rev: @@ -52759,6 +57863,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-CAUSES-orgf: @@ -52781,6 +57887,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bact-ASSOCIATED_WITH-sosy: @@ -52803,6 +57911,8 @@ x-bte-kgs-operations: semantic: PhenotypicFeature predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bact-ASSOCIATED_WITH-sosy-rev: @@ -52825,6 +57935,8 @@ x-bte-kgs-operations: semantic: Bacterium predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd_umls-INTERACTS_WITH-aapp_ncbigene-rev: @@ -52847,6 +57959,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' virs-LOCATION_OF-orch: @@ -52869,6 +57983,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-PREDISPOSES-mobd: @@ -52889,8 +58005,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' carb_umls-STIMULATES-gngm_ncbigene-rev: @@ -52913,6 +58031,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -52939,6 +58059,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-COEXISTS_WITH-rcpt: @@ -52961,6 +58083,8 @@ x-bte-kgs-operations: semantic: Protein predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-COEXISTS_WITH-rcpt-rev: @@ -52983,6 +58107,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-DISRUPTS-inpo: @@ -53005,6 +58131,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-DISRUPTS-inpo-rev: @@ -53027,6 +58155,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-AUGMENTS-emst: @@ -53049,6 +58179,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -53072,11 +58204,37 @@ x-bte-kgs-operations: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' + aapp-CAUSES-anab-rev: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: object.umls + parameters: + fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Polypeptide + predicate: caused_by + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' orch-CAUSES-acab: - supportBatch: True useTemplating: True @@ -53097,6 +58255,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nsba-AFFECTS-patf-rev: @@ -53119,6 +58279,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' patf-AFFECTS-mobd: @@ -53141,6 +58303,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-MANIFESTATION_OF-mobd: @@ -53163,6 +58327,8 @@ x-bte-kgs-operations: semantic: Disease predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-AFFECTS-biof: @@ -53185,6 +58351,8 @@ x-bte-kgs-operations: semantic: Phenomenon predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-AFFECTS-biof-rev: @@ -53207,6 +58375,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-CAUSES-cgab_umls: @@ -53229,6 +58399,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-INTERACTS_WITH-lipd: @@ -53251,6 +58423,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' hops-COEXISTS_WITH-aapp-rev: @@ -53273,6 +58447,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' clnd-TREATS-neop: @@ -53293,8 +58469,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' elii-INTERACTS_WITH-irda-rev: @@ -53317,6 +58495,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-PRODUCES-horm_umls: @@ -53339,6 +58519,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' elii_umls-STIMULATES-gngm_ncbigene-rev: @@ -53361,6 +58543,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -53387,6 +58571,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-INHIBITS-carb: @@ -53409,6 +58595,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -53435,6 +58623,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -53461,6 +58651,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-DISRUPTS-sosy: @@ -53483,6 +58675,8 @@ x-bte-kgs-operations: semantic: PhenotypicFeature predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-DISRUPTS-sosy-rev: @@ -53505,6 +58699,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' fngs-LOCATION_OF-nusq: @@ -53527,6 +58723,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fngs-LOCATION_OF-nusq-rev: @@ -53549,6 +58747,8 @@ x-bte-kgs-operations: semantic: Fungus predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-AUGMENTS-moft-rev: @@ -53571,6 +58771,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -53597,6 +58799,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -53623,6 +58827,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-PREDISPOSES-patf_umls-rev: @@ -53643,8 +58849,10 @@ x-bte-kgs-operations: outputs: - id: NCBIGene semantic: Gene - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' orgf-OCCURS_IN-aggp: @@ -53667,6 +58875,8 @@ x-bte-kgs-operations: semantic: Cohort predicate: occurs_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orgf-OCCURS_IN-aggp-rev: @@ -53689,6 +58899,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bdsu-LOCATION_OF-lipd: @@ -53711,6 +58923,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' lbtr-COEXISTS_WITH-lbtr: @@ -53733,6 +58947,8 @@ x-bte-kgs-operations: semantic: Phenomenon predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' lbtr-COEXISTS_WITH-lbtr-rev: @@ -53755,6 +58971,8 @@ x-bte-kgs-operations: semantic: Phenomenon predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-INHIBITS-antb: @@ -53777,6 +58995,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -53803,6 +59023,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' celf_umls-AFFECTS-bacs_ncbigene-rev: @@ -53825,6 +59047,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' neop-PRODUCES-nsba: @@ -53847,6 +59071,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' eico-PART_OF-cell-rev: @@ -53869,6 +59095,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-AFFECTS-acab: @@ -53891,6 +59119,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' horm-DISRUPTS-moft-rev: @@ -53913,6 +59143,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PRODUCES-hops: @@ -53935,6 +59167,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-AUGMENTS-biof: @@ -53957,6 +59191,8 @@ x-bte-kgs-operations: semantic: Phenomenon predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -53983,6 +59219,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -54009,6 +59247,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -54035,6 +59275,8 @@ x-bte-kgs-operations: semantic: Protein predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celf-PRODUCES-enzy-rev: @@ -54057,6 +59299,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-INHIBITS-strd: @@ -54079,6 +59323,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -54105,6 +59351,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-PREDISPOSES-dsyn: @@ -54125,8 +59373,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-PREDISPOSES-dsyn-rev: @@ -54147,8 +59397,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: BiologicalEntity - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-ASSOCIATED_WITH-dsyn-rev: @@ -54171,6 +59423,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-AUGMENTS-sosy: @@ -54193,6 +59447,8 @@ x-bte-kgs-operations: semantic: PhenotypicFeature predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -54219,6 +59475,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -54245,6 +59503,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-LOCATION_OF-opco: @@ -54267,6 +59527,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-DISRUPTS-patf_umls: @@ -54289,6 +59551,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-DISRUPTS-patf_umls-rev: @@ -54311,6 +59575,8 @@ x-bte-kgs-operations: semantic: Gene predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' nsba-DISRUPTS-celf-rev: @@ -54333,6 +59599,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' antb-CAUSES-sosy-rev: @@ -54355,6 +59623,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-PREVENTS-patf_umls: @@ -54375,8 +59645,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PathologicalProcess - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-INTERACTS_WITH-gngm-rev: @@ -54399,6 +59671,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-AFFECTS-bpoc-rev: @@ -54421,6 +59695,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-TREATS-dsyn: @@ -54441,8 +59717,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PREDISPOSES-sosy: @@ -54463,8 +59741,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PhenotypicFeature - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PREDISPOSES-sosy-rev: @@ -54485,8 +59765,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Polypeptide - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-STIMULATES-inch_umls: @@ -54509,6 +59791,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -54533,8 +59817,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PathologicalProcess - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-DISRUPTS-inpo: @@ -54557,6 +59843,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' antb-PREDISPOSES-dsyn-rev: @@ -54577,8 +59865,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' mobd-PRECEDES-mobd-rev: @@ -54601,6 +59891,8 @@ x-bte-kgs-operations: semantic: Disease predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' biof-AFFECTS-neop: @@ -54623,6 +59915,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-DISRUPTS-moft: @@ -54645,6 +59939,8 @@ x-bte-kgs-operations: semantic: MolecularActivity predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-DISRUPTS-moft-rev: @@ -54667,6 +59963,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-INHIBITS-horm_umls: @@ -54689,6 +59987,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -54715,6 +60015,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-AUGMENTS-celc-rev: @@ -54737,6 +60039,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -54763,6 +60067,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' plnt-LOCATION_OF-phsu: @@ -54785,6 +60091,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nsba-AFFECTS-mobd-rev: @@ -54807,6 +60115,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-AUGMENTS-cell: @@ -54829,6 +60139,8 @@ x-bte-kgs-operations: semantic: Cell predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -54855,6 +60167,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -54881,6 +60195,8 @@ x-bte-kgs-operations: semantic: Gene predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' imft_umls-INTERACTS_WITH-gngm_ncbigene: @@ -54903,6 +60219,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' imft_umls-INTERACTS_WITH-gngm_ncbigene-rev: @@ -54925,6 +60243,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' food-CAUSES-neop: @@ -54947,6 +60267,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu_ncbigene-TREATS-virs_umls: @@ -54967,8 +60289,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Virus - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu_ncbigene-TREATS-virs_umls-rev: @@ -54989,8 +60313,10 @@ x-bte-kgs-operations: outputs: - id: NCBIGene semantic: Gene - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' aapp_ncbigene-AUGMENTS-fndg_umls: @@ -55013,6 +60339,8 @@ x-bte-kgs-operations: semantic: DiseaseOrPhenotypicFeature predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -55039,6 +60367,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -55065,6 +60395,8 @@ x-bte-kgs-operations: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' inch-AFFECTS-biof-rev: @@ -55087,6 +60419,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-PRODUCES-imft: @@ -55109,6 +60443,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PRODUCES-imft-rev: @@ -55131,6 +60467,8 @@ x-bte-kgs-operations: semantic: Gene predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-PRODUCES-inch_umls: @@ -55153,6 +60491,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-PRODUCES-inch_umls-rev: @@ -55175,6 +60515,8 @@ x-bte-kgs-operations: semantic: Gene predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' celc-LOCATION_OF-eico: @@ -55197,6 +60539,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-INTERACTS_WITH-elii_umls: @@ -55219,6 +60563,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-INTERACTS_WITH-horm: @@ -55241,6 +60587,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' lipd-AFFECTS-dsyn-rev: @@ -55263,6 +60611,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' elii-AFFECTS-biof-rev: @@ -55285,6 +60635,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-STIMULATES-antb: @@ -55307,6 +60659,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -55333,6 +60687,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-ASSOCIATED_WITH-comd: @@ -55355,6 +60711,8 @@ x-bte-kgs-operations: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-INTERACTS_WITH-bacs: @@ -55377,6 +60735,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-INTERACTS_WITH-bacs-rev: @@ -55399,6 +60759,8 @@ x-bte-kgs-operations: semantic: Protein predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd-COEXISTS_WITH-bacs-rev: @@ -55421,6 +60783,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nnon-DISRUPTS-neop-rev: @@ -55443,6 +60807,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nsba-AFFECTS-moft-rev: @@ -55465,6 +60831,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PART_OF-anst: @@ -55487,6 +60855,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fngs-LOCATION_OF-strd: @@ -55509,6 +60879,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' horm-CONVERTS_TO-horm: @@ -55531,6 +60903,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' horm-CONVERTS_TO-horm-rev: @@ -55553,6 +60927,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' irda-INTERACTS_WITH-inch: @@ -55575,6 +60951,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-STIMULATES-bacs: @@ -55597,6 +60975,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -55623,6 +61003,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -55649,6 +61031,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' hops_umls-INTERACTS_WITH-gngm_ncbigene-rev: @@ -55671,6 +61055,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-INTERACTS_WITH-rcpt: @@ -55693,6 +61079,8 @@ x-bte-kgs-operations: semantic: Protein predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-INTERACTS_WITH-rcpt-rev: @@ -55715,6 +61103,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-AFFECTS-sosy-rev: @@ -55737,6 +61127,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' sosy-COEXISTS_WITH-lbtr: @@ -55759,6 +61151,8 @@ x-bte-kgs-operations: semantic: Phenomenon predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' sosy-COEXISTS_WITH-lbtr-rev: @@ -55781,6 +61175,8 @@ x-bte-kgs-operations: semantic: PhenotypicFeature predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-AFFECTS-dsyn-rev: @@ -55803,6 +61199,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-PREDISPOSES-dsyn-rev: @@ -55823,8 +61221,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-DISRUPTS-tisu: @@ -55847,6 +61247,32 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' + sbst-CAUSES-comd: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: ChemicalEntity + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Disease + predicate: causes + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-COEXISTS_WITH-lipd_umls: @@ -55869,6 +61295,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' emst-PART_OF-neop-rev: @@ -55891,6 +61319,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' sosy-ASSOCIATED_WITH-bact: @@ -55913,6 +61343,8 @@ x-bte-kgs-operations: semantic: Bacterium predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' sosy-ASSOCIATED_WITH-bact-rev: @@ -55935,6 +61367,8 @@ x-bte-kgs-operations: semantic: PhenotypicFeature predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-INHIBITS-aapp-rev: @@ -55957,6 +61391,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -55983,6 +61419,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-TREATS-dsyn_umls-rev: @@ -56003,8 +61441,10 @@ x-bte-kgs-operations: outputs: - id: NCBIGene semantic: Gene - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' inch-AFFECTS-comd-rev: @@ -56027,6 +61467,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-DISRUPTS-biof: @@ -56049,6 +61491,8 @@ x-bte-kgs-operations: semantic: Phenomenon predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-DISRUPTS-biof-rev: @@ -56071,6 +61515,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-PART_OF-nusq_umls: @@ -56093,6 +61539,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-PART_OF-nusq_umls-rev: @@ -56115,6 +61563,8 @@ x-bte-kgs-operations: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' aapp-TREATS-patf: @@ -56135,8 +61585,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PathologicalProcess - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-TREATS-patf-rev: @@ -56157,8 +61609,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Polypeptide - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-INTERACTS_WITH-imft_umls: @@ -56181,6 +61635,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-INTERACTS_WITH-imft_umls-rev: @@ -56203,6 +61659,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' horm-PREDISPOSES-patf-rev: @@ -56223,8 +61681,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celf-PRODUCES-aapp: @@ -56247,6 +61707,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celf-PRODUCES-aapp-rev: @@ -56269,6 +61731,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' eico-DISRUPTS-celf-rev: @@ -56291,6 +61755,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-AUGMENTS-dsyn_umls: @@ -56313,6 +61779,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -56339,6 +61807,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' comd-MANIFESTATION_OF-inpo: @@ -56361,6 +61831,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' comd-MANIFESTATION_OF-inpo-rev: @@ -56383,6 +61855,8 @@ x-bte-kgs-operations: semantic: Disease predicate: has_manifestation source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-COMPLICATES-patf: @@ -56403,8 +61877,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PathologicalProcess - predicate: exacerbates + predicate: exacerbates_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-COMPLICATES-patf-rev: @@ -56425,10 +61901,36 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: is_exacerbated_by + predicate: condition_exacerbated_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' + anab-AFFECTS-orgf: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: PhysiologicalProcess + predicate: affects + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' anab-AFFECTS-orgf-rev: - supportBatch: True useTemplating: True @@ -56446,9 +61948,11 @@ x-bte-kgs-operations: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-DISRUPTS-patf-rev: @@ -56471,6 +61975,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd-STIMULATES-bacs-rev: @@ -56493,6 +61999,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -56519,6 +62027,8 @@ x-bte-kgs-operations: semantic: CellularComponent predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -56545,6 +62055,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -56571,6 +62083,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' eico-ASSOCIATED_WITH-patf-rev: @@ -56593,6 +62107,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' acab-LOCATION_OF-fngs: @@ -56615,6 +62131,8 @@ x-bte-kgs-operations: semantic: Fungus predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' acab-LOCATION_OF-fngs-rev: @@ -56637,6 +62155,8 @@ x-bte-kgs-operations: semantic: Disease predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bdsu-LOCATION_OF-carb: @@ -56659,6 +62179,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-STIMULATES-phsu_umls: @@ -56681,6 +62203,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -56707,6 +62231,8 @@ x-bte-kgs-operations: semantic: MolecularActivity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-AFFECTS-moft-rev: @@ -56729,6 +62255,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' irda-INTERACTS_WITH-nnon: @@ -56751,6 +62279,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-AFFECTS-fndg-rev: @@ -56773,6 +62303,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-AFFECTS-orgf: @@ -56795,6 +62327,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-STIMULATES-lipd: @@ -56817,6 +62351,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -56843,6 +62379,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-PART_OF-fngs-rev: @@ -56865,6 +62403,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-INTERACTS_WITH-inch: @@ -56887,6 +62427,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' moft_umls-AFFECTS-aapp_ncbigene: @@ -56909,6 +62451,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' orch-AUGMENTS-mobd: @@ -56931,6 +62475,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -56957,6 +62503,8 @@ x-bte-kgs-operations: semantic: DiagnosticAid predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-INTERACTS_WITH-irda_umls-rev: @@ -56979,6 +62527,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' elii-AFFECTS-inpo-rev: @@ -57001,6 +62551,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' acab-PART_OF-virs-rev: @@ -57023,6 +62575,8 @@ x-bte-kgs-operations: semantic: Disease predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-PREDISPOSES-patf-rev: @@ -57043,8 +62597,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-AFFECTS-inpo-rev: @@ -57067,6 +62623,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-AFFECTS-phsf: @@ -57089,6 +62647,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' plnt-LOCATION_OF-gngm: @@ -57111,6 +62671,8 @@ x-bte-kgs-operations: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' plnt-LOCATION_OF-gngm-rev: @@ -57133,6 +62695,8 @@ x-bte-kgs-operations: semantic: Plant predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-ASSOCIATED_WITH-sosy-rev: @@ -57155,6 +62719,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-INHIBITS-imft: @@ -57177,6 +62743,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -57203,6 +62771,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -57229,6 +62799,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' moft-PROCESS_OF-aggp: @@ -57251,6 +62823,8 @@ x-bte-kgs-operations: semantic: Cohort predicate: occurs_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' moft-PROCESS_OF-aggp-rev: @@ -57273,6 +62847,8 @@ x-bte-kgs-operations: semantic: MolecularActivity predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' sosy-PREDISPOSES-neop: @@ -57293,8 +62869,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' strd-AFFECTS-dsyn-rev: @@ -57317,6 +62895,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-INTERACTS_WITH-carb_umls: @@ -57339,6 +62919,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' elii-CAUSES-sosy-rev: @@ -57361,6 +62943,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' eehu-CAUSES-dsyn: @@ -57383,6 +62967,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' eehu-CAUSES-dsyn-rev: @@ -57405,6 +62991,8 @@ x-bte-kgs-operations: semantic: Phenomenon predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-DISRUPTS-patf: @@ -57427,6 +63015,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-DISRUPTS-patf-rev: @@ -57449,6 +63039,8 @@ x-bte-kgs-operations: semantic: Gene predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orgf-PRODUCES-enzy-rev: @@ -57471,6 +63063,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-AFFECTS-patf-rev: @@ -57493,6 +63087,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celc-LOCATION_OF-phsu: @@ -57515,6 +63111,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' opco-TREATS-dsyn-rev: @@ -57535,8 +63133,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-AUGMENTS-fndg-rev: @@ -57559,6 +63159,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -57585,6 +63187,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-PRODUCES-eico: @@ -57607,6 +63211,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-PRECEDES-imft: @@ -57629,6 +63235,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-PRECEDES-imft-rev: @@ -57651,6 +63259,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-CONVERTS_TO-elii: @@ -57673,6 +63283,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fndg-PREDISPOSES-ortf: @@ -57693,8 +63305,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PhysiologicalProcess - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fndg-PREDISPOSES-ortf-rev: @@ -57715,8 +63329,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-AFFECTS-inpo-rev: @@ -57739,6 +63355,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_umls-INHIBITS-aapp_ncbigene: @@ -57761,6 +63379,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: @@ -57785,8 +63405,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-PRODUCES-nsba: @@ -57809,6 +63431,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-INTERACTS_WITH-gngm: @@ -57831,6 +63455,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-INTERACTS_WITH-gngm-rev: @@ -57853,6 +63479,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft_umls-COEXISTS_WITH-gngm_ncbigene: @@ -57875,6 +63503,8 @@ x-bte-kgs-operations: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' imft_umls-COEXISTS_WITH-gngm_ncbigene-rev: @@ -57897,6 +63527,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-AUGMENTS-patf_umls: @@ -57919,6 +63551,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -57945,6 +63579,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -57971,6 +63607,8 @@ x-bte-kgs-operations: semantic: Disease predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-AFFECTS-celc-rev: @@ -57993,6 +63631,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-INTERACTS_WITH-rcpt-rev: @@ -58015,6 +63655,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-AFFECTS-tisu: @@ -58037,6 +63679,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' hops-INHIBITS-aapp-rev: @@ -58059,6 +63703,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -58085,6 +63731,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -58111,6 +63759,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' eico-STIMULATES-eico: @@ -58133,6 +63783,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -58159,6 +63811,8 @@ x-bte-kgs-operations: semantic: Phenomenon predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' food-AFFECTS-biof-rev: @@ -58181,6 +63835,8 @@ x-bte-kgs-operations: semantic: Food predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' elii-AFFECTS-celc-rev: @@ -58203,6 +63859,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' enzy-PART_OF-virs: @@ -58225,6 +63883,8 @@ x-bte-kgs-operations: semantic: Virus predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' enzy-PART_OF-virs-rev: @@ -58247,6 +63907,8 @@ x-bte-kgs-operations: semantic: Protein predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd-TREATS-patf-rev: @@ -58267,8 +63929,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-INTERACTS_WITH-gngm-rev: @@ -58291,6 +63955,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-same_as-orch: @@ -58313,6 +63979,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-same_as-orch-rev: @@ -58335,6 +64003,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-AFFECTS-cell_umls-rev: @@ -58357,6 +64027,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' irda-INTERACTS_WITH-phsu: @@ -58379,6 +64051,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AUGMENTS-comd: @@ -58401,6 +64075,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -58427,6 +64103,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-AFFECTS-cell-rev: @@ -58449,6 +64127,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lbtr-COEXISTS_WITH-sosy: @@ -58471,6 +64151,8 @@ x-bte-kgs-operations: semantic: PhenotypicFeature predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' lbtr-COEXISTS_WITH-sosy-rev: @@ -58493,6 +64175,8 @@ x-bte-kgs-operations: semantic: Phenomenon predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-STIMULATES-strd: @@ -58515,6 +64199,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -58541,6 +64227,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' eico-CAUSES-patf-rev: @@ -58563,6 +64251,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu_ncbigene-INHIBITS-ortf_umls: @@ -58585,6 +64275,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -58611,6 +64303,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -58637,6 +64331,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-AUGMENTS-mobd: @@ -58659,6 +64355,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -58685,6 +64383,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd-INHIBITS-bacs-rev: @@ -58707,6 +64407,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -58733,6 +64435,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -58759,6 +64463,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-DISRUPTS-patf_umls-rev: @@ -58781,6 +64487,8 @@ x-bte-kgs-operations: semantic: Gene predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' aapp-CAUSES-sosy: @@ -58803,30 +64511,10 @@ x-bte-kgs-operations: semantic: PhenotypicFeature predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' - aapp-CAUSES-sosy-rev: - - supportBatch: True - useTemplating: True - inputs: - - id: UMLS - semantic: PhenotypicFeature - requestBody: - body: - q: '{{ queryInputs }}' - scopes: object.umls - parameters: - fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name - size: 1000 - filter: predicate:CAUSES AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls - AND pmid_count:>3 - outputs: - - id: UMLS - semantic: Polypeptide - predicate: caused_by - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' patf-MANIFESTATION_OF-orgf: - supportBatch: True useTemplating: True @@ -58847,6 +64535,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-MANIFESTATION_OF-orgf-rev: @@ -58869,6 +64559,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: has_manifestation source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-AUGMENTS-patf_umls-rev: @@ -58891,6 +64583,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -58917,6 +64611,8 @@ x-bte-kgs-operations: semantic: Disease predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' emst-LOCATION_OF-nusq-rev: @@ -58939,6 +64635,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-INHIBITS-aapp-rev: @@ -58961,6 +64659,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -58987,6 +64687,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -59013,6 +64715,8 @@ x-bte-kgs-operations: semantic: Gene predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-CONVERTS_TO-gngm-rev: @@ -59035,6 +64739,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-INTERACTS_WITH-gngm-rev: @@ -59057,6 +64763,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu_umls-COEXISTS_WITH-gngm_ncbigene-rev: @@ -59079,6 +64787,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-CAUSES-sosy-rev: @@ -59101,6 +64811,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' tisu-LOCATION_OF-emod-rev: @@ -59123,8 +64835,34 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' + sbst-CAUSES-mobd: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: ChemicalEntity + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Disease + predicate: causes + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' bact-INTERACTS_WITH-fngs: - supportBatch: True useTemplating: True @@ -59145,6 +64883,8 @@ x-bte-kgs-operations: semantic: Fungus predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bact-INTERACTS_WITH-fngs-rev: @@ -59167,8 +64907,34 @@ x-bte-kgs-operations: semantic: Bacterium predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' + anab-OCCURS_IN-aggp: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:OCCURS_IN AND object.semantic_type_abbreviation:aggp AND _exists_:object.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Cohort + predicate: occurs_in + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' anab-OCCURS_IN-aggp-rev: - supportBatch: True useTemplating: True @@ -59186,9 +64952,11 @@ x-bte-kgs-operations: _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-AUGMENTS-fndg_umls-rev: @@ -59211,6 +64979,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -59237,6 +65007,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' rcpt_umls-INTERACTS_WITH-aapp_ncbigene-rev: @@ -59259,6 +65031,8 @@ x-bte-kgs-operations: semantic: Protein predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-PREVENTS-virs: @@ -59279,8 +65053,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Virus - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-PREVENTS-virs-rev: @@ -59301,8 +65077,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsf-AFFECTS-plnt: @@ -59325,6 +65103,8 @@ x-bte-kgs-operations: semantic: Plant predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsf-AFFECTS-plnt-rev: @@ -59347,6 +65127,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-AUGMENTS-phsf: @@ -59369,6 +65151,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -59395,6 +65179,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' blor-LOCATION_OF-emod-rev: @@ -59417,6 +65203,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bact_umls-INTERACTS_WITH-aapp_ncbigene: @@ -59439,6 +65227,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' bact_umls-INTERACTS_WITH-aapp_ncbigene-rev: @@ -59461,6 +65251,8 @@ x-bte-kgs-operations: semantic: Bacterium predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-same_as-aapp: @@ -59483,6 +65275,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-same_as-aapp-rev: @@ -59505,6 +65299,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd-ASSOCIATED_WITH-sosy-rev: @@ -59527,6 +65323,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-INTERACTS_WITH-elii: @@ -59549,6 +65347,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' neop-COMPLICATES-dsyn-rev: @@ -59569,8 +65369,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: is_exacerbated_by + predicate: condition_exacerbated_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' virs-CAUSES-ortf: @@ -59593,6 +65395,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' virs-CAUSES-ortf-rev: @@ -59615,6 +65419,8 @@ x-bte-kgs-operations: semantic: Virus predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-CAUSES-dsyn: @@ -59637,6 +65443,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-CAUSES-dsyn-rev: @@ -59659,6 +65467,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-CAUSES-celf-rev: @@ -59681,6 +65491,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-ASSOCIATED_WITH-neop: @@ -59703,6 +65515,8 @@ x-bte-kgs-operations: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-ASSOCIATED_WITH-neop-rev: @@ -59725,6 +65539,8 @@ x-bte-kgs-operations: semantic: Protein predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' eico-CONVERTS_TO-bacs-rev: @@ -59747,6 +65563,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dora-STIMULATES-topp: @@ -59769,6 +65587,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -59795,6 +65615,8 @@ x-bte-kgs-operations: semantic: Activity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -59821,6 +65643,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -59847,6 +65671,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AFFECTS-inpo: @@ -59869,6 +65695,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' virs-CAUSES-comd: @@ -59891,6 +65719,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-AFFECTS-acab_umls: @@ -59913,6 +65743,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' ortf-AFFECTS-biof-rev: @@ -59935,8 +65767,34 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' + sbst-CAUSES-neop: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: ChemicalEntity + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Disease + predicate: causes + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-INHIBITS-gngm: - supportBatch: True useTemplating: True @@ -59957,6 +65815,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -59983,6 +65843,8 @@ x-bte-kgs-operations: semantic: Protein predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -60007,8 +65869,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' neop-AFFECTS-biof-rev: @@ -60031,6 +65895,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celc-LOCATION_OF-nsba: @@ -60053,6 +65919,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celf-AFFECTS-aapp: @@ -60075,6 +65943,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celf-AFFECTS-aapp-rev: @@ -60097,6 +65967,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-DISRUPTS-ortf: @@ -60119,6 +65991,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-DISRUPTS-ortf-rev: @@ -60141,6 +66015,8 @@ x-bte-kgs-operations: semantic: Protein predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-STIMULATES-aapp-rev: @@ -60163,6 +66039,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -60189,6 +66067,8 @@ x-bte-kgs-operations: semantic: Disease predicate: diagnoses source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' sosy-DIAGNOSES-cgab-rev: @@ -60211,6 +66091,8 @@ x-bte-kgs-operations: semantic: PhenotypicFeature predicate: is_diagnosed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-INTERACTS_WITH-opco: @@ -60233,6 +66115,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-CONVERTS_TO-gngm_umls: @@ -60255,6 +66139,8 @@ x-bte-kgs-operations: semantic: Gene predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-CONVERTS_TO-gngm_umls-rev: @@ -60277,6 +66163,8 @@ x-bte-kgs-operations: semantic: Gene predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' aapp_ncbigene-DISRUPTS-bpoc_umls: @@ -60299,6 +66187,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-DISRUPTS-bpoc_umls-rev: @@ -60321,6 +66211,8 @@ x-bte-kgs-operations: semantic: Gene predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' imft_umls-INTERACTS_WITH-aapp_ncbigene: @@ -60343,6 +66235,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' dsyn-MANIFESTATION_OF-orgf: @@ -60365,6 +66259,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-MANIFESTATION_OF-orgf-rev: @@ -60387,6 +66283,8 @@ x-bte-kgs-operations: semantic: Disease predicate: has_manifestation source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-COEXISTS_WITH-phsu: @@ -60409,6 +66307,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' eico-AFFECTS-bpoc-rev: @@ -60431,6 +66331,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-DISRUPTS-orgf: @@ -60453,6 +66355,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' antb-AFFECTS-patf-rev: @@ -60475,6 +66379,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bact-LOCATION_OF-antb: @@ -60497,6 +66403,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-DISRUPTS-sosy-rev: @@ -60519,6 +66427,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-AFFECTS-biof-rev: @@ -60541,6 +66451,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bdsu-LOCATION_OF-strd: @@ -60563,6 +66475,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' irda-CAUSES-anab: @@ -60582,11 +66496,37 @@ x-bte-kgs-operations: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' + irda-CAUSES-anab-rev: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: object.umls + parameters: + fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:irda AND _exists_:subject.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: DiagnosticAid + predicate: caused_by + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-PART_OF-aapp_umls-rev: - supportBatch: True useTemplating: True @@ -60607,6 +66547,8 @@ x-bte-kgs-operations: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' diap_umls-USES-phsu_ncbigene: @@ -60629,6 +66571,8 @@ x-bte-kgs-operations: semantic: Gene predicate: has_input source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' diap_umls-USES-phsu_ncbigene-rev: @@ -60651,6 +66595,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: is_input_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' food-AFFECTS-comd: @@ -60673,6 +66619,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' enzy-DISRUPTS-ortf-rev: @@ -60695,6 +66643,8 @@ x-bte-kgs-operations: semantic: Protein predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' irda-INTERACTS_WITH-bodm: @@ -60717,6 +66667,8 @@ x-bte-kgs-operations: semantic: Device predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' irda-INTERACTS_WITH-bodm-rev: @@ -60739,6 +66691,8 @@ x-bte-kgs-operations: semantic: DiagnosticAid predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inpo-AFFECTS-lbtr: @@ -60761,6 +66715,8 @@ x-bte-kgs-operations: semantic: Phenomenon predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inpo-AFFECTS-lbtr-rev: @@ -60783,6 +66739,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-INHIBITS-eico: @@ -60805,6 +66763,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -60831,6 +66791,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-DISRUPTS-tisu-rev: @@ -60853,6 +66815,8 @@ x-bte-kgs-operations: semantic: Gene predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-AFFECTS-emod: @@ -60875,6 +66839,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AFFECTS-emod-rev: @@ -60897,6 +66863,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' opco-DISRUPTS-cell-rev: @@ -60919,6 +66887,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' fngs-INTERACTS_WITH-bact: @@ -60941,6 +66911,8 @@ x-bte-kgs-operations: semantic: Bacterium predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fngs-INTERACTS_WITH-bact-rev: @@ -60963,6 +66935,8 @@ x-bte-kgs-operations: semantic: Fungus predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-STIMULATES-orch: @@ -60985,6 +66959,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -61011,6 +66987,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' elii_umls-INTERACTS_WITH-aapp_ncbigene-rev: @@ -61033,6 +67011,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' antb-DISRUPTS-cell-rev: @@ -61055,6 +67035,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inpo-DISRUPTS-bpoc: @@ -61077,6 +67059,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inpo-DISRUPTS-bpoc-rev: @@ -61099,6 +67083,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm_ncbigene-TREATS-patf_umls: @@ -61119,8 +67105,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PathologicalProcess - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' horm_ncbigene-TREATS-patf_umls-rev: @@ -61141,8 +67129,10 @@ x-bte-kgs-operations: outputs: - id: NCBIGene semantic: Gene - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' carb-CONVERTS_TO-carb-rev: @@ -61165,6 +67155,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-AUGMENTS-patf: @@ -61187,6 +67179,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -61213,6 +67207,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -61237,8 +67233,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft_ncbigene-PREVENTS-dsyn_umls-rev: @@ -61259,8 +67257,10 @@ x-bte-kgs-operations: outputs: - id: NCBIGene semantic: Gene - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' vita-ASSOCIATED_WITH-patf-rev: @@ -61283,6 +67283,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-COEXISTS_WITH-hops: @@ -61305,6 +67307,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' eico-AUGMENTS-bpoc-rev: @@ -61327,6 +67331,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -61353,6 +67359,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inpo-DISRUPTS-ortf: @@ -61375,6 +67383,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-MANIFESTATION_OF-neop: @@ -61397,6 +67407,8 @@ x-bte-kgs-operations: semantic: Disease predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-PREDISPOSES-sosy: @@ -61417,8 +67429,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PhenotypicFeature - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-PREDISPOSES-sosy-rev: @@ -61439,8 +67453,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PathologicalProcess - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-INTERACTS_WITH-gngm: @@ -61463,6 +67479,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-INTERACTS_WITH-gngm-rev: @@ -61485,6 +67503,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-DISRUPTS-phsf_umls: @@ -61507,6 +67527,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' biof-AFFECTS-phsf: @@ -61529,6 +67551,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fndg-COMPLICATES-dsyn: @@ -61549,8 +67573,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: exacerbates + predicate: exacerbates_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fndg-COMPLICATES-dsyn-rev: @@ -61571,8 +67597,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - predicate: is_exacerbated_by + predicate: condition_exacerbated_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celf-PROCESS_OF-aggp-rev: @@ -61595,6 +67623,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-AUGMENTS-moft: @@ -61617,6 +67647,8 @@ x-bte-kgs-operations: semantic: MolecularActivity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -61643,6 +67675,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -61669,6 +67703,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-INTERACTS_WITH-imft-rev: @@ -61691,6 +67727,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' antb-INHIBITS-aapp-rev: @@ -61713,6 +67751,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -61739,6 +67779,8 @@ x-bte-kgs-operations: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' rcpt_umls-COEXISTS_WITH-gngm_ncbigene-rev: @@ -61761,6 +67803,8 @@ x-bte-kgs-operations: semantic: Protein predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-INTERACTS_WITH-orch: @@ -61783,6 +67827,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-AFFECTS-emst: @@ -61805,6 +67851,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-INTERACTS_WITH-antb: @@ -61827,6 +67875,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orgf-PRODUCES-aggp: @@ -61849,6 +67899,8 @@ x-bte-kgs-operations: semantic: Cohort predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orgf-PRODUCES-aggp-rev: @@ -61871,6 +67923,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-INTERACTS_WITH-imft_umls-rev: @@ -61893,6 +67947,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' inch-DISRUPTS-neop-rev: @@ -61915,6 +67971,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bodm-CAUSES-comd: @@ -61937,6 +67995,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nsba-DISRUPTS-cell-rev: @@ -61959,6 +68019,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bdsu-CAUSES-inpo: @@ -61981,6 +68043,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_umls-CONVERTS_TO-gngm_ncbigene: @@ -62003,6 +68067,8 @@ x-bte-kgs-operations: semantic: Gene predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' aapp_umls-CONVERTS_TO-gngm_ncbigene-rev: @@ -62025,6 +68091,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-DISRUPTS-celf: @@ -62047,6 +68115,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-DISRUPTS-ortf: @@ -62069,6 +68139,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AFFECTS-cell: @@ -62091,6 +68163,8 @@ x-bte-kgs-operations: semantic: Cell predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AFFECTS-cell-rev: @@ -62113,6 +68187,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-AUGMENTS-comd_umls: @@ -62135,6 +68211,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -62161,6 +68239,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' neop-PRODUCES-imft-rev: @@ -62183,6 +68263,8 @@ x-bte-kgs-operations: semantic: Disease predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' sosy-DIAGNOSES-anab: @@ -62202,11 +68284,37 @@ x-bte-kgs-operations: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: diagnoses source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' + sosy-DIAGNOSES-anab-rev: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: object.umls + parameters: + fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:DIAGNOSES AND subject.semantic_type_abbreviation:sosy AND + _exists_:subject.umls AND pmid_count:>3 + outputs: + - id: UMLS + semantic: PhenotypicFeature + predicate: is_diagnosed_by + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' food-ASSOCIATED_WITH-inpo: - supportBatch: True useTemplating: True @@ -62227,6 +68335,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' food-ASSOCIATED_WITH-inpo-rev: @@ -62249,6 +68359,8 @@ x-bte-kgs-operations: semantic: Food predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-AUGMENTS-bpoc-rev: @@ -62271,6 +68383,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -62297,6 +68411,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' sosy-MANIFESTATION_OF-patf: @@ -62319,6 +68435,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' sosy-MANIFESTATION_OF-patf-rev: @@ -62341,6 +68459,8 @@ x-bte-kgs-operations: semantic: PhenotypicFeature predicate: has_manifestation source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd-COEXISTS_WITH-aapp-rev: @@ -62363,6 +68483,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' biof-AFFECTS-bact: @@ -62385,6 +68507,8 @@ x-bte-kgs-operations: semantic: Bacterium predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' biof-AFFECTS-bact-rev: @@ -62407,6 +68531,8 @@ x-bte-kgs-operations: semantic: Phenomenon predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-COEXISTS_WITH-strd: @@ -62429,6 +68555,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PREDISPOSES-inpo: @@ -62449,8 +68577,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PathologicalProcess - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inch-PREDISPOSES-dsyn-rev: @@ -62471,8 +68601,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-AFFECTS-inpo_umls: @@ -62495,6 +68627,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsf-AFFECTS-biof-rev: @@ -62517,6 +68651,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-DISRUPTS-dsyn_umls: @@ -62539,6 +68675,8 @@ x-bte-kgs-operations: semantic: Disease predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-PRECEDES-mobd: @@ -62561,6 +68699,8 @@ x-bte-kgs-operations: semantic: Disease predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-AFFECTS-neop: @@ -62583,6 +68723,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-ADMINISTERED_TO-cell: @@ -62605,6 +68747,8 @@ x-bte-kgs-operations: semantic: Cell predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-ADMINISTERED_TO-cell-rev: @@ -62627,6 +68771,8 @@ x-bte-kgs-operations: semantic: Gene predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' tisu-LOCATION_OF-antb: @@ -62649,6 +68795,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-MANIFESTATION_OF-celf: @@ -62671,6 +68819,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' neop-PART_OF-aggp-rev: @@ -62693,6 +68843,8 @@ x-bte-kgs-operations: semantic: Disease predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' antb-AFFECTS-celc-rev: @@ -62715,6 +68867,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-INTERACTS_WITH-rcpt_umls: @@ -62737,6 +68891,8 @@ x-bte-kgs-operations: semantic: Protein predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-INTERACTS_WITH-rcpt_umls-rev: @@ -62759,6 +68915,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' aapp-CONVERTS_TO-elii: @@ -62781,6 +68939,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' comd-OCCURS_IN-neop: @@ -62803,6 +68963,8 @@ x-bte-kgs-operations: semantic: Disease predicate: occurs_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' comd-OCCURS_IN-neop-rev: @@ -62825,6 +68987,8 @@ x-bte-kgs-operations: semantic: Disease predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-PREVENTS-neop_umls: @@ -62845,8 +69009,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-PREVENTS-neop_umls-rev: @@ -62867,8 +69033,10 @@ x-bte-kgs-operations: outputs: - id: NCBIGene semantic: Gene - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' biof-PRODUCES-bacs: @@ -62891,6 +69059,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' biof-PRODUCES-bacs-rev: @@ -62913,6 +69083,8 @@ x-bte-kgs-operations: semantic: Phenomenon predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' anst-LOCATION_OF-orch-rev: @@ -62935,6 +69107,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd-PART_OF-cell-rev: @@ -62957,6 +69131,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-PREDISPOSES-patf-rev: @@ -62977,8 +69153,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_umls-PART_OF-aapp_ncbigene: @@ -63001,6 +69179,8 @@ x-bte-kgs-operations: semantic: Gene predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' aapp_umls-PART_OF-aapp_ncbigene-rev: @@ -63023,6 +69203,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' comd-AFFECTS-biof-rev: @@ -63045,6 +69227,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celc-PRODUCES-orch: @@ -63067,6 +69251,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-STIMULATES-imft: @@ -63089,6 +69275,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -63115,6 +69303,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -63141,6 +69331,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' irda-INTERACTS_WITH-lipd: @@ -63163,6 +69355,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-AFFECTS-bact: @@ -63185,6 +69379,8 @@ x-bte-kgs-operations: semantic: Bacterium predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-AFFECTS-bact-rev: @@ -63207,6 +69403,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-STIMULATES-imft: @@ -63229,6 +69427,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -63255,6 +69455,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -63281,6 +69483,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-AFFECTS-celf-rev: @@ -63303,6 +69507,8 @@ x-bte-kgs-operations: semantic: Protein predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-AFFECTS-fndg: @@ -63325,6 +69531,8 @@ x-bte-kgs-operations: semantic: DiseaseOrPhenotypicFeature predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AFFECTS-fndg-rev: @@ -63347,6 +69555,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-AFFECTS-biof-rev: @@ -63369,6 +69579,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-AUGMENTS-acab: @@ -63391,6 +69603,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -63417,6 +69631,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-PRODUCES-aapp-rev: @@ -63439,6 +69655,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' patf-AFFECTS-virs: @@ -63461,6 +69679,8 @@ x-bte-kgs-operations: semantic: Virus predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-AFFECTS-virs-rev: @@ -63483,6 +69703,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-COEXISTS_WITH-imft: @@ -63505,6 +69727,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-COEXISTS_WITH-imft-rev: @@ -63527,6 +69751,8 @@ x-bte-kgs-operations: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cgab-LOCATION_OF-virs: @@ -63549,6 +69775,8 @@ x-bte-kgs-operations: semantic: Virus predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cgab-LOCATION_OF-virs-rev: @@ -63571,6 +69799,8 @@ x-bte-kgs-operations: semantic: Disease predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' fngs_umls-LOCATION_OF-gngm_ncbigene: @@ -63593,6 +69823,8 @@ x-bte-kgs-operations: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' topp-USES-nnon: @@ -63615,6 +69847,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_input source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' carb-CAUSES-sosy-rev: @@ -63637,6 +69871,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' eico-AFFECTS-cell-rev: @@ -63659,6 +69895,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-DISRUPTS-neop: @@ -63681,6 +69919,8 @@ x-bte-kgs-operations: semantic: Disease predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-DISRUPTS-neop-rev: @@ -63703,6 +69943,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-COEXISTS_WITH-gngm-rev: @@ -63725,6 +69967,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' emod-COEXISTS_WITH-neop: @@ -63747,6 +69991,8 @@ x-bte-kgs-operations: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' emod-COEXISTS_WITH-neop-rev: @@ -63769,6 +70015,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' elii-ASSOCIATED_WITH-sosy-rev: @@ -63791,6 +70039,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' elii-COEXISTS_WITH-gngm-rev: @@ -63813,6 +70063,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' tisu-PART_OF-aggp-rev: @@ -63835,6 +70087,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' antb-DISRUPTS-celc-rev: @@ -63857,6 +70111,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-AFFECTS-celc-rev: @@ -63879,6 +70135,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' eico-PART_OF-celc-rev: @@ -63901,6 +70159,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-TREATS-sosy-rev: @@ -63921,8 +70181,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch_umls-INTERACTS_WITH-aapp_ncbigene-rev: @@ -63945,6 +70207,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bact-CAUSES-comd: @@ -63967,6 +70231,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fngs-LOCATION_OF-imft: @@ -63989,6 +70255,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fngs-LOCATION_OF-imft-rev: @@ -64011,6 +70279,8 @@ x-bte-kgs-operations: semantic: Fungus predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb_umls-INHIBITS-gngm_ncbigene-rev: @@ -64033,6 +70303,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -64059,6 +70331,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsf-PRODUCES-imft-rev: @@ -64081,6 +70355,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd-AFFECTS-patf-rev: @@ -64103,6 +70379,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-COEXISTS_WITH-gngm-rev: @@ -64125,6 +70403,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-AUGMENTS-moft: @@ -64147,6 +70427,8 @@ x-bte-kgs-operations: semantic: MolecularActivity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -64173,6 +70455,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -64199,6 +70483,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' vita-TREATS-dsyn-rev: @@ -64219,8 +70505,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bodm-INTERACTS_WITH-irda: @@ -64243,6 +70531,8 @@ x-bte-kgs-operations: semantic: DiagnosticAid predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bodm-INTERACTS_WITH-irda-rev: @@ -64265,6 +70555,8 @@ x-bte-kgs-operations: semantic: Device predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-AUGMENTS-fndg-rev: @@ -64287,6 +70579,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -64313,6 +70607,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-COEXISTS_WITH-eico: @@ -64335,6 +70631,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orgf-AFFECTS-fngs: @@ -64357,6 +70655,8 @@ x-bte-kgs-operations: semantic: Fungus predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orgf-AFFECTS-fngs-rev: @@ -64379,6 +70679,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-STIMULATES-gngm: @@ -64401,6 +70703,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -64427,6 +70731,8 @@ x-bte-kgs-operations: semantic: Protein predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -64450,11 +70756,37 @@ x-bte-kgs-operations: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease - predicate: treats + semantic: PhenotypicFeature + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' + aapp-TREATS-anab-rev: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: object.umls + parameters: + fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Polypeptide + predicate: subject_of_treatment_application_or_study_for_treatment_by + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' elii-AFFECTS-comd-rev: - supportBatch: True useTemplating: True @@ -64475,6 +70807,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-PART_OF-virs-rev: @@ -64497,6 +70831,8 @@ x-bte-kgs-operations: semantic: Protein predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-STIMULATES-aapp: @@ -64519,6 +70855,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -64545,6 +70883,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -64571,6 +70911,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -64597,6 +70939,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -64623,6 +70967,8 @@ x-bte-kgs-operations: semantic: Disease predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' anst-PART_OF-neop-rev: @@ -64645,6 +70991,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-CONVERTS_TO-bacs-rev: @@ -64667,6 +71015,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-AUGMENTS-comd-rev: @@ -64689,6 +71039,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -64715,6 +71067,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -64741,6 +71095,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -64767,6 +71123,8 @@ x-bte-kgs-operations: semantic: Cohort predicate: occurs_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' biof-PROCESS_OF-aggp-rev: @@ -64789,6 +71147,8 @@ x-bte-kgs-operations: semantic: Phenomenon predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd_umls-COEXISTS_WITH-gngm_ncbigene-rev: @@ -64811,6 +71171,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-STIMULATES-nsba_umls: @@ -64833,6 +71195,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -64859,6 +71223,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -64885,6 +71251,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -64911,6 +71279,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -64935,8 +71305,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt_umls-INTERACTS_WITH-gngm_ncbigene: @@ -64959,6 +71331,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' nsba-AUGMENTS-bpoc-rev: @@ -64981,6 +71355,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -65007,6 +71383,8 @@ x-bte-kgs-operations: semantic: Phenomenon predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-DISRUPTS-biof-rev: @@ -65029,6 +71407,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-COEXISTS_WITH-imft_umls: @@ -65051,6 +71431,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-COEXISTS_WITH-imft_umls-rev: @@ -65073,6 +71455,8 @@ x-bte-kgs-operations: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' dsyn-COMPLICATES-inpo: @@ -65093,8 +71477,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PathologicalProcess - predicate: exacerbates + predicate: exacerbates_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-COEXISTS_WITH-phsu: @@ -65117,6 +71503,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-AFFECTS-sosy_umls: @@ -65139,6 +71527,8 @@ x-bte-kgs-operations: semantic: PhenotypicFeature predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-AFFECTS-sosy_umls-rev: @@ -65161,6 +71551,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' clnd-TREATS-patf: @@ -65181,8 +71573,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PathologicalProcess - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' clnd-TREATS-patf-rev: @@ -65203,8 +71597,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Drug - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-PART_OF-emst: @@ -65227,6 +71623,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' strd-PREDISPOSES-dsyn-rev: @@ -65247,8 +71645,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-COEXISTS_WITH-nusq_umls: @@ -65271,6 +71671,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-COEXISTS_WITH-nusq_umls-rev: @@ -65293,6 +71695,8 @@ x-bte-kgs-operations: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' food-CAUSES-comd: @@ -65315,6 +71719,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' lipd-ASSOCIATED_WITH-sosy-rev: @@ -65337,8 +71743,34 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' + anab-COEXISTS_WITH-acab: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:acab AND + _exists_:object.umls AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Disease + predicate: coexists_with + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' imft-COEXISTS_WITH-gngm: - supportBatch: True useTemplating: True @@ -65359,6 +71791,8 @@ x-bte-kgs-operations: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-COEXISTS_WITH-gngm-rev: @@ -65381,6 +71815,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' sosy-DIAGNOSES-acab: @@ -65403,6 +71839,8 @@ x-bte-kgs-operations: semantic: Disease predicate: diagnoses source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-COEXISTS_WITH-rcpt: @@ -65425,6 +71863,8 @@ x-bte-kgs-operations: semantic: Protein predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-COEXISTS_WITH-rcpt-rev: @@ -65447,6 +71887,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' emod-COEXISTS_WITH-dsyn: @@ -65469,6 +71911,8 @@ x-bte-kgs-operations: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' eico-CAUSES-dsyn-rev: @@ -65491,6 +71935,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-COEXISTS_WITH-gngm-rev: @@ -65513,6 +71959,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orgf-AFFECTS-virs: @@ -65535,6 +71983,8 @@ x-bte-kgs-operations: semantic: Virus predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orgf-AFFECTS-virs-rev: @@ -65557,6 +72007,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-INHIBITS-bacs: @@ -65579,6 +72031,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -65605,6 +72059,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -65631,6 +72087,8 @@ x-bte-kgs-operations: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' dsyn-AFFECTS-fngs: @@ -65653,6 +72111,8 @@ x-bte-kgs-operations: semantic: Fungus predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-AFFECTS-fngs-rev: @@ -65675,6 +72135,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' elii_umls-INHIBITS-gngm_ncbigene-rev: @@ -65697,6 +72159,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -65723,6 +72187,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' eico-AFFECTS-patf-rev: @@ -65745,6 +72211,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-DISRUPTS-patf-rev: @@ -65767,6 +72235,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-INTERACTS_WITH-imft-rev: @@ -65789,6 +72259,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-DISRUPTS-neop-rev: @@ -65811,6 +72283,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc_umls-LOCATION_OF-bacs_ncbigene: @@ -65833,6 +72307,8 @@ x-bte-kgs-operations: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' gngm-PREDISPOSES-comd: @@ -65853,8 +72329,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nsba-STIMULATES-aapp-rev: @@ -65877,6 +72355,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -65903,6 +72383,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' neop-PRODUCES-tisu-rev: @@ -65925,6 +72407,8 @@ x-bte-kgs-operations: semantic: Disease predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-PREDISPOSES-mobd_umls: @@ -65945,8 +72429,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orgf-PRODUCES-bdsu: @@ -65969,6 +72455,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orgf-PRODUCES-bdsu-rev: @@ -65991,6 +72479,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' opco-AFFECTS-cell-rev: @@ -66013,6 +72503,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-COEXISTS_WITH-nusq_umls-rev: @@ -66035,6 +72527,8 @@ x-bte-kgs-operations: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' gngm-STIMULATES-hops: @@ -66057,6 +72551,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -66083,6 +72579,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' patf-AFFECTS-bact: @@ -66105,6 +72603,8 @@ x-bte-kgs-operations: semantic: Bacterium predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-AFFECTS-bact-rev: @@ -66127,6 +72627,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-COEXISTS_WITH-orch: @@ -66149,6 +72651,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-DISRUPTS-inpo-rev: @@ -66171,6 +72675,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' elii-PREDISPOSES-dsyn-rev: @@ -66191,8 +72697,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' food-CAUSES-mobd: @@ -66215,6 +72723,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' medd-CAUSES-anab: @@ -66234,11 +72744,37 @@ x-bte-kgs-operations: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' + medd-CAUSES-anab-rev: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: object.umls + parameters: + fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:medd AND _exists_:subject.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Device + predicate: caused_by + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' strd-PART_OF-fngs-rev: - supportBatch: True useTemplating: True @@ -66259,6 +72795,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-AUGMENTS-biof-rev: @@ -66281,6 +72819,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -66307,6 +72847,8 @@ x-bte-kgs-operations: semantic: Gene predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PRODUCES-gngm-rev: @@ -66329,6 +72871,8 @@ x-bte-kgs-operations: semantic: Gene predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' diap-USES-diap: @@ -66351,6 +72895,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: has_input source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' diap-USES-diap-rev: @@ -66373,6 +72919,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: is_input_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-AUGMENTS-comd-rev: @@ -66395,6 +72943,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -66421,6 +72971,8 @@ x-bte-kgs-operations: semantic: PhenotypicFeature predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AFFECTS-sosy-rev: @@ -66443,6 +72995,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' plnt_umls-LOCATION_OF-gngm_ncbigene: @@ -66465,6 +73019,8 @@ x-bte-kgs-operations: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' horm-DISRUPTS-cell-rev: @@ -66487,6 +73043,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-AUGMENTS-patf-rev: @@ -66509,6 +73067,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -66535,6 +73095,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-STIMULATES-elii: @@ -66557,6 +73119,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -66583,6 +73147,8 @@ x-bte-kgs-operations: semantic: Gene predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' gngm_ncbigene-INTERACTS_WITH-eico_umls: @@ -66605,6 +73171,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nsba-DISRUPTS-moft-rev: @@ -66627,6 +73195,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-COEXISTS_WITH-strd: @@ -66649,6 +73219,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' eehu-CAUSES-patf: @@ -66671,6 +73243,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' eehu-CAUSES-patf-rev: @@ -66693,6 +73267,8 @@ x-bte-kgs-operations: semantic: Phenomenon predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' emst-LOCATION_OF-bact-rev: @@ -66715,6 +73291,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-DISRUPTS-celc_umls: @@ -66737,6 +73315,8 @@ x-bte-kgs-operations: semantic: CellularComponent predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-DISRUPTS-celc_umls-rev: @@ -66759,6 +73339,8 @@ x-bte-kgs-operations: semantic: Gene predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' medd-CAUSES-acab: @@ -66781,6 +73363,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-COMPLICATES-neop: @@ -66801,8 +73385,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: exacerbates + predicate: exacerbates_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-AFFECTS-fngs: @@ -66825,6 +73411,8 @@ x-bte-kgs-operations: semantic: Fungus predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-AFFECTS-fngs-rev: @@ -66847,6 +73435,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' enzy-AFFECTS-celf-rev: @@ -66869,6 +73459,8 @@ x-bte-kgs-operations: semantic: Protein predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' patf-PRODUCES-bdsu: @@ -66891,6 +73483,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-PRODUCES-bdsu-rev: @@ -66913,6 +73507,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-ASSOCIATED_WITH-inpo: @@ -66935,6 +73531,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-INHIBITS-nsba_umls: @@ -66957,6 +73555,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -66983,6 +73583,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd_umls-INTERACTS_WITH-aapp_ncbigene-rev: @@ -67005,6 +73607,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' patf-PRECEDES-comd: @@ -67027,6 +73631,8 @@ x-bte-kgs-operations: semantic: Disease predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-STIMULATES-strd: @@ -67049,6 +73655,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -67075,6 +73683,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-DISRUPTS-sosy-rev: @@ -67097,6 +73707,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celf_umls-PRODUCES-bacs_ncbigene: @@ -67119,6 +73731,8 @@ x-bte-kgs-operations: semantic: Gene predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' celf_umls-PRODUCES-bacs_ncbigene-rev: @@ -67141,6 +73755,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PRODUCES-eico: @@ -67163,6 +73779,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-COEXISTS_WITH-imft_umls-rev: @@ -67185,6 +73803,8 @@ x-bte-kgs-operations: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' ortf-PRODUCES-imft-rev: @@ -67207,6 +73827,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nnon-AUGMENTS-neop-rev: @@ -67229,6 +73851,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -67255,6 +73879,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-COEXISTS_WITH-gngm: @@ -67277,6 +73903,8 @@ x-bte-kgs-operations: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-COEXISTS_WITH-gngm-rev: @@ -67299,6 +73927,8 @@ x-bte-kgs-operations: semantic: Protein predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-INTERACTS_WITH-gngm-rev: @@ -67321,6 +73951,32 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' + acab-COEXISTS_WITH-anab-rev: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: object.umls + parameters: + fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:acab + AND _exists_:subject.umls AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Disease + predicate: coexists_with + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-PRODUCES-aapp_ncbigene-rev: @@ -67343,6 +73999,8 @@ x-bte-kgs-operations: semantic: Gene predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' opco-DISRUPTS-orgf-rev: @@ -67365,6 +74023,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-DISRUPTS-comd_umls: @@ -67387,6 +74047,8 @@ x-bte-kgs-operations: semantic: Disease predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inch-PREDISPOSES-inpo-rev: @@ -67407,10 +74069,36 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' + anab-PART_OF-fngs: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:fngs AND _exists_:object.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Fungus + predicate: part_of + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' anab-PART_OF-fngs-rev: - supportBatch: True useTemplating: True @@ -67428,9 +74116,11 @@ x-bte-kgs-operations: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-DISRUPTS-dsyn: @@ -67453,6 +74143,8 @@ x-bte-kgs-operations: semantic: Disease predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inch-AUGMENTS-celc-rev: @@ -67475,6 +74167,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -67501,6 +74195,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -67527,6 +74223,8 @@ x-bte-kgs-operations: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' rcpt-PART_OF-tisu: @@ -67549,6 +74247,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-PRODUCES-lipd: @@ -67571,6 +74271,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-PRODUCES-horm: @@ -67593,6 +74295,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-AFFECTS-sosy_umls-rev: @@ -67615,6 +74319,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' bacs_ncbigene-PREVENTS-dsyn_umls-rev: @@ -67635,8 +74341,10 @@ x-bte-kgs-operations: outputs: - id: NCBIGene semantic: Gene - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' nsba-AUGMENTS-patf-rev: @@ -67659,6 +74367,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -67685,6 +74395,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-AFFECTS-acab: @@ -67707,6 +74419,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' antb-AUGMENTS-comd-rev: @@ -67729,6 +74443,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -67755,6 +74471,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -67781,6 +74499,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-INTERACTS_WITH-bodm-rev: @@ -67803,6 +74523,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu_ncbigene-TREATS-patf_umls-rev: @@ -67823,8 +74545,10 @@ x-bte-kgs-operations: outputs: - id: NCBIGene semantic: Gene - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' bdsu-CAUSES-comd: @@ -67847,6 +74571,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-CAUSES-acab_umls: @@ -67869,6 +74595,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' hops-DISRUPTS-cell-rev: @@ -67891,6 +74619,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-INTERACTS_WITH-orch: @@ -67913,6 +74643,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-ADMINISTERED_TO-cell_umls-rev: @@ -67935,6 +74667,8 @@ x-bte-kgs-operations: semantic: Gene predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' strd-DISRUPTS-orgf-rev: @@ -67957,6 +74691,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd_umls-STIMULATES-gngm_ncbigene-rev: @@ -67979,6 +74715,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -68005,6 +74743,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-CAUSES-inpo: @@ -68027,6 +74767,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nsba-INHIBITS-aapp-rev: @@ -68049,6 +74791,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -68075,6 +74819,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' comd-MANIFESTATION_OF-celf: @@ -68097,6 +74843,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' comd-MANIFESTATION_OF-celf-rev: @@ -68119,6 +74867,8 @@ x-bte-kgs-operations: semantic: Disease predicate: has_manifestation source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' comd-PRODUCES-imft-rev: @@ -68141,8 +74891,34 @@ x-bte-kgs-operations: semantic: Disease predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' + anab-AFFECTS-ortf: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:ortf AND _exists_:object.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: PhysiologicalProcess + predicate: affects + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-INTERACTS_WITH-carb: - supportBatch: True useTemplating: True @@ -68163,6 +74939,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' eico-CONVERTS_TO-eico: @@ -68185,6 +74963,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PRODUCES-strd: @@ -68207,6 +74987,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-PREDISPOSES-patf: @@ -68227,8 +75009,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PathologicalProcess - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-PREDISPOSES-patf-rev: @@ -68249,8 +75033,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: BiologicalEntity - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' tisu-PRODUCES-bdsu-rev: @@ -68273,6 +75059,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-ADMINISTERED_TO-aggp: @@ -68295,6 +75083,8 @@ x-bte-kgs-operations: semantic: Cohort predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-ADMINISTERED_TO-aggp-rev: @@ -68317,6 +75107,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-DISRUPTS-sosy-rev: @@ -68339,6 +75131,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-INTERACTS_WITH-strd_umls: @@ -68361,6 +75155,32 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' + anab-COEXISTS_WITH-mobd: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:mobd AND + _exists_:object.umls AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Disease + predicate: coexists_with + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-PRODUCES-bdsu_umls: @@ -68383,6 +75203,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-PRODUCES-bdsu_umls-rev: @@ -68405,6 +75227,8 @@ x-bte-kgs-operations: semantic: Gene predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' aapp-INHIBITS-strd: @@ -68427,6 +75251,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -68453,6 +75279,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -68479,6 +75307,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -68505,6 +75335,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-ASSOCIATED_WITH-inpo: @@ -68527,6 +75359,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-DISRUPTS-tisu_umls: @@ -68549,6 +75383,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-DISRUPTS-cell: @@ -68571,6 +75407,8 @@ x-bte-kgs-operations: semantic: Cell predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-DISRUPTS-cell-rev: @@ -68593,6 +75431,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-CONVERTS_TO-imft: @@ -68615,6 +75455,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-CONVERTS_TO-imft-rev: @@ -68637,6 +75479,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' fndg-COEXISTS_WITH-cgab: @@ -68659,6 +75503,8 @@ x-bte-kgs-operations: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' antb-AUGMENTS-ortf-rev: @@ -68681,6 +75527,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -68707,6 +75555,8 @@ x-bte-kgs-operations: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fngs-LOCATION_OF-gngm-rev: @@ -68729,6 +75579,8 @@ x-bte-kgs-operations: semantic: Fungus predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' eehu-CAUSES-inpo: @@ -68751,6 +75603,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nnon-AFFECTS-tisu-rev: @@ -68773,6 +75627,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-AFFECTS-bpoc: @@ -68795,6 +75651,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-AFFECTS-bpoc-rev: @@ -68817,6 +75675,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' neop-AFFECTS-bact-rev: @@ -68839,6 +75699,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-AUGMENTS-patf-rev: @@ -68861,6 +75723,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -68887,6 +75751,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-DISRUPTS-bpoc-rev: @@ -68909,6 +75775,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-DISRUPTS-neop-rev: @@ -68931,6 +75799,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' comd-PROCESS_OF-aggp-rev: @@ -68953,6 +75823,8 @@ x-bte-kgs-operations: semantic: Disease predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-same_as-bacs: @@ -68975,6 +75847,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-same_as-bacs-rev: @@ -68997,6 +75871,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bodm-INTERACTS_WITH-antb: @@ -69019,6 +75895,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' antb-INTERACTS_WITH-gngm-rev: @@ -69041,6 +75919,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsf-PRODUCES-enzy-rev: @@ -69063,6 +75943,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bact-LOCATION_OF-gngm: @@ -69085,6 +75967,8 @@ x-bte-kgs-operations: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bact-LOCATION_OF-gngm-rev: @@ -69107,6 +75991,8 @@ x-bte-kgs-operations: semantic: Bacterium predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-INHIBITS-aapp-rev: @@ -69129,6 +76015,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -69155,6 +76043,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: @@ -69181,6 +76071,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -69207,6 +76099,8 @@ x-bte-kgs-operations: semantic: PhenotypicFeature predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-ASSOCIATED_WITH-sosy-rev: @@ -69229,6 +76123,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-AFFECTS-biof-rev: @@ -69251,6 +76147,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-COEXISTS_WITH-elii: @@ -69273,6 +76171,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft_umls-COEXISTS_WITH-aapp_ncbigene: @@ -69295,6 +76195,8 @@ x-bte-kgs-operations: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' gngm_ncbigene-INTERACTS_WITH-rcpt_umls-rev: @@ -69317,6 +76219,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' comd-COEXISTS_WITH-sosy-rev: @@ -69339,6 +76243,8 @@ x-bte-kgs-operations: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' acab-LOCATION_OF-virs-rev: @@ -69361,6 +76267,8 @@ x-bte-kgs-operations: semantic: Disease predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-INTERACTS_WITH-gngm-rev: @@ -69383,6 +76291,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-AUGMENTS-neop-rev: @@ -69405,6 +76315,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -69431,6 +76343,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-PRECEDES-aapp: @@ -69453,6 +76367,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-PRECEDES-aapp-rev: @@ -69475,6 +76391,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-INHIBITS-aapp-rev: @@ -69497,6 +76415,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -69523,6 +76443,8 @@ x-bte-kgs-operations: semantic: MolecularActivity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-AFFECTS-moft-rev: @@ -69545,6 +76467,8 @@ x-bte-kgs-operations: semantic: Protein predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-PRECEDES-orch: @@ -69567,6 +76491,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-PRECEDES-orch-rev: @@ -69589,6 +76515,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' opco-INTERACTS_WITH-aapp-rev: @@ -69611,6 +76539,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell-PART_OF-aggp: @@ -69633,6 +76563,8 @@ x-bte-kgs-operations: semantic: Cohort predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-PART_OF-aggp-rev: @@ -69655,6 +76587,8 @@ x-bte-kgs-operations: semantic: Cell predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' biof-AFFECTS-biof: @@ -69677,6 +76611,8 @@ x-bte-kgs-operations: semantic: Phenomenon predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' biof-AFFECTS-biof-rev: @@ -69699,6 +76635,8 @@ x-bte-kgs-operations: semantic: Phenomenon predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-DISRUPTS-comd: @@ -69721,6 +76659,8 @@ x-bte-kgs-operations: semantic: Disease predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' irda-COEXISTS_WITH-inch: @@ -69743,6 +76683,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' irda-COEXISTS_WITH-inch-rev: @@ -69765,6 +76707,8 @@ x-bte-kgs-operations: semantic: DiagnosticAid predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-CONVERTS_TO-bacs_umls: @@ -69787,6 +76731,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-CONVERTS_TO-bacs_umls-rev: @@ -69809,6 +76755,8 @@ x-bte-kgs-operations: semantic: Gene predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' bdsu-CAUSES-acab: @@ -69831,6 +76779,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-CONVERTS_TO-nsba: @@ -69853,6 +76803,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' horm-AUGMENTS-patf-rev: @@ -69875,6 +76827,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -69901,6 +76855,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -69927,6 +76883,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -69953,6 +76911,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nnon-TREATS-virs-rev: @@ -69973,8 +76933,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' elii-PREDISPOSES-inpo-rev: @@ -69995,8 +76957,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' neop-MANIFESTATION_OF-orgf-rev: @@ -70019,6 +76983,8 @@ x-bte-kgs-operations: semantic: Disease predicate: has_manifestation source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' opco-AUGMENTS-bpoc-rev: @@ -70041,6 +77007,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -70067,6 +77035,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_input source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' sosy-COEXISTS_WITH-comd: @@ -70089,6 +77059,8 @@ x-bte-kgs-operations: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-ADMINISTERED_TO-aggp: @@ -70111,6 +77083,8 @@ x-bte-kgs-operations: semantic: Cohort predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-ADMINISTERED_TO-aggp-rev: @@ -70133,6 +77107,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-INHIBITS-imft: @@ -70155,6 +77131,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -70181,6 +77159,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -70207,6 +77187,8 @@ x-bte-kgs-operations: semantic: Cell predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inpo-DISRUPTS-cell-rev: @@ -70229,6 +77211,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-INTERACTS_WITH-gngm: @@ -70251,6 +77235,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-INTERACTS_WITH-gngm-rev: @@ -70273,6 +77259,8 @@ x-bte-kgs-operations: semantic: Protein predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-USES-imft: @@ -70295,6 +77283,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: has_input source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-USES-imft-rev: @@ -70317,6 +77307,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: is_input_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-INTERACTS_WITH-horm: @@ -70339,6 +77331,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' carb-AFFECTS-celc-rev: @@ -70361,6 +77355,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' food-PREDISPOSES-mobd: @@ -70381,8 +77377,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AUGMENTS-dsyn: @@ -70405,6 +77403,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -70431,6 +77431,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -70457,6 +77459,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -70483,6 +77487,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -70507,8 +77513,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nsba-AUGMENTS-sosy-rev: @@ -70531,6 +77539,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -70557,6 +77567,8 @@ x-bte-kgs-operations: semantic: Disease predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bodm-INTERACTS_WITH-nnon: @@ -70579,6 +77591,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' lipd-DISRUPTS-cell-rev: @@ -70601,6 +77615,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-DISRUPTS-mobd: @@ -70623,6 +77639,8 @@ x-bte-kgs-operations: semantic: Disease predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-COEXISTS_WITH-hops_umls: @@ -70645,6 +77663,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' carb-DISRUPTS-neop-rev: @@ -70667,6 +77687,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' opco-AFFECTS-neop-rev: @@ -70689,6 +77711,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-AUGMENTS-biof-rev: @@ -70711,6 +77735,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -70737,6 +77763,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-COEXISTS_WITH-nusq-rev: @@ -70759,6 +77787,8 @@ x-bte-kgs-operations: semantic: Protein predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-COEXISTS_WITH-imft-rev: @@ -70781,6 +77811,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' antb-DISRUPTS-patf-rev: @@ -70803,6 +77835,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm_ncbigene-TREATS-mobd_umls: @@ -70823,8 +77857,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-INHIBITS-enzy: @@ -70847,6 +77883,8 @@ x-bte-kgs-operations: semantic: Protein predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -70873,6 +77911,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -70899,6 +77939,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' antb-DISRUPTS-moft-rev: @@ -70921,6 +77963,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-INTERACTS_WITH-lipd: @@ -70943,6 +77987,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-CONVERTS_TO-lipd: @@ -70965,6 +78011,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inpo-DISRUPTS-phsf: @@ -70987,6 +78035,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' hops-CONVERTS_TO-orch-rev: @@ -71009,6 +78059,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orgf-PRODUCES-aapp-rev: @@ -71031,6 +78083,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nnon-DISRUPTS-cell-rev: @@ -71053,6 +78107,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-PREDISPOSES-comd_umls: @@ -71073,8 +78129,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AUGMENTS-cell: @@ -71097,6 +78155,8 @@ x-bte-kgs-operations: semantic: Cell predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -71123,6 +78183,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -71149,6 +78211,8 @@ x-bte-kgs-operations: semantic: Protein predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -71175,6 +78239,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -71201,6 +78267,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -71224,9 +78292,11 @@ x-bte-kgs-operations: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-PART_OF-anab-rev: @@ -71234,7 +78304,7 @@ x-bte-kgs-operations: useTemplating: True inputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature requestBody: body: q: '{{ queryInputs }}' @@ -71249,6 +78319,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' biof-AFFECTS-mobd: @@ -71271,6 +78343,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsf_umls-PRODUCES-bacs_ncbigene-rev: @@ -71293,6 +78367,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-CONVERTS_TO-inch: @@ -71315,6 +78391,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' eico_umls-INHIBITS-gngm_ncbigene-rev: @@ -71337,6 +78415,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -71361,8 +78441,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-AFFECTS-celc-rev: @@ -71385,6 +78467,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-COEXISTS_WITH-gngm-rev: @@ -71407,6 +78491,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PART_OF-aggp: @@ -71429,6 +78515,8 @@ x-bte-kgs-operations: semantic: Cohort predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PART_OF-aggp-rev: @@ -71451,6 +78539,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm_ncbigene-PREVENTS-dsyn_umls-rev: @@ -71471,8 +78561,10 @@ x-bte-kgs-operations: outputs: - id: NCBIGene semantic: Gene - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' orch-DISRUPTS-mobd: @@ -71495,6 +78587,8 @@ x-bte-kgs-operations: semantic: Disease predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-INHIBITS-phsu_umls: @@ -71517,6 +78611,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -71543,6 +78639,32 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_input source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' + anab-LOCATION_OF-bact: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:bact AND + _exists_:object.umls AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Bacterium + predicate: location_of + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' anab-LOCATION_OF-bact-rev: @@ -71562,9 +78684,11 @@ x-bte-kgs-operations: _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell-PRODUCES-carb: @@ -71587,6 +78711,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' diap_umls-USES-irda_ncbigene: @@ -71609,6 +78735,8 @@ x-bte-kgs-operations: semantic: Gene predicate: has_input source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' orch-COEXISTS_WITH-opco: @@ -71631,6 +78759,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bodm-INTERACTS_WITH-lipd: @@ -71653,6 +78783,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-CONVERTS_TO-carb: @@ -71675,6 +78807,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-PRODUCES-nnon: @@ -71697,6 +78831,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' hops-AFFECTS-biof-rev: @@ -71719,6 +78855,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bodm-INTERACTS_WITH-carb: @@ -71741,6 +78879,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orga-MANIFESTATION_OF-orgf: @@ -71763,6 +78903,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orga-MANIFESTATION_OF-orgf-rev: @@ -71785,6 +78927,8 @@ x-bte-kgs-operations: semantic: OrganismAttribute predicate: has_manifestation source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-INTERACTS_WITH-phsu: @@ -71807,6 +78951,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-CONVERTS_TO-bacs: @@ -71829,6 +78975,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-CONVERTS_TO-bacs-rev: @@ -71851,6 +78999,8 @@ x-bte-kgs-operations: semantic: Gene predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-ASSOCIATED_WITH-sosy-rev: @@ -71873,6 +79023,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PRODUCES-horm: @@ -71895,6 +79047,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' antb-INTERACTS_WITH-bodm-rev: @@ -71917,6 +79071,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-STIMULATES-carb_umls: @@ -71939,6 +79095,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -71965,6 +79123,8 @@ x-bte-kgs-operations: semantic: Gene predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' imft-COEXISTS_WITH-lipd: @@ -71987,6 +79147,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' horm-INTERACTS_WITH-rcpt-rev: @@ -72009,6 +79171,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-CONVERTS_TO-nusq: @@ -72031,6 +79195,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-CONVERTS_TO-nusq-rev: @@ -72053,6 +79219,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-INTERACTS_WITH-imft-rev: @@ -72075,6 +79243,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' virs-LOCATION_OF-carb: @@ -72097,6 +79267,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inch-CONVERTS_TO-inch: @@ -72119,6 +79291,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inch-CONVERTS_TO-inch-rev: @@ -72141,6 +79315,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-DISRUPTS-patf-rev: @@ -72163,6 +79339,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' opco-AUGMENTS-cell-rev: @@ -72185,6 +79363,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -72211,8 +79391,34 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' + anab-PART_OF-aggp: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:aggp AND _exists_:object.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Cohort + predicate: part_of + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' anab-PART_OF-aggp-rev: - supportBatch: True useTemplating: True @@ -72230,9 +79436,11 @@ x-bte-kgs-operations: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-STIMULATES-imft_umls: @@ -72255,6 +79463,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -72281,6 +79491,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -72307,6 +79519,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -72333,6 +79547,8 @@ x-bte-kgs-operations: semantic: Disease predicate: has_manifestation source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-AUGMENTS-acab_umls: @@ -72355,6 +79571,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -72381,6 +79599,8 @@ x-bte-kgs-operations: semantic: DiseaseOrPhenotypicFeature predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -72407,6 +79627,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -72433,6 +79655,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-INTERACTS_WITH-bodm-rev: @@ -72455,6 +79679,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-INHIBITS-gngm: @@ -72477,6 +79703,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -72503,6 +79731,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -72529,6 +79759,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -72555,6 +79787,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -72581,6 +79815,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' comd-MANIFESTATION_OF-comd: @@ -72603,6 +79839,8 @@ x-bte-kgs-operations: semantic: Disease predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' comd-MANIFESTATION_OF-comd-rev: @@ -72625,6 +79863,8 @@ x-bte-kgs-operations: semantic: Disease predicate: has_manifestation source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-STIMULATES-imft-rev: @@ -72647,6 +79887,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -72673,6 +79915,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: has_input source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-USES-topp-rev: @@ -72695,6 +79939,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: is_input_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-INTERACTS_WITH-enzy: @@ -72717,6 +79963,8 @@ x-bte-kgs-operations: semantic: Protein predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bact_umls-LOCATION_OF-gngm_ncbigene: @@ -72739,6 +79987,8 @@ x-bte-kgs-operations: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' elii-STIMULATES-aapp-rev: @@ -72761,6 +80011,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -72787,6 +80039,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsf_umls-ASSOCIATED_WITH-phsu_ncbigene: @@ -72809,6 +80063,8 @@ x-bte-kgs-operations: semantic: Gene predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' phsf_umls-ASSOCIATED_WITH-phsu_ncbigene-rev: @@ -72831,6 +80087,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-STIMULATES-strd_umls: @@ -72853,6 +80111,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -72879,6 +80139,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' irda-INTERACTS_WITH-hops: @@ -72901,6 +80163,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-ADMINISTERED_TO-aggp-rev: @@ -72923,6 +80187,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-CONVERTS_TO-gngm_umls-rev: @@ -72945,6 +80211,8 @@ x-bte-kgs-operations: semantic: Gene predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' lipd-INTERACTS_WITH-bodm-rev: @@ -72967,6 +80235,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-STIMULATES-hops_umls: @@ -72989,6 +80259,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -73015,6 +80287,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-STIMULATES-imft: @@ -73037,6 +80311,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -73063,6 +80339,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -73089,6 +80367,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -73115,6 +80395,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' elii-AFFECTS-sosy-rev: @@ -73137,6 +80419,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' eico-COEXISTS_WITH-aapp-rev: @@ -73159,6 +80443,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-PREDISPOSES-sosy: @@ -73179,8 +80465,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PhenotypicFeature - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-PREDISPOSES-sosy-rev: @@ -73201,8 +80489,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' patf-COEXISTS_WITH-emod-rev: @@ -73225,6 +80515,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-AUGMENTS-cell-rev: @@ -73247,6 +80539,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -73273,6 +80567,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PRODUCES-bdsu: @@ -73295,6 +80591,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PRODUCES-bdsu-rev: @@ -73317,6 +80615,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' mobd-MANIFESTATION_OF-mobd: @@ -73339,6 +80639,8 @@ x-bte-kgs-operations: semantic: Disease predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' food-CAUSES-acab: @@ -73361,6 +80663,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-AFFECTS-anst: @@ -73383,6 +80687,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-AFFECTS-anst-rev: @@ -73405,6 +80711,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-COEXISTS_WITH-imft-rev: @@ -73427,6 +80735,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-STIMULATES-phsu: @@ -73449,6 +80759,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -73475,6 +80787,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-INTERACTS_WITH-nusq_umls-rev: @@ -73497,6 +80811,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' phsf-AFFECTS-bact-rev: @@ -73519,6 +80835,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' enzy-INTERACTS_WITH-bacs-rev: @@ -73541,6 +80859,8 @@ x-bte-kgs-operations: semantic: Protein predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orgf_umls-PRODUCES-bacs_ncbigene-rev: @@ -73563,6 +80883,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' elii-CONVERTS_TO-bacs-rev: @@ -73585,6 +80907,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' neop-PRODUCES-gngm: @@ -73607,6 +80931,8 @@ x-bte-kgs-operations: semantic: Gene predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' neop-PRODUCES-gngm-rev: @@ -73629,6 +80955,8 @@ x-bte-kgs-operations: semantic: Disease predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celf_umls-PRODUCES-imft_ncbigene: @@ -73651,6 +80979,8 @@ x-bte-kgs-operations: semantic: Gene predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' nnon-AUGMENTS-biof-rev: @@ -73673,6 +81003,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -73699,6 +81031,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-CAUSES-neop: @@ -73721,6 +81055,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' opco-INTERACTS_WITH-bacs-rev: @@ -73743,6 +81079,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-CONVERTS_TO-hops: @@ -73765,6 +81103,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' lbtr-PREDISPOSES-neop: @@ -73785,8 +81125,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' medd-same_as-medd: @@ -73809,6 +81151,8 @@ x-bte-kgs-operations: semantic: Device predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' medd-same_as-medd-rev: @@ -73831,6 +81175,8 @@ x-bte-kgs-operations: semantic: Device predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orga-MANIFESTATION_OF-celf: @@ -73853,6 +81199,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' strd-PREVENTS-dsyn-rev: @@ -73873,8 +81221,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celf_umls-PRODUCES-enzy_ncbigene: @@ -73897,6 +81247,8 @@ x-bte-kgs-operations: semantic: Gene predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' bacs-INHIBITS-nusq: @@ -73919,6 +81271,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -73945,6 +81299,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -73971,6 +81327,8 @@ x-bte-kgs-operations: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-LOCATION_OF-irda: @@ -73993,6 +81351,8 @@ x-bte-kgs-operations: semantic: DiagnosticAid predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-LOCATION_OF-irda-rev: @@ -74015,6 +81375,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-PRODUCES-lipd_umls: @@ -74037,6 +81399,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' clnd-TREATS-inpo: @@ -74057,8 +81421,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PathologicalProcess - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-INTERACTS_WITH-rcpt: @@ -74081,6 +81447,8 @@ x-bte-kgs-operations: semantic: Protein predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-INTERACTS_WITH-rcpt-rev: @@ -74103,6 +81471,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-TREATS-sosy: @@ -74123,32 +81493,12 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PhenotypicFeature - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' - aapp-TREATS-sosy-rev: - - supportBatch: True - useTemplating: True - inputs: - - id: UMLS - semantic: PhenotypicFeature - requestBody: - body: - q: '{{ queryInputs }}' - scopes: object.umls - parameters: - fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name - size: 1000 - filter: predicate:TREATS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls - AND pmid_count:>3 - outputs: - - id: UMLS - semantic: Polypeptide - predicate: treated_by - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-CONVERTS_TO-aapp: - supportBatch: True useTemplating: True @@ -74169,6 +81519,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-CONVERTS_TO-aapp-rev: @@ -74191,6 +81543,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd-AFFECTS-cell-rev: @@ -74213,6 +81567,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nsba-AUGMENTS-mobd-rev: @@ -74235,6 +81591,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -74261,6 +81619,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -74287,6 +81647,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' lipd-INTERACTS_WITH-irda-rev: @@ -74309,6 +81671,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' irda-INTERACTS_WITH-antb: @@ -74331,6 +81695,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cgab-MANIFESTATION_OF-dsyn-rev: @@ -74353,6 +81719,8 @@ x-bte-kgs-operations: semantic: Disease predicate: has_manifestation source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celc-LOCATION_OF-horm: @@ -74375,6 +81743,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' horm-DISRUPTS-bpoc-rev: @@ -74397,6 +81767,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-INTERACTS_WITH-nusq_umls-rev: @@ -74419,6 +81791,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' antb-AFFECTS-gngm: @@ -74441,6 +81815,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' antb-AFFECTS-gngm-rev: @@ -74463,6 +81839,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' elii-INTERACTS_WITH-gngm-rev: @@ -74485,6 +81863,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb_umls-COEXISTS_WITH-gngm_ncbigene-rev: @@ -74507,6 +81887,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-PREVENTS-patf-rev: @@ -74527,8 +81909,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' antb-STIMULATES-aapp-rev: @@ -74551,6 +81935,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -74577,6 +81963,8 @@ x-bte-kgs-operations: semantic: Gene predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' enzy-PART_OF-tisu-rev: @@ -74599,6 +81987,8 @@ x-bte-kgs-operations: semantic: Protein predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-PRODUCES-phsu: @@ -74621,6 +82011,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsf-CAUSES-moft: @@ -74643,6 +82035,8 @@ x-bte-kgs-operations: semantic: MolecularActivity predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsf-CAUSES-moft-rev: @@ -74665,6 +82059,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' eico-PREDISPOSES-comd-rev: @@ -74685,8 +82081,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' mobd-AFFECTS-biof-rev: @@ -74709,6 +82107,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-COEXISTS_WITH-lipd: @@ -74731,6 +82131,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' irda-INTERACTS_WITH-carb: @@ -74753,6 +82155,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' strd_umls-INHIBITS-gngm_ncbigene-rev: @@ -74775,6 +82179,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -74801,6 +82207,8 @@ x-bte-kgs-operations: semantic: Protein predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-PRODUCES-enzy-rev: @@ -74823,6 +82231,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-INTERACTS_WITH-nnon: @@ -74845,6 +82255,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-STIMULATES-cell: @@ -74867,6 +82279,8 @@ x-bte-kgs-operations: semantic: Cell predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -74893,6 +82307,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -74919,6 +82335,8 @@ x-bte-kgs-operations: semantic: Gene predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' neop-PART_OF-bact-rev: @@ -74941,6 +82359,8 @@ x-bte-kgs-operations: semantic: Disease predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' eico_umls-INTERACTS_WITH-gngm_ncbigene-rev: @@ -74963,6 +82383,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celc-PRODUCES-lipd: @@ -74985,6 +82407,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' elii-TREATS-dsyn-rev: @@ -75005,8 +82429,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-STIMULATES-inch: @@ -75029,6 +82455,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -75053,8 +82481,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-INTERACTS_WITH-elii: @@ -75077,6 +82507,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nnon-COEXISTS_WITH-phsu-rev: @@ -75099,6 +82531,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' opco-DISRUPTS-neop-rev: @@ -75121,6 +82555,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-INTERACTS_WITH-gngm-rev: @@ -75143,6 +82579,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-PREDISPOSES-patf-rev: @@ -75163,8 +82601,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-TREATS-patf-rev: @@ -75185,8 +82625,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-AFFECTS-anab: @@ -75206,9 +82648,11 @@ x-bte-kgs-operations: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' lipd-INTERACTS_WITH-imft-rev: @@ -75231,6 +82675,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-PART_OF-aapp_ncbigene-rev: @@ -75253,6 +82699,8 @@ x-bte-kgs-operations: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' gngm_ncbigene-AFFECTS-fndg_umls-rev: @@ -75275,6 +82723,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' sosy-MANIFESTATION_OF-neop: @@ -75297,6 +82747,8 @@ x-bte-kgs-operations: semantic: Disease predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' sosy-MANIFESTATION_OF-neop-rev: @@ -75319,6 +82771,8 @@ x-bte-kgs-operations: semantic: PhenotypicFeature predicate: has_manifestation source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-PART_OF-anst_umls: @@ -75341,6 +82795,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-AUGMENTS-mobd_umls: @@ -75363,6 +82819,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -75389,6 +82847,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' ortf-PRODUCES-bdsu-rev: @@ -75411,6 +82871,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-COEXISTS_WITH-inch: @@ -75433,6 +82895,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' food-AFFECTS-mobd: @@ -75455,6 +82919,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-STIMULATES-moft-rev: @@ -75477,12 +82943,38 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased + anab-AFFECTS-celf: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: PhysiologicalProcess + predicate: affects + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-COEXISTS_WITH-eico: - supportBatch: True useTemplating: True @@ -75503,6 +82995,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bact-LOCATION_OF-rcpt: @@ -75525,6 +83019,8 @@ x-bte-kgs-operations: semantic: Protein predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bact-LOCATION_OF-rcpt-rev: @@ -75547,6 +83043,8 @@ x-bte-kgs-operations: semantic: Bacterium predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-AFFECTS-fndg-rev: @@ -75569,6 +83067,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-INHIBITS-imft-rev: @@ -75591,6 +83091,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -75617,6 +83119,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' acab-LOCATION_OF-emod-rev: @@ -75639,6 +83143,8 @@ x-bte-kgs-operations: semantic: Disease predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-INTERACTS_WITH-nsba: @@ -75661,6 +83167,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-PRODUCES-strd: @@ -75683,6 +83191,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' mobd-PRODUCES-bacs-rev: @@ -75705,6 +83215,8 @@ x-bte-kgs-operations: semantic: Disease predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' eehu-CAUSES-neop: @@ -75727,6 +83239,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AUGMENTS-moft: @@ -75749,6 +83263,8 @@ x-bte-kgs-operations: semantic: MolecularActivity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -75775,6 +83291,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -75801,6 +83319,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd-AUGMENTS-celc-rev: @@ -75823,6 +83343,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -75849,6 +83371,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -75875,6 +83399,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-USES-horm: @@ -75897,6 +83423,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_input source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PREVENTS-anab: @@ -75916,11 +83444,37 @@ x-bte-kgs-operations: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease - predicate: prevents + semantic: PhenotypicFeature + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' + aapp-PREVENTS-anab-rev: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: object.umls + parameters: + fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Polypeptide + predicate: condition_prevented_by + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' diap-USES-clnd-rev: - supportBatch: True useTemplating: True @@ -75941,6 +83495,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: is_input_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' neop-CAUSES-orgf-rev: @@ -75963,6 +83519,8 @@ x-bte-kgs-operations: semantic: Disease predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celc-LOCATION_OF-emod: @@ -75985,6 +83543,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-LOCATION_OF-emod-rev: @@ -76007,6 +83567,8 @@ x-bte-kgs-operations: semantic: CellularComponent predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-TREATS-inpo: @@ -76027,8 +83589,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PathologicalProcess - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' lipd-AFFECTS-biof-rev: @@ -76051,6 +83615,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-INTERACTS_WITH-irda-rev: @@ -76073,6 +83639,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-DISRUPTS-patf-rev: @@ -76095,6 +83663,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' anst_umls-LOCATION_OF-aapp_ncbigene-rev: @@ -76117,6 +83687,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-DISRUPTS-phsf: @@ -76139,6 +83711,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-PART_OF-aggp_umls: @@ -76161,6 +83735,8 @@ x-bte-kgs-operations: semantic: Cohort predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-PART_OF-aggp_umls-rev: @@ -76183,6 +83759,8 @@ x-bte-kgs-operations: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' imft-PART_OF-blor: @@ -76205,6 +83783,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-PART_OF-blor-rev: @@ -76227,6 +83807,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-AUGMENTS-comd-rev: @@ -76249,6 +83831,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -76275,6 +83859,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-INHIBITS-fndg: @@ -76297,6 +83883,8 @@ x-bte-kgs-operations: semantic: DiseaseOrPhenotypicFeature predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -76323,34 +83911,14 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - anab-COEXISTS_WITH-sosy-rev: - - supportBatch: True - useTemplating: True - inputs: - - id: UMLS - semantic: PhenotypicFeature - requestBody: - body: - q: '{{ queryInputs }}' - scopes: object.umls - parameters: - fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name - size: 1000 - filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:anab - AND _exists_:subject.umls AND pmid_count:>3 - outputs: - - id: UMLS - semantic: Disease - predicate: coexists_with - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' nsba-CONVERTS_TO-orch-rev: - supportBatch: True useTemplating: True @@ -76371,6 +83939,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nnon-CAUSES-sosy-rev: @@ -76393,6 +83963,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' elii-COEXISTS_WITH-imft-rev: @@ -76415,6 +83987,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' neop-AFFECTS-emod: @@ -76437,6 +84011,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' neop-AFFECTS-emod-rev: @@ -76459,6 +84035,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-DISRUPTS-bpoc: @@ -76481,6 +84059,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' opco-AUGMENTS-celf-rev: @@ -76503,6 +84083,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -76529,6 +84111,8 @@ x-bte-kgs-operations: semantic: Gene predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' elii-INTERACTS_WITH-rcpt-rev: @@ -76551,6 +84135,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bact-LOCATION_OF-enzy: @@ -76573,6 +84159,8 @@ x-bte-kgs-operations: semantic: Protein predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nnon-AUGMENTS-emst: @@ -76595,6 +84183,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -76621,6 +84211,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cgab-LOCATION_OF-emod-rev: @@ -76643,6 +84235,8 @@ x-bte-kgs-operations: semantic: Disease predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd-PREVENTS-patf-rev: @@ -76663,8 +84257,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm_ncbigene-DISRUPTS-ortf_umls: @@ -76687,6 +84283,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' horm_ncbigene-DISRUPTS-ortf_umls-rev: @@ -76709,6 +84307,8 @@ x-bte-kgs-operations: semantic: Gene predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' gngm-AUGMENTS-acab: @@ -76731,6 +84331,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -76757,6 +84359,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' antb-COEXISTS_WITH-gngm-rev: @@ -76779,6 +84383,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-PREVENTS-anab: @@ -76798,9 +84404,11 @@ x-bte-kgs-operations: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease - predicate: prevents + semantic: PhenotypicFeature + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-COEXISTS_WITH-imft-rev: @@ -76823,6 +84431,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-STIMULATES-imft_umls-rev: @@ -76845,6 +84455,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -76871,6 +84483,8 @@ x-bte-kgs-operations: semantic: Protein predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-COEXISTS_WITH-rcpt-rev: @@ -76893,6 +84507,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' anst-LOCATION_OF-virs: @@ -76915,6 +84531,8 @@ x-bte-kgs-operations: semantic: Virus predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' anst-LOCATION_OF-virs-rev: @@ -76937,6 +84555,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-ASSOCIATED_WITH-dsyn: @@ -76959,6 +84579,8 @@ x-bte-kgs-operations: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-ASSOCIATED_WITH-dsyn-rev: @@ -76981,6 +84603,8 @@ x-bte-kgs-operations: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-COEXISTS_WITH-carb: @@ -77003,6 +84627,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-DISRUPTS-patf: @@ -77025,6 +84651,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-DISRUPTS-patf-rev: @@ -77047,6 +84675,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' irda-COEXISTS_WITH-orch: @@ -77069,6 +84699,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' carb-COEXISTS_WITH-gngm-rev: @@ -77091,6 +84723,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-AUGMENTS-fndg-rev: @@ -77113,6 +84747,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -77139,6 +84775,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' eico-INHIBITS-aapp-rev: @@ -77161,12 +84799,38 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased + sbst-CAUSES-acab: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: ChemicalEntity + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Disease + predicate: causes + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' nnon-INHIBITS-gngm-rev: - supportBatch: True useTemplating: True @@ -77187,6 +84851,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -77211,8 +84877,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-STIMULATES-nusq: @@ -77235,6 +84903,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -77261,12 +84931,38 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased + anab-PART_OF-bact: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:bact AND _exists_:object.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Bacterium + predicate: part_of + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' anab-PART_OF-bact-rev: - supportBatch: True useTemplating: True @@ -77284,9 +84980,11 @@ x-bte-kgs-operations: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell-LOCATION_OF-antb: @@ -77309,6 +85007,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bact-LOCATION_OF-opco: @@ -77331,6 +85031,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' antb-PREDISPOSES-inpo-rev: @@ -77351,8 +85053,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' clnd-TREATS-mobd: @@ -77373,8 +85077,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' opco-AFFECTS-bpoc-rev: @@ -77397,6 +85103,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-COMPLICATES-cgab: @@ -77417,8 +85125,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: exacerbates + predicate: exacerbates_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-INHIBITS-ortf: @@ -77441,6 +85151,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -77467,6 +85179,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -77493,6 +85207,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inpo-DISRUPTS-tisu: @@ -77515,6 +85231,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' lipd-PART_OF-anst-rev: @@ -77537,6 +85255,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-COEXISTS_WITH-antb: @@ -77559,6 +85279,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' clnd-CAUSES-dsyn: @@ -77581,6 +85303,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' clnd-CAUSES-dsyn-rev: @@ -77603,6 +85327,8 @@ x-bte-kgs-operations: semantic: Drug predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-CONVERTS_TO-phsu: @@ -77625,6 +85351,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-DISRUPTS-celc: @@ -77647,6 +85375,8 @@ x-bte-kgs-operations: semantic: CellularComponent predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-DISRUPTS-celc-rev: @@ -77669,6 +85399,8 @@ x-bte-kgs-operations: semantic: Gene predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celf-AFFECTS-fngs-rev: @@ -77691,6 +85423,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-STIMULATES-eico: @@ -77713,6 +85447,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -77739,6 +85475,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celf-AFFECTS-virs-rev: @@ -77761,6 +85499,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-PREDISPOSES-sosy-rev: @@ -77781,8 +85521,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-AUGMENTS-biof: @@ -77805,6 +85547,8 @@ x-bte-kgs-operations: semantic: Phenomenon predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -77831,6 +85575,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -77857,6 +85603,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celc-PRODUCES-bdsu: @@ -77879,6 +85627,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-PRODUCES-bdsu-rev: @@ -77901,6 +85651,8 @@ x-bte-kgs-operations: semantic: CellularComponent predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-AFFECTS-anst: @@ -77923,6 +85675,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AFFECTS-anst-rev: @@ -77945,6 +85699,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' acab-OCCURS_IN-aggp-rev: @@ -77967,6 +85723,8 @@ x-bte-kgs-operations: semantic: Disease predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-CONVERTS_TO-phsu: @@ -77989,6 +85747,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' hops-DISRUPTS-celc-rev: @@ -78011,6 +85771,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bdsu_umls-LOCATION_OF-bacs_ncbigene: @@ -78033,6 +85795,8 @@ x-bte-kgs-operations: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' dsyn-COMPLICATES-anab: @@ -78052,11 +85816,37 @@ x-bte-kgs-operations: _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease - predicate: exacerbates + semantic: PhenotypicFeature + predicate: exacerbates_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' + dsyn-COMPLICATES-anab-rev: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: object.umls + parameters: + fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:COMPLICATES AND subject.semantic_type_abbreviation:dsyn AND + _exists_:subject.umls AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Disease + predicate: condition_exacerbated_by + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' hops-AUGMENTS-sosy-rev: - supportBatch: True useTemplating: True @@ -78077,6 +85867,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -78103,6 +85895,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' irda-INTERACTS_WITH-horm: @@ -78125,6 +85919,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-ASSOCIATED_WITH-mobd: @@ -78147,6 +85943,8 @@ x-bte-kgs-operations: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nnon-DISRUPTS-tisu-rev: @@ -78169,6 +85967,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' neop_umls-PRODUCES-gngm_ncbigene: @@ -78191,6 +85991,8 @@ x-bte-kgs-operations: semantic: Gene predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' nsba-INTERACTS_WITH-gngm-rev: @@ -78213,6 +86015,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs_ncbigene-DISRUPTS-ortf_umls-rev: @@ -78235,6 +86039,8 @@ x-bte-kgs-operations: semantic: Gene predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' orch-AFFECTS-cgab: @@ -78257,6 +86063,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' neop-PRODUCES-bdsu: @@ -78279,6 +86087,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' neop-PRODUCES-bdsu-rev: @@ -78301,6 +86111,8 @@ x-bte-kgs-operations: semantic: Disease predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cgab-LOCATION_OF-bact-rev: @@ -78323,6 +86135,8 @@ x-bte-kgs-operations: semantic: Disease predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-DISRUPTS-biof-rev: @@ -78345,6 +86159,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celf_umls-AFFECTS-aapp_ncbigene: @@ -78367,6 +86183,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' imft-AUGMENTS-dsyn: @@ -78389,6 +86207,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -78415,6 +86235,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -78441,6 +86263,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-STIMULATES-nusq: @@ -78463,6 +86287,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -78489,6 +86315,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -78515,6 +86343,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-AFFECTS-bpoc-rev: @@ -78537,6 +86367,8 @@ x-bte-kgs-operations: semantic: Protein predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-INHIBITS-lipd_umls: @@ -78559,6 +86391,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -78585,6 +86419,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' emst-LOCATION_OF-emod-rev: @@ -78607,6 +86443,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-INHIBITS-imft-rev: @@ -78629,6 +86467,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -78655,6 +86495,8 @@ x-bte-kgs-operations: semantic: Gene predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-CONVERTS_TO-gngm-rev: @@ -78677,6 +86519,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' medd-PREVENTS-mobd: @@ -78697,8 +86541,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-LOCATION_OF-imft: @@ -78721,6 +86567,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' virs-CAUSES-mobd: @@ -78743,6 +86591,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq_umls-INTERACTS_WITH-aapp_ncbigene: @@ -78765,6 +86615,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' nusq_umls-INTERACTS_WITH-aapp_ncbigene-rev: @@ -78787,6 +86639,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-CONVERTS_TO-gngm-rev: @@ -78809,6 +86663,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-TREATS-patf-rev: @@ -78829,8 +86685,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-same_as-aapp_ncbigene: @@ -78853,6 +86711,8 @@ x-bte-kgs-operations: semantic: Gene predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' aapp_ncbigene-same_as-aapp_ncbigene-rev: @@ -78875,6 +86735,8 @@ x-bte-kgs-operations: semantic: Gene predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' eico_umls-COEXISTS_WITH-gngm_ncbigene-rev: @@ -78897,6 +86759,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nnon-INTERACTS_WITH-bodm-rev: @@ -78919,6 +86783,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' enzy-INTERACTS_WITH-aapp-rev: @@ -78941,6 +86807,8 @@ x-bte-kgs-operations: semantic: Protein predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-LOCATION_OF-mobd: @@ -78963,6 +86831,8 @@ x-bte-kgs-operations: semantic: Disease predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' biof-AFFECTS-virs: @@ -78985,6 +86855,8 @@ x-bte-kgs-operations: semantic: Virus predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' biof-AFFECTS-virs-rev: @@ -79007,6 +86879,8 @@ x-bte-kgs-operations: semantic: Phenomenon predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' plnt-LOCATION_OF-opco: @@ -79029,6 +86903,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-AFFECTS-biof: @@ -79051,6 +86927,8 @@ x-bte-kgs-operations: semantic: Phenomenon predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-AFFECTS-biof-rev: @@ -79073,6 +86951,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' medd-TREATS-comd: @@ -79093,8 +86973,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-DISRUPTS-acab_umls: @@ -79117,6 +86999,8 @@ x-bte-kgs-operations: semantic: Disease predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inch-COEXISTS_WITH-rcpt-rev: @@ -79139,6 +87023,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-AFFECTS-orgf: @@ -79161,6 +87047,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-STIMULATES-eico_umls: @@ -79183,6 +87071,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -79209,6 +87099,8 @@ x-bte-kgs-operations: semantic: Fungus predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' biof-AFFECTS-fngs-rev: @@ -79231,6 +87123,8 @@ x-bte-kgs-operations: semantic: Phenomenon predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nsba-COEXISTS_WITH-gngm-rev: @@ -79253,6 +87147,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' acab-COEXISTS_WITH-emod-rev: @@ -79275,6 +87171,8 @@ x-bte-kgs-operations: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-DISRUPTS-sosy: @@ -79297,6 +87195,8 @@ x-bte-kgs-operations: semantic: PhenotypicFeature predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-DISRUPTS-sosy-rev: @@ -79319,6 +87219,8 @@ x-bte-kgs-operations: semantic: Gene predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' sosy-MANIFESTATION_OF-cgab: @@ -79341,6 +87243,8 @@ x-bte-kgs-operations: semantic: Disease predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' horm_ncbigene-TREATS-inpo_umls: @@ -79361,8 +87265,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PathologicalProcess - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' strd-AUGMENTS-fndg-rev: @@ -79385,6 +87291,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -79411,6 +87319,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-COEXISTS_WITH-orch: @@ -79433,6 +87343,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-CONVERTS_TO-gngm: @@ -79455,6 +87367,8 @@ x-bte-kgs-operations: semantic: Gene predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-CONVERTS_TO-gngm-rev: @@ -79477,6 +87391,8 @@ x-bte-kgs-operations: semantic: Gene predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-CONVERTS_TO-phsu-rev: @@ -79499,6 +87415,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cgab-AFFECTS-virs-rev: @@ -79521,6 +87439,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-ADMINISTERED_TO-emod: @@ -79543,6 +87463,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-ADMINISTERED_TO-emod-rev: @@ -79565,6 +87487,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-INTERACTS_WITH-opco: @@ -79587,6 +87511,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-PRODUCES-rcpt: @@ -79609,6 +87535,8 @@ x-bte-kgs-operations: semantic: Protein predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-PRODUCES-rcpt-rev: @@ -79631,6 +87559,8 @@ x-bte-kgs-operations: semantic: Cell predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-ASSOCIATED_WITH-sosy-rev: @@ -79653,6 +87583,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bodm-CAUSES-neop: @@ -79675,6 +87607,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' elii-INHIBITS-aapp-rev: @@ -79697,6 +87631,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -79723,6 +87659,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' eico-DISRUPTS-cell-rev: @@ -79745,6 +87683,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-AFFECTS-biof: @@ -79767,6 +87707,8 @@ x-bte-kgs-operations: semantic: Phenomenon predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AFFECTS-biof-rev: @@ -79789,6 +87731,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt_umls-STIMULATES-gngm_ncbigene: @@ -79811,6 +87755,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: @@ -79837,6 +87783,8 @@ x-bte-kgs-operations: semantic: Protein predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -79863,6 +87811,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-PRODUCES-bacs-rev: @@ -79885,6 +87835,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-INTERACTS_WITH-bodm_umls: @@ -79907,6 +87859,8 @@ x-bte-kgs-operations: semantic: Device predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-INTERACTS_WITH-bodm_umls-rev: @@ -79929,6 +87883,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' emod-COEXISTS_WITH-patf: @@ -79951,6 +87907,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' emod-COEXISTS_WITH-patf-rev: @@ -79973,6 +87931,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-AFFECTS-fndg-rev: @@ -79995,6 +87955,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PREVENTS-comd: @@ -80015,8 +87977,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-LOCATION_OF-enzy: @@ -80039,6 +88003,8 @@ x-bte-kgs-operations: semantic: Protein predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-LOCATION_OF-enzy-rev: @@ -80061,6 +88027,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-TREATS-virs: @@ -80081,8 +88049,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Virus - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-TREATS-virs-rev: @@ -80103,8 +88073,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Polypeptide - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-DISRUPTS-acab: @@ -80127,6 +88099,8 @@ x-bte-kgs-operations: semantic: Disease predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' horm-COEXISTS_WITH-imft-rev: @@ -80149,6 +88123,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsf-AFFECTS-virs-rev: @@ -80171,6 +88147,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' biof-AFFECTS-comd: @@ -80193,6 +88171,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' horm_ncbigene-ASSOCIATED_WITH-dsyn_umls-rev: @@ -80215,6 +88195,8 @@ x-bte-kgs-operations: semantic: Gene predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' opco-AFFECTS-inpo-rev: @@ -80237,6 +88219,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-DISRUPTS-bpoc-rev: @@ -80259,6 +88243,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' virs-INTERACTS_WITH-fngs: @@ -80281,6 +88267,8 @@ x-bte-kgs-operations: semantic: Fungus predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' virs-INTERACTS_WITH-fngs-rev: @@ -80303,6 +88291,8 @@ x-bte-kgs-operations: semantic: Virus predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' blor-LOCATION_OF-sosy-rev: @@ -80325,6 +88315,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' elii-DISRUPTS-inpo-rev: @@ -80347,6 +88339,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' blor-LOCATION_OF-patf: @@ -80369,6 +88363,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' irda-CAUSES-acab: @@ -80391,6 +88387,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' clnd-PREVENTS-dsyn: @@ -80411,8 +88409,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' clnd-PREVENTS-dsyn-rev: @@ -80433,8 +88433,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Drug - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu_ncbigene-STIMULATES-gngm_umls-rev: @@ -80457,6 +88459,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -80483,6 +88487,8 @@ x-bte-kgs-operations: semantic: DiagnosticAid predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bdsu-LOCATION_OF-irda-rev: @@ -80505,6 +88511,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-INHIBITS-phsu: @@ -80527,6 +88535,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -80553,6 +88563,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' eico-TREATS-dsyn-rev: @@ -80573,8 +88585,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bsoj-LOCATION_OF-emod-rev: @@ -80597,6 +88611,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nnon-INTERACTS_WITH-rcpt-rev: @@ -80619,6 +88635,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-STIMULATES-antb_umls: @@ -80641,6 +88659,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -80667,6 +88687,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nnon-INTERACTS_WITH-imft-rev: @@ -80689,6 +88711,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-INHIBITS-rcpt: @@ -80711,6 +88735,8 @@ x-bte-kgs-operations: semantic: Protein predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -80737,6 +88763,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -80763,6 +88791,8 @@ x-bte-kgs-operations: semantic: Disease predicate: has_manifestation source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-AUGMENTS-inpo: @@ -80785,6 +88815,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -80811,6 +88843,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-AFFECTS-bpoc: @@ -80833,6 +88867,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-AFFECTS-bpoc-rev: @@ -80855,6 +88891,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-USES-hops: @@ -80877,6 +88915,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_input source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' medd-USES-orch: @@ -80899,6 +88939,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_input source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' biof-PRODUCES-enzy: @@ -80921,6 +88963,8 @@ x-bte-kgs-operations: semantic: Protein predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' biof-PRODUCES-enzy-rev: @@ -80943,6 +88987,8 @@ x-bte-kgs-operations: semantic: Phenomenon predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-STIMULATES-cell: @@ -80965,6 +89011,8 @@ x-bte-kgs-operations: semantic: Cell predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -80991,6 +89039,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -81017,6 +89067,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -81043,6 +89095,8 @@ x-bte-kgs-operations: semantic: Protein predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' irda-INTERACTS_WITH-rcpt-rev: @@ -81065,6 +89119,8 @@ x-bte-kgs-operations: semantic: DiagnosticAid predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' eico-AFFECTS-dsyn-rev: @@ -81087,6 +89143,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-TREATS-virs-rev: @@ -81107,8 +89165,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-INTERACTS_WITH-nnon: @@ -81131,6 +89191,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nsba-INTERACTS_WITH-rcpt-rev: @@ -81153,6 +89215,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-INTERACTS_WITH-irda: @@ -81175,6 +89239,8 @@ x-bte-kgs-operations: semantic: DiagnosticAid predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-INTERACTS_WITH-irda-rev: @@ -81197,6 +89263,8 @@ x-bte-kgs-operations: semantic: Protein predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-AUGMENTS-cell_umls: @@ -81219,6 +89287,8 @@ x-bte-kgs-operations: semantic: Cell predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -81245,6 +89315,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -81271,6 +89343,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -81297,6 +89371,8 @@ x-bte-kgs-operations: semantic: Disease predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-CONVERTS_TO-gngm-rev: @@ -81319,6 +89395,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' opco-CAUSES-sosy-rev: @@ -81341,6 +89419,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cgab-PART_OF-bact-rev: @@ -81363,6 +89443,8 @@ x-bte-kgs-operations: semantic: Disease predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-TREATS-acab: @@ -81383,8 +89465,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' emod-PRODUCES-imft: @@ -81407,6 +89491,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' emod-PRODUCES-imft-rev: @@ -81429,6 +89515,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' mobd-AFFECTS-virs-rev: @@ -81451,6 +89539,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' neop-PART_OF-fngs-rev: @@ -81473,6 +89563,8 @@ x-bte-kgs-operations: semantic: Disease predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' sosy-MANIFESTATION_OF-phsf: @@ -81495,6 +89587,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' sosy-MANIFESTATION_OF-phsf-rev: @@ -81517,6 +89611,8 @@ x-bte-kgs-operations: semantic: PhenotypicFeature predicate: has_manifestation source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nsba-DISRUPTS-sosy-rev: @@ -81539,6 +89635,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-CONVERTS_TO-imft: @@ -81561,6 +89659,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-CONVERTS_TO-imft-rev: @@ -81583,6 +89683,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-PART_OF-anst: @@ -81605,6 +89707,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' carb-DISRUPTS-celc-rev: @@ -81627,6 +89731,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inpo-COMPLICATES-dsyn-rev: @@ -81647,8 +89753,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PathologicalProcess - predicate: is_exacerbated_by + predicate: condition_exacerbated_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd-AFFECTS-sosy-rev: @@ -81671,6 +89779,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-PART_OF-fngs-rev: @@ -81693,6 +89803,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' antb-AUGMENTS-inpo-rev: @@ -81715,6 +89827,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -81741,6 +89855,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -81767,6 +89883,8 @@ x-bte-kgs-operations: semantic: PhenotypicFeature predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-DISRUPTS-sosy_umls-rev: @@ -81789,8 +89907,34 @@ x-bte-kgs-operations: semantic: Gene predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' + anab-LOCATION_OF-fngs: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:fngs AND + _exists_:object.umls AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Fungus + predicate: location_of + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' anab-LOCATION_OF-fngs-rev: - supportBatch: True useTemplating: True @@ -81808,9 +89952,11 @@ x-bte-kgs-operations: _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-CONVERTS_TO-imft: @@ -81833,6 +89979,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-CONVERTS_TO-imft-rev: @@ -81855,6 +90003,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-PRODUCES-eico_umls: @@ -81877,6 +90027,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' carb-same_as-carb: @@ -81899,6 +90051,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' carb-same_as-carb-rev: @@ -81921,6 +90075,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-INTERACTS_WITH-rcpt-rev: @@ -81943,6 +90099,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' opco-STIMULATES-gngm-rev: @@ -81965,6 +90123,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -81991,6 +90151,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -82015,8 +90177,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: BiologicalEntity - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-PREVENTS-emod-rev: @@ -82037,8 +90201,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Procedure - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-COEXISTS_WITH-rcpt-rev: @@ -82061,6 +90227,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' irda-CAUSES-mobd: @@ -82083,6 +90251,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-STIMULATES-enzy: @@ -82105,6 +90275,8 @@ x-bte-kgs-operations: semantic: Protein predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -82131,6 +90303,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -82157,6 +90331,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -82183,6 +90359,8 @@ x-bte-kgs-operations: semantic: Cell predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-INTERACTS_WITH-cell-rev: @@ -82205,6 +90383,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-PART_OF-aggp: @@ -82227,6 +90407,8 @@ x-bte-kgs-operations: semantic: Cohort predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-PART_OF-aggp-rev: @@ -82249,6 +90431,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-INHIBITS-aapp: @@ -82271,6 +90455,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -82297,6 +90483,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -82323,6 +90511,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fngs-LOCATION_OF-horm: @@ -82345,6 +90535,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' irda-INTERACTS_WITH-nsba: @@ -82367,6 +90559,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf_umls-PRODUCES-bacs_ncbigene: @@ -82389,6 +90583,8 @@ x-bte-kgs-operations: semantic: Gene predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' patf_umls-PRODUCES-bacs_ncbigene-rev: @@ -82411,6 +90607,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-COEXISTS_WITH-imft-rev: @@ -82433,6 +90631,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-PRODUCES-inch: @@ -82455,6 +90655,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-CAUSES-comd: @@ -82477,6 +90679,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf_umls-PRODUCES-horm_ncbigene: @@ -82499,6 +90703,8 @@ x-bte-kgs-operations: semantic: Gene predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' nsba-PREDISPOSES-mobd-rev: @@ -82519,8 +90725,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-INHIBITS-elii_umls: @@ -82543,6 +90751,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -82569,6 +90779,8 @@ x-bte-kgs-operations: semantic: Cohort predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PART_OF-aggp-rev: @@ -82591,6 +90803,8 @@ x-bte-kgs-operations: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-PREVENTS-neop: @@ -82611,8 +90825,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' emod-PRODUCES-bacs: @@ -82635,6 +90851,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' emod-PRODUCES-bacs-rev: @@ -82657,6 +90875,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-INTERACTS_WITH-carb: @@ -82679,6 +90899,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' opco-DISRUPTS-patf-rev: @@ -82701,6 +90923,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-INHIBITS-carb_umls: @@ -82723,6 +90947,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -82749,6 +90975,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc_umls-LOCATION_OF-horm_ncbigene: @@ -82771,6 +90999,8 @@ x-bte-kgs-operations: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' bodm_umls-INTERACTS_WITH-aapp_ncbigene: @@ -82793,6 +91023,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' bodm_umls-INTERACTS_WITH-aapp_ncbigene-rev: @@ -82815,6 +91047,8 @@ x-bte-kgs-operations: semantic: Device predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd-DISRUPTS-moft-rev: @@ -82837,6 +91071,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bodm-INTERACTS_WITH-hops: @@ -82859,6 +91095,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-COEXISTS_WITH-antb_umls: @@ -82881,6 +91119,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-PRODUCES-phsu: @@ -82903,6 +91143,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-PRODUCES-carb: @@ -82925,6 +91167,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-ASSOCIATED_WITH-sosy: @@ -82947,6 +91191,8 @@ x-bte-kgs-operations: semantic: PhenotypicFeature predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-ASSOCIATED_WITH-sosy-rev: @@ -82969,6 +91215,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-AUGMENTS-patf-rev: @@ -82991,6 +91239,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -83017,6 +91267,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-DISRUPTS-dsyn: @@ -83039,6 +91291,8 @@ x-bte-kgs-operations: semantic: Disease predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-PART_OF-anst: @@ -83061,6 +91315,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' comd-AFFECTS-bact-rev: @@ -83083,6 +91339,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' elii-DISRUPTS-celc-rev: @@ -83105,6 +91363,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bdsu-CAUSES-neop: @@ -83127,6 +91387,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-COMPLICATES-acab: @@ -83147,10 +91409,36 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: exacerbates + predicate: exacerbates_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' + strd-CAUSES-anab-rev: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: object.umls + parameters: + fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: SmallMolecule + predicate: caused_by + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' cgab-CAUSES-patf-rev: - supportBatch: True useTemplating: True @@ -83171,6 +91459,8 @@ x-bte-kgs-operations: semantic: Disease predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-AUGMENTS-bpoc-rev: @@ -83193,6 +91483,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -83217,8 +91509,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-STIMULATES-imft-rev: @@ -83241,6 +91535,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -83267,6 +91563,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' irda-INTERACTS_WITH-imft: @@ -83289,6 +91587,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' irda-INTERACTS_WITH-imft-rev: @@ -83311,6 +91611,8 @@ x-bte-kgs-operations: semantic: DiagnosticAid predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celc-LOCATION_OF-antb: @@ -83333,6 +91635,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc_umls-LOCATION_OF-nsba_ncbigene: @@ -83355,6 +91659,8 @@ x-bte-kgs-operations: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' sosy-MANIFESTATION_OF-anab: @@ -83374,11 +91680,37 @@ x-bte-kgs-operations: AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' + sosy-MANIFESTATION_OF-anab-rev: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: object.umls + parameters: + fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:sosy + AND _exists_:subject.umls AND pmid_count:>3 + outputs: + - id: UMLS + semantic: PhenotypicFeature + predicate: has_manifestation + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' patf-COMPLICATES-patf: - supportBatch: True useTemplating: True @@ -83397,8 +91729,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PathologicalProcess - predicate: exacerbates + predicate: exacerbates_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-COMPLICATES-patf-rev: @@ -83419,8 +91753,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PathologicalProcess - predicate: is_exacerbated_by + predicate: condition_exacerbated_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_umls-same_as-aapp_ncbigene: @@ -83443,6 +91779,8 @@ x-bte-kgs-operations: semantic: Gene predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' aapp_umls-same_as-aapp_ncbigene-rev: @@ -83465,6 +91803,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-LOCATION_OF-nnon: @@ -83487,6 +91827,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-PREDISPOSES-sosy-rev: @@ -83507,10 +91849,36 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' + anab-LOCATION_OF-virs: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:virs AND + _exists_:object.umls AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Virus + predicate: location_of + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' anab-LOCATION_OF-virs-rev: - supportBatch: True useTemplating: True @@ -83528,9 +91896,11 @@ x-bte-kgs-operations: _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-COEXISTS_WITH-elii: @@ -83553,6 +91923,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' elii-DISRUPTS-cell-rev: @@ -83575,6 +91947,32 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' + strd-TREATS-anab-rev: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: object.umls + parameters: + fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: SmallMolecule + predicate: subject_of_treatment_application_or_study_for_treatment_by + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-DISRUPTS-cell-rev: @@ -83597,6 +91995,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' antb-AFFECTS-sosy-rev: @@ -83619,6 +92019,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-CONVERTS_TO-gngm: @@ -83641,6 +92043,8 @@ x-bte-kgs-operations: semantic: Gene predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-CONVERTS_TO-gngm-rev: @@ -83663,6 +92067,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-DISRUPTS-celc-rev: @@ -83685,6 +92091,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-CONVERTS_TO-horm: @@ -83707,6 +92115,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-COMPLICATES-inpo: @@ -83727,8 +92137,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PathologicalProcess - predicate: exacerbates + predicate: exacerbates_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' opco-DISRUPTS-moft-rev: @@ -83751,6 +92163,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' clnd-AFFECTS-inpo: @@ -83773,6 +92187,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' clnd-AFFECTS-inpo-rev: @@ -83795,6 +92211,8 @@ x-bte-kgs-operations: semantic: Drug predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' clnd-CAUSES-patf: @@ -83817,6 +92235,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' clnd-CAUSES-patf-rev: @@ -83839,6 +92259,8 @@ x-bte-kgs-operations: semantic: Drug predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-INTERACTS_WITH-enzy_ncbigene: @@ -83861,6 +92283,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' tisu-PRODUCES-imft: @@ -83883,6 +92307,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' tisu-PRODUCES-imft-rev: @@ -83905,6 +92331,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' opco-AUGMENTS-celc-rev: @@ -83927,6 +92355,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -83953,6 +92383,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' antb-same_as-antb: @@ -83975,6 +92407,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' antb-same_as-antb-rev: @@ -83997,6 +92431,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-PRECEDES-horm: @@ -84019,6 +92455,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs_ncbigene-INTERACTS_WITH-aapp_umls-rev: @@ -84041,30 +92479,10 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' - sosy-COEXISTS_WITH-anab: - - supportBatch: True - useTemplating: True - inputs: - - id: UMLS - semantic: PhenotypicFeature - requestBody: - body: - q: '{{ queryInputs }}' - scopes: subject.umls - parameters: - fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name - size: 1000 - filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:anab AND - _exists_:object.umls AND pmid_count:>3 - outputs: - - id: UMLS - semantic: Disease - predicate: coexists_with - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-STIMULATES-horm: - supportBatch: True useTemplating: True @@ -84085,6 +92503,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -84111,6 +92531,8 @@ x-bte-kgs-operations: semantic: Disease predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-INHIBITS-inch: @@ -84133,6 +92555,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -84159,6 +92583,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -84185,6 +92611,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -84211,6 +92639,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -84237,6 +92667,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu_ncbigene-INTERACTS_WITH-aapp_umls-rev: @@ -84259,6 +92691,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' nusq-COEXISTS_WITH-phsu: @@ -84281,6 +92715,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AUGMENTS-mobd: @@ -84303,6 +92739,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -84329,6 +92767,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -84355,6 +92795,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-COEXISTS_WITH-nusq: @@ -84377,6 +92819,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-COEXISTS_WITH-nusq-rev: @@ -84399,6 +92843,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-AFFECTS-cgab: @@ -84421,6 +92867,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-PART_OF-bpoc-rev: @@ -84443,6 +92891,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-COEXISTS_WITH-nusq-rev: @@ -84465,6 +92915,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' enzy_ncbigene-DISRUPTS-ortf_umls-rev: @@ -84487,6 +92939,8 @@ x-bte-kgs-operations: semantic: Gene predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' gngm_ncbigene-AFFECTS-biof_umls-rev: @@ -84509,6 +92963,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' enzy-PART_OF-bact: @@ -84531,6 +92987,8 @@ x-bte-kgs-operations: semantic: Bacterium predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' enzy-PART_OF-bact-rev: @@ -84553,6 +93011,8 @@ x-bte-kgs-operations: semantic: Protein predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq_umls-INTERACTS_WITH-gngm_ncbigene: @@ -84575,6 +93035,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' gngm-INHIBITS-horm: @@ -84597,6 +93059,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -84623,6 +93087,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' horm-AUGMENTS-sosy-rev: @@ -84645,6 +93111,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -84671,6 +93139,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nnon-same_as-nnon: @@ -84693,6 +93163,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nnon-same_as-nnon-rev: @@ -84715,6 +93187,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-COEXISTS_WITH-imft: @@ -84737,6 +93211,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-COEXISTS_WITH-imft-rev: @@ -84759,6 +93235,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' opco-COEXISTS_WITH-aapp-rev: @@ -84781,6 +93259,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' mobd-MANIFESTATION_OF-inpo-rev: @@ -84803,6 +93283,8 @@ x-bte-kgs-operations: semantic: Disease predicate: has_manifestation source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nsba-PREDISPOSES-patf-rev: @@ -84823,8 +93305,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-AUGMENTS-comd-rev: @@ -84847,6 +93331,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -84873,6 +93359,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-INHIBITS-bacs: @@ -84895,6 +93383,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -84921,6 +93411,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -84947,6 +93439,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nnon-STIMULATES-gngm-rev: @@ -84969,6 +93463,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -84995,6 +93491,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-INTERACTS_WITH-horm: @@ -85017,6 +93515,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_umls-INTERACTS_WITH-enzy_ncbigene: @@ -85039,6 +93539,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' aapp_ncbigene-PREDISPOSES-sosy_umls: @@ -85059,8 +93561,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PhenotypicFeature - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-PREDISPOSES-sosy_umls-rev: @@ -85081,8 +93585,10 @@ x-bte-kgs-operations: outputs: - id: NCBIGene semantic: Gene - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' irda-INTERACTS_WITH-gngm: @@ -85105,6 +93611,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' irda-INTERACTS_WITH-gngm-rev: @@ -85127,6 +93635,8 @@ x-bte-kgs-operations: semantic: DiagnosticAid predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-MANIFESTATION_OF-phsf: @@ -85149,6 +93659,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-COEXISTS_WITH-rcpt_umls: @@ -85171,6 +93683,8 @@ x-bte-kgs-operations: semantic: Protein predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-COEXISTS_WITH-rcpt_umls-rev: @@ -85193,6 +93707,8 @@ x-bte-kgs-operations: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' acab-PART_OF-aggp-rev: @@ -85215,6 +93731,8 @@ x-bte-kgs-operations: semantic: Disease predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nnon-CAUSES-celf-rev: @@ -85237,6 +93755,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-AFFECTS-emod: @@ -85259,6 +93779,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-AFFECTS-emod-rev: @@ -85281,6 +93803,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nnon-DISRUPTS-inpo-rev: @@ -85303,6 +93827,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-LOCATION_OF-comd: @@ -85325,6 +93851,8 @@ x-bte-kgs-operations: semantic: Disease predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' sosy-MANIFESTATION_OF-dsyn: @@ -85347,6 +93875,8 @@ x-bte-kgs-operations: semantic: Disease predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nnon-PREVENTS-dsyn-rev: @@ -85367,8 +93897,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' neop-COMPLICATES-patf-rev: @@ -85389,8 +93921,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: is_exacerbated_by + predicate: condition_exacerbated_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc_umls-LOCATION_OF-phsu_ncbigene: @@ -85413,6 +93947,8 @@ x-bte-kgs-operations: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' elii-STIMULATES-enzy-rev: @@ -85435,6 +93971,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -85459,8 +93997,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-AFFECTS-celc: @@ -85483,6 +94023,8 @@ x-bte-kgs-operations: semantic: CellularComponent predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-AFFECTS-celc-rev: @@ -85505,6 +94047,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu_ncbigene-TREATS-sosy_umls: @@ -85525,8 +94069,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PhenotypicFeature - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu_ncbigene-TREATS-sosy_umls-rev: @@ -85547,8 +94093,10 @@ x-bte-kgs-operations: outputs: - id: NCBIGene semantic: Gene - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' gngm-INHIBITS-antb: @@ -85571,6 +94119,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -85597,6 +94147,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-DISRUPTS-moft: @@ -85619,6 +94171,8 @@ x-bte-kgs-operations: semantic: MolecularActivity predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-DISRUPTS-moft-rev: @@ -85641,6 +94195,8 @@ x-bte-kgs-operations: semantic: Protein predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nsba-AFFECTS-biof-rev: @@ -85663,6 +94219,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PRODUCES-nsba: @@ -85685,6 +94243,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' horm_ncbigene-TREATS-cgab_umls: @@ -85705,8 +94265,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bdsu-LOCATION_OF-nnon: @@ -85729,6 +94291,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-STIMULATES-elii: @@ -85751,6 +94315,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -85777,6 +94343,8 @@ x-bte-kgs-operations: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' virs-LOCATION_OF-gngm-rev: @@ -85799,6 +94367,8 @@ x-bte-kgs-operations: semantic: Virus predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd-STIMULATES-aapp-rev: @@ -85821,6 +94391,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -85847,6 +94419,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-CAUSES-neop: @@ -85869,6 +94443,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fngs-LOCATION_OF-rcpt: @@ -85891,6 +94467,8 @@ x-bte-kgs-operations: semantic: Protein predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fngs-LOCATION_OF-rcpt-rev: @@ -85913,6 +94491,8 @@ x-bte-kgs-operations: semantic: Fungus predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nsba-AFFECTS-fndg-rev: @@ -85935,6 +94515,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' opco_umls-STIMULATES-gngm_ncbigene-rev: @@ -85957,6 +94539,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -85980,9 +94564,11 @@ x-bte-kgs-operations: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-CONVERTS_TO-imft: @@ -86005,6 +94591,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-CONVERTS_TO-imft-rev: @@ -86027,6 +94615,8 @@ x-bte-kgs-operations: semantic: Gene predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-INTERACTS_WITH-nnon: @@ -86049,6 +94639,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' carb-AUGMENTS-biof-rev: @@ -86071,6 +94663,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -86097,6 +94691,8 @@ x-bte-kgs-operations: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PREDISPOSES-sosy: @@ -86117,8 +94713,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PhenotypicFeature - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PREDISPOSES-sosy-rev: @@ -86139,8 +94737,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Gene - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celc-PRODUCES-nnon: @@ -86163,6 +94763,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-AUGMENTS-inpo_umls: @@ -86185,6 +94787,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -86208,9 +94812,11 @@ x-bte-kgs-operations: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -86237,6 +94843,8 @@ x-bte-kgs-operations: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AFFECTS-cgab: @@ -86259,6 +94867,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' elii-COEXISTS_WITH-nusq-rev: @@ -86281,6 +94891,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' antb-ASSOCIATED_WITH-dsyn-rev: @@ -86303,6 +94915,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PRODUCES-carb: @@ -86325,6 +94939,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-AUGMENTS-celf: @@ -86347,6 +94963,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -86373,6 +94991,8 @@ x-bte-kgs-operations: semantic: Protein predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -86397,8 +95017,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PathologicalProcess - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-PREVENTS-patf-rev: @@ -86419,8 +95041,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: BiologicalEntity - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bact-LOCATION_OF-phsu: @@ -86443,6 +95067,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' sosy-MANIFESTATION_OF-acab: @@ -86465,6 +95091,8 @@ x-bte-kgs-operations: semantic: Disease predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-LOCATION_OF-bodm: @@ -86487,6 +95115,8 @@ x-bte-kgs-operations: semantic: Device predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-LOCATION_OF-bodm-rev: @@ -86509,6 +95139,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-PRODUCES-aapp: @@ -86531,6 +95163,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-PRODUCES-aapp-rev: @@ -86553,6 +95187,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' patf-MANIFESTATION_OF-ortf: @@ -86575,6 +95211,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-TREATS-mobd: @@ -86595,8 +95233,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nnon-AUGMENTS-inpo-rev: @@ -86619,6 +95259,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -86645,6 +95287,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cgab-LOCATION_OF-fngs-rev: @@ -86667,6 +95311,8 @@ x-bte-kgs-operations: semantic: Disease predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-COEXISTS_WITH-rcpt_umls-rev: @@ -86689,6 +95335,8 @@ x-bte-kgs-operations: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' celf-PRODUCES-bdsu-rev: @@ -86711,6 +95359,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-INTERACTS_WITH-phsu: @@ -86733,6 +95383,32 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' + anab-LOCATION_OF-emod: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:emod AND + _exists_:object.umls AND pmid_count:>3 + outputs: + - id: UMLS + semantic: BiologicalEntity + predicate: location_of + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' anab-LOCATION_OF-emod-rev: @@ -86752,9 +95428,11 @@ x-bte-kgs-operations: _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-AUGMENTS-sosy_umls: @@ -86777,6 +95455,8 @@ x-bte-kgs-operations: semantic: PhenotypicFeature predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -86803,6 +95483,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -86829,6 +95511,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-OCCURS_IN-inpo: @@ -86851,6 +95535,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: occurs_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-OCCURS_IN-inpo-rev: @@ -86873,6 +95559,8 @@ x-bte-kgs-operations: semantic: Disease predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-PREVENTS-acab_umls: @@ -86893,8 +95581,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-ADMINISTERED_TO-cell-rev: @@ -86917,6 +95607,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-STIMULATES-moft-rev: @@ -86939,6 +95631,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -86965,6 +95659,8 @@ x-bte-kgs-operations: semantic: Protein predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' enzy-CAUSES-celf: @@ -86987,6 +95683,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' enzy-CAUSES-celf-rev: @@ -87009,6 +95707,8 @@ x-bte-kgs-operations: semantic: Protein predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-AUGMENTS-moft_umls: @@ -87031,6 +95731,8 @@ x-bte-kgs-operations: semantic: MolecularActivity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -87057,6 +95759,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -87083,6 +95787,8 @@ x-bte-kgs-operations: semantic: Disease predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' opco-INHIBITS-ortf-rev: @@ -87105,6 +95811,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -87131,6 +95839,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-CONVERTS_TO-gngm_ncbigene: @@ -87153,6 +95863,8 @@ x-bte-kgs-operations: semantic: Gene predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' aapp_ncbigene-CONVERTS_TO-gngm_ncbigene-rev: @@ -87175,6 +95887,8 @@ x-bte-kgs-operations: semantic: Gene predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' bacs-AUGMENTS-celc-rev: @@ -87197,6 +95911,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -87223,18 +95939,44 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased + anab-COMPLICATES-anab: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:COMPLICATES AND object.semantic_type_abbreviation:anab AND + _exists_:object.umls AND pmid_count:>3 + outputs: + - id: UMLS + semantic: PhenotypicFeature + predicate: exacerbates_condition + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' anab-COMPLICATES-anab-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature requestBody: body: q: '{{ queryInputs }}' @@ -87246,9 +95988,11 @@ x-bte-kgs-operations: _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease - predicate: is_exacerbated_by + semantic: PhenotypicFeature + predicate: condition_exacerbated_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-CAUSES-comd: @@ -87271,6 +96015,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' strd_umls-COEXISTS_WITH-gngm_ncbigene-rev: @@ -87293,6 +96039,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' elii-AUGMENTS-moft-rev: @@ -87315,6 +96063,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -87341,6 +96091,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -87364,9 +96116,11 @@ x-bte-kgs-operations: AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: has_manifestation source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-ASSOCIATED_WITH-comd: @@ -87389,6 +96143,8 @@ x-bte-kgs-operations: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-PART_OF-aggp: @@ -87411,6 +96167,8 @@ x-bte-kgs-operations: semantic: Cohort predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-PART_OF-aggp-rev: @@ -87433,6 +96191,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bodm-COEXISTS_WITH-inch: @@ -87455,6 +96215,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bodm-COEXISTS_WITH-inch-rev: @@ -87477,6 +96239,8 @@ x-bte-kgs-operations: semantic: Device predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PRECEDES-topp: @@ -87499,6 +96263,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PRECEDES-topp-rev: @@ -87521,6 +96287,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' antb-INTERACTS_WITH-imft-rev: @@ -87543,6 +96311,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-same_as-inch: @@ -87565,6 +96335,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inch-same_as-inch-rev: @@ -87587,6 +96359,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-PRECEDES-nnon: @@ -87609,6 +96383,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PRODUCES-lipd: @@ -87631,6 +96407,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nsba-INTERACTS_WITH-irda-rev: @@ -87653,6 +96431,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' patf-PRODUCES-nsba: @@ -87675,6 +96455,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-INHIBITS-lipd: @@ -87697,6 +96479,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -87723,6 +96507,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-CAUSES-mobd: @@ -87745,6 +96531,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-CAUSES-mobd: @@ -87767,6 +96555,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' strd-INHIBITS-aapp-rev: @@ -87789,6 +96579,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -87815,6 +96607,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -87841,6 +96635,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' comd-AFFECTS-fngs-rev: @@ -87863,6 +96659,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-CONVERTS_TO-strd: @@ -87885,6 +96683,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu_ncbigene-TREATS-acab_umls: @@ -87905,8 +96705,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsf-ASSOCIATED_WITH-bacs: @@ -87929,6 +96731,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-COEXISTS_WITH-nnon: @@ -87951,6 +96755,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-AFFECTS-emst_umls: @@ -87973,6 +96779,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' comd-PRODUCES-enzy: @@ -87995,6 +96803,8 @@ x-bte-kgs-operations: semantic: Protein predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' comd-PRODUCES-enzy-rev: @@ -88017,6 +96827,8 @@ x-bte-kgs-operations: semantic: Disease predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nsba-DISRUPTS-patf-rev: @@ -88039,6 +96851,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-AFFECTS-emod-rev: @@ -88061,6 +96875,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-AUGMENTS-moft: @@ -88083,6 +96899,8 @@ x-bte-kgs-operations: semantic: MolecularActivity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -88109,6 +96927,8 @@ x-bte-kgs-operations: semantic: Protein predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -88135,6 +96955,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-INTERACTS_WITH-enzy: @@ -88157,6 +96979,8 @@ x-bte-kgs-operations: semantic: Protein predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-CONVERTS_TO-bacs: @@ -88179,6 +97003,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-CONVERTS_TO-bacs-rev: @@ -88201,6 +97027,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' patf-COEXISTS_WITH-sosy: @@ -88223,30 +97051,10 @@ x-bte-kgs-operations: semantic: PhenotypicFeature predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' - patf-COEXISTS_WITH-sosy-rev: - - supportBatch: True - useTemplating: True - inputs: - - id: UMLS - semantic: PhenotypicFeature - requestBody: - body: - q: '{{ queryInputs }}' - scopes: object.umls - parameters: - fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name - size: 1000 - filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 - outputs: - - id: UMLS - semantic: PathologicalProcess - predicate: coexists_with - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' acab-MANIFESTATION_OF-celf-rev: - supportBatch: True useTemplating: True @@ -88267,6 +97075,8 @@ x-bte-kgs-operations: semantic: Disease predicate: has_manifestation source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' irda-INHIBITS-gngm: @@ -88289,6 +97099,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -88315,6 +97127,8 @@ x-bte-kgs-operations: semantic: DiagnosticAid predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -88341,6 +97155,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-same_as-aapp_umls-rev: @@ -88363,6 +97179,8 @@ x-bte-kgs-operations: semantic: Gene predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' aapp-DISRUPTS-emst: @@ -88385,6 +97203,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' opco-DISRUPTS-bpoc-rev: @@ -88407,6 +97227,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celf_umls-PRODUCES-aapp_ncbigene: @@ -88429,6 +97251,8 @@ x-bte-kgs-operations: semantic: Gene predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' anst-LOCATION_OF-fngs: @@ -88451,6 +97275,8 @@ x-bte-kgs-operations: semantic: Fungus predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' anst-LOCATION_OF-fngs-rev: @@ -88473,6 +97299,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' antb-DISRUPTS-sosy-rev: @@ -88495,6 +97323,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' enzy-DISRUPTS-celf: @@ -88517,6 +97347,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' virs-LOCATION_OF-rcpt: @@ -88539,6 +97371,8 @@ x-bte-kgs-operations: semantic: Protein predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' virs-LOCATION_OF-rcpt-rev: @@ -88561,6 +97395,8 @@ x-bte-kgs-operations: semantic: Virus predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' irda-DISRUPTS-moft: @@ -88583,6 +97419,8 @@ x-bte-kgs-operations: semantic: MolecularActivity predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' irda-DISRUPTS-moft-rev: @@ -88605,6 +97443,8 @@ x-bte-kgs-operations: semantic: DiagnosticAid predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-STIMULATES-carb: @@ -88627,6 +97467,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -88653,6 +97495,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-INTERACTS_WITH-strd: @@ -88675,6 +97519,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-USES-eico: @@ -88697,6 +97543,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_input source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-INTERACTS_WITH-bact: @@ -88719,6 +97567,8 @@ x-bte-kgs-operations: semantic: Bacterium predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-INTERACTS_WITH-bact-rev: @@ -88741,6 +97591,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-COEXISTS_WITH-horm: @@ -88763,6 +97615,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bact-LOCATION_OF-strd: @@ -88785,6 +97639,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inch-AUGMENTS-anst-rev: @@ -88807,6 +97663,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -88833,6 +97691,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' diap-COEXISTS_WITH-topp: @@ -88855,6 +97715,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' diap-COEXISTS_WITH-topp-rev: @@ -88877,6 +97739,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft_umls-STIMULATES-aapp_ncbigene: @@ -88899,6 +97763,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: @@ -88925,6 +97791,8 @@ x-bte-kgs-operations: semantic: Gene predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PRODUCES-gngm-rev: @@ -88947,6 +97815,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-INTERACTS_WITH-inch: @@ -88969,6 +97839,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-PART_OF-phsu: @@ -88991,6 +97863,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-PART_OF-phsu-rev: @@ -89013,6 +97887,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd-INTERACTS_WITH-gngm-rev: @@ -89035,6 +97911,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-STIMULATES-imft-rev: @@ -89057,6 +97935,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -89083,6 +97963,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-AFFECTS-emod_umls: @@ -89105,6 +97987,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-AFFECTS-emod_umls-rev: @@ -89127,6 +98011,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' nsba-TREATS-mobd-rev: @@ -89147,8 +98033,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd-PREDISPOSES-patf-rev: @@ -89169,8 +98057,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' plnt-LOCATION_OF-nsba: @@ -89193,6 +98083,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-AUGMENTS-moft_umls-rev: @@ -89215,6 +98107,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -89241,6 +98135,8 @@ x-bte-kgs-operations: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-DISRUPTS-biof: @@ -89263,6 +98159,8 @@ x-bte-kgs-operations: semantic: Phenomenon predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-DISRUPTS-biof-rev: @@ -89285,6 +98183,8 @@ x-bte-kgs-operations: semantic: Gene predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' eico-INTERACTS_WITH-imft-rev: @@ -89307,6 +98207,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' medd-CAUSES-mobd: @@ -89329,6 +98231,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq_umls-INHIBITS-gngm_ncbigene: @@ -89351,6 +98255,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: @@ -89377,6 +98283,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -89403,6 +98311,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: @@ -89429,6 +98339,8 @@ x-bte-kgs-operations: semantic: Protein predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -89455,6 +98367,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -89481,6 +98395,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' irda-ADMINISTERED_TO-cell: @@ -89503,6 +98419,8 @@ x-bte-kgs-operations: semantic: Cell predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' irda-ADMINISTERED_TO-cell-rev: @@ -89525,6 +98443,8 @@ x-bte-kgs-operations: semantic: DiagnosticAid predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsf-PRODUCES-aapp-rev: @@ -89547,6 +98467,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' irda-COEXISTS_WITH-hops: @@ -89569,6 +98491,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-COMPLICATES-neop: @@ -89589,8 +98513,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: exacerbates + predicate: exacerbates_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-INTERACTS_WITH-bact_umls-rev: @@ -89613,6 +98539,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' imft-STIMULATES-orch: @@ -89635,6 +98563,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -89661,6 +98591,8 @@ x-bte-kgs-operations: semantic: Disease predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' mobd-MANIFESTATION_OF-orgf-rev: @@ -89683,6 +98615,8 @@ x-bte-kgs-operations: semantic: Disease predicate: has_manifestation source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-INHIBITS-strd_umls: @@ -89705,6 +98639,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -89731,6 +98667,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -89757,6 +98695,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celf-AFFECTS-emod-rev: @@ -89779,6 +98719,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nsba-CAUSES-phsf-rev: @@ -89801,6 +98743,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' elii-DISRUPTS-neop-rev: @@ -89823,6 +98767,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bdsu_umls-LOCATION_OF-phsu_ncbigene: @@ -89845,6 +98791,8 @@ x-bte-kgs-operations: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' rcpt-INTERACTS_WITH-inch: @@ -89867,6 +98815,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cgab-MANIFESTATION_OF-orgf-rev: @@ -89889,6 +98839,8 @@ x-bte-kgs-operations: semantic: Disease predicate: has_manifestation source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' enzy-PART_OF-celc-rev: @@ -89911,6 +98863,8 @@ x-bte-kgs-operations: semantic: Protein predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-STIMULATES-antb: @@ -89933,6 +98887,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -89959,6 +98915,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -89985,6 +98943,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-PRODUCES-horm: @@ -90007,6 +98967,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-AFFECTS-celc: @@ -90029,6 +98991,8 @@ x-bte-kgs-operations: semantic: CellularComponent predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-AFFECTS-celc-rev: @@ -90051,6 +99015,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-CAUSES-celf-rev: @@ -90073,6 +99039,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nnon-INHIBITS-bacs-rev: @@ -90095,6 +99063,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -90121,6 +99091,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-TREATS-virs_umls-rev: @@ -90141,8 +99113,10 @@ x-bte-kgs-operations: outputs: - id: NCBIGene semantic: Gene - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' orch-INHIBITS-rcpt: @@ -90165,6 +99139,8 @@ x-bte-kgs-operations: semantic: Protein predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -90191,6 +99167,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-PRODUCES-imft-rev: @@ -90213,6 +99191,8 @@ x-bte-kgs-operations: semantic: CellularComponent predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-COEXISTS_WITH-strd_umls: @@ -90235,6 +99215,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-INHIBITS-orch: @@ -90257,6 +99239,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -90281,8 +99265,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-PREVENTS-sosy-rev: @@ -90303,8 +99289,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-AFFECTS-phsf: @@ -90327,6 +99315,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-CAUSES-cgab: @@ -90349,6 +99339,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-AFFECTS-emod: @@ -90371,6 +99363,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-AFFECTS-emod-rev: @@ -90393,6 +99387,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nnon-PART_OF-virs-rev: @@ -90415,6 +99411,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-PART_OF-aapp-rev: @@ -90437,6 +99435,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' diap-USES-aapp-rev: @@ -90459,6 +99459,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: is_input_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsf-PRODUCES-bdsu-rev: @@ -90481,6 +99483,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-INTERACTS_WITH-strd: @@ -90503,6 +99507,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-STIMULATES-lipd: @@ -90525,6 +99531,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -90551,6 +99559,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsf-AFFECTS-fngs-rev: @@ -90573,6 +99583,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-PRODUCES-gngm_ncbigene: @@ -90595,6 +99607,8 @@ x-bte-kgs-operations: semantic: Gene predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' gngm_ncbigene-INTERACTS_WITH-enzy_umls: @@ -90617,6 +99631,8 @@ x-bte-kgs-operations: semantic: Protein predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-INHIBITS-inch_umls: @@ -90639,6 +99655,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -90665,6 +99683,8 @@ x-bte-kgs-operations: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bdsu-CAUSES-mobd: @@ -90687,6 +99707,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' comd-PRECEDES-patf-rev: @@ -90709,6 +99731,8 @@ x-bte-kgs-operations: semantic: Disease predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-PREDISPOSES-sosy-rev: @@ -90729,8 +99753,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd-PART_OF-bact-rev: @@ -90753,6 +99779,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-STIMULATES-nsba: @@ -90775,6 +99803,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -90801,6 +99831,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-PRODUCES-carb: @@ -90823,6 +99855,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' clnd-PREVENTS-inpo: @@ -90843,8 +99877,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PathologicalProcess - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' clnd-PREVENTS-inpo-rev: @@ -90865,8 +99901,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Drug - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-INHIBITS-ortf-rev: @@ -90889,6 +99927,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -90915,6 +99955,8 @@ x-bte-kgs-operations: semantic: Disease predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' fngs-CAUSES-comd: @@ -90937,6 +99979,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' opco-PREVENTS-inpo-rev: @@ -90957,8 +100001,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' enzy-ASSOCIATED_WITH-neop-rev: @@ -90981,6 +100027,8 @@ x-bte-kgs-operations: semantic: Protein predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd-CAUSES-phsf-rev: @@ -91003,6 +100051,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' food-CAUSES-cgab: @@ -91025,6 +100075,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-AUGMENTS-cell_umls-rev: @@ -91047,6 +100099,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -91073,6 +100127,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' lbtr-MANIFESTATION_OF-celf-rev: @@ -91095,6 +100151,8 @@ x-bte-kgs-operations: semantic: Phenomenon predicate: has_manifestation source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-STIMULATES-orgf: @@ -91117,6 +100175,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -91143,6 +100203,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -91169,6 +100231,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' inpo-DISRUPTS-celc: @@ -91191,6 +100255,8 @@ x-bte-kgs-operations: semantic: CellularComponent predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inpo-DISRUPTS-celc-rev: @@ -91213,6 +100279,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' fndg-COEXISTS_WITH-neop: @@ -91235,6 +100303,8 @@ x-bte-kgs-operations: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' eico-ASSOCIATED_WITH-sosy-rev: @@ -91257,6 +100327,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-DISRUPTS-bpoc-rev: @@ -91279,6 +100351,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-ADMINISTERED_TO-aggp-rev: @@ -91301,6 +100375,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' patf-CAUSES-patf-rev: @@ -91323,6 +100399,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-TREATS-patf: @@ -91343,8 +100421,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PathologicalProcess - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-TREATS-patf-rev: @@ -91365,8 +100445,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: BiologicalEntity - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-INTERACTS_WITH-nsba: @@ -91389,6 +100471,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-same_as-gngm_ncbigene: @@ -91411,6 +100495,8 @@ x-bte-kgs-operations: semantic: Gene predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' gngm_ncbigene-same_as-gngm_ncbigene-rev: @@ -91433,6 +100519,8 @@ x-bte-kgs-operations: semantic: Gene predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' gngm_ncbigene-PRODUCES-strd_umls: @@ -91455,6 +100543,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs_ncbigene-ASSOCIATED_WITH-dsyn_umls-rev: @@ -91477,6 +100567,8 @@ x-bte-kgs-operations: semantic: Gene predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' gngm-PRODUCES-hops: @@ -91499,6 +100591,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-PART_OF-aggp: @@ -91521,6 +100615,8 @@ x-bte-kgs-operations: semantic: Cohort predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-PART_OF-aggp-rev: @@ -91543,6 +100639,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell_umls-LOCATION_OF-phsu_ncbigene: @@ -91565,6 +100663,8 @@ x-bte-kgs-operations: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' bpoc-PRODUCES-gngm: @@ -91587,6 +100687,8 @@ x-bte-kgs-operations: semantic: Gene predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-PRODUCES-gngm-rev: @@ -91609,6 +100711,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-TREATS-cgab: @@ -91629,8 +100733,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' carb-DISRUPTS-moft-rev: @@ -91653,6 +100759,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-PRODUCES-gngm_umls: @@ -91675,6 +100783,8 @@ x-bte-kgs-operations: semantic: Gene predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-PRODUCES-gngm_umls-rev: @@ -91697,6 +100807,8 @@ x-bte-kgs-operations: semantic: Gene predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' rcpt-AFFECTS-celc: @@ -91719,6 +100831,8 @@ x-bte-kgs-operations: semantic: CellularComponent predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-AFFECTS-celc-rev: @@ -91741,6 +100855,8 @@ x-bte-kgs-operations: semantic: Protein predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-PART_OF-celc-rev: @@ -91763,6 +100879,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orgf-AFFECTS-emod-rev: @@ -91785,6 +100903,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' antb-STIMULATES-imft-rev: @@ -91807,6 +100927,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -91833,6 +100955,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-CONVERTS_TO-imft_umls-rev: @@ -91855,6 +100979,8 @@ x-bte-kgs-operations: semantic: Gene predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' horm-AUGMENTS-anab: @@ -91874,9 +101000,11 @@ x-bte-kgs-operations: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -91903,6 +101031,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -91929,6 +101059,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' irda_umls-INHIBITS-gngm_ncbigene: @@ -91951,6 +101083,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: @@ -91977,6 +101111,8 @@ x-bte-kgs-operations: semantic: DiagnosticAid predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -92003,6 +101139,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-PRECEDES-emod-rev: @@ -92025,6 +101163,8 @@ x-bte-kgs-operations: semantic: Disease predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' enzy-DISRUPTS-orgf: @@ -92047,6 +101187,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fndg-COMPLICATES-inpo: @@ -92067,8 +101209,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PathologicalProcess - predicate: exacerbates + predicate: exacerbates_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fndg-COMPLICATES-inpo-rev: @@ -92089,8 +101233,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - predicate: is_exacerbated_by + predicate: condition_exacerbated_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-same_as-orch-rev: @@ -92113,6 +101259,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-PRODUCES-phsu: @@ -92135,6 +101283,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-DISRUPTS-inpo: @@ -92157,6 +101307,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' irda-CAUSES-celf: @@ -92179,6 +101331,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' irda-CAUSES-celf-rev: @@ -92201,6 +101355,8 @@ x-bte-kgs-operations: semantic: DiagnosticAid predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-ADMINISTERED_TO-aggp-rev: @@ -92223,6 +101379,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-AUGMENTS-fndg-rev: @@ -92245,6 +101403,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -92271,6 +101431,8 @@ x-bte-kgs-operations: semantic: Protein predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-INTERACTS_WITH-imft-rev: @@ -92293,6 +101455,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' fngs-LOCATION_OF-nsba: @@ -92315,6 +101479,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' strd-DISRUPTS-neop-rev: @@ -92337,6 +101503,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-AFFECTS-inpo: @@ -92359,6 +101527,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-LOCATION_OF-imft: @@ -92381,6 +101551,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-INTERACTS_WITH-eico: @@ -92403,6 +101575,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' carb-AFFECTS-moft-rev: @@ -92425,6 +101599,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_umls-CONVERTS_TO-gngm_ncbigene: @@ -92447,6 +101623,8 @@ x-bte-kgs-operations: semantic: Gene predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' gngm_umls-CONVERTS_TO-gngm_ncbigene-rev: @@ -92469,6 +101647,56 @@ x-bte-kgs-operations: semantic: Gene predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' + sbst-CAUSES-anab: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: ChemicalEntity + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:anab AND _exists_:object.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: PhenotypicFeature + predicate: causes + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' + sbst-CAUSES-anab-rev: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: object.umls + parameters: + fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:sbst AND _exists_:subject.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: ChemicalEntity + predicate: caused_by + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-CAUSES-celf: @@ -92491,6 +101719,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-CAUSES-celf-rev: @@ -92513,6 +101743,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' tisu-LOCATION_OF-irda-rev: @@ -92535,6 +101767,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-AUGMENTS-biof_umls: @@ -92557,6 +101791,8 @@ x-bte-kgs-operations: semantic: Phenomenon predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -92583,6 +101819,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -92607,8 +101845,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-COEXISTS_WITH-nusq-rev: @@ -92631,6 +101871,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-DISRUPTS-sosy_umls-rev: @@ -92653,8 +101895,34 @@ x-bte-kgs-operations: semantic: Gene predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' + mobd-COEXISTS_WITH-anab-rev: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: object.umls + parameters: + fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:mobd + AND _exists_:subject.umls AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Disease + predicate: coexists_with + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' horm_ncbigene-STIMULATES-gngm_umls-rev: - supportBatch: True useTemplating: True @@ -92675,6 +101943,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -92701,6 +101971,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -92727,6 +101999,8 @@ x-bte-kgs-operations: semantic: Protein predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -92753,6 +102027,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inch-AUGMENTS-moft-rev: @@ -92775,6 +102051,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -92801,6 +102079,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -92827,6 +102107,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nnon-DISRUPTS-celc-rev: @@ -92849,6 +102131,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-STIMULATES-bacs: @@ -92871,6 +102155,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -92897,6 +102183,8 @@ x-bte-kgs-operations: semantic: Protein predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -92923,6 +102211,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-AUGMENTS-celf: @@ -92945,6 +102235,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -92971,6 +102263,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -92997,6 +102291,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-INTERACTS_WITH-antb: @@ -93019,6 +102315,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-AUGMENTS-sosy_umls-rev: @@ -93041,6 +102339,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -93067,6 +102367,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: @@ -93091,8 +102393,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: exacerbates + predicate: exacerbates_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-COMPLICATES-dsyn-rev: @@ -93113,8 +102417,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Procedure - predicate: is_exacerbated_by + predicate: condition_exacerbated_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' mobd-PRECEDES-patf-rev: @@ -93137,6 +102443,8 @@ x-bte-kgs-operations: semantic: Disease predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-AFFECTS-emod: @@ -93159,6 +102467,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-AFFECTS-emod-rev: @@ -93181,6 +102491,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' biof-PRODUCES-imft: @@ -93203,6 +102515,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' biof-PRODUCES-imft-rev: @@ -93225,6 +102539,8 @@ x-bte-kgs-operations: semantic: Phenomenon predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-AFFECTS-emod-rev: @@ -93247,6 +102563,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' ortf-AFFECTS-bact-rev: @@ -93269,6 +102587,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-AUGMENTS-biof-rev: @@ -93291,6 +102611,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -93315,8 +102637,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PathologicalProcess - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-PART_OF-anst: @@ -93339,6 +102663,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-PART_OF-anst-rev: @@ -93361,6 +102687,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-DISRUPTS-biof-rev: @@ -93383,6 +102711,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-PRODUCES-imft_umls: @@ -93405,6 +102735,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-PRODUCES-imft_umls-rev: @@ -93427,6 +102759,8 @@ x-bte-kgs-operations: semantic: Gene predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' patf_umls-PRODUCES-imft_ncbigene: @@ -93449,6 +102783,8 @@ x-bte-kgs-operations: semantic: Gene predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' rcpt-DISRUPTS-bpoc: @@ -93471,6 +102807,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-DISRUPTS-bpoc-rev: @@ -93493,6 +102831,8 @@ x-bte-kgs-operations: semantic: Protein predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-ASSOCIATED_WITH-sosy-rev: @@ -93515,6 +102855,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell-LOCATION_OF-irda: @@ -93537,6 +102879,8 @@ x-bte-kgs-operations: semantic: DiagnosticAid predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-LOCATION_OF-irda-rev: @@ -93559,6 +102903,8 @@ x-bte-kgs-operations: semantic: Cell predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-CONVERTS_TO-nusq: @@ -93581,6 +102927,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-CONVERTS_TO-nusq-rev: @@ -93603,6 +102951,8 @@ x-bte-kgs-operations: semantic: Gene predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' clnd-AFFECTS-dsyn: @@ -93625,6 +102975,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' clnd-AFFECTS-dsyn-rev: @@ -93647,6 +102999,8 @@ x-bte-kgs-operations: semantic: Drug predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-PRODUCES-rcpt: @@ -93669,6 +103023,8 @@ x-bte-kgs-operations: semantic: Protein predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PRODUCES-rcpt-rev: @@ -93691,6 +103047,8 @@ x-bte-kgs-operations: semantic: Gene predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cgab-PROCESS_OF-aggp-rev: @@ -93713,6 +103071,8 @@ x-bte-kgs-operations: semantic: Disease predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs_ncbigene-CAUSES-biof_umls: @@ -93735,6 +103095,8 @@ x-bte-kgs-operations: semantic: Phenomenon predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs_ncbigene-CAUSES-biof_umls-rev: @@ -93757,6 +103119,8 @@ x-bte-kgs-operations: semantic: Gene predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' lipd-PART_OF-virs-rev: @@ -93779,6 +103143,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-DISRUPTS-moft: @@ -93801,6 +103167,8 @@ x-bte-kgs-operations: semantic: MolecularActivity predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-DISRUPTS-moft-rev: @@ -93823,6 +103191,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' enzy-INHIBITS-gngm-rev: @@ -93845,6 +103215,8 @@ x-bte-kgs-operations: semantic: Protein predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -93871,6 +103243,8 @@ x-bte-kgs-operations: semantic: Protein predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -93897,6 +103271,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -93923,6 +103299,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cgab-MANIFESTATION_OF-patf-rev: @@ -93945,6 +103323,8 @@ x-bte-kgs-operations: semantic: Disease predicate: has_manifestation source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsf-ASSOCIATED_WITH-horm: @@ -93967,6 +103347,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PREVENTS-neop: @@ -93987,8 +103369,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PREVENTS-neop-rev: @@ -94009,8 +103393,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Gene - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-INTERACTS_WITH-irda-rev: @@ -94033,6 +103419,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-CAUSES-orgf: @@ -94055,6 +103443,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' eico-AUGMENTS-patf-rev: @@ -94077,6 +103467,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -94101,8 +103493,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' opco_umls-INTERACTS_WITH-aapp_ncbigene-rev: @@ -94125,6 +103519,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-INHIBITS-fndg-rev: @@ -94147,6 +103543,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -94173,6 +103571,8 @@ x-bte-kgs-operations: semantic: Protein predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-COEXISTS_WITH-rcpt-rev: @@ -94195,6 +103595,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-COEXISTS_WITH-elii: @@ -94217,6 +103619,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nsba-DISRUPTS-mobd-rev: @@ -94239,6 +103643,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' opco-AUGMENTS-moft-rev: @@ -94261,6 +103667,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -94287,6 +103695,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' horm-PRECEDES-topp-rev: @@ -94309,6 +103719,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' opco-INHIBITS-bacs-rev: @@ -94331,6 +103743,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -94357,6 +103771,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-AFFECTS-comd: @@ -94379,6 +103795,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-AUGMENTS-moft: @@ -94401,6 +103819,8 @@ x-bte-kgs-operations: semantic: MolecularActivity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -94427,6 +103847,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -94453,6 +103875,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: @@ -94479,6 +103903,8 @@ x-bte-kgs-operations: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' inch-AFFECTS-anst-rev: @@ -94501,6 +103927,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bdsu-CAUSES-anab: @@ -94520,11 +103948,37 @@ x-bte-kgs-operations: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' + bdsu-CAUSES-anab-rev: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: object.umls + parameters: + fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:bdsu AND _exists_:subject.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: AnatomicalEntity + predicate: caused_by + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' topp-USES-irda-rev: - supportBatch: True useTemplating: True @@ -94545,6 +103999,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: is_input_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-PART_OF-celc-rev: @@ -94567,6 +104023,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-DISRUPTS-emst: @@ -94589,6 +104047,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-DISRUPTS-emst-rev: @@ -94611,6 +104071,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-INTERACTS_WITH-rcpt-rev: @@ -94633,6 +104095,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-DISRUPTS-biof-rev: @@ -94655,6 +104119,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-USES-drdd: @@ -94677,6 +104143,8 @@ x-bte-kgs-operations: semantic: Device predicate: has_input source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-PRECEDES-topp-rev: @@ -94699,6 +104167,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-PRECEDES-diap: @@ -94721,6 +104191,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PREVENTS-patf: @@ -94741,8 +104213,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PathologicalProcess - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PREVENTS-patf-rev: @@ -94763,8 +104237,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Gene - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orga-MANIFESTATION_OF-phsf: @@ -94787,6 +104263,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-AFFECTS-emod-rev: @@ -94809,6 +104287,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' patf-AFFECTS-fngs: @@ -94831,6 +104311,8 @@ x-bte-kgs-operations: semantic: Fungus predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-AFFECTS-fngs-rev: @@ -94853,6 +104335,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' clnd-CAUSES-inpo: @@ -94875,6 +104359,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' lipd-TREATS-sosy-rev: @@ -94895,8 +104381,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_umls-INTERACTS_WITH-horm_ncbigene: @@ -94919,6 +104407,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' medd-USES-aapp: @@ -94941,6 +104431,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: has_input source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' medd-USES-aapp-rev: @@ -94963,6 +104455,8 @@ x-bte-kgs-operations: semantic: Device predicate: is_input_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' irda_umls-INTERACTS_WITH-gngm_ncbigene: @@ -94985,6 +104479,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' bacs-PART_OF-bacs: @@ -95007,6 +104503,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-INHIBITS-lipd: @@ -95029,6 +104527,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -95055,6 +104555,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-INTERACTS_WITH-imft-rev: @@ -95077,6 +104579,8 @@ x-bte-kgs-operations: semantic: Protein predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-INHIBITS-ortf-rev: @@ -95099,6 +104603,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -95125,6 +104631,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -95151,6 +104659,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-CAUSES-sosy_umls-rev: @@ -95173,6 +104683,8 @@ x-bte-kgs-operations: semantic: Gene predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' bacs-TREATS-sosy-rev: @@ -95193,8 +104705,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-PREVENTS-mobd_umls: @@ -95215,8 +104729,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inch-TREATS-sosy-rev: @@ -95237,8 +104753,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' irda-COEXISTS_WITH-bacs: @@ -95261,6 +104779,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-TREATS-patf_umls-rev: @@ -95281,8 +104801,10 @@ x-bte-kgs-operations: outputs: - id: NCBIGene semantic: Gene - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' antb-COEXISTS_WITH-imft-rev: @@ -95305,6 +104827,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-INTERACTS_WITH-bodm-rev: @@ -95327,6 +104851,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-CONVERTS_TO-imft_umls-rev: @@ -95349,6 +104875,8 @@ x-bte-kgs-operations: semantic: Gene predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' aapp_ncbigene-STIMULATES-rcpt_umls: @@ -95371,6 +104899,8 @@ x-bte-kgs-operations: semantic: Protein predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -95397,6 +104927,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -95421,8 +104953,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-USES-opco: @@ -95445,6 +104979,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_input source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-AFFECTS-cgab_umls: @@ -95467,6 +105003,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-AFFECTS-cell: @@ -95489,6 +105027,8 @@ x-bte-kgs-operations: semantic: Cell predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-AFFECTS-cell-rev: @@ -95511,6 +105051,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-same_as-phsu: @@ -95533,6 +105075,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' enzy-AFFECTS-moft-rev: @@ -95555,6 +105099,8 @@ x-bte-kgs-operations: semantic: Protein predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-PART_OF-bpoc-rev: @@ -95577,6 +105123,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-INHIBITS-nusq: @@ -95599,6 +105147,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -95625,6 +105175,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -95651,6 +105203,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -95677,6 +105231,8 @@ x-bte-kgs-operations: semantic: Disease predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu_ncbigene-STIMULATES-gngm_ncbigene-rev: @@ -95699,6 +105255,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -95725,6 +105283,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PRODUCES-phsu: @@ -95747,6 +105307,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' enzy-PART_OF-cell-rev: @@ -95769,6 +105331,8 @@ x-bte-kgs-operations: semantic: Protein predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-TREATS-patf-rev: @@ -95789,8 +105353,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' mobd-COEXISTS_WITH-fndg-rev: @@ -95813,6 +105379,8 @@ x-bte-kgs-operations: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-AUGMENTS-sosy-rev: @@ -95835,6 +105403,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -95861,6 +105431,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' imft-same_as-imft: @@ -95883,6 +105455,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-same_as-imft-rev: @@ -95905,6 +105479,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' anst-PART_OF-aggp-rev: @@ -95927,6 +105503,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-INHIBITS-imft_umls: @@ -95949,6 +105527,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -95975,6 +105555,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -96001,6 +105583,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -96027,6 +105611,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' antb-ADMINISTERED_TO-aggp-rev: @@ -96049,6 +105635,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-PREDISPOSES-sosy-rev: @@ -96069,8 +105657,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-CAUSES-acab: @@ -96093,6 +105683,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-AUGMENTS-orgf: @@ -96115,6 +105707,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -96141,6 +105735,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orga-ASSOCIATED_WITH-cgab: @@ -96163,6 +105759,8 @@ x-bte-kgs-operations: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-COEXISTS_WITH-rcpt: @@ -96185,6 +105783,8 @@ x-bte-kgs-operations: semantic: Protein predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-COEXISTS_WITH-rcpt-rev: @@ -96207,6 +105807,8 @@ x-bte-kgs-operations: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-CONVERTS_TO-orch_umls: @@ -96229,6 +105831,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' opco-INHIBITS-aapp-rev: @@ -96251,6 +105855,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -96277,6 +105883,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orga-MANIFESTATION_OF-ortf: @@ -96299,6 +105907,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-COEXISTS_WITH-irda: @@ -96321,6 +105931,8 @@ x-bte-kgs-operations: semantic: DiagnosticAid predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-COEXISTS_WITH-irda-rev: @@ -96343,6 +105955,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp_umls-PRECEDES-aapp_ncbigene: @@ -96365,6 +105979,8 @@ x-bte-kgs-operations: semantic: Gene predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' topp_umls-PRECEDES-aapp_ncbigene-rev: @@ -96387,6 +106003,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-INHIBITS-elii: @@ -96409,6 +106027,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -96435,6 +106055,8 @@ x-bte-kgs-operations: semantic: Bacterium predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' anst-LOCATION_OF-bact-rev: @@ -96457,6 +106079,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-DISRUPTS-celc-rev: @@ -96479,6 +106103,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' elii-COEXISTS_WITH-enzy: @@ -96501,6 +106127,8 @@ x-bte-kgs-operations: semantic: Protein predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell_umls-LOCATION_OF-horm_ncbigene: @@ -96523,6 +106151,8 @@ x-bte-kgs-operations: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' rcpt-INHIBITS-bacs: @@ -96545,6 +106175,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -96571,6 +106203,8 @@ x-bte-kgs-operations: semantic: Protein predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -96597,6 +106231,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-PREDISPOSES-sosy-rev: @@ -96617,8 +106253,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-DISRUPTS-emst: @@ -96641,6 +106279,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nnon-AUGMENTS-moft-rev: @@ -96663,6 +106303,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -96689,6 +106331,8 @@ x-bte-kgs-operations: semantic: Protein predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' moft-AFFECTS-bacs: @@ -96711,6 +106355,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' moft-AFFECTS-bacs-rev: @@ -96733,6 +106379,8 @@ x-bte-kgs-operations: semantic: MolecularActivity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' eico-DISRUPTS-bpoc-rev: @@ -96755,6 +106403,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-STIMULATES-nusq-rev: @@ -96777,6 +106427,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -96803,6 +106455,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-PRODUCES-imft-rev: @@ -96825,6 +106479,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-PART_OF-celc-rev: @@ -96847,6 +106503,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd-PART_OF-aggp-rev: @@ -96869,6 +106527,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell_umls-LOCATION_OF-bacs_ncbigene: @@ -96891,6 +106551,8 @@ x-bte-kgs-operations: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' lipd-PREVENTS-dsyn-rev: @@ -96911,8 +106573,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsf-ASSOCIATED_WITH-aapp: @@ -96935,6 +106599,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsf-ASSOCIATED_WITH-aapp-rev: @@ -96957,6 +106623,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' anab-CAUSES-dsyn-rev: @@ -96976,9 +106644,11 @@ x-bte-kgs-operations: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-INTERACTS_WITH-rcpt: @@ -97001,6 +106671,8 @@ x-bte-kgs-operations: semantic: Protein predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-INTERACTS_WITH-rcpt-rev: @@ -97023,6 +106695,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-AFFECTS-moft-rev: @@ -97045,6 +106719,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orgf-ASSOCIATED_WITH-cgab: @@ -97067,6 +106743,8 @@ x-bte-kgs-operations: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' eico-AUGMENTS-celc-rev: @@ -97089,6 +106767,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -97115,6 +106795,8 @@ x-bte-kgs-operations: semantic: Gene predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' tisu-LOCATION_OF-sosy-rev: @@ -97137,6 +106819,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' elii-DISRUPTS-tisu-rev: @@ -97159,6 +106843,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-ADMINISTERED_TO-emod: @@ -97181,6 +106867,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-ADMINISTERED_TO-emod-rev: @@ -97203,6 +106891,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' fndg-ASSOCIATED_WITH-dsyn: @@ -97225,6 +106915,8 @@ x-bte-kgs-operations: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fndg-ASSOCIATED_WITH-dsyn-rev: @@ -97247,6 +106939,8 @@ x-bte-kgs-operations: semantic: DiseaseOrPhenotypicFeature predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-INHIBITS-orch: @@ -97269,6 +106963,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -97295,6 +106991,8 @@ x-bte-kgs-operations: semantic: MolecularActivity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-COEXISTS_WITH-moft-rev: @@ -97317,6 +107015,8 @@ x-bte-kgs-operations: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' ortf-PRODUCES-aapp-rev: @@ -97339,6 +107039,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-STIMULATES-antb: @@ -97361,6 +107063,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -97387,6 +107091,8 @@ x-bte-kgs-operations: semantic: Gene predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' topp-COEXISTS_WITH-diap: @@ -97409,6 +107115,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-COEXISTS_WITH-diap-rev: @@ -97431,6 +107139,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt_ncbigene-DISRUPTS-ortf_umls-rev: @@ -97453,6 +107163,8 @@ x-bte-kgs-operations: semantic: Gene predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' bacs_ncbigene-COEXISTS_WITH-aapp_umls-rev: @@ -97475,6 +107187,8 @@ x-bte-kgs-operations: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' eico-CONVERTS_TO-gngm-rev: @@ -97497,6 +107211,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' clnd-TREATS-anab: @@ -97516,11 +107232,37 @@ x-bte-kgs-operations: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease - predicate: treats + semantic: PhenotypicFeature + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' + clnd-TREATS-anab-rev: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: object.umls + parameters: + fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:clnd AND _exists_:subject.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Drug + predicate: subject_of_treatment_application_or_study_for_treatment_by + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' elii-AUGMENTS-sosy-rev: - supportBatch: True useTemplating: True @@ -97541,6 +107283,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -97567,6 +107311,8 @@ x-bte-kgs-operations: semantic: Gene predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' carb-COEXISTS_WITH-rcpt-rev: @@ -97589,6 +107335,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-CONVERTS_TO-antb: @@ -97611,6 +107359,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-INTERACTS_WITH-elii: @@ -97633,6 +107383,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' eico-AFFECTS-celc-rev: @@ -97655,6 +107407,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' fngs-LOCATION_OF-opco: @@ -97677,6 +107431,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-AFFECTS-anst-rev: @@ -97699,6 +107455,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nnon-PREVENTS-patf-rev: @@ -97719,8 +107477,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nnon-TREATS-patf-rev: @@ -97741,8 +107501,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-INHIBITS-nusq-rev: @@ -97765,6 +107527,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -97791,6 +107555,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cgab-PREDISPOSES-neop-rev: @@ -97811,8 +107577,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' elii-AFFECTS-anst-rev: @@ -97835,6 +107603,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-same_as-gngm: @@ -97857,6 +107627,8 @@ x-bte-kgs-operations: semantic: Gene predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-same_as-gngm-rev: @@ -97879,6 +107651,8 @@ x-bte-kgs-operations: semantic: Gene predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celc-LOCATION_OF-irda: @@ -97901,6 +107675,8 @@ x-bte-kgs-operations: semantic: DiagnosticAid predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-LOCATION_OF-irda-rev: @@ -97923,6 +107699,8 @@ x-bte-kgs-operations: semantic: CellularComponent predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd-COEXISTS_WITH-nusq-rev: @@ -97945,6 +107723,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-TREATS-sosy-rev: @@ -97965,8 +107745,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' food-CAUSES-anab: @@ -97986,11 +107768,37 @@ x-bte-kgs-operations: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' + food-CAUSES-anab-rev: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: object.umls + parameters: + fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:food AND _exists_:subject.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Food + predicate: caused_by + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-CONVERTS_TO-nusq: - supportBatch: True useTemplating: True @@ -98011,6 +107819,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-CONVERTS_TO-nusq-rev: @@ -98033,6 +107843,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' virs-LOCATION_OF-inch: @@ -98055,6 +107867,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' comd_umls-PRODUCES-bacs_ncbigene: @@ -98077,6 +107891,8 @@ x-bte-kgs-operations: semantic: Gene predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' comd_umls-PRODUCES-bacs_ncbigene-rev: @@ -98099,6 +107915,8 @@ x-bte-kgs-operations: semantic: Disease predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-LOCATION_OF-ortf-rev: @@ -98121,6 +107939,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' antb-DISRUPTS-bpoc-rev: @@ -98143,6 +107963,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' antb-COEXISTS_WITH-nusq-rev: @@ -98165,6 +107987,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' acab-MANIFESTATION_OF-patf-rev: @@ -98187,6 +108011,8 @@ x-bte-kgs-operations: semantic: Disease predicate: has_manifestation source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-COEXISTS_WITH-orch: @@ -98209,6 +108035,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' strd-DISRUPTS-sosy-rev: @@ -98231,8 +108059,34 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' + sbst-CAUSES-cgab: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: ChemicalEntity + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:cgab AND _exists_:object.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Disease + predicate: causes + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' fngs-INTERACTS_WITH-virs: - supportBatch: True useTemplating: True @@ -98253,6 +108107,8 @@ x-bte-kgs-operations: semantic: Virus predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fngs-INTERACTS_WITH-virs-rev: @@ -98275,6 +108131,8 @@ x-bte-kgs-operations: semantic: Fungus predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-PART_OF-anab_umls: @@ -98294,11 +108152,37 @@ x-bte-kgs-operations: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' + aapp_ncbigene-PART_OF-anab_umls-rev: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: object.umls + parameters: + fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 + outputs: + - id: NCBIGene + semantic: Gene + predicate: has_part + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' celf-PRODUCES-rcpt: - supportBatch: True useTemplating: True @@ -98319,6 +108203,8 @@ x-bte-kgs-operations: semantic: Protein predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-COMPLICATES-anab: @@ -98338,11 +108224,37 @@ x-bte-kgs-operations: _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease - predicate: exacerbates + semantic: PhenotypicFeature + predicate: exacerbates_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' + patf-COMPLICATES-anab-rev: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: object.umls + parameters: + fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:COMPLICATES AND subject.semantic_type_abbreviation:patf AND + _exists_:subject.umls AND pmid_count:>3 + outputs: + - id: UMLS + semantic: PathologicalProcess + predicate: condition_exacerbated_by + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-COEXISTS_WITH-lipd: - supportBatch: True useTemplating: True @@ -98363,6 +108275,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-COEXISTS_WITH-emod-rev: @@ -98385,6 +108299,8 @@ x-bte-kgs-operations: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celc-PRODUCES-gngm: @@ -98407,6 +108323,8 @@ x-bte-kgs-operations: semantic: Gene predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-PRODUCES-gngm-rev: @@ -98429,6 +108347,8 @@ x-bte-kgs-operations: semantic: CellularComponent predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-INHIBITS-irda: @@ -98451,6 +108371,8 @@ x-bte-kgs-operations: semantic: DiagnosticAid predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -98477,6 +108399,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -98503,6 +108427,8 @@ x-bte-kgs-operations: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' aapp-STIMULATES-opco: @@ -98525,6 +108451,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -98551,6 +108479,8 @@ x-bte-kgs-operations: semantic: Cell predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -98577,6 +108507,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -98600,9 +108532,11 @@ x-bte-kgs-operations: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-INHIBITS-enzy: @@ -98625,12 +108559,38 @@ x-bte-kgs-operations: semantic: Protein predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased + anab-AFFECTS-phsf: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:phsf AND _exists_:object.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: PhysiologicalProcess + predicate: affects + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' nsba_ncbigene-DISRUPTS-ortf_umls-rev: - supportBatch: True useTemplating: True @@ -98651,6 +108611,8 @@ x-bte-kgs-operations: semantic: Gene predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' vita-AFFECTS-moft-rev: @@ -98673,6 +108635,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-same_as-horm: @@ -98695,6 +108659,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' horm-same_as-horm-rev: @@ -98717,6 +108683,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-CAUSES-phsf: @@ -98739,6 +108707,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-COMPLICATES-patf: @@ -98759,8 +108729,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PathologicalProcess - predicate: exacerbates + predicate: exacerbates_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-COMPLICATES-patf-rev: @@ -98781,8 +108753,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: is_exacerbated_by + predicate: condition_exacerbated_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell-LOCATION_OF-nnon: @@ -98805,6 +108779,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celf-AFFECTS-gngm: @@ -98827,6 +108803,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celf-AFFECTS-gngm-rev: @@ -98849,6 +108827,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-PREDISPOSES-sosy_umls-rev: @@ -98869,8 +108849,10 @@ x-bte-kgs-operations: outputs: - id: NCBIGene semantic: Gene - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' cell-LOCATION_OF-enzy: @@ -98893,6 +108875,8 @@ x-bte-kgs-operations: semantic: Protein predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-LOCATION_OF-enzy-rev: @@ -98915,6 +108899,8 @@ x-bte-kgs-operations: semantic: Cell predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-DISRUPTS-moft-rev: @@ -98937,6 +108923,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-INTERACTS_WITH-rcpt-rev: @@ -98959,6 +108947,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' mobd-COMPLICATES-dsyn-rev: @@ -98979,8 +108969,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: is_exacerbated_by + predicate: condition_exacerbated_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-STIMULATES-moft-rev: @@ -99003,6 +108995,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -99027,8 +109021,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-STIMULATES-rcpt_umls-rev: @@ -99051,6 +109047,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -99075,8 +109073,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-INHIBITS-ortf_umls-rev: @@ -99099,6 +109099,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -99122,9 +109124,11 @@ x-bte-kgs-operations: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-PRODUCES-gngm_umls-rev: @@ -99147,6 +109151,8 @@ x-bte-kgs-operations: semantic: Gene predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' patf_umls-PRODUCES-aapp_ncbigene: @@ -99169,6 +109175,8 @@ x-bte-kgs-operations: semantic: Gene predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' gngm_ncbigene-CONVERTS_TO-gngm_ncbigene-rev: @@ -99191,6 +109199,8 @@ x-bte-kgs-operations: semantic: Gene predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' eico-same_as-eico: @@ -99213,6 +109223,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' eico-same_as-eico-rev: @@ -99235,6 +109247,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-PRODUCES-opco: @@ -99257,6 +109271,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-COMPLICATES-patf: @@ -99277,8 +109293,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PathologicalProcess - predicate: exacerbates + predicate: exacerbates_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-COMPLICATES-patf-rev: @@ -99299,8 +109317,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Polypeptide - predicate: is_exacerbated_by + predicate: condition_exacerbated_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' neop-PRODUCES-rcpt: @@ -99323,6 +109343,8 @@ x-bte-kgs-operations: semantic: Protein predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' neop-PRODUCES-rcpt-rev: @@ -99345,6 +109367,8 @@ x-bte-kgs-operations: semantic: Disease predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-AFFECTS-anab: @@ -99364,9 +109388,11 @@ x-bte-kgs-operations: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-AUGMENTS-cgab: @@ -99389,6 +109415,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -99415,6 +109443,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -99441,6 +109471,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' mobd-COMPLICATES-mobd: @@ -99461,8 +109493,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: exacerbates + predicate: exacerbates_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' carb-DISRUPTS-bpoc-rev: @@ -99485,6 +109519,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' sosy-ASSOCIATED_WITH-sosy: @@ -99507,6 +109543,8 @@ x-bte-kgs-operations: semantic: PhenotypicFeature predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' sosy-ASSOCIATED_WITH-sosy-rev: @@ -99529,6 +109567,8 @@ x-bte-kgs-operations: semantic: PhenotypicFeature predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsf-ASSOCIATED_WITH-nsba: @@ -99551,6 +109591,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-AUGMENTS-comd: @@ -99573,6 +109615,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -99599,6 +109643,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' fngs-LOCATION_OF-nnon: @@ -99621,6 +109667,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nsba-STIMULATES-imft-rev: @@ -99643,6 +109691,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -99669,6 +109719,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -99695,6 +109747,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -99721,6 +109775,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bodm-INTERACTS_WITH-rcpt: @@ -99743,6 +109799,8 @@ x-bte-kgs-operations: semantic: Protein predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bodm-INTERACTS_WITH-rcpt-rev: @@ -99765,6 +109823,8 @@ x-bte-kgs-operations: semantic: Device predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-AUGMENTS-neop: @@ -99787,6 +109847,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -99813,6 +109875,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -99839,6 +109903,8 @@ x-bte-kgs-operations: semantic: Protein predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-STIMULATES-nsba: @@ -99861,6 +109927,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -99887,6 +109955,8 @@ x-bte-kgs-operations: semantic: Disease predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bdsu-LOCATION_OF-enzy: @@ -99909,6 +109979,8 @@ x-bte-kgs-operations: semantic: Protein predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bdsu-LOCATION_OF-enzy-rev: @@ -99931,6 +110003,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-CAUSES-cgab: @@ -99953,6 +110027,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PRODUCES-nnon: @@ -99975,6 +110051,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cgab-PART_OF-virs-rev: @@ -99997,6 +110075,8 @@ x-bte-kgs-operations: semantic: Disease predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-COEXISTS_WITH-elii: @@ -100019,6 +110099,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nsba-AUGMENTS-cell-rev: @@ -100041,6 +110123,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -100067,6 +110151,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nnon-PREVENTS-virs-rev: @@ -100087,8 +110173,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' enzy-STIMULATES-gngm-rev: @@ -100111,6 +110199,8 @@ x-bte-kgs-operations: semantic: Protein predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -100137,6 +110227,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' nsba-ADMINISTERED_TO-cell-rev: @@ -100159,6 +110251,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' opco-AUGMENTS-patf-rev: @@ -100181,6 +110275,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -100207,6 +110303,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' mobd-ASSOCIATED_WITH-dsyn-rev: @@ -100229,6 +110327,8 @@ x-bte-kgs-operations: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' eico-DISRUPTS-patf-rev: @@ -100251,6 +110351,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' clnd-PREVENTS-acab: @@ -100271,8 +110373,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-COEXISTS_WITH-inch: @@ -100295,6 +110399,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nsba-PART_OF-anst-rev: @@ -100317,6 +110423,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-COEXISTS_WITH-nusq-rev: @@ -100339,6 +110447,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nnon-PREDISPOSES-neop-rev: @@ -100359,8 +110469,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-DISRUPTS-tisu-rev: @@ -100383,6 +110495,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu_ncbigene-TREATS-comd_umls: @@ -100403,8 +110517,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-TREATS-sosy: @@ -100425,8 +110541,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PhenotypicFeature - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-TREATS-sosy-rev: @@ -100447,8 +110565,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: BiologicalEntity - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-ADMINISTERED_TO-emod: @@ -100471,6 +110591,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-ADMINISTERED_TO-emod-rev: @@ -100493,6 +110615,8 @@ x-bte-kgs-operations: semantic: Protein predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-INTERACTS_WITH-phsu_ncbigene: @@ -100515,6 +110639,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' opco-INTERACTS_WITH-bodm-rev: @@ -100537,6 +110663,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' medd-PREVENTS-comd: @@ -100557,8 +110685,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' mobd-PRODUCES-tisu-rev: @@ -100581,6 +110711,8 @@ x-bte-kgs-operations: semantic: Disease predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-PRECEDES-hops: @@ -100603,6 +110735,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-PRECEDES-antb: @@ -100625,6 +110759,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-COEXISTS_WITH-nsba: @@ -100647,6 +110783,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-STIMULATES-cell-rev: @@ -100669,6 +110807,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -100695,6 +110835,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -100721,6 +110863,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-same_as-medd: @@ -100743,6 +110887,8 @@ x-bte-kgs-operations: semantic: Device predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-same_as-medd-rev: @@ -100765,6 +110911,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu_ncbigene-AUGMENTS-celf_umls-rev: @@ -100787,6 +110935,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -100813,6 +110963,8 @@ x-bte-kgs-operations: semantic: Device predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bdsu-LOCATION_OF-bodm-rev: @@ -100835,6 +110987,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-PREVENTS-inpo-rev: @@ -100855,8 +111009,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PART_OF-nusq: @@ -100879,6 +111035,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PART_OF-nusq-rev: @@ -100901,6 +111059,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm_ncbigene-INTERACTS_WITH-horm_umls-rev: @@ -100923,6 +111083,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' bact-PRODUCES-hops: @@ -100945,6 +111107,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-PART_OF-fngs-rev: @@ -100967,6 +111131,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-AUGMENTS-celf: @@ -100989,6 +111155,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -101015,6 +111183,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' virs-LOCATION_OF-enzy: @@ -101037,6 +111207,8 @@ x-bte-kgs-operations: semantic: Protein predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' hops-AUGMENTS-cell-rev: @@ -101059,6 +111231,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -101085,6 +111259,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -101109,8 +111285,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: BiologicalEntity - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-PREVENTS-emod-rev: @@ -101131,8 +111309,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lbtr-MANIFESTATION_OF-inpo: @@ -101155,6 +111335,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' lbtr-MANIFESTATION_OF-inpo-rev: @@ -101177,6 +111359,8 @@ x-bte-kgs-operations: semantic: Phenomenon predicate: has_manifestation source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' ortf_umls-PRODUCES-horm_ncbigene-rev: @@ -101199,6 +111383,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' mobd-CAUSES-patf-rev: @@ -101221,6 +111407,8 @@ x-bte-kgs-operations: semantic: Disease predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-AUGMENTS-fndg: @@ -101243,6 +111431,8 @@ x-bte-kgs-operations: semantic: DiseaseOrPhenotypicFeature predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -101269,6 +111459,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -101295,6 +111487,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -101321,6 +111515,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -101347,6 +111543,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -101373,6 +111571,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch_umls-INHIBITS-bacs_ncbigene: @@ -101395,6 +111595,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: @@ -101421,6 +111623,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PRODUCES-imft: @@ -101443,6 +111647,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PRODUCES-imft-rev: @@ -101465,6 +111671,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-same_as-aapp: @@ -101487,6 +111695,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-same_as-aapp-rev: @@ -101509,6 +111719,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-AUGMENTS-dsyn: @@ -101531,6 +111743,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -101557,6 +111771,8 @@ x-bte-kgs-operations: semantic: Protein predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -101583,6 +111799,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -101609,6 +111827,8 @@ x-bte-kgs-operations: semantic: Device predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-PRECEDES-medd-rev: @@ -101631,6 +111851,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-ASSOCIATED_WITH-patf: @@ -101653,6 +111875,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-ASSOCIATED_WITH-patf-rev: @@ -101675,6 +111899,8 @@ x-bte-kgs-operations: semantic: Protein predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-COEXISTS_WITH-nusq-rev: @@ -101697,6 +111923,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' plnt-LOCATION_OF-nnon: @@ -101719,6 +111947,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' eico-AUGMENTS-mobd-rev: @@ -101741,6 +111971,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -101767,6 +111999,8 @@ x-bte-kgs-operations: semantic: Gene predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' bacs_umls-CONVERTS_TO-gngm_ncbigene-rev: @@ -101789,6 +112023,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-AFFECTS-sosy-rev: @@ -101811,6 +112047,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-INTERACTS_WITH-irda: @@ -101833,6 +112071,8 @@ x-bte-kgs-operations: semantic: DiagnosticAid predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-INTERACTS_WITH-irda-rev: @@ -101855,6 +112095,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-CAUSES-celf-rev: @@ -101877,6 +112119,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-INHIBITS-hops: @@ -101899,6 +112143,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -101925,6 +112171,8 @@ x-bte-kgs-operations: semantic: Gene predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' gngm-AUGMENTS-sosy: @@ -101947,6 +112195,8 @@ x-bte-kgs-operations: semantic: PhenotypicFeature predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -101973,6 +112223,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -101999,6 +112251,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' enzy_umls-INHIBITS-gngm_ncbigene-rev: @@ -102021,6 +112275,8 @@ x-bte-kgs-operations: semantic: Protein predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -102047,6 +112303,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-PRECEDES-topp-rev: @@ -102069,6 +112327,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-INHIBITS-inch: @@ -102091,6 +112351,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -102117,6 +112379,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' neop-PRECEDES-patf-rev: @@ -102139,6 +112403,8 @@ x-bte-kgs-operations: semantic: Disease predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc_umls-PRODUCES-gngm_ncbigene: @@ -102161,6 +112427,8 @@ x-bte-kgs-operations: semantic: Gene predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' nsba-AUGMENTS-celc-rev: @@ -102183,6 +112451,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -102207,8 +112477,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PathologicalProcess - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-COMPLICATES-dsyn: @@ -102229,8 +112501,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: exacerbates + predicate: exacerbates_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-COMPLICATES-dsyn-rev: @@ -102251,8 +112525,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: is_exacerbated_by + predicate: condition_exacerbated_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu_ncbigene-STIMULATES-bacs_umls-rev: @@ -102275,6 +112551,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -102301,6 +112579,8 @@ x-bte-kgs-operations: semantic: Disease predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' lbtr-MANIFESTATION_OF-dsyn-rev: @@ -102323,6 +112603,8 @@ x-bte-kgs-operations: semantic: Phenomenon predicate: has_manifestation source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' biof-PRODUCES-horm: @@ -102345,6 +112627,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' enzy-ASSOCIATED_WITH-patf-rev: @@ -102367,6 +112651,8 @@ x-bte-kgs-operations: semantic: Protein predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-PART_OF-aapp: @@ -102389,6 +112675,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PART_OF-aapp-rev: @@ -102411,6 +112699,8 @@ x-bte-kgs-operations: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' elii-STIMULATES-nusq-rev: @@ -102433,6 +112723,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -102459,6 +112751,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs_ncbigene-INTERACTS_WITH-bacs_umls-rev: @@ -102481,6 +112775,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' tisu-LOCATION_OF-enzy-rev: @@ -102503,6 +112799,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-same_as-topp: @@ -102525,6 +112823,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-same_as-topp-rev: @@ -102547,6 +112847,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' neop-CAUSES-patf-rev: @@ -102569,6 +112871,8 @@ x-bte-kgs-operations: semantic: Disease predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-DISRUPTS-acab: @@ -102591,6 +112895,8 @@ x-bte-kgs-operations: semantic: Disease predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-COEXISTS_WITH-phsu: @@ -102613,6 +112919,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' sosy-ASSOCIATED_WITH-neop: @@ -102635,6 +112943,8 @@ x-bte-kgs-operations: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs_ncbigene-PART_OF-gngm_umls: @@ -102657,6 +112967,8 @@ x-bte-kgs-operations: semantic: Gene predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs_ncbigene-PART_OF-gngm_umls-rev: @@ -102679,6 +112991,8 @@ x-bte-kgs-operations: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' rcpt-AFFECTS-cell: @@ -102701,6 +113015,8 @@ x-bte-kgs-operations: semantic: Cell predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-AFFECTS-cell-rev: @@ -102723,6 +113039,8 @@ x-bte-kgs-operations: semantic: Protein predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-STIMULATES-nusq_umls-rev: @@ -102745,6 +113063,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -102771,6 +113091,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: @@ -102797,6 +113119,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' drdd-TREATS-dsyn-rev: @@ -102817,8 +113141,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Device - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-AFFECTS-acab: @@ -102841,6 +113167,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' mobd-PROCESS_OF-plnt-rev: @@ -102863,6 +113191,8 @@ x-bte-kgs-operations: semantic: Disease predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-COEXISTS_WITH-horm: @@ -102885,6 +113215,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-LOCATION_OF-enzy: @@ -102907,6 +113239,8 @@ x-bte-kgs-operations: semantic: Protein predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-LOCATION_OF-enzy-rev: @@ -102929,6 +113263,8 @@ x-bte-kgs-operations: semantic: CellularComponent predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-same_as-lipd: @@ -102951,6 +113287,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' lipd-same_as-lipd-rev: @@ -102973,6 +113311,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' clnd-CAUSES-comd: @@ -102995,6 +113335,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-COEXISTS_WITH-nnon: @@ -103017,6 +113359,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-COEXISTS_WITH-irda: @@ -103039,6 +113383,8 @@ x-bte-kgs-operations: semantic: DiagnosticAid predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-COEXISTS_WITH-irda-rev: @@ -103061,6 +113407,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orgf-PRODUCES-vita: @@ -103083,6 +113431,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' emod-COEXISTS_WITH-inpo: @@ -103105,6 +113455,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-CONVERTS_TO-eico_umls: @@ -103127,6 +113479,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-LOCATION_OF-rcpt: @@ -103149,6 +113503,8 @@ x-bte-kgs-operations: semantic: Protein predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-INHIBITS-enzy-rev: @@ -103171,6 +113527,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -103197,6 +113555,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' imft-AUGMENTS-acab: @@ -103219,6 +113579,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -103245,6 +113607,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-CONVERTS_TO-aapp-rev: @@ -103267,6 +113631,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' emod-COEXISTS_WITH-emod: @@ -103289,6 +113655,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' emod-COEXISTS_WITH-emod-rev: @@ -103311,6 +113679,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bdsu-LOCATION_OF-opco: @@ -103333,6 +113703,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-COEXISTS_WITH-nnon: @@ -103355,6 +113727,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-COEXISTS_WITH-imft: @@ -103377,6 +113751,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-COEXISTS_WITH-imft-rev: @@ -103399,6 +113775,8 @@ x-bte-kgs-operations: semantic: Protein predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs_ncbigene-INHIBITS-bacs_umls-rev: @@ -103421,6 +113799,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -103444,9 +113824,11 @@ x-bte-kgs-operations: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft_ncbigene-DISRUPTS-ortf_umls-rev: @@ -103469,6 +113851,8 @@ x-bte-kgs-operations: semantic: Gene predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' fngs-LOCATION_OF-antb: @@ -103491,6 +113875,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-AFFECTS-tisu: @@ -103513,6 +113899,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bodm-INTERACTS_WITH-horm: @@ -103535,6 +113923,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs_ncbigene-COEXISTS_WITH-bacs_umls-rev: @@ -103557,6 +113947,8 @@ x-bte-kgs-operations: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' emst-LOCATION_OF-fngs-rev: @@ -103579,6 +113971,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-AFFECTS-fndg-rev: @@ -103601,6 +113995,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-PART_OF-aggp_umls-rev: @@ -103623,6 +114019,8 @@ x-bte-kgs-operations: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' neop-PRODUCES-vita: @@ -103645,6 +114043,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_umls-INHIBITS-bacs_ncbigene: @@ -103667,6 +114067,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: @@ -103693,6 +114095,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -103719,6 +114123,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-DISRUPTS-phsf: @@ -103741,6 +114147,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' enzy-PART_OF-fngs: @@ -103763,6 +114171,8 @@ x-bte-kgs-operations: semantic: Fungus predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' enzy-PART_OF-fngs-rev: @@ -103785,6 +114195,8 @@ x-bte-kgs-operations: semantic: Protein predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-PRECEDES-bacs: @@ -103807,30 +114219,10 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' - strd-CAUSES-sosy-rev: - - supportBatch: True - useTemplating: True - inputs: - - id: UMLS - semantic: PhenotypicFeature - requestBody: - body: - q: '{{ queryInputs }}' - scopes: object.umls - parameters: - fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name - size: 1000 - filter: predicate:CAUSES AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls - AND pmid_count:>3 - outputs: - - id: UMLS - semantic: SmallMolecule - predicate: caused_by - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' vita-PREVENTS-inpo-rev: - supportBatch: True useTemplating: True @@ -103849,8 +114241,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu_ncbigene-PREVENTS-comd_umls: @@ -103871,8 +114265,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Disease - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu_ncbigene-PREVENTS-comd_umls-rev: @@ -103893,8 +114289,10 @@ x-bte-kgs-operations: outputs: - id: NCBIGene semantic: Gene - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' aapp_ncbigene-PRECEDES-topp_umls: @@ -103917,6 +114315,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-PRECEDES-topp_umls-rev: @@ -103939,6 +114339,8 @@ x-bte-kgs-operations: semantic: Gene predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' patf-PREDISPOSES-patf: @@ -103959,8 +114361,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PathologicalProcess - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-PREDISPOSES-patf-rev: @@ -103981,8 +114385,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PathologicalProcess - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-CONVERTS_TO-orch: @@ -104005,6 +114411,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-CONVERTS_TO-nusq: @@ -104027,6 +114435,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-CONVERTS_TO-nusq-rev: @@ -104049,6 +114459,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-DISRUPTS-inpo: @@ -104071,6 +114483,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' virs-LOCATION_OF-lipd: @@ -104093,6 +114507,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-PRODUCES-bacs-rev: @@ -104115,6 +114531,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs_ncbigene-AFFECTS-celf_umls-rev: @@ -104137,6 +114555,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' opco-CAUSES-celf-rev: @@ -104159,6 +114579,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lbtr-MANIFESTATION_OF-orgf: @@ -104181,6 +114603,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-COMPLICATES-inpo: @@ -104201,8 +114625,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PathologicalProcess - predicate: exacerbates + predicate: exacerbates_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' diap-USES-imft-rev: @@ -104225,6 +114651,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: is_input_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-DISRUPTS-sosy-rev: @@ -104247,6 +114675,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-CONVERTS_TO-inch_umls: @@ -104269,6 +114699,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-ASSOCIATED_WITH-sosy: @@ -104291,6 +114723,8 @@ x-bte-kgs-operations: semantic: PhenotypicFeature predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-ASSOCIATED_WITH-sosy-rev: @@ -104313,6 +114747,8 @@ x-bte-kgs-operations: semantic: Protein predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-PREVENTS-inpo-rev: @@ -104333,8 +114769,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-CONVERTS_TO-opco: @@ -104357,6 +114795,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-INHIBITS-aapp: @@ -104379,6 +114819,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -104405,6 +114847,8 @@ x-bte-kgs-operations: semantic: Protein predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -104431,6 +114875,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-AUGMENTS-phsf: @@ -104453,6 +114899,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -104479,34 +114927,14 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - sosy-COEXISTS_WITH-cgab: - - supportBatch: True - useTemplating: True - inputs: - - id: UMLS - semantic: PhenotypicFeature - requestBody: - body: - q: '{{ queryInputs }}' - scopes: subject.umls - parameters: - fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name - size: 1000 - filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:cgab AND - _exists_:object.umls AND pmid_count:>3 - outputs: - - id: UMLS - semantic: Disease - predicate: coexists_with - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' horm-COEXISTS_WITH-rcpt-rev: - supportBatch: True useTemplating: True @@ -104527,6 +114955,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-INHIBITS-rcpt: @@ -104549,6 +114979,8 @@ x-bte-kgs-operations: semantic: Protein predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -104575,6 +115007,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -104601,6 +115035,8 @@ x-bte-kgs-operations: semantic: DiagnosticAid predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' plnt-LOCATION_OF-irda-rev: @@ -104623,6 +115059,8 @@ x-bte-kgs-operations: semantic: Plant predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-AUGMENTS-moft-rev: @@ -104645,6 +115083,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -104669,8 +115109,10 @@ x-bte-kgs-operations: outputs: - id: NCBIGene semantic: Gene - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' aapp_ncbigene-CONVERTS_TO-aapp_umls: @@ -104693,6 +115135,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-CONVERTS_TO-aapp_umls-rev: @@ -104715,6 +115159,8 @@ x-bte-kgs-operations: semantic: Gene predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' celc_umls-LOCATION_OF-bacs_ncbigene: @@ -104737,6 +115183,8 @@ x-bte-kgs-operations: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' bacs-AUGMENTS-biof-rev: @@ -104759,6 +115207,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -104785,6 +115235,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bact-INTERACTS_WITH-gngm-rev: @@ -104807,6 +115259,8 @@ x-bte-kgs-operations: semantic: Bacterium predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nsba-INTERACTS_WITH-imft-rev: @@ -104829,6 +115283,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PRODUCES-strd: @@ -104851,6 +115307,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inch-TREATS-patf-rev: @@ -104871,8 +115329,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' irda-DISRUPTS-orgf: @@ -104895,6 +115355,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' irda-DISRUPTS-orgf-rev: @@ -104917,6 +115379,8 @@ x-bte-kgs-operations: semantic: DiagnosticAid predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu_ncbigene-INTERACTS_WITH-aapp_ncbigene-rev: @@ -104939,6 +115403,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' elii-same_as-elii: @@ -104961,6 +115427,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' elii-same_as-elii-rev: @@ -104983,6 +115451,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-INHIBITS-opco: @@ -105005,6 +115475,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -105031,6 +115503,8 @@ x-bte-kgs-operations: semantic: Disease predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' strd-COEXISTS_WITH-imft-rev: @@ -105053,6 +115527,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-PART_OF-aapp_umls-rev: @@ -105075,6 +115551,8 @@ x-bte-kgs-operations: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' celc-PART_OF-aggp: @@ -105097,6 +115575,8 @@ x-bte-kgs-operations: semantic: Cohort predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-PART_OF-aggp-rev: @@ -105119,6 +115599,8 @@ x-bte-kgs-operations: semantic: CellularComponent predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orgf-PRODUCES-orch: @@ -105141,6 +115623,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celf-PROCESS_OF-cell: @@ -105163,6 +115647,8 @@ x-bte-kgs-operations: semantic: Cell predicate: occurs_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celf-PROCESS_OF-cell-rev: @@ -105185,6 +115671,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cgab-COEXISTS_WITH-emod-rev: @@ -105207,6 +115695,8 @@ x-bte-kgs-operations: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-COEXISTS_WITH-horm: @@ -105229,6 +115719,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cgab-COEXISTS_WITH-fndg-rev: @@ -105251,6 +115743,8 @@ x-bte-kgs-operations: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-DISRUPTS-anst: @@ -105273,6 +115767,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inch-DISRUPTS-anst-rev: @@ -105295,6 +115791,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft_ncbigene-ASSOCIATED_WITH-neop_umls-rev: @@ -105317,6 +115815,8 @@ x-bte-kgs-operations: semantic: Gene predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' strd-CONVERTS_TO-horm-rev: @@ -105339,6 +115839,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' fngs-LOCATION_OF-eico: @@ -105361,6 +115863,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bact-CAUSES-mobd: @@ -105383,6 +115887,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' clnd-CAUSES-acab: @@ -105405,6 +115911,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-INHIBITS-nusq_umls: @@ -105427,6 +115935,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -105453,6 +115963,8 @@ x-bte-kgs-operations: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -105479,6 +115991,8 @@ x-bte-kgs-operations: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' irda-DISRUPTS-celf: @@ -105501,6 +116015,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-CAUSES-biof: @@ -105523,6 +116039,8 @@ x-bte-kgs-operations: semantic: Phenomenon predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-CAUSES-biof-rev: @@ -105545,6 +116063,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-INHIBITS-fndg-rev: @@ -105567,6 +116087,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -105593,6 +116115,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -105617,8 +116141,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PhenotypicFeature - predicate: exacerbates + predicate: exacerbates_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fndg-COMPLICATES-sosy-rev: @@ -105639,8 +116165,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - predicate: is_exacerbated_by + predicate: condition_exacerbated_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-AFFECTS-patf: @@ -105663,6 +116191,8 @@ x-bte-kgs-operations: semantic: PathologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-AFFECTS-patf-rev: @@ -105685,6 +116215,8 @@ x-bte-kgs-operations: semantic: Protein predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nsba-COEXISTS_WITH-rcpt-rev: @@ -105707,6 +116239,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-COMPLICATES-orgf: @@ -105727,8 +116261,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: PhysiologicalProcess - predicate: exacerbates + predicate: exacerbates_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-COMPLICATES-orgf-rev: @@ -105749,8 +116285,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: Procedure - predicate: is_exacerbated_by + predicate: condition_exacerbated_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-COEXISTS_WITH-nusq-rev: @@ -105773,6 +116311,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-COEXISTS_WITH-antb: @@ -105795,6 +116335,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bact-LOCATION_OF-horm: @@ -105817,6 +116359,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-COMPLICATES-dsyn-rev: @@ -105837,8 +116381,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: is_exacerbated_by + predicate: condition_exacerbated_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-STIMULATES-nnon: @@ -105861,6 +116407,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -105887,6 +116435,8 @@ x-bte-kgs-operations: semantic: PhenotypicFeature predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-CAUSES-sosy-rev: @@ -105909,6 +116459,8 @@ x-bte-kgs-operations: semantic: Protein predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' medd-same_as-orch: @@ -105931,6 +116483,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' medd-same_as-orch-rev: @@ -105953,6 +116507,8 @@ x-bte-kgs-operations: semantic: Device predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-AFFECTS-mobd: @@ -105975,6 +116531,8 @@ x-bte-kgs-operations: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-DISRUPTS-cgab: @@ -105997,6 +116555,8 @@ x-bte-kgs-operations: semantic: Disease predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' horm-DISRUPTS-sosy-rev: @@ -106019,6 +116579,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-DISRUPTS-moft-rev: @@ -106041,6 +116603,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-COEXISTS_WITH-carb: @@ -106063,6 +116627,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' antb-INTERACTS_WITH-rcpt-rev: @@ -106085,6 +116651,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-PART_OF-celc-rev: @@ -106107,6 +116675,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lbtr-MANIFESTATION_OF-phsf: @@ -106129,6 +116699,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' anst-LOCATION_OF-nusq: @@ -106151,6 +116723,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' anst-LOCATION_OF-nusq-rev: @@ -106173,6 +116747,8 @@ x-bte-kgs-operations: semantic: AnatomicalEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' eico-PREVENTS-dsyn-rev: @@ -106193,8 +116769,10 @@ x-bte-kgs-operations: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' emst-PART_OF-aggp-rev: @@ -106217,6 +116795,8 @@ x-bte-kgs-operations: semantic: GrossAnatomicalStructure predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-DISRUPTS-orgf: @@ -106239,6 +116819,8 @@ x-bte-kgs-operations: semantic: PhysiologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-DISRUPTS-orgf-rev: @@ -106261,6 +116843,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' enzy-INTERACTS_WITH-irda-rev: @@ -106283,6 +116867,8 @@ x-bte-kgs-operations: semantic: Protein predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' enzy_umls-INTERACTS_WITH-aapp_ncbigene-rev: @@ -106305,8 +116891,34 @@ x-bte-kgs-operations: semantic: Protein predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' + anab-AFFECTS-bact: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:bact AND _exists_:object.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Bacterium + predicate: affects + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' anab-AFFECTS-bact-rev: - supportBatch: True useTemplating: True @@ -106324,9 +116936,11 @@ x-bte-kgs-operations: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' medd-USES-carb: @@ -106349,6 +116963,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_input source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nsba-DISRUPTS-celc-rev: @@ -106371,6 +116987,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bdsu-CAUSES-cgab: @@ -106393,6 +117011,8 @@ x-bte-kgs-operations: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' irda-INHIBITS-inch: @@ -106415,6 +117035,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -106441,6 +117063,8 @@ x-bte-kgs-operations: semantic: DiagnosticAid predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -106464,11 +117088,37 @@ x-bte-kgs-operations: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease - predicate: treats + semantic: PhenotypicFeature + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' + horm_ncbigene-TREATS-anab_umls-rev: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: object.umls + parameters: + fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.ncbigene + AND pmid_count:>3 + outputs: + - id: NCBIGene + semantic: Gene + predicate: subject_of_treatment_application_or_study_for_treatment_by + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' bdsu-LOCATION_OF-vita: - supportBatch: True useTemplating: True @@ -106489,6 +117139,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-PART_OF-fngs-rev: @@ -106511,6 +117163,8 @@ x-bte-kgs-operations: semantic: Protein predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd-COEXISTS_WITH-gngm-rev: @@ -106533,6 +117187,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-PART_OF-bact-rev: @@ -106555,6 +117211,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' irda-COEXISTS_WITH-phsu: @@ -106577,6 +117235,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-COEXISTS_WITH-eico_umls: @@ -106599,6 +117259,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' eico-DISRUPTS-dsyn-rev: @@ -106621,6 +117283,8 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-CONVERTS_TO-nusq_umls: @@ -106643,6 +117307,8 @@ x-bte-kgs-operations: semantic: NucleicAcidEntity predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-CONVERTS_TO-nusq_umls-rev: @@ -106665,6 +117331,8 @@ x-bte-kgs-operations: semantic: Gene predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' imft-INTERACTS_WITH-cell: @@ -106687,6 +117355,8 @@ x-bte-kgs-operations: semantic: Cell predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-INTERACTS_WITH-cell-rev: @@ -106709,6 +117379,8 @@ x-bte-kgs-operations: semantic: BiologicalEntity predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-same_as-topp: @@ -106731,6 +117403,8 @@ x-bte-kgs-operations: semantic: Procedure predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-same_as-topp-rev: @@ -106753,6 +117427,8 @@ x-bte-kgs-operations: semantic: Polypeptide predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' elii-AFFECTS-fndg-rev: @@ -106775,5 +117451,7 @@ x-bte-kgs-operations: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' diff --git a/semmeddb/smartapi.yaml b/semmeddb/smartapi.yaml index 6b4cd87d..28b31a1d 100644 --- a/semmeddb/smartapi.yaml +++ b/semmeddb/smartapi.yaml @@ -19,7 +19,7 @@ info: component: KP team: - Service Provider - biolink-version: "3.5.3" + biolink-version: "4.1.6" servers: - description: Production server url: https://biothings.ncats.io/semmeddb @@ -432,6 +432,7 @@ paths: - $ref: '#/components/x-bte-kgs-operations/bpoc-LOCATION_OF-orch' - $ref: '#/components/x-bte-kgs-operations/bpoc-LOCATION_OF-orch-rev' - $ref: '#/components/x-bte-kgs-operations/bpoc-LOCATION_OF-anab' + - $ref: '#/components/x-bte-kgs-operations/bpoc-LOCATION_OF-anab-rev' - $ref: '#/components/x-bte-kgs-operations/blor-LOCATION_OF-dsyn' - $ref: '#/components/x-bte-kgs-operations/phsu-TREATS-neop' - $ref: '#/components/x-bte-kgs-operations/bpoc_umls-LOCATION_OF-aapp_ncbigene' @@ -450,7 +451,6 @@ paths: - $ref: '#/components/x-bte-kgs-operations/bacs-PART_OF-celc' - $ref: '#/components/x-bte-kgs-operations/bacs-PART_OF-celc-rev' - $ref: '#/components/x-bte-kgs-operations/bpoc-LOCATION_OF-sosy' - - $ref: '#/components/x-bte-kgs-operations/bpoc-LOCATION_OF-sosy-rev' - $ref: '#/components/x-bte-kgs-operations/blor-LOCATION_OF-diap' - $ref: '#/components/x-bte-kgs-operations/blor-LOCATION_OF-diap-rev' - $ref: '#/components/x-bte-kgs-operations/blor-LOCATION_OF-bpoc' @@ -812,6 +812,7 @@ paths: - $ref: '#/components/x-bte-kgs-operations/bact-ASSOCIATED_WITH-dsyn' - $ref: '#/components/x-bte-kgs-operations/bact-ASSOCIATED_WITH-dsyn-rev' - $ref: '#/components/x-bte-kgs-operations/diap-DIAGNOSES-anab' + - $ref: '#/components/x-bte-kgs-operations/diap-DIAGNOSES-anab-rev' - $ref: '#/components/x-bte-kgs-operations/bpoc-LOCATION_OF-strd' - $ref: '#/components/x-bte-kgs-operations/imft-PART_OF-virs' - $ref: '#/components/x-bte-kgs-operations/imft-PART_OF-virs-rev' @@ -982,6 +983,7 @@ paths: - $ref: '#/components/x-bte-kgs-operations/bdsu-PART_OF-bdsu' - $ref: '#/components/x-bte-kgs-operations/bdsu-PART_OF-bdsu-rev' - $ref: '#/components/x-bte-kgs-operations/bsoj-LOCATION_OF-anab' + - $ref: '#/components/x-bte-kgs-operations/bsoj-LOCATION_OF-anab-rev' - $ref: '#/components/x-bte-kgs-operations/inch-COEXISTS_WITH-inch-rev' - $ref: '#/components/x-bte-kgs-operations/horm-INTERACTS_WITH-aapp-rev' - $ref: '#/components/x-bte-kgs-operations/topp-AFFECTS-ortf' @@ -1210,7 +1212,6 @@ paths: - $ref: '#/components/x-bte-kgs-operations/gngm-INTERACTS_WITH-gngm' - $ref: '#/components/x-bte-kgs-operations/gngm-INTERACTS_WITH-gngm-rev' - $ref: '#/components/x-bte-kgs-operations/diap-DIAGNOSES-sosy' - - $ref: '#/components/x-bte-kgs-operations/diap-DIAGNOSES-sosy-rev' - $ref: '#/components/x-bte-kgs-operations/acab-COEXISTS_WITH-dsyn-rev' - $ref: '#/components/x-bte-kgs-operations/celf-AFFECTS-neop' - $ref: '#/components/x-bte-kgs-operations/celf-AFFECTS-neop-rev' @@ -1285,7 +1286,6 @@ paths: - $ref: '#/components/x-bte-kgs-operations/imft-PART_OF-celc-rev' - $ref: '#/components/x-bte-kgs-operations/nnon-ADMINISTERED_TO-cell-rev' - $ref: '#/components/x-bte-kgs-operations/bsoj-LOCATION_OF-sosy' - - $ref: '#/components/x-bte-kgs-operations/bsoj-LOCATION_OF-sosy-rev' - $ref: '#/components/x-bte-kgs-operations/aapp-COEXISTS_WITH-aapp' - $ref: '#/components/x-bte-kgs-operations/aapp-COEXISTS_WITH-aapp-rev' - $ref: '#/components/x-bte-kgs-operations/bact-LOCATION_OF-carb' @@ -1845,6 +1845,7 @@ paths: - $ref: '#/components/x-bte-kgs-operations/aapp_ncbigene-AFFECTS-patf_umls-rev' - $ref: '#/components/x-bte-kgs-operations/bacs-PART_OF-emst' - $ref: '#/components/x-bte-kgs-operations/nnon-AUGMENTS-cell-rev' + - $ref: '#/components/x-bte-kgs-operations/anab-LOCATION_OF-neop' - $ref: '#/components/x-bte-kgs-operations/anab-LOCATION_OF-neop-rev' - $ref: '#/components/x-bte-kgs-operations/aapp_ncbigene-INHIBITS-gngm_umls-rev' - $ref: '#/components/x-bte-kgs-operations/horm-PREVENTS-dsyn-rev' @@ -1943,6 +1944,7 @@ paths: - $ref: '#/components/x-bte-kgs-operations/gngm-AFFECTS-patf' - $ref: '#/components/x-bte-kgs-operations/gngm-AFFECTS-patf-rev' - $ref: '#/components/x-bte-kgs-operations/patf-COEXISTS_WITH-anab' + - $ref: '#/components/x-bte-kgs-operations/patf-COEXISTS_WITH-anab-rev' - $ref: '#/components/x-bte-kgs-operations/phsu-AUGMENTS-bpoc-rev' - $ref: '#/components/x-bte-kgs-operations/bacs-COEXISTS_WITH-nusq' - $ref: '#/components/x-bte-kgs-operations/bacs-COEXISTS_WITH-nusq-rev' @@ -2018,6 +2020,8 @@ paths: - $ref: '#/components/x-bte-kgs-operations/aapp_ncbigene-INHIBITS-bacs_umls-rev' - $ref: '#/components/x-bte-kgs-operations/aapp-COEXISTS_WITH-horm' - $ref: '#/components/x-bte-kgs-operations/gngm-AFFECTS-dsyn' + - $ref: '#/components/x-bte-kgs-operations/sbst-CAUSES-patf' + - $ref: '#/components/x-bte-kgs-operations/sbst-CAUSES-patf-rev' - $ref: '#/components/x-bte-kgs-operations/phsu-AFFECTS-cell-rev' - $ref: '#/components/x-bte-kgs-operations/patf-AFFECTS-phsf' - $ref: '#/components/x-bte-kgs-operations/bacs_umls-COEXISTS_WITH-aapp_ncbigene' @@ -2058,6 +2062,8 @@ paths: - $ref: '#/components/x-bte-kgs-operations/orch-PREVENTS-sosy-rev' - $ref: '#/components/x-bte-kgs-operations/gngm-STIMULATES-aapp' - $ref: '#/components/x-bte-kgs-operations/gngm-STIMULATES-aapp-rev' + - $ref: '#/components/x-bte-kgs-operations/sbst-CAUSES-dsyn' + - $ref: '#/components/x-bte-kgs-operations/sbst-CAUSES-dsyn-rev' - $ref: '#/components/x-bte-kgs-operations/aapp-COEXISTS_WITH-carb' - $ref: '#/components/x-bte-kgs-operations/nnon-AUGMENTS-bpoc-rev' - $ref: '#/components/x-bte-kgs-operations/rcpt-COEXISTS_WITH-aapp' @@ -2090,6 +2096,7 @@ paths: - $ref: '#/components/x-bte-kgs-operations/cell-PRODUCES-imft' - $ref: '#/components/x-bte-kgs-operations/cell-PRODUCES-imft-rev' - $ref: '#/components/x-bte-kgs-operations/opco-CAUSES-dsyn-rev' + - $ref: '#/components/x-bte-kgs-operations/anab-PART_OF-neop' - $ref: '#/components/x-bte-kgs-operations/anab-PART_OF-neop-rev' - $ref: '#/components/x-bte-kgs-operations/rcpt-COEXISTS_WITH-bacs' - $ref: '#/components/x-bte-kgs-operations/rcpt-COEXISTS_WITH-bacs-rev' @@ -2189,6 +2196,7 @@ paths: - $ref: '#/components/x-bte-kgs-operations/bdsu-LOCATION_OF-horm' - $ref: '#/components/x-bte-kgs-operations/eico-AUGMENTS-orgf-rev' - $ref: '#/components/x-bte-kgs-operations/phsu-TREATS-anab' + - $ref: '#/components/x-bte-kgs-operations/anab-COEXISTS_WITH-cgab' - $ref: '#/components/x-bte-kgs-operations/lipd-DISRUPTS-orgf-rev' - $ref: '#/components/x-bte-kgs-operations/gngm-AFFECTS-celc' - $ref: '#/components/x-bte-kgs-operations/gngm-AFFECTS-celc-rev' @@ -2261,6 +2269,7 @@ paths: - $ref: '#/components/x-bte-kgs-operations/tisu-PART_OF-virs' - $ref: '#/components/x-bte-kgs-operations/tisu-PART_OF-virs-rev' - $ref: '#/components/x-bte-kgs-operations/inch-AUGMENTS-bpoc-rev' + - $ref: '#/components/x-bte-kgs-operations/neop-COEXISTS_WITH-anab-rev' - $ref: '#/components/x-bte-kgs-operations/elii-DISRUPTS-orgf-rev' - $ref: '#/components/x-bte-kgs-operations/gngm-AUGMENTS-neop' - $ref: '#/components/x-bte-kgs-operations/gngm-AUGMENTS-neop-rev' @@ -2410,6 +2419,8 @@ paths: - $ref: '#/components/x-bte-kgs-operations/bacs-AUGMENTS-comd-rev' - $ref: '#/components/x-bte-kgs-operations/cell-LOCATION_OF-fngs' - $ref: '#/components/x-bte-kgs-operations/cell-LOCATION_OF-fngs-rev' + - $ref: '#/components/x-bte-kgs-operations/anab-COEXISTS_WITH-anab' + - $ref: '#/components/x-bte-kgs-operations/anab-COEXISTS_WITH-anab-rev' - $ref: '#/components/x-bte-kgs-operations/gngm_ncbigene-AUGMENTS-celc_umls-rev' - $ref: '#/components/x-bte-kgs-operations/gngm_ncbigene-STIMULATES-cell_umls-rev' - $ref: '#/components/x-bte-kgs-operations/tisu_umls-PRODUCES-aapp_ncbigene-rev' @@ -2464,6 +2475,7 @@ paths: - $ref: '#/components/x-bte-kgs-operations/aapp_ncbigene-DISRUPTS-cell_umls' - $ref: '#/components/x-bte-kgs-operations/aapp_ncbigene-DISRUPTS-cell_umls-rev' - $ref: '#/components/x-bte-kgs-operations/lipd-AFFECTS-cell-rev' + - $ref: '#/components/x-bte-kgs-operations/sbst-CAUSES-inpo' - $ref: '#/components/x-bte-kgs-operations/nsba-COEXISTS_WITH-orch-rev' - $ref: '#/components/x-bte-kgs-operations/gngm-CAUSES-inpo' - $ref: '#/components/x-bte-kgs-operations/aapp-INHIBITS-carb' @@ -2514,6 +2526,7 @@ paths: - $ref: '#/components/x-bte-kgs-operations/bdsu-LOCATION_OF-imft' - $ref: '#/components/x-bte-kgs-operations/bdsu-LOCATION_OF-imft-rev' - $ref: '#/components/x-bte-kgs-operations/phsu-AFFECTS-tisu-rev' + - $ref: '#/components/x-bte-kgs-operations/anab-COEXISTS_WITH-neop' - $ref: '#/components/x-bte-kgs-operations/gngm_ncbigene-CAUSES-sosy_umls' - $ref: '#/components/x-bte-kgs-operations/gngm_ncbigene-CAUSES-sosy_umls-rev' - $ref: '#/components/x-bte-kgs-operations/orch-AFFECTS-moft-rev' @@ -2523,6 +2536,8 @@ paths: - $ref: '#/components/x-bte-kgs-operations/topp-ADMINISTERED_TO-aggp' - $ref: '#/components/x-bte-kgs-operations/topp-ADMINISTERED_TO-aggp-rev' - $ref: '#/components/x-bte-kgs-operations/gngm-COEXISTS_WITH-orch' + - $ref: '#/components/x-bte-kgs-operations/sbst-AFFECTS-moft' + - $ref: '#/components/x-bte-kgs-operations/sbst-AFFECTS-moft-rev' - $ref: '#/components/x-bte-kgs-operations/gngm-DISRUPTS-cell' - $ref: '#/components/x-bte-kgs-operations/gngm-DISRUPTS-cell-rev' - $ref: '#/components/x-bte-kgs-operations/cgab-AFFECTS-orgf-rev' @@ -2534,6 +2549,7 @@ paths: - $ref: '#/components/x-bte-kgs-operations/food-AFFECTS-celf' - $ref: '#/components/x-bte-kgs-operations/imft-PART_OF-emst' - $ref: '#/components/x-bte-kgs-operations/inch-INTERACTS_WITH-irda-rev' + - $ref: '#/components/x-bte-kgs-operations/cgab-COEXISTS_WITH-anab-rev' - $ref: '#/components/x-bte-kgs-operations/bacs-DISRUPTS-celc' - $ref: '#/components/x-bte-kgs-operations/bacs-DISRUPTS-celc-rev' - $ref: '#/components/x-bte-kgs-operations/horm-STIMULATES-aapp-rev' @@ -2654,6 +2670,7 @@ paths: - $ref: '#/components/x-bte-kgs-operations/carb-AUGMENTS-moft-rev' - $ref: '#/components/x-bte-kgs-operations/inch-AUGMENTS-fndg-rev' - $ref: '#/components/x-bte-kgs-operations/aapp-PART_OF-neop' + - $ref: '#/components/x-bte-kgs-operations/aapp-PART_OF-neop-rev' - $ref: '#/components/x-bte-kgs-operations/hops-INHIBITS-nsba-rev' - $ref: '#/components/x-bte-kgs-operations/antb_umls-INTERACTS_WITH-aapp_ncbigene-rev' - $ref: '#/components/x-bte-kgs-operations/strd-AFFECTS-orgf-rev' @@ -2671,6 +2688,7 @@ paths: - $ref: '#/components/x-bte-kgs-operations/comd-PROCESS_OF-emod-rev' - $ref: '#/components/x-bte-kgs-operations/carb-TREATS-dsyn-rev' - $ref: '#/components/x-bte-kgs-operations/cell-LOCATION_OF-horm' + - $ref: '#/components/x-bte-kgs-operations/anab-COEXISTS_WITH-patf' - $ref: '#/components/x-bte-kgs-operations/anab-COEXISTS_WITH-patf-rev' - $ref: '#/components/x-bte-kgs-operations/gngm_ncbigene-INTERACTS_WITH-hops_umls' - $ref: '#/components/x-bte-kgs-operations/horm-ASSOCIATED_WITH-sosy-rev' @@ -2717,6 +2735,7 @@ paths: - $ref: '#/components/x-bte-kgs-operations/topp-DISRUPTS-inpo-rev' - $ref: '#/components/x-bte-kgs-operations/aapp-AUGMENTS-emst' - $ref: '#/components/x-bte-kgs-operations/aapp-CAUSES-anab' + - $ref: '#/components/x-bte-kgs-operations/aapp-CAUSES-anab-rev' - $ref: '#/components/x-bte-kgs-operations/orch-CAUSES-acab' - $ref: '#/components/x-bte-kgs-operations/nsba-AFFECTS-patf-rev' - $ref: '#/components/x-bte-kgs-operations/patf-AFFECTS-mobd' @@ -2839,6 +2858,7 @@ paths: - $ref: '#/components/x-bte-kgs-operations/carb-AFFECTS-dsyn-rev' - $ref: '#/components/x-bte-kgs-operations/carb-PREDISPOSES-dsyn-rev' - $ref: '#/components/x-bte-kgs-operations/bacs-DISRUPTS-tisu' + - $ref: '#/components/x-bte-kgs-operations/sbst-CAUSES-comd' - $ref: '#/components/x-bte-kgs-operations/aapp_ncbigene-COEXISTS_WITH-lipd_umls' - $ref: '#/components/x-bte-kgs-operations/emst-PART_OF-neop-rev' - $ref: '#/components/x-bte-kgs-operations/sosy-ASSOCIATED_WITH-bact' @@ -2865,6 +2885,7 @@ paths: - $ref: '#/components/x-bte-kgs-operations/comd-MANIFESTATION_OF-inpo-rev' - $ref: '#/components/x-bte-kgs-operations/dsyn-COMPLICATES-patf' - $ref: '#/components/x-bte-kgs-operations/dsyn-COMPLICATES-patf-rev' + - $ref: '#/components/x-bte-kgs-operations/anab-AFFECTS-orgf' - $ref: '#/components/x-bte-kgs-operations/anab-AFFECTS-orgf-rev' - $ref: '#/components/x-bte-kgs-operations/horm-DISRUPTS-patf-rev' - $ref: '#/components/x-bte-kgs-operations/strd-STIMULATES-bacs-rev' @@ -2969,7 +2990,6 @@ paths: - $ref: '#/components/x-bte-kgs-operations/nnon-AFFECTS-celc-rev' - $ref: '#/components/x-bte-kgs-operations/gngm_ncbigene-DISRUPTS-patf_umls-rev' - $ref: '#/components/x-bte-kgs-operations/aapp-CAUSES-sosy' - - $ref: '#/components/x-bte-kgs-operations/aapp-CAUSES-sosy-rev' - $ref: '#/components/x-bte-kgs-operations/patf-MANIFESTATION_OF-orgf' - $ref: '#/components/x-bte-kgs-operations/patf-MANIFESTATION_OF-orgf-rev' - $ref: '#/components/x-bte-kgs-operations/aapp_ncbigene-AUGMENTS-patf_umls-rev' @@ -2983,8 +3003,10 @@ paths: - $ref: '#/components/x-bte-kgs-operations/phsu_umls-COEXISTS_WITH-gngm_ncbigene-rev' - $ref: '#/components/x-bte-kgs-operations/horm-CAUSES-sosy-rev' - $ref: '#/components/x-bte-kgs-operations/tisu-LOCATION_OF-emod-rev' + - $ref: '#/components/x-bte-kgs-operations/sbst-CAUSES-mobd' - $ref: '#/components/x-bte-kgs-operations/bact-INTERACTS_WITH-fngs' - $ref: '#/components/x-bte-kgs-operations/bact-INTERACTS_WITH-fngs-rev' + - $ref: '#/components/x-bte-kgs-operations/anab-OCCURS_IN-aggp' - $ref: '#/components/x-bte-kgs-operations/anab-OCCURS_IN-aggp-rev' - $ref: '#/components/x-bte-kgs-operations/gngm_ncbigene-AUGMENTS-fndg_umls-rev' - $ref: '#/components/x-bte-kgs-operations/rcpt_umls-INTERACTS_WITH-aapp_ncbigene' @@ -3019,6 +3041,7 @@ paths: - $ref: '#/components/x-bte-kgs-operations/virs-CAUSES-comd' - $ref: '#/components/x-bte-kgs-operations/aapp_ncbigene-AFFECTS-acab_umls' - $ref: '#/components/x-bte-kgs-operations/ortf-AFFECTS-biof-rev' + - $ref: '#/components/x-bte-kgs-operations/sbst-CAUSES-neop' - $ref: '#/components/x-bte-kgs-operations/rcpt-INHIBITS-gngm' - $ref: '#/components/x-bte-kgs-operations/rcpt-INHIBITS-gngm-rev' - $ref: '#/components/x-bte-kgs-operations/dora-PREDISPOSES-mobd' @@ -3048,6 +3071,7 @@ paths: - $ref: '#/components/x-bte-kgs-operations/horm-AFFECTS-biof-rev' - $ref: '#/components/x-bte-kgs-operations/bdsu-LOCATION_OF-strd' - $ref: '#/components/x-bte-kgs-operations/irda-CAUSES-anab' + - $ref: '#/components/x-bte-kgs-operations/irda-CAUSES-anab-rev' - $ref: '#/components/x-bte-kgs-operations/aapp_ncbigene-PART_OF-aapp_umls-rev' - $ref: '#/components/x-bte-kgs-operations/diap_umls-USES-phsu_ncbigene' - $ref: '#/components/x-bte-kgs-operations/diap_umls-USES-phsu_ncbigene-rev' @@ -3120,6 +3144,7 @@ paths: - $ref: '#/components/x-bte-kgs-operations/neop-PRODUCES-imft' - $ref: '#/components/x-bte-kgs-operations/neop-PRODUCES-imft-rev' - $ref: '#/components/x-bte-kgs-operations/sosy-DIAGNOSES-anab' + - $ref: '#/components/x-bte-kgs-operations/sosy-DIAGNOSES-anab-rev' - $ref: '#/components/x-bte-kgs-operations/food-ASSOCIATED_WITH-inpo' - $ref: '#/components/x-bte-kgs-operations/food-ASSOCIATED_WITH-inpo-rev' - $ref: '#/components/x-bte-kgs-operations/bacs-AUGMENTS-bpoc-rev' @@ -3220,6 +3245,7 @@ paths: - $ref: '#/components/x-bte-kgs-operations/rcpt-STIMULATES-gngm' - $ref: '#/components/x-bte-kgs-operations/rcpt-STIMULATES-gngm-rev' - $ref: '#/components/x-bte-kgs-operations/aapp-TREATS-anab' + - $ref: '#/components/x-bte-kgs-operations/aapp-TREATS-anab-rev' - $ref: '#/components/x-bte-kgs-operations/elii-AFFECTS-comd-rev' - $ref: '#/components/x-bte-kgs-operations/rcpt-PART_OF-virs-rev' - $ref: '#/components/x-bte-kgs-operations/imft-STIMULATES-aapp' @@ -3258,6 +3284,7 @@ paths: - $ref: '#/components/x-bte-kgs-operations/aapp_ncbigene-COEXISTS_WITH-nusq_umls-rev' - $ref: '#/components/x-bte-kgs-operations/food-CAUSES-comd' - $ref: '#/components/x-bte-kgs-operations/lipd-ASSOCIATED_WITH-sosy-rev' + - $ref: '#/components/x-bte-kgs-operations/anab-COEXISTS_WITH-acab' - $ref: '#/components/x-bte-kgs-operations/imft-COEXISTS_WITH-gngm' - $ref: '#/components/x-bte-kgs-operations/imft-COEXISTS_WITH-gngm-rev' - $ref: '#/components/x-bte-kgs-operations/sosy-DIAGNOSES-acab' @@ -3298,6 +3325,7 @@ paths: - $ref: '#/components/x-bte-kgs-operations/elii-PREDISPOSES-dsyn-rev' - $ref: '#/components/x-bte-kgs-operations/food-CAUSES-mobd' - $ref: '#/components/x-bte-kgs-operations/medd-CAUSES-anab' + - $ref: '#/components/x-bte-kgs-operations/medd-CAUSES-anab-rev' - $ref: '#/components/x-bte-kgs-operations/strd-PART_OF-fngs-rev' - $ref: '#/components/x-bte-kgs-operations/inch-AUGMENTS-biof-rev' - $ref: '#/components/x-bte-kgs-operations/gngm-PRODUCES-gngm' @@ -3346,10 +3374,12 @@ paths: - $ref: '#/components/x-bte-kgs-operations/rcpt-COEXISTS_WITH-gngm' - $ref: '#/components/x-bte-kgs-operations/rcpt-COEXISTS_WITH-gngm-rev' - $ref: '#/components/x-bte-kgs-operations/hops-INTERACTS_WITH-gngm-rev' + - $ref: '#/components/x-bte-kgs-operations/acab-COEXISTS_WITH-anab-rev' - $ref: '#/components/x-bte-kgs-operations/aapp_ncbigene-PRODUCES-aapp_ncbigene-rev' - $ref: '#/components/x-bte-kgs-operations/opco-DISRUPTS-orgf-rev' - $ref: '#/components/x-bte-kgs-operations/gngm_ncbigene-DISRUPTS-comd_umls' - $ref: '#/components/x-bte-kgs-operations/inch-PREDISPOSES-inpo-rev' + - $ref: '#/components/x-bte-kgs-operations/anab-PART_OF-fngs' - $ref: '#/components/x-bte-kgs-operations/anab-PART_OF-fngs-rev' - $ref: '#/components/x-bte-kgs-operations/gngm-DISRUPTS-dsyn' - $ref: '#/components/x-bte-kgs-operations/inch-AUGMENTS-celc-rev' @@ -3382,6 +3412,7 @@ paths: - $ref: '#/components/x-bte-kgs-operations/comd-MANIFESTATION_OF-celf' - $ref: '#/components/x-bte-kgs-operations/comd-MANIFESTATION_OF-celf-rev' - $ref: '#/components/x-bte-kgs-operations/comd-PRODUCES-imft-rev' + - $ref: '#/components/x-bte-kgs-operations/anab-AFFECTS-ortf' - $ref: '#/components/x-bte-kgs-operations/gngm-INTERACTS_WITH-carb' - $ref: '#/components/x-bte-kgs-operations/eico-CONVERTS_TO-eico' - $ref: '#/components/x-bte-kgs-operations/gngm-PRODUCES-strd' @@ -3392,6 +3423,7 @@ paths: - $ref: '#/components/x-bte-kgs-operations/imft-ADMINISTERED_TO-aggp-rev' - $ref: '#/components/x-bte-kgs-operations/bacs-DISRUPTS-sosy-rev' - $ref: '#/components/x-bte-kgs-operations/aapp_ncbigene-INTERACTS_WITH-strd_umls' + - $ref: '#/components/x-bte-kgs-operations/anab-COEXISTS_WITH-mobd' - $ref: '#/components/x-bte-kgs-operations/gngm_ncbigene-PRODUCES-bdsu_umls' - $ref: '#/components/x-bte-kgs-operations/gngm_ncbigene-PRODUCES-bdsu_umls-rev' - $ref: '#/components/x-bte-kgs-operations/aapp-INHIBITS-strd' @@ -3531,6 +3563,7 @@ paths: - $ref: '#/components/x-bte-kgs-operations/orch-DISRUPTS-mobd' - $ref: '#/components/x-bte-kgs-operations/aapp_ncbigene-INHIBITS-phsu_umls' - $ref: '#/components/x-bte-kgs-operations/topp-USES-inch' + - $ref: '#/components/x-bte-kgs-operations/anab-LOCATION_OF-bact' - $ref: '#/components/x-bte-kgs-operations/anab-LOCATION_OF-bact-rev' - $ref: '#/components/x-bte-kgs-operations/cell-PRODUCES-carb' - $ref: '#/components/x-bte-kgs-operations/diap_umls-USES-irda_ncbigene' @@ -3561,6 +3594,7 @@ paths: - $ref: '#/components/x-bte-kgs-operations/carb-DISRUPTS-patf-rev' - $ref: '#/components/x-bte-kgs-operations/opco-AUGMENTS-cell-rev' - $ref: '#/components/x-bte-kgs-operations/hops-INTERACTS_WITH-irda-rev' + - $ref: '#/components/x-bte-kgs-operations/anab-PART_OF-aggp' - $ref: '#/components/x-bte-kgs-operations/anab-PART_OF-aggp-rev' - $ref: '#/components/x-bte-kgs-operations/aapp_ncbigene-STIMULATES-imft_umls' - $ref: '#/components/x-bte-kgs-operations/aapp_ncbigene-STIMULATES-imft_umls-rev' @@ -3644,7 +3678,6 @@ paths: - $ref: '#/components/x-bte-kgs-operations/gngm-INTERACTS_WITH-rcpt' - $ref: '#/components/x-bte-kgs-operations/gngm-INTERACTS_WITH-rcpt-rev' - $ref: '#/components/x-bte-kgs-operations/aapp-TREATS-sosy' - - $ref: '#/components/x-bte-kgs-operations/aapp-TREATS-sosy-rev' - $ref: '#/components/x-bte-kgs-operations/aapp-CONVERTS_TO-aapp' - $ref: '#/components/x-bte-kgs-operations/aapp-CONVERTS_TO-aapp-rev' - $ref: '#/components/x-bte-kgs-operations/strd-AFFECTS-cell-rev' @@ -3704,6 +3737,7 @@ paths: - $ref: '#/components/x-bte-kgs-operations/imft-COEXISTS_WITH-inch' - $ref: '#/components/x-bte-kgs-operations/food-AFFECTS-mobd' - $ref: '#/components/x-bte-kgs-operations/phsu-STIMULATES-moft-rev' + - $ref: '#/components/x-bte-kgs-operations/anab-AFFECTS-celf' - $ref: '#/components/x-bte-kgs-operations/aapp-COEXISTS_WITH-eico' - $ref: '#/components/x-bte-kgs-operations/bact-LOCATION_OF-rcpt' - $ref: '#/components/x-bte-kgs-operations/bact-LOCATION_OF-rcpt-rev' @@ -3723,6 +3757,7 @@ paths: - $ref: '#/components/x-bte-kgs-operations/inch-AFFECTS-sosy-rev' - $ref: '#/components/x-bte-kgs-operations/topp-USES-horm' - $ref: '#/components/x-bte-kgs-operations/aapp-PREVENTS-anab' + - $ref: '#/components/x-bte-kgs-operations/aapp-PREVENTS-anab-rev' - $ref: '#/components/x-bte-kgs-operations/diap-USES-clnd-rev' - $ref: '#/components/x-bte-kgs-operations/neop-CAUSES-orgf-rev' - $ref: '#/components/x-bte-kgs-operations/celc-LOCATION_OF-emod' @@ -3741,7 +3776,6 @@ paths: - $ref: '#/components/x-bte-kgs-operations/gngm_ncbigene-PRODUCES-carb_umls' - $ref: '#/components/x-bte-kgs-operations/aapp-INHIBITS-fndg' - $ref: '#/components/x-bte-kgs-operations/aapp-INHIBITS-fndg-rev' - - $ref: '#/components/x-bte-kgs-operations/anab-COEXISTS_WITH-sosy-rev' - $ref: '#/components/x-bte-kgs-operations/nsba-CONVERTS_TO-orch-rev' - $ref: '#/components/x-bte-kgs-operations/nnon-CAUSES-sosy-rev' - $ref: '#/components/x-bte-kgs-operations/elii-COEXISTS_WITH-imft-rev' @@ -3778,10 +3812,12 @@ paths: - $ref: '#/components/x-bte-kgs-operations/bacs-AUGMENTS-fndg-rev' - $ref: '#/components/x-bte-kgs-operations/aapp-COEXISTS_WITH-opco' - $ref: '#/components/x-bte-kgs-operations/eico-INHIBITS-aapp-rev' + - $ref: '#/components/x-bte-kgs-operations/sbst-CAUSES-acab' - $ref: '#/components/x-bte-kgs-operations/nnon-INHIBITS-gngm-rev' - $ref: '#/components/x-bte-kgs-operations/clnd-TREATS-acab' - $ref: '#/components/x-bte-kgs-operations/orch-STIMULATES-nusq' - $ref: '#/components/x-bte-kgs-operations/orch-STIMULATES-nusq-rev' + - $ref: '#/components/x-bte-kgs-operations/anab-PART_OF-bact' - $ref: '#/components/x-bte-kgs-operations/anab-PART_OF-bact-rev' - $ref: '#/components/x-bte-kgs-operations/cell-LOCATION_OF-antb' - $ref: '#/components/x-bte-kgs-operations/bact-LOCATION_OF-opco' @@ -3817,6 +3853,7 @@ paths: - $ref: '#/components/x-bte-kgs-operations/hops-DISRUPTS-celc-rev' - $ref: '#/components/x-bte-kgs-operations/bdsu_umls-LOCATION_OF-bacs_ncbigene' - $ref: '#/components/x-bte-kgs-operations/dsyn-COMPLICATES-anab' + - $ref: '#/components/x-bte-kgs-operations/dsyn-COMPLICATES-anab-rev' - $ref: '#/components/x-bte-kgs-operations/hops-AUGMENTS-sosy-rev' - $ref: '#/components/x-bte-kgs-operations/hops-CAUSES-celf-rev' - $ref: '#/components/x-bte-kgs-operations/irda-INTERACTS_WITH-horm' @@ -3982,6 +4019,7 @@ paths: - $ref: '#/components/x-bte-kgs-operations/bacs-STIMULATES-nusq-rev' - $ref: '#/components/x-bte-kgs-operations/aapp_ncbigene-DISRUPTS-sosy_umls' - $ref: '#/components/x-bte-kgs-operations/aapp_ncbigene-DISRUPTS-sosy_umls-rev' + - $ref: '#/components/x-bte-kgs-operations/anab-LOCATION_OF-fngs' - $ref: '#/components/x-bte-kgs-operations/anab-LOCATION_OF-fngs-rev' - $ref: '#/components/x-bte-kgs-operations/bacs-CONVERTS_TO-imft' - $ref: '#/components/x-bte-kgs-operations/bacs-CONVERTS_TO-imft-rev' @@ -4042,6 +4080,7 @@ paths: - $ref: '#/components/x-bte-kgs-operations/elii-DISRUPTS-celc-rev' - $ref: '#/components/x-bte-kgs-operations/bdsu-CAUSES-neop' - $ref: '#/components/x-bte-kgs-operations/dsyn-COMPLICATES-acab' + - $ref: '#/components/x-bte-kgs-operations/strd-CAUSES-anab-rev' - $ref: '#/components/x-bte-kgs-operations/cgab-CAUSES-patf-rev' - $ref: '#/components/x-bte-kgs-operations/horm-AUGMENTS-bpoc-rev' - $ref: '#/components/x-bte-kgs-operations/inch-PREVENTS-dsyn-rev' @@ -4052,15 +4091,18 @@ paths: - $ref: '#/components/x-bte-kgs-operations/celc-LOCATION_OF-antb' - $ref: '#/components/x-bte-kgs-operations/bpoc_umls-LOCATION_OF-nsba_ncbigene' - $ref: '#/components/x-bte-kgs-operations/sosy-MANIFESTATION_OF-anab' + - $ref: '#/components/x-bte-kgs-operations/sosy-MANIFESTATION_OF-anab-rev' - $ref: '#/components/x-bte-kgs-operations/patf-COMPLICATES-patf' - $ref: '#/components/x-bte-kgs-operations/patf-COMPLICATES-patf-rev' - $ref: '#/components/x-bte-kgs-operations/aapp_umls-same_as-aapp_ncbigene' - $ref: '#/components/x-bte-kgs-operations/aapp_umls-same_as-aapp_ncbigene-rev' - $ref: '#/components/x-bte-kgs-operations/bpoc-LOCATION_OF-nnon' - $ref: '#/components/x-bte-kgs-operations/bacs-PREDISPOSES-sosy-rev' + - $ref: '#/components/x-bte-kgs-operations/anab-LOCATION_OF-virs' - $ref: '#/components/x-bte-kgs-operations/anab-LOCATION_OF-virs-rev' - $ref: '#/components/x-bte-kgs-operations/nusq-COEXISTS_WITH-elii' - $ref: '#/components/x-bte-kgs-operations/elii-DISRUPTS-cell-rev' + - $ref: '#/components/x-bte-kgs-operations/strd-TREATS-anab-rev' - $ref: '#/components/x-bte-kgs-operations/carb-DISRUPTS-cell-rev' - $ref: '#/components/x-bte-kgs-operations/antb-AFFECTS-sosy-rev' - $ref: '#/components/x-bte-kgs-operations/imft-CONVERTS_TO-gngm' @@ -4082,7 +4124,6 @@ paths: - $ref: '#/components/x-bte-kgs-operations/antb-same_as-antb-rev' - $ref: '#/components/x-bte-kgs-operations/topp-PRECEDES-horm' - $ref: '#/components/x-bte-kgs-operations/bacs_ncbigene-INTERACTS_WITH-aapp_umls-rev' - - $ref: '#/components/x-bte-kgs-operations/sosy-COEXISTS_WITH-anab' - $ref: '#/components/x-bte-kgs-operations/gngm-STIMULATES-horm' - $ref: '#/components/x-bte-kgs-operations/comd-PRECEDES-comd-rev' - $ref: '#/components/x-bte-kgs-operations/gngm-INHIBITS-inch' @@ -4200,6 +4241,7 @@ paths: - $ref: '#/components/x-bte-kgs-operations/gngm_ncbigene-COEXISTS_WITH-rcpt_umls-rev' - $ref: '#/components/x-bte-kgs-operations/celf-PRODUCES-bdsu-rev' - $ref: '#/components/x-bte-kgs-operations/rcpt-INTERACTS_WITH-phsu' + - $ref: '#/components/x-bte-kgs-operations/anab-LOCATION_OF-emod' - $ref: '#/components/x-bte-kgs-operations/anab-LOCATION_OF-emod-rev' - $ref: '#/components/x-bte-kgs-operations/aapp_ncbigene-AUGMENTS-sosy_umls' - $ref: '#/components/x-bte-kgs-operations/aapp_ncbigene-AUGMENTS-sosy_umls-rev' @@ -4221,6 +4263,7 @@ paths: - $ref: '#/components/x-bte-kgs-operations/aapp_ncbigene-CONVERTS_TO-gngm_ncbigene-rev' - $ref: '#/components/x-bte-kgs-operations/bacs-AUGMENTS-celc-rev' - $ref: '#/components/x-bte-kgs-operations/nsba-AUGMENTS-fndg-rev' + - $ref: '#/components/x-bte-kgs-operations/anab-COMPLICATES-anab' - $ref: '#/components/x-bte-kgs-operations/anab-COMPLICATES-anab-rev' - $ref: '#/components/x-bte-kgs-operations/nusq-CAUSES-comd' - $ref: '#/components/x-bte-kgs-operations/strd_umls-COEXISTS_WITH-gngm_ncbigene-rev' @@ -4265,7 +4308,6 @@ paths: - $ref: '#/components/x-bte-kgs-operations/nusq-CONVERTS_TO-bacs' - $ref: '#/components/x-bte-kgs-operations/nusq-CONVERTS_TO-bacs-rev' - $ref: '#/components/x-bte-kgs-operations/patf-COEXISTS_WITH-sosy' - - $ref: '#/components/x-bte-kgs-operations/patf-COEXISTS_WITH-sosy-rev' - $ref: '#/components/x-bte-kgs-operations/acab-MANIFESTATION_OF-celf-rev' - $ref: '#/components/x-bte-kgs-operations/irda-INHIBITS-gngm' - $ref: '#/components/x-bte-kgs-operations/irda-INHIBITS-gngm-rev' @@ -4452,6 +4494,8 @@ paths: - $ref: '#/components/x-bte-kgs-operations/carb-AFFECTS-moft-rev' - $ref: '#/components/x-bte-kgs-operations/gngm_umls-CONVERTS_TO-gngm_ncbigene' - $ref: '#/components/x-bte-kgs-operations/gngm_umls-CONVERTS_TO-gngm_ncbigene-rev' + - $ref: '#/components/x-bte-kgs-operations/sbst-CAUSES-anab' + - $ref: '#/components/x-bte-kgs-operations/sbst-CAUSES-anab-rev' - $ref: '#/components/x-bte-kgs-operations/imft-CAUSES-celf' - $ref: '#/components/x-bte-kgs-operations/imft-CAUSES-celf-rev' - $ref: '#/components/x-bte-kgs-operations/tisu-LOCATION_OF-irda-rev' @@ -4460,6 +4504,7 @@ paths: - $ref: '#/components/x-bte-kgs-operations/antb-PREDISPOSES-sosy-rev' - $ref: '#/components/x-bte-kgs-operations/lipd-COEXISTS_WITH-nusq-rev' - $ref: '#/components/x-bte-kgs-operations/gngm_ncbigene-DISRUPTS-sosy_umls-rev' + - $ref: '#/components/x-bte-kgs-operations/mobd-COEXISTS_WITH-anab-rev' - $ref: '#/components/x-bte-kgs-operations/horm_ncbigene-STIMULATES-gngm_umls-rev' - $ref: '#/components/x-bte-kgs-operations/imft-AUGMENTS-neop' - $ref: '#/components/x-bte-kgs-operations/aapp-STIMULATES-enzy' @@ -4541,6 +4586,7 @@ paths: - $ref: '#/components/x-bte-kgs-operations/virs_umls-LOCATION_OF-gngm_ncbigene' - $ref: '#/components/x-bte-kgs-operations/inch-AFFECTS-anst-rev' - $ref: '#/components/x-bte-kgs-operations/bdsu-CAUSES-anab' + - $ref: '#/components/x-bte-kgs-operations/bdsu-CAUSES-anab-rev' - $ref: '#/components/x-bte-kgs-operations/topp-USES-irda-rev' - $ref: '#/components/x-bte-kgs-operations/phsu-PART_OF-celc-rev' - $ref: '#/components/x-bte-kgs-operations/topp-DISRUPTS-emst' @@ -4673,6 +4719,7 @@ paths: - $ref: '#/components/x-bte-kgs-operations/bacs_ncbigene-COEXISTS_WITH-aapp_umls-rev' - $ref: '#/components/x-bte-kgs-operations/eico-CONVERTS_TO-gngm-rev' - $ref: '#/components/x-bte-kgs-operations/clnd-TREATS-anab' + - $ref: '#/components/x-bte-kgs-operations/clnd-TREATS-anab-rev' - $ref: '#/components/x-bte-kgs-operations/elii-AUGMENTS-sosy-rev' - $ref: '#/components/x-bte-kgs-operations/phsu_ncbigene-CAUSES-celf_umls-rev' - $ref: '#/components/x-bte-kgs-operations/carb-COEXISTS_WITH-rcpt-rev' @@ -4694,6 +4741,7 @@ paths: - $ref: '#/components/x-bte-kgs-operations/strd-COEXISTS_WITH-nusq-rev' - $ref: '#/components/x-bte-kgs-operations/carb-TREATS-sosy-rev' - $ref: '#/components/x-bte-kgs-operations/food-CAUSES-anab' + - $ref: '#/components/x-bte-kgs-operations/food-CAUSES-anab-rev' - $ref: '#/components/x-bte-kgs-operations/aapp-CONVERTS_TO-nusq' - $ref: '#/components/x-bte-kgs-operations/aapp-CONVERTS_TO-nusq-rev' - $ref: '#/components/x-bte-kgs-operations/virs-LOCATION_OF-inch' @@ -4705,11 +4753,14 @@ paths: - $ref: '#/components/x-bte-kgs-operations/acab-MANIFESTATION_OF-patf-rev' - $ref: '#/components/x-bte-kgs-operations/rcpt-COEXISTS_WITH-orch' - $ref: '#/components/x-bte-kgs-operations/strd-DISRUPTS-sosy-rev' + - $ref: '#/components/x-bte-kgs-operations/sbst-CAUSES-cgab' - $ref: '#/components/x-bte-kgs-operations/fngs-INTERACTS_WITH-virs' - $ref: '#/components/x-bte-kgs-operations/fngs-INTERACTS_WITH-virs-rev' - $ref: '#/components/x-bte-kgs-operations/aapp_ncbigene-PART_OF-anab_umls' + - $ref: '#/components/x-bte-kgs-operations/aapp_ncbigene-PART_OF-anab_umls-rev' - $ref: '#/components/x-bte-kgs-operations/celf-PRODUCES-rcpt' - $ref: '#/components/x-bte-kgs-operations/patf-COMPLICATES-anab' + - $ref: '#/components/x-bte-kgs-operations/patf-COMPLICATES-anab-rev' - $ref: '#/components/x-bte-kgs-operations/nusq-COEXISTS_WITH-lipd' - $ref: '#/components/x-bte-kgs-operations/dsyn-COEXISTS_WITH-emod-rev' - $ref: '#/components/x-bte-kgs-operations/celc-PRODUCES-gngm' @@ -4722,6 +4773,7 @@ paths: - $ref: '#/components/x-bte-kgs-operations/imft-AUGMENTS-cell-rev' - $ref: '#/components/x-bte-kgs-operations/aapp_ncbigene-CAUSES-anab_umls' - $ref: '#/components/x-bte-kgs-operations/aapp-INHIBITS-enzy' + - $ref: '#/components/x-bte-kgs-operations/anab-AFFECTS-phsf' - $ref: '#/components/x-bte-kgs-operations/nsba_ncbigene-DISRUPTS-ortf_umls-rev' - $ref: '#/components/x-bte-kgs-operations/vita-AFFECTS-moft-rev' - $ref: '#/components/x-bte-kgs-operations/horm-same_as-horm' @@ -4949,7 +5001,6 @@ paths: - $ref: '#/components/x-bte-kgs-operations/enzy-PART_OF-fngs' - $ref: '#/components/x-bte-kgs-operations/enzy-PART_OF-fngs-rev' - $ref: '#/components/x-bte-kgs-operations/topp-PRECEDES-bacs' - - $ref: '#/components/x-bte-kgs-operations/strd-CAUSES-sosy-rev' - $ref: '#/components/x-bte-kgs-operations/vita-PREVENTS-inpo-rev' - $ref: '#/components/x-bte-kgs-operations/phsu_ncbigene-PREVENTS-comd_umls' - $ref: '#/components/x-bte-kgs-operations/phsu_ncbigene-PREVENTS-comd_umls-rev' @@ -4979,7 +5030,6 @@ paths: - $ref: '#/components/x-bte-kgs-operations/nnon-AFFECTS-moft-rev' - $ref: '#/components/x-bte-kgs-operations/imft-AUGMENTS-phsf' - $ref: '#/components/x-bte-kgs-operations/nnon-AUGMENTS-sosy-rev' - - $ref: '#/components/x-bte-kgs-operations/sosy-COEXISTS_WITH-cgab' - $ref: '#/components/x-bte-kgs-operations/horm-COEXISTS_WITH-rcpt-rev' - $ref: '#/components/x-bte-kgs-operations/nusq-INHIBITS-rcpt' - $ref: '#/components/x-bte-kgs-operations/nusq-INHIBITS-rcpt-rev' @@ -5060,6 +5110,7 @@ paths: - $ref: '#/components/x-bte-kgs-operations/nusq-DISRUPTS-orgf-rev' - $ref: '#/components/x-bte-kgs-operations/enzy-INTERACTS_WITH-irda-rev' - $ref: '#/components/x-bte-kgs-operations/enzy_umls-INTERACTS_WITH-aapp_ncbigene-rev' + - $ref: '#/components/x-bte-kgs-operations/anab-AFFECTS-bact' - $ref: '#/components/x-bte-kgs-operations/anab-AFFECTS-bact-rev' - $ref: '#/components/x-bte-kgs-operations/medd-USES-carb' - $ref: '#/components/x-bte-kgs-operations/nsba-DISRUPTS-celc-rev' @@ -5067,6 +5118,7 @@ paths: - $ref: '#/components/x-bte-kgs-operations/irda-INHIBITS-inch' - $ref: '#/components/x-bte-kgs-operations/irda-INHIBITS-inch-rev' - $ref: '#/components/x-bte-kgs-operations/horm_ncbigene-TREATS-anab_umls' + - $ref: '#/components/x-bte-kgs-operations/horm_ncbigene-TREATS-anab_umls-rev' - $ref: '#/components/x-bte-kgs-operations/bdsu-LOCATION_OF-vita' - $ref: '#/components/x-bte-kgs-operations/rcpt-PART_OF-fngs-rev' - $ref: '#/components/x-bte-kgs-operations/strd-COEXISTS_WITH-gngm-rev' @@ -5406,6 +5458,8 @@ components: semantic: Disease predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-LOCATION_OF-neop-rev: @@ -5428,6 +5482,8 @@ components: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bdsu-LOCATION_OF-aapp: @@ -5450,6 +5506,8 @@ components: semantic: Polypeptide predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bdsu-LOCATION_OF-aapp-rev: @@ -5472,6 +5530,8 @@ components: semantic: AnatomicalEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-LOCATION_OF-patf: @@ -5494,6 +5554,8 @@ components: semantic: PathologicalProcess predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-LOCATION_OF-patf-rev: @@ -5516,6 +5578,8 @@ components: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-TREATS-dsyn: @@ -5536,8 +5600,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-TREATS-dsyn-rev: @@ -5558,8 +5624,10 @@ components: outputs: - id: UMLS semantic: Procedure - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-TREATS-neop: @@ -5580,8 +5648,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-LOCATION_OF-dsyn: @@ -5604,6 +5674,8 @@ components: semantic: Disease predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-LOCATION_OF-fndg: @@ -5626,6 +5698,8 @@ components: semantic: DiseaseOrPhenotypicFeature predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-LOCATION_OF-fndg-rev: @@ -5648,6 +5722,8 @@ components: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell-PART_OF-bpoc: @@ -5670,6 +5746,8 @@ components: semantic: GrossAnatomicalStructure predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-PART_OF-bpoc-rev: @@ -5692,6 +5770,8 @@ components: semantic: Cell predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-LOCATION_OF-aapp: @@ -5714,6 +5794,8 @@ components: semantic: Polypeptide predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-LOCATION_OF-aapp-rev: @@ -5736,6 +5818,8 @@ components: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-TREATS-dsyn: @@ -5756,8 +5840,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-TREATS-dsyn-rev: @@ -5778,8 +5864,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-PART_OF-bpoc: @@ -5802,6 +5890,8 @@ components: semantic: GrossAnatomicalStructure predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-PART_OF-bpoc-rev: @@ -5824,6 +5914,8 @@ components: semantic: GrossAnatomicalStructure predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell-LOCATION_OF-aapp: @@ -5846,6 +5938,8 @@ components: semantic: Polypeptide predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-LOCATION_OF-aapp-rev: @@ -5868,6 +5962,8 @@ components: semantic: Cell predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-USES-phsu: @@ -5890,6 +5986,8 @@ components: semantic: SmallMolecule predicate: has_input source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-USES-phsu-rev: @@ -5912,6 +6010,8 @@ components: semantic: Procedure predicate: is_input_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-LOCATION_OF-diap: @@ -5934,6 +6034,8 @@ components: semantic: Procedure predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-LOCATION_OF-diap-rev: @@ -5956,6 +6058,8 @@ components: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-LOCATION_OF-inpo: @@ -5978,6 +6082,8 @@ components: semantic: PathologicalProcess predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' tisu-PART_OF-bpoc-rev: @@ -6000,6 +6106,8 @@ components: semantic: GrossAnatomicalStructure predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bdsu-LOCATION_OF-bacs: @@ -6022,6 +6130,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bdsu-LOCATION_OF-bacs-rev: @@ -6044,6 +6154,8 @@ components: semantic: AnatomicalEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell-LOCATION_OF-celf: @@ -6066,6 +6178,8 @@ components: semantic: PhysiologicalProcess predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-LOCATION_OF-celf-rev: @@ -6088,6 +6202,8 @@ components: semantic: Cell predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-PART_OF-aapp: @@ -6110,6 +6226,8 @@ components: semantic: Polypeptide predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-PART_OF-aapp-rev: @@ -6132,6 +6250,8 @@ components: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-USES-medd: @@ -6154,6 +6274,8 @@ components: semantic: Device predicate: has_input source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-USES-medd-rev: @@ -6176,6 +6298,8 @@ components: semantic: Procedure predicate: is_input_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-ASSOCIATED_WITH-dsyn: @@ -6198,6 +6322,8 @@ components: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-ASSOCIATED_WITH-dsyn-rev: @@ -6220,6 +6346,8 @@ components: semantic: Polypeptide predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-USES-aapp: @@ -6242,6 +6370,8 @@ components: semantic: Polypeptide predicate: has_input source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-USES-aapp-rev: @@ -6264,6 +6394,8 @@ components: semantic: Procedure predicate: is_input_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' tisu-LOCATION_OF-aapp-rev: @@ -6286,6 +6418,8 @@ components: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-INTERACTS_WITH-aapp: @@ -6308,6 +6442,8 @@ components: semantic: Polypeptide predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-INTERACTS_WITH-aapp-rev: @@ -6330,6 +6466,8 @@ components: semantic: Polypeptide predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-COEXISTS_WITH-dsyn: @@ -6352,6 +6490,8 @@ components: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-COEXISTS_WITH-dsyn-rev: @@ -6374,6 +6514,8 @@ components: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-STIMULATES-gngm: @@ -6396,6 +6538,8 @@ components: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -6422,6 +6566,8 @@ components: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -6448,6 +6594,8 @@ components: semantic: Polypeptide predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-LOCATION_OF-aapp-rev: @@ -6470,6 +6618,8 @@ components: semantic: CellularComponent predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bdsu-LOCATION_OF-orch: @@ -6492,6 +6642,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PART_OF-celc: @@ -6514,6 +6666,8 @@ components: semantic: CellularComponent predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PART_OF-celc-rev: @@ -6536,6 +6690,8 @@ components: semantic: Polypeptide predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-PRECEDES-topp: @@ -6558,6 +6714,8 @@ components: semantic: Procedure predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-PRECEDES-topp-rev: @@ -6580,6 +6738,8 @@ components: semantic: Procedure predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' blor-LOCATION_OF-neop: @@ -6602,6 +6762,8 @@ components: semantic: Disease predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' blor-LOCATION_OF-neop-rev: @@ -6624,6 +6786,8 @@ components: semantic: AnatomicalEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bdsu_umls-LOCATION_OF-aapp_ncbigene: @@ -6646,6 +6810,8 @@ components: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' bdsu_umls-LOCATION_OF-aapp_ncbigene-rev: @@ -6668,6 +6834,8 @@ components: semantic: AnatomicalEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' diap-DIAGNOSES-dsyn: @@ -6690,6 +6858,8 @@ components: semantic: Disease predicate: diagnoses source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' diap-DIAGNOSES-dsyn-rev: @@ -6712,6 +6882,8 @@ components: semantic: Procedure predicate: is_diagnosed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PART_OF-bpoc: @@ -6734,6 +6906,8 @@ components: semantic: GrossAnatomicalStructure predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PART_OF-bpoc-rev: @@ -6756,6 +6930,8 @@ components: semantic: Polypeptide predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-ASSOCIATED_WITH-neop: @@ -6778,6 +6954,8 @@ components: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-LOCATION_OF-orch: @@ -6800,6 +6978,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-LOCATION_OF-orch-rev: @@ -6822,6 +7002,8 @@ components: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-LOCATION_OF-anab: @@ -6841,11 +7023,37 @@ components: _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' + bpoc-LOCATION_OF-anab-rev: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: object.umls + parameters: + fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc AND + _exists_:subject.umls AND pmid_count:>3 + outputs: + - id: UMLS + semantic: GrossAnatomicalStructure + predicate: located_in + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' blor-LOCATION_OF-dsyn: - supportBatch: True useTemplating: True @@ -6866,6 +7074,8 @@ components: semantic: Disease predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-TREATS-neop: @@ -6886,8 +7096,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc_umls-LOCATION_OF-aapp_ncbigene: @@ -6910,6 +7122,8 @@ components: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' bpoc_umls-LOCATION_OF-aapp_ncbigene-rev: @@ -6932,6 +7146,8 @@ components: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell_umls-LOCATION_OF-aapp_ncbigene: @@ -6954,6 +7170,8 @@ components: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' cell_umls-LOCATION_OF-aapp_ncbigene-rev: @@ -6976,6 +7194,8 @@ components: semantic: Cell predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celc-PART_OF-cell: @@ -6998,6 +7218,8 @@ components: semantic: Cell predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-PART_OF-cell-rev: @@ -7020,6 +7242,8 @@ components: semantic: CellularComponent predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell-PRODUCES-aapp: @@ -7042,6 +7266,8 @@ components: semantic: Polypeptide predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-PRODUCES-aapp-rev: @@ -7064,6 +7290,8 @@ components: semantic: Cell predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-LOCATION_OF-bacs: @@ -7086,6 +7314,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-CAUSES-dsyn: @@ -7108,6 +7338,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-CAUSES-dsyn-rev: @@ -7130,6 +7362,8 @@ components: semantic: Disease predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-AFFECTS-celf: @@ -7152,6 +7386,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AFFECTS-celf-rev: @@ -7174,6 +7410,8 @@ components: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-PART_OF-celc: @@ -7196,6 +7434,8 @@ components: semantic: CellularComponent predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-PART_OF-celc-rev: @@ -7218,6 +7458,8 @@ components: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-LOCATION_OF-sosy: @@ -7240,30 +7482,10 @@ components: semantic: PhenotypicFeature predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' - bpoc-LOCATION_OF-sosy-rev: - - supportBatch: True - useTemplating: True - inputs: - - id: UMLS - semantic: PhenotypicFeature - requestBody: - body: - q: '{{ queryInputs }}' - scopes: object.umls - parameters: - fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name - size: 1000 - filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bpoc AND - _exists_:subject.umls AND pmid_count:>3 - outputs: - - id: UMLS - semantic: GrossAnatomicalStructure - predicate: located_in - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' blor-LOCATION_OF-diap: - supportBatch: True useTemplating: True @@ -7284,6 +7506,8 @@ components: semantic: Procedure predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' blor-LOCATION_OF-diap-rev: @@ -7306,6 +7530,8 @@ components: semantic: AnatomicalEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' blor-LOCATION_OF-bpoc: @@ -7328,6 +7554,8 @@ components: semantic: GrossAnatomicalStructure predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' blor-LOCATION_OF-bpoc-rev: @@ -7350,6 +7578,8 @@ components: semantic: AnatomicalEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' tisu-LOCATION_OF-topp: @@ -7372,6 +7602,8 @@ components: semantic: Procedure predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' tisu-LOCATION_OF-topp-rev: @@ -7394,6 +7626,8 @@ components: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' patf-COEXISTS_WITH-dsyn: @@ -7416,6 +7650,8 @@ components: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-COEXISTS_WITH-dsyn-rev: @@ -7438,6 +7674,8 @@ components: semantic: PathologicalProcess predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celc-PART_OF-bpoc: @@ -7460,6 +7698,8 @@ components: semantic: GrossAnatomicalStructure predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-PART_OF-bpoc-rev: @@ -7482,6 +7722,8 @@ components: semantic: CellularComponent predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-ASSOCIATED_WITH-neop: @@ -7504,6 +7746,8 @@ components: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-ASSOCIATED_WITH-neop-rev: @@ -7526,6 +7770,8 @@ components: semantic: Gene predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' tisu-PART_OF-neop: @@ -7548,6 +7794,8 @@ components: semantic: Disease predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' tisu-PART_OF-neop-rev: @@ -7570,6 +7818,8 @@ components: semantic: GrossAnatomicalStructure predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' moft-PROCESS_OF-cell: @@ -7592,6 +7842,8 @@ components: semantic: Cell predicate: occurs_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' moft-PROCESS_OF-cell-rev: @@ -7614,6 +7866,8 @@ components: semantic: MolecularActivity predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-LOCATION_OF-acab: @@ -7636,6 +7890,8 @@ components: semantic: Disease predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-INHIBITS-aapp: @@ -7658,6 +7914,8 @@ components: semantic: Polypeptide predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -7684,6 +7942,8 @@ components: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -7708,8 +7968,10 @@ components: outputs: - id: UMLS semantic: PathologicalProcess - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-TREATS-patf-rev: @@ -7730,8 +7992,10 @@ components: outputs: - id: UMLS semantic: Procedure - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' diap-DIAGNOSES-neop: @@ -7754,6 +8018,8 @@ components: semantic: Disease predicate: diagnoses source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fndg-COEXISTS_WITH-dsyn: @@ -7776,6 +8042,8 @@ components: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fndg-COEXISTS_WITH-dsyn-rev: @@ -7798,6 +8066,8 @@ components: semantic: DiseaseOrPhenotypicFeature predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' blor-LOCATION_OF-fndg: @@ -7820,6 +8090,8 @@ components: semantic: DiseaseOrPhenotypicFeature predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' blor-LOCATION_OF-fndg-rev: @@ -7842,6 +8114,8 @@ components: semantic: AnatomicalEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' plnt-LOCATION_OF-aapp: @@ -7864,6 +8138,8 @@ components: semantic: Polypeptide predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' plnt-LOCATION_OF-aapp-rev: @@ -7886,6 +8162,8 @@ components: semantic: Plant predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs_umls-PART_OF-aapp_ncbigene: @@ -7908,6 +8186,8 @@ components: semantic: Gene predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' bacs_umls-PART_OF-aapp_ncbigene-rev: @@ -7930,6 +8210,8 @@ components: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PART_OF-cell: @@ -7952,6 +8234,8 @@ components: semantic: Cell predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PART_OF-cell-rev: @@ -7974,6 +8258,8 @@ components: semantic: Polypeptide predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-INTERACTS_WITH-cell: @@ -7996,6 +8282,8 @@ components: semantic: Cell predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-INTERACTS_WITH-cell-rev: @@ -8018,6 +8306,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-LOCATION_OF-cgab: @@ -8040,6 +8330,8 @@ components: semantic: Disease predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-STIMULATES-cell: @@ -8062,6 +8354,8 @@ components: semantic: Cell predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -8088,6 +8382,8 @@ components: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -8114,6 +8410,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' plnt-LOCATION_OF-orch-rev: @@ -8136,6 +8434,8 @@ components: semantic: Plant predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celf-PROCESS_OF-neop: @@ -8158,6 +8458,8 @@ components: semantic: Disease predicate: occurs_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celf-PROCESS_OF-neop-rev: @@ -8180,6 +8482,8 @@ components: semantic: PhysiologicalProcess predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-INHIBITS-gngm: @@ -8202,6 +8506,8 @@ components: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -8228,6 +8534,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -8254,6 +8562,8 @@ components: semantic: SmallMolecule predicate: has_input source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' medd-USES-phsu-rev: @@ -8276,6 +8586,8 @@ components: semantic: Device predicate: is_input_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' blor-LOCATION_OF-inpo: @@ -8298,6 +8610,8 @@ components: semantic: PathologicalProcess predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' blor-LOCATION_OF-inpo-rev: @@ -8320,6 +8634,8 @@ components: semantic: AnatomicalEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' neop-COEXISTS_WITH-neop: @@ -8342,6 +8658,8 @@ components: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' neop-COEXISTS_WITH-neop-rev: @@ -8364,6 +8682,8 @@ components: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell-LOCATION_OF-neop: @@ -8386,6 +8706,8 @@ components: semantic: Disease predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-LOCATION_OF-neop-rev: @@ -8408,6 +8730,8 @@ components: semantic: Cell predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-INTERACTS_WITH-bacs: @@ -8430,6 +8754,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-INTERACTS_WITH-bacs-rev: @@ -8452,6 +8778,8 @@ components: semantic: Polypeptide predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PART_OF-virs: @@ -8474,6 +8802,8 @@ components: semantic: Virus predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PART_OF-virs-rev: @@ -8496,6 +8826,8 @@ components: semantic: Polypeptide predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsf-PROCESS_OF-bpoc: @@ -8518,6 +8850,8 @@ components: semantic: GrossAnatomicalStructure predicate: occurs_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsf-PROCESS_OF-bpoc-rev: @@ -8540,6 +8874,8 @@ components: semantic: PhysiologicalProcess predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-PART_OF-bpoc: @@ -8562,6 +8898,8 @@ components: semantic: GrossAnatomicalStructure predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-PART_OF-bpoc-rev: @@ -8584,6 +8922,8 @@ components: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-CAUSES-celf: @@ -8606,6 +8946,8 @@ components: semantic: PhysiologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-CAUSES-celf-rev: @@ -8628,6 +8970,8 @@ components: semantic: Gene predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' diap-DIAGNOSES-fndg: @@ -8650,6 +8994,8 @@ components: semantic: DiseaseOrPhenotypicFeature predicate: diagnoses source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' diap-DIAGNOSES-fndg-rev: @@ -8672,6 +9018,8 @@ components: semantic: Procedure predicate: is_diagnosed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bact-CAUSES-dsyn: @@ -8694,6 +9042,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bact-CAUSES-dsyn-rev: @@ -8716,6 +9066,8 @@ components: semantic: Bacterium predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celc-LOCATION_OF-moft: @@ -8738,6 +9090,8 @@ components: semantic: MolecularActivity predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-LOCATION_OF-moft-rev: @@ -8760,6 +9114,8 @@ components: semantic: CellularComponent predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' medd-USES-medd: @@ -8782,6 +9138,8 @@ components: semantic: Device predicate: has_input source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' medd-USES-medd-rev: @@ -8804,6 +9162,8 @@ components: semantic: Device predicate: is_input_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-TREATS-neop-rev: @@ -8824,8 +9184,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' antb-TREATS-dsyn-rev: @@ -8846,8 +9208,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celc-PART_OF-celc: @@ -8870,6 +9234,8 @@ components: semantic: CellularComponent predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-PART_OF-celc-rev: @@ -8892,6 +9258,8 @@ components: semantic: CellularComponent predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-AFFECTS-orgf: @@ -8914,6 +9282,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_umls-STIMULATES-gngm_ncbigene: @@ -8936,6 +9306,8 @@ components: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: @@ -8962,6 +9334,8 @@ components: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -8988,6 +9362,8 @@ components: semantic: GrossAnatomicalStructure predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' tisu-LOCATION_OF-orgf: @@ -9010,6 +9386,8 @@ components: semantic: PhysiologicalProcess predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' tisu-LOCATION_OF-orgf-rev: @@ -9032,6 +9410,8 @@ components: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-PROCESS_OF-aggp: @@ -9054,6 +9434,8 @@ components: semantic: Cohort predicate: occurs_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-PROCESS_OF-aggp-rev: @@ -9076,6 +9458,8 @@ components: semantic: Disease predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-TREATS-inpo: @@ -9096,8 +9480,10 @@ components: outputs: - id: UMLS semantic: PathologicalProcess - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' diap-DIAGNOSES-patf: @@ -9120,6 +9506,8 @@ components: semantic: PathologicalProcess predicate: diagnoses source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' diap-DIAGNOSES-patf-rev: @@ -9142,6 +9530,8 @@ components: semantic: Procedure predicate: is_diagnosed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' tisu-LOCATION_OF-neop-rev: @@ -9164,6 +9554,8 @@ components: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-ASSOCIATED_WITH-dsyn: @@ -9186,6 +9578,8 @@ components: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-ASSOCIATED_WITH-dsyn-rev: @@ -9208,6 +9602,8 @@ components: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bact-LOCATION_OF-aapp: @@ -9230,6 +9626,8 @@ components: semantic: Polypeptide predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bact-LOCATION_OF-aapp-rev: @@ -9252,6 +9650,8 @@ components: semantic: Bacterium predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-PREDISPOSES-dsyn: @@ -9272,8 +9672,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-PREDISPOSES-dsyn-rev: @@ -9294,8 +9696,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-CAUSES-celf: @@ -9318,6 +9722,8 @@ components: semantic: PhysiologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-CAUSES-celf-rev: @@ -9340,6 +9746,8 @@ components: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' sosy-ASSOCIATED_WITH-dsyn: @@ -9362,6 +9770,8 @@ components: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' sosy-ASSOCIATED_WITH-dsyn-rev: @@ -9384,6 +9794,8 @@ components: semantic: PhenotypicFeature predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' tisu_umls-LOCATION_OF-aapp_ncbigene-rev: @@ -9406,6 +9818,8 @@ components: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orgf-ASSOCIATED_WITH-dsyn: @@ -9428,6 +9842,8 @@ components: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orgf-ASSOCIATED_WITH-dsyn-rev: @@ -9450,6 +9866,8 @@ components: semantic: PhysiologicalProcess predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' tisu-LOCATION_OF-orch-rev: @@ -9472,6 +9890,8 @@ components: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-STIMULATES-gngm: @@ -9494,6 +9914,8 @@ components: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -9520,6 +9942,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -9546,6 +9970,8 @@ components: semantic: Bacterium predicate: occurs_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-PROCESS_OF-bact-rev: @@ -9568,6 +9994,8 @@ components: semantic: Disease predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-COEXISTS_WITH-gngm: @@ -9590,6 +10018,8 @@ components: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-COEXISTS_WITH-gngm-rev: @@ -9612,6 +10042,8 @@ components: semantic: Polypeptide predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell-LOCATION_OF-orch: @@ -9634,6 +10066,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-LOCATION_OF-orch-rev: @@ -9656,6 +10090,8 @@ components: semantic: Cell predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-TREATS-sosy: @@ -9676,8 +10112,10 @@ components: outputs: - id: UMLS semantic: PhenotypicFeature - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-TREATS-sosy-rev: @@ -9698,8 +10136,10 @@ components: outputs: - id: UMLS semantic: Procedure - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PART_OF-bact: @@ -9722,6 +10162,8 @@ components: semantic: Bacterium predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PART_OF-bact-rev: @@ -9744,6 +10186,8 @@ components: semantic: Polypeptide predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-COEXISTS_WITH-fndg: @@ -9766,6 +10210,8 @@ components: semantic: DiseaseOrPhenotypicFeature predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-COEXISTS_WITH-fndg-rev: @@ -9788,6 +10234,8 @@ components: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell-PART_OF-tisu: @@ -9810,6 +10258,8 @@ components: semantic: GrossAnatomicalStructure predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' horm-TREATS-dsyn-rev: @@ -9830,8 +10280,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-PRECEDES-diap: @@ -9854,6 +10306,8 @@ components: semantic: Procedure predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc_umls-LOCATION_OF-aapp_ncbigene: @@ -9876,6 +10330,8 @@ components: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' celc_umls-LOCATION_OF-aapp_ncbigene-rev: @@ -9898,6 +10354,8 @@ components: semantic: CellularComponent predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-STIMULATES-moft: @@ -9920,6 +10378,8 @@ components: semantic: MolecularActivity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -9946,6 +10406,8 @@ components: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -9972,6 +10434,8 @@ components: semantic: AnatomicalEntity predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PART_OF-blor-rev: @@ -9994,6 +10458,8 @@ components: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-AFFECTS-moft: @@ -10016,6 +10482,8 @@ components: semantic: MolecularActivity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AFFECTS-moft-rev: @@ -10038,6 +10506,8 @@ components: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-CAUSES-dsyn: @@ -10060,6 +10530,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-CAUSES-dsyn-rev: @@ -10082,6 +10554,8 @@ components: semantic: Polypeptide predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-INTERACTS_WITH-aapp: @@ -10104,6 +10578,8 @@ components: semantic: Polypeptide predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-INTERACTS_WITH-aapp-rev: @@ -10126,6 +10602,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-CAUSES-patf: @@ -10148,6 +10626,8 @@ components: semantic: PathologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-CAUSES-patf-rev: @@ -10170,6 +10650,8 @@ components: semantic: Disease predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' diap-USES-medd-rev: @@ -10192,6 +10674,8 @@ components: semantic: Procedure predicate: is_input_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-TREATS-mobd: @@ -10212,8 +10696,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bsoj-PART_OF-bpoc: @@ -10236,6 +10722,8 @@ components: semantic: GrossAnatomicalStructure predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bsoj-PART_OF-bpoc-rev: @@ -10258,6 +10746,8 @@ components: semantic: AnatomicalEntity predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp_umls-USES-aapp_ncbigene: @@ -10280,6 +10770,8 @@ components: semantic: Gene predicate: has_input source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' topp_umls-USES-aapp_ncbigene-rev: @@ -10302,6 +10794,8 @@ components: semantic: Procedure predicate: is_input_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell-INTERACTS_WITH-cell: @@ -10324,6 +10818,8 @@ components: semantic: Cell predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-INTERACTS_WITH-cell-rev: @@ -10346,6 +10842,8 @@ components: semantic: Cell predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' medd-TREATS-dsyn: @@ -10366,8 +10864,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' medd-TREATS-dsyn-rev: @@ -10388,8 +10888,10 @@ components: outputs: - id: UMLS semantic: Device - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-ASSOCIATED_WITH-patf: @@ -10412,6 +10914,8 @@ components: semantic: PathologicalProcess predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-ASSOCIATED_WITH-patf-rev: @@ -10434,6 +10938,8 @@ components: semantic: Polypeptide predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-ASSOCIATED_WITH-neop_umls: @@ -10456,6 +10962,8 @@ components: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-ASSOCIATED_WITH-neop_umls-rev: @@ -10478,6 +10986,8 @@ components: semantic: Gene predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' bdsu-PART_OF-bpoc-rev: @@ -10500,6 +11010,8 @@ components: semantic: AnatomicalEntity predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-CAUSES-orgf: @@ -10522,6 +11034,8 @@ components: semantic: PhysiologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-CAUSES-orgf-rev: @@ -10544,6 +11058,8 @@ components: semantic: Disease predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' moft-PROCESS_OF-tisu: @@ -10566,6 +11082,8 @@ components: semantic: GrossAnatomicalStructure predicate: occurs_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' moft-PROCESS_OF-tisu-rev: @@ -10588,6 +11106,8 @@ components: semantic: MolecularActivity predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-PART_OF-virs: @@ -10610,6 +11130,8 @@ components: semantic: Virus predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-PART_OF-virs-rev: @@ -10632,6 +11154,8 @@ components: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' tisu-LOCATION_OF-ortf: @@ -10654,6 +11178,8 @@ components: semantic: PhysiologicalProcess predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-PART_OF-bact: @@ -10676,6 +11202,8 @@ components: semantic: Bacterium predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-PART_OF-bact-rev: @@ -10698,6 +11226,8 @@ components: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-ASSOCIATED_WITH-neop: @@ -10720,6 +11250,8 @@ components: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bsoj-LOCATION_OF-neop-rev: @@ -10742,6 +11274,8 @@ components: semantic: AnatomicalEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-PART_OF-cell: @@ -10764,6 +11298,8 @@ components: semantic: Cell predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-PART_OF-cell-rev: @@ -10786,6 +11322,8 @@ components: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-CAUSES-dsyn: @@ -10808,6 +11346,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-CAUSES-dsyn-rev: @@ -10830,6 +11370,8 @@ components: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-AUGMENTS-celf: @@ -10852,6 +11394,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -10878,6 +11422,8 @@ components: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -10904,6 +11450,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' virs-CAUSES-dsyn-rev: @@ -10926,6 +11474,8 @@ components: semantic: Virus predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_umls-INTERACTS_WITH-aapp_ncbigene: @@ -10948,6 +11498,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' aapp_umls-INTERACTS_WITH-aapp_ncbigene-rev: @@ -10970,6 +11522,8 @@ components: semantic: Polypeptide predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-AFFECTS-ortf: @@ -10992,6 +11546,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-STIMULATES-gngm-rev: @@ -11014,6 +11570,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -11040,6 +11598,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-CAUSES-dsyn-rev: @@ -11062,6 +11622,8 @@ components: semantic: PathologicalProcess predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celc-LOCATION_OF-orch: @@ -11084,6 +11646,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-LOCATION_OF-orch-rev: @@ -11106,6 +11670,8 @@ components: semantic: CellularComponent predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs_ncbigene-PART_OF-aapp_umls: @@ -11128,6 +11694,8 @@ components: semantic: Polypeptide predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs_ncbigene-PART_OF-aapp_umls-rev: @@ -11150,6 +11718,8 @@ components: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' topp-CAUSES-dsyn: @@ -11172,6 +11742,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-CAUSES-dsyn-rev: @@ -11194,6 +11766,8 @@ components: semantic: Procedure predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-TREATS-mobd: @@ -11214,8 +11788,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-STIMULATES-gngm_umls: @@ -11238,6 +11814,8 @@ components: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -11264,6 +11842,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -11290,6 +11870,8 @@ components: semantic: PhysiologicalProcess predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orgf-COEXISTS_WITH-orgf-rev: @@ -11312,6 +11894,8 @@ components: semantic: PhysiologicalProcess predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-INTERACTS_WITH-aapp_umls: @@ -11334,6 +11918,8 @@ components: semantic: Polypeptide predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-INTERACTS_WITH-aapp_umls-rev: @@ -11356,6 +11942,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' aapp_ncbigene-ASSOCIATED_WITH-neop_umls-rev: @@ -11378,6 +11966,8 @@ components: semantic: Gene predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' cell-INTERACTS_WITH-gngm: @@ -11400,6 +11990,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-INTERACTS_WITH-gngm-rev: @@ -11422,6 +12014,8 @@ components: semantic: Cell predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-PART_OF-celc_umls: @@ -11444,6 +12038,8 @@ components: semantic: CellularComponent predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-PART_OF-celc_umls-rev: @@ -11466,6 +12062,8 @@ components: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' topp-TREATS-anab: @@ -11485,9 +12083,11 @@ components: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease - predicate: treats + semantic: PhenotypicFeature + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' diap-USES-irda: @@ -11510,6 +12110,8 @@ components: semantic: DiagnosticAid predicate: has_input source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' diap-USES-irda-rev: @@ -11532,6 +12134,8 @@ components: semantic: Procedure predicate: is_input_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-PRODUCES-aapp: @@ -11554,6 +12158,8 @@ components: semantic: Polypeptide predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PRODUCES-aapp-rev: @@ -11576,6 +12182,8 @@ components: semantic: Gene predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' tisu-PART_OF-tisu: @@ -11598,6 +12206,8 @@ components: semantic: GrossAnatomicalStructure predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' tisu-LOCATION_OF-inpo-rev: @@ -11620,6 +12230,8 @@ components: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-USES-antb: @@ -11642,6 +12254,8 @@ components: semantic: SmallMolecule predicate: has_input source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-STIMULATES-gngm_umls-rev: @@ -11664,6 +12278,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -11688,8 +12304,10 @@ components: outputs: - id: UMLS semantic: PhenotypicFeature - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-TREATS-sosy-rev: @@ -11710,8 +12328,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-INTERACTS_WITH-bacs: @@ -11734,6 +12354,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-INTERACTS_WITH-bacs-rev: @@ -11756,6 +12378,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-STIMULATES-bacs: @@ -11778,6 +12402,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -11804,6 +12430,8 @@ components: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -11830,6 +12458,8 @@ components: semantic: Polypeptide predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fngs-LOCATION_OF-aapp-rev: @@ -11852,6 +12482,8 @@ components: semantic: Fungus predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-LOCATION_OF-bact: @@ -11874,6 +12506,8 @@ components: semantic: Bacterium predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-LOCATION_OF-bact-rev: @@ -11896,6 +12530,8 @@ components: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-COEXISTS_WITH-bacs: @@ -11918,6 +12554,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-COEXISTS_WITH-bacs-rev: @@ -11940,6 +12578,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orga-ASSOCIATED_WITH-dsyn: @@ -11962,6 +12602,8 @@ components: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orga-ASSOCIATED_WITH-dsyn-rev: @@ -11984,6 +12626,8 @@ components: semantic: OrganismAttribute predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-CAUSES-celf-rev: @@ -12006,6 +12650,8 @@ components: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-TREATS-patf: @@ -12026,8 +12672,10 @@ components: outputs: - id: UMLS semantic: PathologicalProcess - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-TREATS-patf-rev: @@ -12048,8 +12696,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' mobd-COEXISTS_WITH-mobd: @@ -12072,6 +12722,8 @@ components: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' mobd-COEXISTS_WITH-mobd-rev: @@ -12094,6 +12746,8 @@ components: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-DISRUPTS-celf: @@ -12116,6 +12770,8 @@ components: semantic: PhysiologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-DISRUPTS-celf-rev: @@ -12138,6 +12794,8 @@ components: semantic: Polypeptide predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell_umls-PRODUCES-aapp_ncbigene: @@ -12160,6 +12818,8 @@ components: semantic: Gene predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' cell_umls-PRODUCES-aapp_ncbigene-rev: @@ -12182,6 +12842,8 @@ components: semantic: Cell predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-TREATS-sosy-rev: @@ -12202,8 +12864,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-COEXISTS_WITH-patf: @@ -12226,6 +12890,8 @@ components: semantic: PathologicalProcess predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-COEXISTS_WITH-patf-rev: @@ -12248,6 +12914,8 @@ components: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-LOCATION_OF-inch: @@ -12270,6 +12938,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-USES-lipd: @@ -12292,6 +12962,8 @@ components: semantic: SmallMolecule predicate: has_input source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-INTERACTS_WITH-aapp-rev: @@ -12314,6 +12986,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-INHIBITS-gngm-rev: @@ -12336,6 +13010,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -12362,6 +13038,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-AFFECTS-celf: @@ -12384,6 +13062,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-AFFECTS-celf-rev: @@ -12406,6 +13086,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' emst-LOCATION_OF-aapp-rev: @@ -12428,6 +13110,8 @@ components: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-PART_OF-neop: @@ -12450,6 +13134,8 @@ components: semantic: Disease predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PART_OF-neop-rev: @@ -12472,6 +13158,8 @@ components: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-INTERACTS_WITH-aapp_umls-rev: @@ -12494,6 +13182,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' aapp-PART_OF-fngs: @@ -12516,6 +13206,8 @@ components: semantic: Fungus predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PART_OF-fngs-rev: @@ -12538,6 +13230,8 @@ components: semantic: Polypeptide predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-PREVENTS-dsyn: @@ -12558,8 +13252,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-PREVENTS-dsyn-rev: @@ -12580,8 +13276,10 @@ components: outputs: - id: UMLS semantic: Procedure - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-PART_OF-virs_umls: @@ -12604,6 +13302,8 @@ components: semantic: Virus predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-PART_OF-virs_umls-rev: @@ -12626,6 +13326,8 @@ components: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' topp-USES-carb: @@ -12648,6 +13350,8 @@ components: semantic: SmallMolecule predicate: has_input source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-ASSOCIATED_WITH-dsyn: @@ -12670,6 +13374,8 @@ components: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-CAUSES-celf_umls: @@ -12692,6 +13398,8 @@ components: semantic: PhysiologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-CAUSES-celf_umls-rev: @@ -12714,6 +13422,8 @@ components: semantic: Gene predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' gngm_ncbigene-INTERACTS_WITH-cell_umls: @@ -12736,6 +13446,8 @@ components: semantic: Cell predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-INTERACTS_WITH-cell_umls-rev: @@ -12758,6 +13470,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' dsyn-OCCURS_IN-aggp: @@ -12780,6 +13494,8 @@ components: semantic: Cohort predicate: occurs_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-OCCURS_IN-aggp-rev: @@ -12802,6 +13518,8 @@ components: semantic: Disease predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-AFFECTS-celf: @@ -12824,6 +13542,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AFFECTS-celf-rev: @@ -12846,6 +13566,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-AFFECTS-celf_umls: @@ -12868,6 +13590,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-AFFECTS-celf_umls-rev: @@ -12890,6 +13614,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' aapp_umls-INTERACTS_WITH-gngm_ncbigene: @@ -12912,6 +13638,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' aapp_ncbigene-ASSOCIATED_WITH-dsyn_umls: @@ -12934,6 +13662,8 @@ components: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' blor-LOCATION_OF-blor: @@ -12956,6 +13686,8 @@ components: semantic: AnatomicalEntity predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' blor-LOCATION_OF-blor-rev: @@ -12978,6 +13710,8 @@ components: semantic: AnatomicalEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-CAUSES-patf: @@ -13000,6 +13734,8 @@ components: semantic: PathologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-CAUSES-patf-rev: @@ -13022,6 +13758,8 @@ components: semantic: Polypeptide predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' diap-USES-phsu-rev: @@ -13044,6 +13782,8 @@ components: semantic: Procedure predicate: is_input_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-PART_OF-tisu: @@ -13066,6 +13806,8 @@ components: semantic: GrossAnatomicalStructure predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-LOCATION_OF-elii: @@ -13088,6 +13830,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AFFECTS-bpoc: @@ -13110,6 +13854,8 @@ components: semantic: GrossAnatomicalStructure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AFFECTS-bpoc-rev: @@ -13132,6 +13878,8 @@ components: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bdsu-LOCATION_OF-inch: @@ -13154,6 +13902,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' diap-USES-elii: @@ -13176,6 +13926,8 @@ components: semantic: SmallMolecule predicate: has_input source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-COEXISTS_WITH-bacs: @@ -13198,6 +13950,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-COEXISTS_WITH-bacs-rev: @@ -13220,6 +13974,8 @@ components: semantic: Polypeptide predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-LOCATION_OF-bdsu: @@ -13242,6 +13998,8 @@ components: semantic: AnatomicalEntity predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-LOCATION_OF-bdsu-rev: @@ -13264,6 +14022,8 @@ components: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-AFFECTS-patf: @@ -13286,6 +14046,8 @@ components: semantic: PathologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AFFECTS-patf-rev: @@ -13308,6 +14070,8 @@ components: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-COEXISTS_WITH-inch: @@ -13330,6 +14094,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-COEXISTS_WITH-inch-rev: @@ -13352,6 +14118,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-PRECEDES-dsyn: @@ -13374,6 +14142,8 @@ components: semantic: Disease predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-PRECEDES-dsyn-rev: @@ -13396,6 +14166,8 @@ components: semantic: Disease predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-COEXISTS_WITH-orch: @@ -13418,6 +14190,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-LOCATION_OF-elii: @@ -13440,6 +14214,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-AFFECTS-celf_umls-rev: @@ -13462,6 +14238,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' dora-TREATS-dsyn: @@ -13482,8 +14260,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dora-TREATS-dsyn-rev: @@ -13504,8 +14284,10 @@ components: outputs: - id: UMLS semantic: Activity - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celc-PART_OF-bact: @@ -13528,6 +14310,8 @@ components: semantic: Bacterium predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-PART_OF-bact-rev: @@ -13550,6 +14334,8 @@ components: semantic: CellularComponent predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-PROCESS_OF-plnt: @@ -13572,6 +14358,8 @@ components: semantic: Plant predicate: occurs_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-PROCESS_OF-plnt-rev: @@ -13594,6 +14382,8 @@ components: semantic: Disease predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celf-AFFECTS-celf: @@ -13616,6 +14406,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celf-AFFECTS-celf-rev: @@ -13638,6 +14430,8 @@ components: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bsoj-LOCATION_OF-fndg-rev: @@ -13660,6 +14454,8 @@ components: semantic: AnatomicalEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-INTERACTS_WITH-orch: @@ -13682,6 +14478,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-INTERACTS_WITH-orch-rev: @@ -13704,6 +14502,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-AFFECTS-orgf: @@ -13726,6 +14526,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-AFFECTS-dsyn: @@ -13748,6 +14550,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-AFFECTS-dsyn-rev: @@ -13770,6 +14574,8 @@ components: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-TREATS-cgab: @@ -13790,8 +14596,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' tisu-PART_OF-plnt: @@ -13814,6 +14622,8 @@ components: semantic: Plant predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' tisu-PART_OF-plnt-rev: @@ -13836,6 +14646,8 @@ components: semantic: GrossAnatomicalStructure predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-AUGMENTS-ortf: @@ -13858,6 +14670,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -13884,6 +14698,8 @@ components: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -13910,6 +14726,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -13934,8 +14752,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PREDISPOSES-dsyn-rev: @@ -13956,8 +14776,10 @@ components: outputs: - id: UMLS semantic: Polypeptide - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-PART_OF-bpoc: @@ -13980,6 +14802,8 @@ components: semantic: GrossAnatomicalStructure predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PART_OF-bpoc-rev: @@ -14002,6 +14826,8 @@ components: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-PART_OF-celc_umls-rev: @@ -14024,6 +14850,8 @@ components: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' patf-COEXISTS_WITH-fndg: @@ -14046,6 +14874,8 @@ components: semantic: DiseaseOrPhenotypicFeature predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-COEXISTS_WITH-fndg-rev: @@ -14068,6 +14898,8 @@ components: semantic: PathologicalProcess predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-AFFECTS-fndg: @@ -14090,6 +14922,8 @@ components: semantic: DiseaseOrPhenotypicFeature predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AFFECTS-fndg-rev: @@ -14112,6 +14946,8 @@ components: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_umls-COEXISTS_WITH-gngm_ncbigene: @@ -14134,6 +14970,8 @@ components: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' aapp_umls-COEXISTS_WITH-gngm_ncbigene-rev: @@ -14156,6 +14994,8 @@ components: semantic: Polypeptide predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-STIMULATES-gngm-rev: @@ -14178,6 +15018,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -14204,6 +15046,8 @@ components: semantic: GrossAnatomicalStructure predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-STIMULATES-cell_umls: @@ -14226,6 +15070,8 @@ components: semantic: Cell predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -14252,6 +15098,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -14278,6 +15126,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-TREATS-patf-rev: @@ -14298,8 +15148,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-INHIBITS-gngm-rev: @@ -14322,6 +15174,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -14348,6 +15202,8 @@ components: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: @@ -14374,6 +15230,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -14400,6 +15258,8 @@ components: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-LOCATION_OF-carb: @@ -14422,6 +15282,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' plnt-LOCATION_OF-elii: @@ -14444,6 +15306,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-ASSOCIATED_WITH-gngm: @@ -14466,6 +15330,8 @@ components: semantic: Gene predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-ASSOCIATED_WITH-gngm-rev: @@ -14488,6 +15354,8 @@ components: semantic: PathologicalProcess predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-CAUSES-inpo: @@ -14510,6 +15378,8 @@ components: semantic: PathologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-CAUSES-inpo-rev: @@ -14532,6 +15402,8 @@ components: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-PART_OF-blor_umls: @@ -14554,6 +15426,8 @@ components: semantic: AnatomicalEntity predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-PART_OF-blor_umls-rev: @@ -14576,6 +15450,8 @@ components: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' cell-LOCATION_OF-virs: @@ -14598,6 +15474,8 @@ components: semantic: Virus predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-LOCATION_OF-virs-rev: @@ -14620,6 +15498,8 @@ components: semantic: Cell predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nsba-PART_OF-bpoc-rev: @@ -14642,6 +15522,8 @@ components: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-DISRUPTS-celf: @@ -14664,6 +15546,8 @@ components: semantic: PhysiologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-DISRUPTS-celf-rev: @@ -14686,6 +15570,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-CAUSES-sosy: @@ -14708,6 +15594,8 @@ components: semantic: PhenotypicFeature predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-CAUSES-sosy-rev: @@ -14730,6 +15618,8 @@ components: semantic: Disease predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' plnt-LOCATION_OF-lipd: @@ -14752,6 +15642,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bact-PRODUCES-aapp: @@ -14774,6 +15666,8 @@ components: semantic: Polypeptide predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bact-PRODUCES-aapp-rev: @@ -14796,6 +15690,8 @@ components: semantic: Bacterium predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-STIMULATES-moft_umls: @@ -14818,6 +15714,8 @@ components: semantic: MolecularActivity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -14844,6 +15742,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -14870,6 +15770,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-DISRUPTS-orgf: @@ -14892,6 +15794,8 @@ components: semantic: PhysiologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-TREATS-acab: @@ -14912,8 +15816,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-PART_OF-bpoc_umls: @@ -14936,6 +15842,8 @@ components: semantic: GrossAnatomicalStructure predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-PART_OF-bpoc_umls-rev: @@ -14958,6 +15866,8 @@ components: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' celf-COEXISTS_WITH-celf: @@ -14980,6 +15890,8 @@ components: semantic: PhysiologicalProcess predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celf-COEXISTS_WITH-celf-rev: @@ -15002,6 +15914,8 @@ components: semantic: PhysiologicalProcess predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-STIMULATES-gngm_ncbigene: @@ -15024,6 +15938,8 @@ components: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: @@ -15050,6 +15966,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -15076,6 +15994,8 @@ components: semantic: Cell predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bdsu-PART_OF-cell-rev: @@ -15098,6 +16018,8 @@ components: semantic: AnatomicalEntity predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-CAUSES-patf: @@ -15120,6 +16042,8 @@ components: semantic: PathologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-STIMULATES-aapp: @@ -15142,6 +16066,8 @@ components: semantic: Polypeptide predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -15168,6 +16094,8 @@ components: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -15194,6 +16122,8 @@ components: semantic: Disease predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-CAUSES-sosy: @@ -15216,6 +16146,8 @@ components: semantic: PhenotypicFeature predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-CAUSES-sosy-rev: @@ -15238,6 +16170,8 @@ components: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-CAUSES-patf: @@ -15260,6 +16194,8 @@ components: semantic: PathologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-CAUSES-patf-rev: @@ -15282,6 +16218,8 @@ components: semantic: Procedure predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bact-ASSOCIATED_WITH-dsyn: @@ -15304,6 +16242,8 @@ components: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bact-ASSOCIATED_WITH-dsyn-rev: @@ -15326,6 +16266,8 @@ components: semantic: Bacterium predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' diap-DIAGNOSES-anab: @@ -15345,11 +16287,37 @@ components: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: diagnoses source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' + diap-DIAGNOSES-anab-rev: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: object.umls + parameters: + fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:DIAGNOSES AND subject.semantic_type_abbreviation:diap AND + _exists_:subject.umls AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Procedure + predicate: is_diagnosed_by + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-LOCATION_OF-strd: - supportBatch: True useTemplating: True @@ -15370,6 +16338,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-PART_OF-virs: @@ -15392,6 +16362,8 @@ components: semantic: Virus predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-PART_OF-virs-rev: @@ -15414,6 +16386,8 @@ components: semantic: BiologicalEntity predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell-PRODUCES-bacs: @@ -15436,6 +16410,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-PRODUCES-bacs-rev: @@ -15458,6 +16434,8 @@ components: semantic: Cell predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-PART_OF-virs_umls-rev: @@ -15480,6 +16458,8 @@ components: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' aapp-INTERACTS_WITH-gngm: @@ -15502,6 +16482,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-INTERACTS_WITH-gngm-rev: @@ -15524,6 +16506,8 @@ components: semantic: Polypeptide predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-INTERACTS_WITH-aapp: @@ -15546,6 +16530,8 @@ components: semantic: Polypeptide predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-INTERACTS_WITH-aapp-rev: @@ -15568,6 +16554,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_umls-INHIBITS-aapp_ncbigene: @@ -15590,6 +16578,8 @@ components: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: @@ -15616,6 +16606,8 @@ components: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -15642,6 +16634,8 @@ components: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' aapp-DISRUPTS-orgf: @@ -15664,6 +16658,8 @@ components: semantic: PhysiologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bact-LOCATION_OF-bacs: @@ -15686,6 +16682,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bact-LOCATION_OF-bacs-rev: @@ -15708,6 +16706,8 @@ components: semantic: Bacterium predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsf-PROCESS_OF-plnt: @@ -15730,6 +16730,8 @@ components: semantic: Plant predicate: occurs_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsf-PROCESS_OF-plnt-rev: @@ -15752,6 +16754,8 @@ components: semantic: PhysiologicalProcess predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell-AFFECTS-orgf: @@ -15774,6 +16778,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-AFFECTS-orgf-rev: @@ -15796,6 +16802,8 @@ components: semantic: Cell predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-AFFECTS-orgf: @@ -15818,6 +16826,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-AFFECTS-orgf-rev: @@ -15840,6 +16850,8 @@ components: semantic: Procedure predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-INHIBITS-bacs: @@ -15862,6 +16874,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -15888,6 +16902,8 @@ components: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -15914,6 +16930,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AFFECTS-dsyn-rev: @@ -15936,6 +16954,8 @@ components: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celc-LOCATION_OF-elii: @@ -15958,6 +16978,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-LOCATION_OF-biof: @@ -15980,6 +17002,8 @@ components: semantic: Phenomenon predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-LOCATION_OF-biof-rev: @@ -16002,6 +17026,8 @@ components: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-AUGMENTS-orgf: @@ -16024,6 +17050,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -16050,6 +17078,8 @@ components: semantic: PhysiologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celf-CAUSES-celf-rev: @@ -16072,6 +17102,8 @@ components: semantic: PhysiologicalProcess predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' elii-COEXISTS_WITH-inch-rev: @@ -16094,6 +17126,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' diap-DIAGNOSES-inpo: @@ -16116,6 +17150,8 @@ components: semantic: PathologicalProcess predicate: diagnoses source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fndg-COEXISTS_WITH-patf: @@ -16138,6 +17174,8 @@ components: semantic: PathologicalProcess predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fndg-COEXISTS_WITH-patf-rev: @@ -16160,6 +17198,8 @@ components: semantic: DiseaseOrPhenotypicFeature predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bsoj-LOCATION_OF-inpo-rev: @@ -16182,6 +17222,8 @@ components: semantic: AnatomicalEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-DISRUPTS-moft: @@ -16204,6 +17246,8 @@ components: semantic: MolecularActivity predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-DISRUPTS-moft-rev: @@ -16226,6 +17270,8 @@ components: semantic: Polypeptide predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' patf-COEXISTS_WITH-patf: @@ -16248,6 +17294,8 @@ components: semantic: PathologicalProcess predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-COEXISTS_WITH-patf-rev: @@ -16270,6 +17318,8 @@ components: semantic: PathologicalProcess predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-COEXISTS_WITH-aapp: @@ -16292,6 +17342,8 @@ components: semantic: Polypeptide predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-COEXISTS_WITH-aapp-rev: @@ -16314,6 +17366,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' neop-AFFECTS-bpoc: @@ -16336,6 +17390,8 @@ components: semantic: GrossAnatomicalStructure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' neop-AFFECTS-bpoc-rev: @@ -16358,6 +17414,8 @@ components: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-PRECEDES-acab: @@ -16380,6 +17438,8 @@ components: semantic: Disease predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-PRECEDES-acab-rev: @@ -16402,6 +17462,8 @@ components: semantic: Procedure predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-CAUSES-dsyn-rev: @@ -16424,6 +17486,8 @@ components: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' comd-COEXISTS_WITH-neop-rev: @@ -16446,6 +17510,8 @@ components: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celc-LOCATION_OF-bact: @@ -16468,6 +17534,8 @@ components: semantic: Bacterium predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-LOCATION_OF-bact-rev: @@ -16490,6 +17558,8 @@ components: semantic: CellularComponent predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' fndg-PREDISPOSES-dsyn: @@ -16510,8 +17580,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fndg-PREDISPOSES-dsyn-rev: @@ -16532,8 +17604,10 @@ components: outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' neop-PROCESS_OF-emod: @@ -16556,6 +17630,8 @@ components: semantic: BiologicalEntity predicate: occurs_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' neop-PROCESS_OF-emod-rev: @@ -16578,6 +17654,8 @@ components: semantic: Disease predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-AUGMENTS-bpoc: @@ -16600,6 +17678,8 @@ components: semantic: GrossAnatomicalStructure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -16626,6 +17706,8 @@ components: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -16652,6 +17734,8 @@ components: semantic: PathologicalProcess predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-ASSOCIATED_WITH-patf-rev: @@ -16674,6 +17758,8 @@ components: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-INHIBITS-aapp_umls: @@ -16696,6 +17782,8 @@ components: semantic: Polypeptide predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -16722,6 +17810,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -16748,6 +17838,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs_umls-STIMULATES-gngm_ncbigene: @@ -16770,6 +17862,8 @@ components: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: @@ -16796,6 +17890,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -16822,6 +17918,8 @@ components: semantic: CellularComponent predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PART_OF-celc-rev: @@ -16844,6 +17942,8 @@ components: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-LOCATION_OF-bsoj: @@ -16866,6 +17966,8 @@ components: semantic: AnatomicalEntity predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inpo-COEXISTS_WITH-dsyn-rev: @@ -16888,6 +17990,8 @@ components: semantic: PathologicalProcess predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celc-LOCATION_OF-lipd: @@ -16910,6 +18014,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-AFFECTS-fndg: @@ -16932,6 +18038,8 @@ components: semantic: DiseaseOrPhenotypicFeature predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-AFFECTS-fndg-rev: @@ -16954,6 +18062,8 @@ components: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-CAUSES-patf-rev: @@ -16976,6 +18086,8 @@ components: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' ortf-COEXISTS_WITH-orgf-rev: @@ -16998,6 +18110,8 @@ components: semantic: PhysiologicalProcess predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' tisu-LOCATION_OF-lipd: @@ -17020,6 +18134,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-LOCATION_OF-inch: @@ -17042,6 +18158,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-INHIBITS-gngm_umls: @@ -17064,6 +18182,8 @@ components: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -17090,6 +18210,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -17116,6 +18238,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -17142,6 +18266,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -17168,6 +18294,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-ADMINISTERED_TO-cell: @@ -17190,6 +18318,8 @@ components: semantic: Cell predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-ADMINISTERED_TO-cell-rev: @@ -17212,6 +18342,8 @@ components: semantic: Polypeptide predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-DISRUPTS-moft: @@ -17234,6 +18366,8 @@ components: semantic: MolecularActivity predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-DISRUPTS-moft-rev: @@ -17256,6 +18390,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-INTERACTS_WITH-orch-rev: @@ -17278,6 +18414,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' emst-PART_OF-emst: @@ -17300,6 +18438,8 @@ components: semantic: GrossAnatomicalStructure predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' emst-PART_OF-emst-rev: @@ -17322,6 +18462,8 @@ components: semantic: GrossAnatomicalStructure predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-AFFECTS-patf: @@ -17344,6 +18486,8 @@ components: semantic: PathologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-AFFECTS-patf-rev: @@ -17366,6 +18510,8 @@ components: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' fngs-CAUSES-dsyn: @@ -17388,6 +18534,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fngs-CAUSES-dsyn-rev: @@ -17410,6 +18558,8 @@ components: semantic: Fungus predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' fndg-PROCESS_OF-aggp: @@ -17432,6 +18582,8 @@ components: semantic: Cohort predicate: occurs_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fndg-PROCESS_OF-aggp-rev: @@ -17454,6 +18606,8 @@ components: semantic: DiseaseOrPhenotypicFeature predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bsoj-LOCATION_OF-diap-rev: @@ -17476,6 +18630,8 @@ components: semantic: AnatomicalEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celc-PART_OF-fngs: @@ -17498,6 +18654,8 @@ components: semantic: Fungus predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-PART_OF-fngs-rev: @@ -17520,6 +18678,8 @@ components: semantic: CellularComponent predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-STIMULATES-bacs: @@ -17542,6 +18702,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -17568,6 +18730,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -17594,6 +18758,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -17620,6 +18786,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -17646,6 +18814,8 @@ components: semantic: Virus predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PART_OF-virs-rev: @@ -17668,6 +18838,8 @@ components: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-INHIBITS-bacs: @@ -17690,6 +18862,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -17716,6 +18890,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -17740,8 +18916,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-PREVENTS-dsyn-rev: @@ -17762,8 +18940,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-CAUSES-neop: @@ -17786,6 +18966,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' hops-CAUSES-neop-rev: @@ -17808,6 +18990,8 @@ components: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inpo-CAUSES-dsyn-rev: @@ -17830,6 +19014,8 @@ components: semantic: PathologicalProcess predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-INTERACTS_WITH-aapp_ncbigene: @@ -17852,6 +19038,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' aapp_ncbigene-INTERACTS_WITH-aapp_ncbigene-rev: @@ -17874,6 +19062,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' tisu-LOCATION_OF-carb: @@ -17896,6 +19086,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PRODUCES-bacs: @@ -17918,6 +19110,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PRODUCES-bacs-rev: @@ -17940,6 +19134,8 @@ components: semantic: Gene predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell-LOCATION_OF-gngm: @@ -17962,6 +19158,8 @@ components: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-LOCATION_OF-gngm-rev: @@ -17984,6 +19182,8 @@ components: semantic: Cell predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celf-PROCESS_OF-bact: @@ -18006,6 +19206,8 @@ components: semantic: Bacterium predicate: occurs_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celf-PROCESS_OF-bact-rev: @@ -18028,6 +19230,8 @@ components: semantic: PhysiologicalProcess predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bact-LOCATION_OF-orch: @@ -18050,6 +19254,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-PART_OF-bact_umls: @@ -18072,6 +19278,8 @@ components: semantic: Bacterium predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-PART_OF-bact_umls-rev: @@ -18094,6 +19302,8 @@ components: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' orch-AUGMENTS-cell: @@ -18116,6 +19326,8 @@ components: semantic: Cell predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -18142,6 +19354,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -18168,6 +19382,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-ASSOCIATED_WITH-mobd: @@ -18190,6 +19406,8 @@ components: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-USES-food: @@ -18212,6 +19430,8 @@ components: semantic: Food predicate: has_input source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-USES-food-rev: @@ -18234,6 +19454,8 @@ components: semantic: Procedure predicate: is_input_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orgf-AFFECTS-orgf: @@ -18256,6 +19478,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orgf-AFFECTS-orgf-rev: @@ -18278,6 +19502,8 @@ components: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-AFFECTS-orgf: @@ -18300,6 +19526,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-AFFECTS-orgf-rev: @@ -18322,6 +19550,8 @@ components: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' food-CAUSES-dsyn: @@ -18344,6 +19574,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' food-CAUSES-dsyn-rev: @@ -18366,6 +19598,8 @@ components: semantic: Food predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' neop-CAUSES-dsyn-rev: @@ -18388,6 +19622,8 @@ components: semantic: Disease predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PREDISPOSES-patf: @@ -18408,8 +19644,10 @@ components: outputs: - id: UMLS semantic: PathologicalProcess - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PREDISPOSES-patf-rev: @@ -18430,8 +19668,10 @@ components: outputs: - id: UMLS semantic: Polypeptide - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-PART_OF-cell_umls: @@ -18454,6 +19694,8 @@ components: semantic: Cell predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-PART_OF-cell_umls-rev: @@ -18476,6 +19718,8 @@ components: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' orch-COEXISTS_WITH-phsu: @@ -18498,6 +19742,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PART_OF-bact: @@ -18520,6 +19766,8 @@ components: semantic: Bacterium predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PART_OF-bact-rev: @@ -18542,6 +19790,8 @@ components: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' plnt-LOCATION_OF-inch: @@ -18564,6 +19814,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-PREDISPOSES-patf: @@ -18584,8 +19836,10 @@ components: outputs: - id: UMLS semantic: PathologicalProcess - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-PREDISPOSES-patf-rev: @@ -18606,8 +19860,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-LOCATION_OF-virs: @@ -18630,6 +19886,8 @@ components: semantic: Virus predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-LOCATION_OF-virs-rev: @@ -18652,6 +19910,8 @@ components: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-PREVENTS-patf: @@ -18672,8 +19932,10 @@ components: outputs: - id: UMLS semantic: PathologicalProcess - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-PREVENTS-patf-rev: @@ -18694,8 +19956,10 @@ components: outputs: - id: UMLS semantic: Procedure - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-INHIBITS-fndg: @@ -18718,6 +19982,8 @@ components: semantic: DiseaseOrPhenotypicFeature predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -18744,6 +20010,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -18770,6 +20038,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -18796,6 +20066,8 @@ components: semantic: Procedure predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -18822,6 +20094,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -18848,6 +20122,8 @@ components: semantic: Cell predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-PART_OF-cell-rev: @@ -18870,6 +20146,8 @@ components: semantic: BiologicalEntity predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' sosy-COEXISTS_WITH-fndg: @@ -18892,6 +20170,8 @@ components: semantic: DiseaseOrPhenotypicFeature predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' sosy-COEXISTS_WITH-fndg-rev: @@ -18914,6 +20194,8 @@ components: semantic: PhenotypicFeature predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-PRECEDES-patf: @@ -18936,6 +20218,8 @@ components: semantic: PathologicalProcess predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-PRECEDES-patf-rev: @@ -18958,6 +20242,8 @@ components: semantic: Disease predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-AUGMENTS-bpoc: @@ -18980,6 +20266,8 @@ components: semantic: GrossAnatomicalStructure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -19006,6 +20294,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -19032,6 +20322,8 @@ components: semantic: Cell predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PART_OF-cell-rev: @@ -19054,6 +20346,8 @@ components: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-ADMINISTERED_TO-cell: @@ -19076,6 +20370,8 @@ components: semantic: Cell predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-ADMINISTERED_TO-cell-rev: @@ -19098,6 +20394,8 @@ components: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' moft-AFFECTS-gngm: @@ -19120,6 +20418,8 @@ components: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' moft-AFFECTS-gngm-rev: @@ -19142,6 +20442,8 @@ components: semantic: MolecularActivity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bdsu-PART_OF-bdsu: @@ -19164,6 +20466,8 @@ components: semantic: AnatomicalEntity predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bdsu-PART_OF-bdsu-rev: @@ -19186,6 +20490,8 @@ components: semantic: AnatomicalEntity predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bsoj-LOCATION_OF-anab: @@ -19205,11 +20511,37 @@ components: _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' + bsoj-LOCATION_OF-anab-rev: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: object.umls + parameters: + fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bsoj AND + _exists_:subject.umls AND pmid_count:>3 + outputs: + - id: UMLS + semantic: AnatomicalEntity + predicate: located_in + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' inch-COEXISTS_WITH-inch-rev: - supportBatch: True useTemplating: True @@ -19230,6 +20562,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-INTERACTS_WITH-aapp-rev: @@ -19252,6 +20586,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-AFFECTS-ortf: @@ -19274,6 +20610,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' horm-ASSOCIATED_WITH-dsyn-rev: @@ -19296,6 +20634,8 @@ components: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-PREDISPOSES-neop: @@ -19316,8 +20656,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-AFFECTS-ortf: @@ -19340,6 +20682,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-INTERACTS_WITH-horm: @@ -19362,6 +20706,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-INTERACTS_WITH-aapp-rev: @@ -19384,6 +20730,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_umls-STIMULATES-gngm_ncbigene: @@ -19406,6 +20754,8 @@ components: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: @@ -19432,6 +20782,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -19458,6 +20810,8 @@ components: semantic: PathologicalProcess predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inpo-COEXISTS_WITH-inpo-rev: @@ -19480,6 +20834,8 @@ components: semantic: PathologicalProcess predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-PREVENTS-sosy: @@ -19500,8 +20856,10 @@ components: outputs: - id: UMLS semantic: PhenotypicFeature - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-PREVENTS-sosy-rev: @@ -19522,8 +20880,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-INTERACTS_WITH-phsu: @@ -19546,6 +20906,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-PREVENTS-dsyn-rev: @@ -19566,8 +20928,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' medd-TREATS-inpo: @@ -19588,8 +20952,10 @@ components: outputs: - id: UMLS semantic: PathologicalProcess - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' medd-TREATS-inpo-rev: @@ -19610,8 +20976,10 @@ components: outputs: - id: UMLS semantic: Device - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-INHIBITS-gngm: @@ -19634,6 +21002,8 @@ components: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -19660,6 +21030,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -19686,6 +21058,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -19712,6 +21086,8 @@ components: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' plnt_umls-LOCATION_OF-aapp_ncbigene-rev: @@ -19734,6 +21110,8 @@ components: semantic: Plant predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_umls-INHIBITS-gngm_ncbigene: @@ -19756,6 +21134,8 @@ components: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: @@ -19782,6 +21162,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' neop-AFFECTS-neop-rev: @@ -19804,6 +21186,8 @@ components: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-AFFECTS-moft: @@ -19826,6 +21210,8 @@ components: semantic: MolecularActivity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-AFFECTS-moft-rev: @@ -19848,6 +21234,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' moft-COEXISTS_WITH-dsyn: @@ -19870,6 +21258,8 @@ components: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' moft-COEXISTS_WITH-dsyn-rev: @@ -19892,6 +21282,8 @@ components: semantic: MolecularActivity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-INTERACTS_WITH-phsu: @@ -19914,6 +21306,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AFFECTS-celc: @@ -19936,6 +21330,8 @@ components: semantic: CellularComponent predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AFFECTS-celc-rev: @@ -19958,6 +21354,8 @@ components: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-AFFECTS-orgf_umls: @@ -19980,6 +21378,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' neop-PROCESS_OF-aggp-rev: @@ -20002,6 +21402,8 @@ components: semantic: Disease predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' patf-CAUSES-orgf: @@ -20024,6 +21426,8 @@ components: semantic: PhysiologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-CAUSES-orgf-rev: @@ -20046,6 +21450,8 @@ components: semantic: PathologicalProcess predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-AFFECTS-neop: @@ -20068,6 +21474,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-CAUSES-orgf: @@ -20090,6 +21498,8 @@ components: semantic: PhysiologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fndg-COEXISTS_WITH-sosy: @@ -20112,6 +21522,8 @@ components: semantic: PhenotypicFeature predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fndg-COEXISTS_WITH-sosy-rev: @@ -20134,6 +21546,8 @@ components: semantic: DiseaseOrPhenotypicFeature predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-PART_OF-fngs: @@ -20156,6 +21570,8 @@ components: semantic: Fungus predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-PART_OF-fngs-rev: @@ -20178,6 +21594,8 @@ components: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-AFFECTS-dsyn: @@ -20200,6 +21618,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-AFFECTS-dsyn-rev: @@ -20222,6 +21642,8 @@ components: semantic: Procedure predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-LOCATION_OF-gngm: @@ -20244,6 +21666,8 @@ components: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-LOCATION_OF-gngm-rev: @@ -20266,6 +21690,8 @@ components: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-ASSOCIATED_WITH-inpo: @@ -20288,6 +21714,8 @@ components: semantic: PathologicalProcess predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inpo-CAUSES-patf: @@ -20310,6 +21738,8 @@ components: semantic: PathologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inpo-CAUSES-patf-rev: @@ -20332,6 +21762,8 @@ components: semantic: PathologicalProcess predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-INHIBITS-bacs-rev: @@ -20354,6 +21786,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -20378,8 +21812,10 @@ components: outputs: - id: UMLS semantic: PathologicalProcess - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' hops-STIMULATES-gngm-rev: @@ -20402,6 +21838,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -20428,6 +21866,8 @@ components: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-PREVENTS-dsyn: @@ -20448,8 +21888,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-PREVENTS-dsyn-rev: @@ -20470,8 +21912,10 @@ components: outputs: - id: UMLS semantic: BiologicalEntity - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' virs-CAUSES-neop: @@ -20494,6 +21938,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' diap-DIAGNOSES-cgab: @@ -20516,6 +21962,8 @@ components: semantic: Disease predicate: diagnoses source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-AUGMENTS-celf: @@ -20538,6 +21986,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -20564,6 +22014,8 @@ components: semantic: PathologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' lipd-PART_OF-bact-rev: @@ -20586,6 +22038,8 @@ components: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-STIMULATES-bacs-rev: @@ -20608,6 +22062,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -20632,8 +22088,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-PREDISPOSES-dsyn-rev: @@ -20654,8 +22112,10 @@ components: outputs: - id: UMLS semantic: PathologicalProcess - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-PROCESS_OF-emod-rev: @@ -20678,6 +22138,8 @@ components: semantic: Disease predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-PREDISPOSES-fndg: @@ -20698,8 +22160,10 @@ components: outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-PREDISPOSES-fndg-rev: @@ -20720,8 +22184,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-INHIBITS-gngm: @@ -20744,6 +22210,8 @@ components: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -20770,6 +22238,8 @@ components: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -20796,6 +22266,8 @@ components: semantic: Disease predicate: diagnoses source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' medd-TREATS-patf: @@ -20816,8 +22288,10 @@ components: outputs: - id: UMLS semantic: PathologicalProcess - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-AUGMENTS-moft: @@ -20840,6 +22314,8 @@ components: semantic: MolecularActivity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -20866,6 +22342,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -20892,6 +22370,8 @@ components: semantic: DiseaseOrPhenotypicFeature predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-AFFECTS-fndg-rev: @@ -20914,6 +22394,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-AFFECTS-moft_umls: @@ -20936,6 +22418,8 @@ components: semantic: MolecularActivity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-AFFECTS-moft_umls-rev: @@ -20958,6 +22442,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' bacs-DISRUPTS-celf-rev: @@ -20980,6 +22466,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell-LOCATION_OF-bsoj: @@ -21002,6 +22490,8 @@ components: semantic: AnatomicalEntity predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-LOCATION_OF-bsoj-rev: @@ -21024,6 +22514,8 @@ components: semantic: Cell predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-INTERACTS_WITH-bacs_umls: @@ -21046,6 +22538,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-INTERACTS_WITH-bacs_umls-rev: @@ -21068,6 +22562,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' patf-AFFECTS-patf: @@ -21090,6 +22586,8 @@ components: semantic: PathologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-AFFECTS-patf-rev: @@ -21112,6 +22610,8 @@ components: semantic: PathologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell_umls-INTERACTS_WITH-gngm_ncbigene: @@ -21134,6 +22634,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' cell_umls-INTERACTS_WITH-gngm_ncbigene-rev: @@ -21156,6 +22658,8 @@ components: semantic: Cell predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsf-COEXISTS_WITH-orgf-rev: @@ -21178,6 +22682,8 @@ components: semantic: PhysiologicalProcess predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell-LOCATION_OF-strd: @@ -21200,6 +22706,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celf-AFFECTS-cell: @@ -21222,6 +22730,8 @@ components: semantic: Cell predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celf-AFFECTS-cell-rev: @@ -21244,6 +22754,8 @@ components: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-ASSOCIATED_WITH-dsyn: @@ -21266,6 +22778,8 @@ components: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-ASSOCIATED_WITH-dsyn-rev: @@ -21288,6 +22802,8 @@ components: semantic: BiologicalEntity predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-STIMULATES-gngm-rev: @@ -21310,6 +22826,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -21336,6 +22854,8 @@ components: semantic: Polypeptide predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' neop-PRODUCES-aapp-rev: @@ -21358,6 +22878,8 @@ components: semantic: Disease predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-PREVENTS-sosy: @@ -21378,8 +22900,10 @@ components: outputs: - id: UMLS semantic: PhenotypicFeature - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-PREVENTS-sosy-rev: @@ -21400,8 +22924,10 @@ components: outputs: - id: UMLS semantic: Procedure - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-AUGMENTS-celf_umls: @@ -21424,6 +22950,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -21450,6 +22978,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -21476,6 +23006,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell_umls-LOCATION_OF-gngm_ncbigene: @@ -21498,6 +23030,8 @@ components: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' topp-AFFECTS-neop: @@ -21520,6 +23054,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-CAUSES-comd: @@ -21542,6 +23078,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-LOCATION_OF-carb: @@ -21564,6 +23102,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fngs-LOCATION_OF-orch: @@ -21586,6 +23126,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fngs-LOCATION_OF-orch-rev: @@ -21608,6 +23150,8 @@ components: semantic: Fungus predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-COEXISTS_WITH-gngm_umls: @@ -21630,6 +23174,8 @@ components: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-COEXISTS_WITH-gngm_umls-rev: @@ -21652,6 +23198,8 @@ components: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' orgf-COEXISTS_WITH-ortf: @@ -21674,6 +23222,8 @@ components: semantic: PhysiologicalProcess predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-AFFECTS-ortf: @@ -21696,6 +23246,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bact_umls-LOCATION_OF-aapp_ncbigene: @@ -21718,6 +23270,8 @@ components: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' bact_umls-LOCATION_OF-aapp_ncbigene-rev: @@ -21740,6 +23294,8 @@ components: semantic: Bacterium predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-AFFECTS-orgf-rev: @@ -21762,6 +23318,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-INTERACTS_WITH-bact: @@ -21784,6 +23342,8 @@ components: semantic: Bacterium predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-INTERACTS_WITH-bact-rev: @@ -21806,6 +23366,8 @@ components: semantic: Polypeptide predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-COEXISTS_WITH-phsu: @@ -21828,6 +23390,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-INTERACTS_WITH-cell: @@ -21850,6 +23414,8 @@ components: semantic: Cell predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-INTERACTS_WITH-cell-rev: @@ -21872,6 +23438,8 @@ components: semantic: Polypeptide predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-TREATS-virs: @@ -21892,8 +23460,10 @@ components: outputs: - id: UMLS semantic: Virus - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-TREATS-virs-rev: @@ -21914,8 +23484,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-PART_OF-bact_umls-rev: @@ -21938,6 +23510,8 @@ components: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' hops-CAUSES-inpo-rev: @@ -21960,6 +23534,8 @@ components: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-INTERACTS_WITH-aapp_ncbigene-rev: @@ -21982,6 +23558,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' orgf-PRECEDES-orgf: @@ -22004,6 +23582,8 @@ components: semantic: PhysiologicalProcess predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orgf-PRECEDES-orgf-rev: @@ -22026,6 +23606,8 @@ components: semantic: PhysiologicalProcess predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bdsu-ASSOCIATED_WITH-fndg: @@ -22048,6 +23630,8 @@ components: semantic: DiseaseOrPhenotypicFeature predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bdsu-ASSOCIATED_WITH-fndg-rev: @@ -22070,6 +23654,8 @@ components: semantic: AnatomicalEntity predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-PART_OF-celc-rev: @@ -22092,6 +23678,8 @@ components: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-AUGMENTS-celf: @@ -22114,6 +23702,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -22140,6 +23730,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -22166,6 +23758,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' gngm_ncbigene-PART_OF-cell_umls-rev: @@ -22188,6 +23782,8 @@ components: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' bpoc_umls-LOCATION_OF-gngm_ncbigene: @@ -22210,6 +23806,8 @@ components: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' gngm_ncbigene-INTERACTS_WITH-bacs_umls-rev: @@ -22232,6 +23830,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' orch-INHIBITS-orch: @@ -22254,6 +23854,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -22280,6 +23882,8 @@ components: semantic: Cohort predicate: occurs_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' sosy-PROCESS_OF-aggp-rev: @@ -22302,6 +23906,8 @@ components: semantic: PhenotypicFeature predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celc-LOCATION_OF-virs: @@ -22324,6 +23930,8 @@ components: semantic: Virus predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-LOCATION_OF-virs-rev: @@ -22346,6 +23954,8 @@ components: semantic: CellularComponent predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-AFFECTS-moft-rev: @@ -22368,6 +23978,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-ASSOCIATED_WITH-dsyn: @@ -22390,6 +24002,8 @@ components: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-ASSOCIATED_WITH-dsyn-rev: @@ -22412,6 +24026,8 @@ components: semantic: NucleicAcidEntity predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-INHIBITS-gngm_ncbigene: @@ -22434,6 +24050,8 @@ components: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: @@ -22460,6 +24078,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -22486,6 +24106,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-COEXISTS_WITH-bacs-rev: @@ -22508,6 +24130,8 @@ components: semantic: NucleicAcidEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-AFFECTS-tisu: @@ -22530,6 +24154,8 @@ components: semantic: GrossAnatomicalStructure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PREDISPOSES-neop: @@ -22550,8 +24176,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-PREDISPOSES-dsyn: @@ -22572,8 +24200,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-PREDISPOSES-dsyn-rev: @@ -22594,8 +24224,10 @@ components: outputs: - id: UMLS semantic: Procedure - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' fndg-PREDISPOSES-fndg: @@ -22616,8 +24248,10 @@ components: outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fndg-PREDISPOSES-fndg-rev: @@ -22638,8 +24272,10 @@ components: outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-PART_OF-virs: @@ -22662,6 +24298,8 @@ components: semantic: Virus predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-PART_OF-virs-rev: @@ -22684,6 +24322,8 @@ components: semantic: NucleicAcidEntity predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' patf-AFFECTS-dsyn: @@ -22706,6 +24346,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-AFFECTS-dsyn-rev: @@ -22728,6 +24370,8 @@ components: semantic: PathologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-COEXISTS_WITH-gngm: @@ -22750,6 +24394,8 @@ components: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-COEXISTS_WITH-gngm-rev: @@ -22772,6 +24418,8 @@ components: semantic: NucleicAcidEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-CAUSES-mobd: @@ -22794,6 +24442,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-PART_OF-virs: @@ -22816,6 +24466,8 @@ components: semantic: Virus predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-PART_OF-virs-rev: @@ -22838,6 +24490,8 @@ components: semantic: CellularComponent predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celf-AFFECTS-patf: @@ -22860,6 +24514,8 @@ components: semantic: PathologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celf-AFFECTS-patf-rev: @@ -22882,6 +24538,8 @@ components: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' sosy-COEXISTS_WITH-sosy: @@ -22904,6 +24562,8 @@ components: semantic: PhenotypicFeature predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' sosy-COEXISTS_WITH-sosy-rev: @@ -22926,6 +24586,8 @@ components: semantic: PhenotypicFeature predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-INTERACTS_WITH-nsba: @@ -22948,6 +24610,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AFFECTS-biof: @@ -22970,6 +24634,8 @@ components: semantic: Phenomenon predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AFFECTS-biof-rev: @@ -22992,6 +24658,8 @@ components: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-PRODUCES-aapp: @@ -23014,6 +24682,8 @@ components: semantic: Polypeptide predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-PRODUCES-aapp-rev: @@ -23036,6 +24706,8 @@ components: semantic: GrossAnatomicalStructure predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celc-LOCATION_OF-bsoj: @@ -23058,6 +24730,8 @@ components: semantic: AnatomicalEntity predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-LOCATION_OF-bsoj-rev: @@ -23080,6 +24754,8 @@ components: semantic: CellularComponent predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-AUGMENTS-moft-rev: @@ -23102,6 +24778,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -23128,6 +24806,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -23154,6 +24834,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bact-PRODUCES-bacs-rev: @@ -23176,6 +24858,8 @@ components: semantic: Bacterium predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orgf-AFFECTS-orga: @@ -23198,6 +24882,8 @@ components: semantic: OrganismAttribute predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orgf-AFFECTS-orga-rev: @@ -23220,6 +24906,8 @@ components: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-PREVENTS-patf: @@ -23240,8 +24928,10 @@ components: outputs: - id: UMLS semantic: PathologicalProcess - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-PREVENTS-patf-rev: @@ -23262,8 +24952,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-INTERACTS_WITH-carb: @@ -23286,6 +24978,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' emst_umls-LOCATION_OF-aapp_ncbigene-rev: @@ -23308,6 +25002,8 @@ components: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-INTERACTS_WITH-horm: @@ -23330,6 +25026,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' horm-INTERACTS_WITH-horm-rev: @@ -23352,6 +25050,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-PART_OF-bpoc-rev: @@ -23374,6 +25074,8 @@ components: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-PREDISPOSES-dsyn: @@ -23394,8 +25096,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-PREDISPOSES-dsyn-rev: @@ -23416,8 +25120,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celf-AFFECTS-bacs: @@ -23440,6 +25146,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celf-AFFECTS-bacs-rev: @@ -23462,6 +25170,8 @@ components: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-CAUSES-patf-rev: @@ -23484,6 +25194,8 @@ components: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-AFFECTS-bpoc: @@ -23506,6 +25218,8 @@ components: semantic: GrossAnatomicalStructure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-AFFECTS-bpoc-rev: @@ -23528,6 +25242,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-INTERACTS_WITH-nnon: @@ -23550,6 +25266,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AFFECTS-orgf: @@ -23572,6 +25290,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bsoj-LOCATION_OF-celc: @@ -23594,6 +25314,8 @@ components: semantic: CellularComponent predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bsoj-LOCATION_OF-celc-rev: @@ -23616,6 +25338,8 @@ components: semantic: AnatomicalEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-AUGMENTS-celf_umls-rev: @@ -23638,6 +25362,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -23664,6 +25390,8 @@ components: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-ASSOCIATED_WITH-neop-rev: @@ -23686,6 +25414,8 @@ components: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-PREVENTS-inpo: @@ -23706,8 +25436,10 @@ components: outputs: - id: UMLS semantic: PathologicalProcess - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fngs-LOCATION_OF-bacs: @@ -23730,6 +25462,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-LOCATION_OF-diap: @@ -23752,6 +25486,8 @@ components: semantic: Procedure predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-LOCATION_OF-diap-rev: @@ -23774,6 +25510,8 @@ components: semantic: Cell predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-ASSOCIATED_WITH-neop: @@ -23796,6 +25534,8 @@ components: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-AFFECTS-patf: @@ -23818,6 +25558,8 @@ components: semantic: PathologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-AFFECTS-patf-rev: @@ -23840,6 +25582,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-DISRUPTS-celf_umls: @@ -23862,6 +25606,8 @@ components: semantic: PhysiologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-DISRUPTS-celf_umls-rev: @@ -23884,6 +25630,8 @@ components: semantic: Gene predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' bacs-AFFECTS-cell: @@ -23906,6 +25654,8 @@ components: semantic: Cell predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-AFFECTS-cell-rev: @@ -23928,6 +25678,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-INTERACTS_WITH-imft: @@ -23950,6 +25702,8 @@ components: semantic: BiologicalEntity predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-INTERACTS_WITH-imft-rev: @@ -23972,6 +25726,8 @@ components: semantic: Polypeptide predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' diap-DIAGNOSES-mobd: @@ -23994,6 +25750,8 @@ components: semantic: Disease predicate: diagnoses source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' neop-CAUSES-neop: @@ -24016,6 +25774,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AUGMENTS-phsf: @@ -24038,6 +25798,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -24064,6 +25826,8 @@ components: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' medd-TREATS-neop: @@ -24084,8 +25848,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-ASSOCIATED_WITH-neop: @@ -24108,6 +25874,8 @@ components: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-INTERACTS_WITH-lipd: @@ -24130,6 +25898,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-DISRUPTS-cell: @@ -24152,6 +25922,8 @@ components: semantic: Cell predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-DISRUPTS-cell-rev: @@ -24174,6 +25946,8 @@ components: semantic: Polypeptide predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' fndg-PREDISPOSES-neop: @@ -24194,8 +25968,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-DISRUPTS-celf: @@ -24218,6 +25994,8 @@ components: semantic: PhysiologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-DISRUPTS-celf-rev: @@ -24240,6 +26018,8 @@ components: semantic: Gene predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-PREVENTS-dsyn-rev: @@ -24260,8 +26040,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-INTERACTS_WITH-gngm: @@ -24284,6 +26066,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-INTERACTS_WITH-gngm-rev: @@ -24306,6 +26090,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' diap-DIAGNOSES-sosy: @@ -24328,30 +26114,10 @@ components: semantic: PhenotypicFeature predicate: diagnoses source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' - diap-DIAGNOSES-sosy-rev: - - supportBatch: True - useTemplating: True - inputs: - - id: UMLS - semantic: PhenotypicFeature - requestBody: - body: - q: '{{ queryInputs }}' - scopes: object.umls - parameters: - fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name - size: 1000 - filter: predicate:DIAGNOSES AND subject.semantic_type_abbreviation:diap AND - _exists_:subject.umls AND pmid_count:>3 - outputs: - - id: UMLS - semantic: Procedure - predicate: is_diagnosed_by - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' acab-COEXISTS_WITH-dsyn-rev: - supportBatch: True useTemplating: True @@ -24372,6 +26138,8 @@ components: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celf-AFFECTS-neop: @@ -24394,6 +26162,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celf-AFFECTS-neop-rev: @@ -24416,6 +26186,8 @@ components: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-AFFECTS-dsyn: @@ -24438,6 +26210,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-AFFECTS-dsyn-rev: @@ -24460,6 +26234,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-CAUSES-comd: @@ -24482,6 +26258,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-LOCATION_OF-bact: @@ -24504,6 +26282,8 @@ components: semantic: Bacterium predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-LOCATION_OF-bact-rev: @@ -24526,6 +26306,8 @@ components: semantic: Cell predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PRODUCES-inch: @@ -24548,6 +26330,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PRODUCES-inch-rev: @@ -24570,6 +26354,8 @@ components: semantic: Polypeptide predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-AFFECTS-phsf: @@ -24592,6 +26378,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-COEXISTS_WITH-orch: @@ -24614,6 +26402,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' acab-PART_OF-neop: @@ -24636,6 +26426,8 @@ components: semantic: Disease predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' acab-PART_OF-neop-rev: @@ -24658,6 +26450,8 @@ components: semantic: Disease predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs_umls-INTERACTS_WITH-aapp_ncbigene: @@ -24680,6 +26474,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' bacs_umls-INTERACTS_WITH-aapp_ncbigene-rev: @@ -24702,6 +26498,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-COEXISTS_WITH-gngm_ncbigene: @@ -24724,6 +26522,8 @@ components: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' aapp_ncbigene-COEXISTS_WITH-gngm_ncbigene-rev: @@ -24746,6 +26546,8 @@ components: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' celc-PART_OF-neop: @@ -24768,6 +26570,8 @@ components: semantic: Disease predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-PART_OF-neop-rev: @@ -24790,6 +26594,8 @@ components: semantic: CellularComponent predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-USES-orch: @@ -24812,6 +26618,8 @@ components: semantic: SmallMolecule predicate: has_input source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nnon-INTERACTS_WITH-aapp-rev: @@ -24834,6 +26642,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-PRODUCES-aapp_umls: @@ -24856,6 +26666,8 @@ components: semantic: Polypeptide predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-PRODUCES-aapp_umls-rev: @@ -24878,6 +26690,8 @@ components: semantic: Gene predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' lipd-AUGMENTS-celf-rev: @@ -24900,6 +26714,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -24926,6 +26742,8 @@ components: semantic: PhysiologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' moft-CAUSES-celf-rev: @@ -24948,6 +26766,8 @@ components: semantic: MolecularActivity predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-CAUSES-dsyn-rev: @@ -24970,6 +26790,8 @@ components: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-TREATS-dsyn: @@ -24990,8 +26812,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-TREATS-dsyn-rev: @@ -25012,8 +26836,10 @@ components: outputs: - id: UMLS semantic: Polypeptide - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-AFFECTS-moft_umls-rev: @@ -25036,6 +26862,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' phsu-PREVENTS-patf-rev: @@ -25056,8 +26884,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-INHIBITS-ortf: @@ -25080,6 +26910,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -25106,6 +26938,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -25132,6 +26966,8 @@ components: semantic: CellularComponent predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-PART_OF-celc-rev: @@ -25154,6 +26990,8 @@ components: semantic: NucleicAcidEntity predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-DISRUPTS-celf_umls-rev: @@ -25176,6 +27014,8 @@ components: semantic: Gene predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' imft-PART_OF-bact: @@ -25198,6 +27038,8 @@ components: semantic: Bacterium predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-PART_OF-bact-rev: @@ -25220,6 +27062,8 @@ components: semantic: BiologicalEntity predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-INTERACTS_WITH-gngm_umls: @@ -25242,6 +27086,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-INTERACTS_WITH-gngm_umls-rev: @@ -25264,6 +27110,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' hops-INHIBITS-gngm-rev: @@ -25286,6 +27134,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -25312,6 +27162,8 @@ components: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' fngs_umls-LOCATION_OF-aapp_ncbigene-rev: @@ -25334,6 +27186,8 @@ components: semantic: Fungus predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orga-PREDISPOSES-dsyn: @@ -25354,8 +27208,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orga-PREDISPOSES-dsyn-rev: @@ -25376,8 +27232,10 @@ components: outputs: - id: UMLS semantic: OrganismAttribute - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bsoj-LOCATION_OF-acab: @@ -25400,6 +27258,8 @@ components: semantic: Disease predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-INTERACTS_WITH-bacs: @@ -25422,6 +27282,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-INTERACTS_WITH-bacs-rev: @@ -25444,6 +27306,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' tisu-LOCATION_OF-gngm-rev: @@ -25466,6 +27330,8 @@ components: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-INHIBITS-ortf-rev: @@ -25488,6 +27354,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -25514,6 +27382,8 @@ components: semantic: Gene predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' bacs_ncbigene-PART_OF-aapp_ncbigene-rev: @@ -25536,6 +27406,8 @@ components: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' aapp-ASSOCIATED_WITH-sosy: @@ -25558,6 +27430,8 @@ components: semantic: PhenotypicFeature predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-ASSOCIATED_WITH-sosy-rev: @@ -25580,6 +27454,8 @@ components: semantic: Polypeptide predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-AFFECTS-bpoc-rev: @@ -25602,6 +27478,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-CAUSES-inpo-rev: @@ -25624,6 +27502,8 @@ components: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-AFFECTS-moft: @@ -25646,6 +27526,8 @@ components: semantic: MolecularActivity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AFFECTS-moft-rev: @@ -25668,6 +27550,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nsba-PART_OF-celc-rev: @@ -25690,6 +27574,8 @@ components: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' virs-COEXISTS_WITH-dsyn: @@ -25712,6 +27598,8 @@ components: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' virs-COEXISTS_WITH-dsyn-rev: @@ -25734,6 +27622,8 @@ components: semantic: Virus predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-LOCATION_OF-nsba: @@ -25756,6 +27646,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-COEXISTS_WITH-sosy: @@ -25778,6 +27670,8 @@ components: semantic: PhenotypicFeature predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-COEXISTS_WITH-sosy-rev: @@ -25800,6 +27694,8 @@ components: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' tisu-LOCATION_OF-bact-rev: @@ -25822,6 +27718,8 @@ components: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd-ASSOCIATED_WITH-dsyn-rev: @@ -25844,6 +27742,8 @@ components: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-PART_OF-fngs: @@ -25866,6 +27766,8 @@ components: semantic: Fungus predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PART_OF-fngs-rev: @@ -25888,6 +27790,8 @@ components: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-AUGMENTS-ortf: @@ -25910,6 +27814,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -25936,6 +27842,8 @@ components: semantic: CellularComponent predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-PART_OF-celc-rev: @@ -25958,6 +27866,8 @@ components: semantic: BiologicalEntity predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nnon-ADMINISTERED_TO-cell-rev: @@ -25980,6 +27890,8 @@ components: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bsoj-LOCATION_OF-sosy: @@ -26002,30 +27914,10 @@ components: semantic: PhenotypicFeature predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' - bsoj-LOCATION_OF-sosy-rev: - - supportBatch: True - useTemplating: True - inputs: - - id: UMLS - semantic: PhenotypicFeature - requestBody: - body: - q: '{{ queryInputs }}' - scopes: object.umls - parameters: - fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name - size: 1000 - filter: predicate:LOCATION_OF AND subject.semantic_type_abbreviation:bsoj AND - _exists_:subject.umls AND pmid_count:>3 - outputs: - - id: UMLS - semantic: AnatomicalEntity - predicate: located_in - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-COEXISTS_WITH-aapp: - supportBatch: True useTemplating: True @@ -26046,6 +27938,8 @@ components: semantic: Polypeptide predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-COEXISTS_WITH-aapp-rev: @@ -26068,6 +27962,8 @@ components: semantic: Polypeptide predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bact-LOCATION_OF-carb: @@ -26090,6 +27986,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inch-CAUSES-comd-rev: @@ -26112,6 +28010,8 @@ components: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' patf-AFFECTS-orgf: @@ -26134,6 +28034,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-AFFECTS-orgf-rev: @@ -26156,6 +28058,8 @@ components: semantic: PathologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' tisu-LOCATION_OF-virs-rev: @@ -26178,6 +28082,8 @@ components: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' antb-CAUSES-inpo-rev: @@ -26200,6 +28106,8 @@ components: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-STIMULATES-horm: @@ -26222,6 +28130,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -26248,6 +28158,8 @@ components: semantic: GrossAnatomicalStructure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -26274,6 +28186,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' virs-LOCATION_OF-aapp: @@ -26296,6 +28210,8 @@ components: semantic: Polypeptide predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' virs-LOCATION_OF-aapp-rev: @@ -26318,6 +28234,8 @@ components: semantic: Virus predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orgf-ASSOCIATED_WITH-sosy: @@ -26340,6 +28258,8 @@ components: semantic: PhenotypicFeature predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orgf-ASSOCIATED_WITH-sosy-rev: @@ -26362,6 +28282,8 @@ components: semantic: PhysiologicalProcess predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' elii-AUGMENTS-celf-rev: @@ -26384,6 +28306,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -26410,6 +28334,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_umls-PRODUCES-aapp_ncbigene: @@ -26432,6 +28358,8 @@ components: semantic: Gene predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' gngm_umls-PRODUCES-aapp_ncbigene-rev: @@ -26454,6 +28382,8 @@ components: semantic: Gene predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PRODUCES-aapp: @@ -26476,6 +28406,8 @@ components: semantic: Polypeptide predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PRODUCES-aapp-rev: @@ -26498,6 +28430,8 @@ components: semantic: Polypeptide predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-COEXISTS_WITH-cgab: @@ -26520,6 +28454,8 @@ components: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' tisu-LOCATION_OF-bsoj-rev: @@ -26542,6 +28478,8 @@ components: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-AFFECTS-orgf-rev: @@ -26564,6 +28502,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd_umls-STIMULATES-gngm_ncbigene-rev: @@ -26586,6 +28526,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -26612,6 +28554,8 @@ components: semantic: Fungus predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-PART_OF-fngs_umls-rev: @@ -26634,6 +28578,8 @@ components: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' horm_ncbigene-TREATS-dsyn_umls: @@ -26654,8 +28600,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' horm_ncbigene-TREATS-dsyn_umls-rev: @@ -26676,8 +28624,10 @@ components: outputs: - id: NCBIGene semantic: Gene - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' cgab-COEXISTS_WITH-dsyn-rev: @@ -26700,6 +28650,8 @@ components: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-COEXISTS_WITH-aapp-rev: @@ -26722,6 +28674,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-INHIBITS-aapp: @@ -26744,6 +28698,8 @@ components: semantic: Polypeptide predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -26770,6 +28726,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -26796,6 +28754,8 @@ components: semantic: PhysiologicalProcess predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inpo-PRECEDES-celf-rev: @@ -26818,6 +28778,8 @@ components: semantic: PathologicalProcess predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-CAUSES-dsyn_umls: @@ -26840,6 +28802,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-CAUSES-dsyn_umls-rev: @@ -26862,6 +28826,8 @@ components: semantic: Gene predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' plnt-LOCATION_OF-strd: @@ -26884,6 +28850,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' carb-AUGMENTS-celf-rev: @@ -26906,6 +28874,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -26932,6 +28902,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-PART_OF-neop_umls: @@ -26954,6 +28926,8 @@ components: semantic: Disease predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-PART_OF-neop_umls-rev: @@ -26976,6 +28950,8 @@ components: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' inpo-PROCESS_OF-aggp: @@ -26998,6 +28974,8 @@ components: semantic: Cohort predicate: occurs_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inpo-PROCESS_OF-aggp-rev: @@ -27020,6 +28998,8 @@ components: semantic: PathologicalProcess predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_umls-INHIBITS-gngm_ncbigene: @@ -27042,6 +29022,8 @@ components: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: @@ -27068,6 +29050,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -27092,8 +29076,10 @@ components: outputs: - id: UMLS semantic: PathologicalProcess - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-TREATS-virs: @@ -27114,8 +29100,10 @@ components: outputs: - id: UMLS semantic: Virus - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-TREATS-virs-rev: @@ -27136,8 +29124,10 @@ components: outputs: - id: UMLS semantic: Procedure - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-DISRUPTS-moft-rev: @@ -27160,6 +29150,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-COEXISTS_WITH-inpo: @@ -27182,6 +29174,8 @@ components: semantic: PathologicalProcess predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' tisu-PRODUCES-aapp-rev: @@ -27204,6 +29198,8 @@ components: semantic: GrossAnatomicalStructure predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_umls-INTERACTS_WITH-aapp_ncbigene: @@ -27226,6 +29222,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' gngm_umls-INTERACTS_WITH-aapp_ncbigene-rev: @@ -27248,6 +29246,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-TREATS-patf-rev: @@ -27268,8 +29268,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celf-AFFECTS-dsyn: @@ -27292,6 +29294,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-PROCESS_OF-aggp-rev: @@ -27314,6 +29318,8 @@ components: semantic: PathologicalProcess predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orgf-AFFECTS-patf-rev: @@ -27336,6 +29342,8 @@ components: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nsba-INTERACTS_WITH-aapp-rev: @@ -27358,6 +29366,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-CAUSES-dsyn: @@ -27380,6 +29390,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-CAUSES-dsyn-rev: @@ -27402,6 +29414,8 @@ components: semantic: Gene predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-COEXISTS_WITH-lipd: @@ -27424,6 +29438,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bact-CAUSES-patf: @@ -27446,6 +29462,8 @@ components: semantic: PathologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bact-CAUSES-patf-rev: @@ -27468,6 +29486,8 @@ components: semantic: Bacterium predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-AFFECTS-patf: @@ -27490,6 +29510,8 @@ components: semantic: PathologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-AFFECTS-patf-rev: @@ -27512,6 +29534,8 @@ components: semantic: Procedure predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-PREVENTS-comd: @@ -27532,8 +29556,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-INHIBITS-aapp_ncbigene: @@ -27556,6 +29582,8 @@ components: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: @@ -27582,6 +29610,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -27608,6 +29638,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -27634,6 +29666,8 @@ components: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: @@ -27660,6 +29694,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' diap-PRECEDES-topp-rev: @@ -27682,6 +29718,8 @@ components: semantic: Procedure predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-ASSOCIATED_WITH-moft: @@ -27704,6 +29742,8 @@ components: semantic: MolecularActivity predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-ASSOCIATED_WITH-moft-rev: @@ -27726,6 +29766,8 @@ components: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-ASSOCIATED_WITH-dsyn-rev: @@ -27748,6 +29790,8 @@ components: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' patf-AFFECTS-ortf: @@ -27770,6 +29814,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cgab-CAUSES-dsyn-rev: @@ -27792,6 +29838,8 @@ components: semantic: Disease predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-INTERACTS_WITH-gngm: @@ -27814,6 +29862,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-INTERACTS_WITH-gngm-rev: @@ -27836,6 +29886,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-AFFECTS-neop: @@ -27858,6 +29910,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-AFFECTS-neop-rev: @@ -27880,6 +29934,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PREVENTS-patf: @@ -27900,8 +29956,10 @@ components: outputs: - id: UMLS semantic: PathologicalProcess - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PREVENTS-patf-rev: @@ -27922,8 +29980,10 @@ components: outputs: - id: UMLS semantic: Polypeptide - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-DISRUPTS-phsf: @@ -27946,6 +30006,8 @@ components: semantic: PhysiologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-INHIBITS-nsba: @@ -27968,6 +30030,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -27994,6 +30058,8 @@ components: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-COEXISTS_WITH-inch: @@ -28016,6 +30082,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inpo-CAUSES-sosy: @@ -28038,6 +30106,8 @@ components: semantic: PhenotypicFeature predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inpo-CAUSES-sosy-rev: @@ -28060,6 +30130,8 @@ components: semantic: PathologicalProcess predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' fndg-PREDISPOSES-patf: @@ -28080,8 +30152,10 @@ components: outputs: - id: UMLS semantic: PathologicalProcess - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fndg-PREDISPOSES-patf-rev: @@ -28102,8 +30176,10 @@ components: outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celf-PRODUCES-bacs: @@ -28126,6 +30202,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celf-PRODUCES-bacs-rev: @@ -28148,6 +30226,8 @@ components: semantic: PhysiologicalProcess predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orgf-AFFECTS-ortf: @@ -28170,6 +30250,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-PREVENTS-neop: @@ -28190,8 +30272,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AFFECTS-cell: @@ -28214,6 +30298,8 @@ components: semantic: Cell predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AFFECTS-cell-rev: @@ -28236,6 +30322,8 @@ components: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-STIMULATES-aapp: @@ -28258,6 +30346,8 @@ components: semantic: Polypeptide predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -28284,6 +30374,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -28308,8 +30400,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PREDISPOSES-neop-rev: @@ -28330,8 +30424,10 @@ components: outputs: - id: UMLS semantic: Gene - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-INTERACTS_WITH-hops: @@ -28354,6 +30450,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' neop-OCCURS_IN-aggp-rev: @@ -28376,6 +30474,8 @@ components: semantic: Disease predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-COEXISTS_WITH-aapp_umls: @@ -28398,6 +30498,8 @@ components: semantic: Polypeptide predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-COEXISTS_WITH-aapp_umls-rev: @@ -28420,6 +30522,8 @@ components: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' comd-CAUSES-dsyn-rev: @@ -28442,6 +30546,8 @@ components: semantic: Disease predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-ASSOCIATED_WITH-patf_umls: @@ -28464,6 +30570,8 @@ components: semantic: PathologicalProcess predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-ASSOCIATED_WITH-patf_umls-rev: @@ -28486,6 +30594,8 @@ components: semantic: Gene predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' imft-STIMULATES-gngm: @@ -28508,6 +30618,8 @@ components: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -28534,6 +30646,8 @@ components: semantic: BiologicalEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -28560,6 +30674,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-INHIBITS-orch: @@ -28582,6 +30698,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -28608,6 +30726,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' food-AFFECTS-orgf-rev: @@ -28630,6 +30750,8 @@ components: semantic: Food predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-INTERACTS_WITH-inch: @@ -28652,6 +30774,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-AFFECTS-patf-rev: @@ -28674,6 +30798,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-COMPLICATES-dsyn: @@ -28694,8 +30820,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: exacerbates + predicate: exacerbates_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-COMPLICATES-dsyn-rev: @@ -28716,8 +30844,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: is_exacerbated_by + predicate: condition_exacerbated_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nnon-INTERACTS_WITH-bacs-rev: @@ -28740,6 +30870,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-CAUSES-dsyn_umls-rev: @@ -28762,6 +30894,8 @@ components: semantic: Gene predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' aapp_ncbigene-PART_OF-tisu_umls: @@ -28784,6 +30918,8 @@ components: semantic: GrossAnatomicalStructure predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-AUGMENTS-orgf-rev: @@ -28806,6 +30942,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -28832,6 +30970,8 @@ components: semantic: PhysiologicalProcess predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' horm_umls-STIMULATES-gngm_ncbigene-rev: @@ -28854,6 +30994,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -28880,6 +31022,8 @@ components: semantic: PathologicalProcess predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-ASSOCIATED_WITH-patf-rev: @@ -28902,6 +31046,8 @@ components: semantic: Gene predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs_umls-INTERACTS_WITH-gngm_ncbigene: @@ -28924,6 +31070,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' bacs-AUGMENTS-ortf-rev: @@ -28946,6 +31094,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -28972,6 +31122,8 @@ components: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-INHIBITS-gngm-rev: @@ -28994,6 +31146,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -29020,6 +31174,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' moft-AFFECTS-orgf-rev: @@ -29042,6 +31198,8 @@ components: semantic: MolecularActivity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-ASSOCIATED_WITH-inpo: @@ -29064,6 +31222,8 @@ components: semantic: PathologicalProcess predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf_umls-ASSOCIATED_WITH-gngm_ncbigene: @@ -29086,6 +31246,8 @@ components: semantic: Gene predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' patf_umls-ASSOCIATED_WITH-gngm_ncbigene-rev: @@ -29108,6 +31270,8 @@ components: semantic: PathologicalProcess predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' ortf-AFFECTS-orgf-rev: @@ -29130,6 +31294,8 @@ components: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inbe-PREDISPOSES-dsyn: @@ -29150,8 +31316,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inbe-PREDISPOSES-dsyn-rev: @@ -29172,8 +31340,10 @@ components: outputs: - id: UMLS semantic: Behavior - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celc-LOCATION_OF-strd: @@ -29196,6 +31366,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-PART_OF-bact: @@ -29218,6 +31390,8 @@ components: semantic: Bacterium predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-PART_OF-bact-rev: @@ -29240,6 +31414,8 @@ components: semantic: Cell predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' sosy-COEXISTS_WITH-dsyn: @@ -29262,6 +31438,8 @@ components: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' sosy-COEXISTS_WITH-dsyn-rev: @@ -29284,6 +31462,8 @@ components: semantic: PhenotypicFeature predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-INTERACTS_WITH-aapp-rev: @@ -29306,6 +31486,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-COEXISTS_WITH-gngm_ncbigene-rev: @@ -29328,6 +31510,8 @@ components: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' lipd-STIMULATES-bacs-rev: @@ -29350,6 +31534,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -29376,6 +31562,8 @@ components: semantic: Polypeptide predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' irda-INTERACTS_WITH-aapp-rev: @@ -29398,6 +31586,8 @@ components: semantic: DiagnosticAid predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-AUGMENTS-celc: @@ -29420,6 +31610,8 @@ components: semantic: CellularComponent predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -29446,6 +31638,8 @@ components: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -29470,8 +31664,10 @@ components: outputs: - id: UMLS semantic: PathologicalProcess - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-PREDISPOSES-patf-rev: @@ -29492,8 +31688,10 @@ components: outputs: - id: UMLS semantic: Procedure - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-COEXISTS_WITH-bacs: @@ -29516,6 +31714,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-COEXISTS_WITH-bacs-rev: @@ -29538,6 +31738,8 @@ components: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' elii-INTERACTS_WITH-elii: @@ -29560,6 +31762,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' elii-INTERACTS_WITH-elii-rev: @@ -29582,6 +31786,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' antb-INHIBITS-gngm-rev: @@ -29604,6 +31810,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -29630,6 +31838,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' comd-AFFECTS-celf-rev: @@ -29652,6 +31862,8 @@ components: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' fndg-PREDISPOSES-mobd: @@ -29672,8 +31884,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orgf-PROCESS_OF-aggp: @@ -29696,6 +31910,8 @@ components: semantic: Cohort predicate: occurs_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orgf-PROCESS_OF-aggp-rev: @@ -29718,6 +31934,8 @@ components: semantic: PhysiologicalProcess predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' sosy-CAUSES-dsyn: @@ -29740,6 +31958,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' sosy-CAUSES-dsyn-rev: @@ -29762,6 +31982,8 @@ components: semantic: PhenotypicFeature predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-INTERACTS_WITH-gngm_umls-rev: @@ -29784,6 +32006,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' phsu-TREATS-comd: @@ -29804,8 +32028,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fngs-LOCATION_OF-carb: @@ -29828,6 +32054,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' horm-AFFECTS-bpoc-rev: @@ -29850,6 +32078,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-INTERACTS_WITH-aapp: @@ -29872,6 +32102,8 @@ components: semantic: Polypeptide predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-INTERACTS_WITH-aapp-rev: @@ -29894,6 +32126,8 @@ components: semantic: BiologicalEntity predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-ASSOCIATED_WITH-neop-rev: @@ -29916,6 +32150,8 @@ components: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-COEXISTS_WITH-virs: @@ -29938,6 +32174,8 @@ components: semantic: Virus predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-COEXISTS_WITH-virs-rev: @@ -29960,6 +32198,8 @@ components: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' patf-AFFECTS-celf: @@ -29982,6 +32222,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' anab-COEXISTS_WITH-dsyn-rev: @@ -30001,9 +32243,11 @@ components: AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-STIMULATES-bacs_umls: @@ -30026,6 +32270,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -30052,6 +32298,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -30078,6 +32326,8 @@ components: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' nnon-AUGMENTS-celf-rev: @@ -30100,6 +32350,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -30126,6 +32378,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' neop-COEXISTS_WITH-patf-rev: @@ -30148,6 +32402,8 @@ components: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celc-LOCATION_OF-diap: @@ -30170,6 +32426,8 @@ components: semantic: Procedure predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-LOCATION_OF-diap-rev: @@ -30192,6 +32450,8 @@ components: semantic: CellularComponent predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-PART_OF-cell: @@ -30214,6 +32474,8 @@ components: semantic: Cell predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-PART_OF-cell-rev: @@ -30236,6 +32498,8 @@ components: semantic: NucleicAcidEntity predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-COEXISTS_WITH-hops: @@ -30258,6 +32522,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inch-STIMULATES-gngm-rev: @@ -30280,6 +32546,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -30304,8 +32572,10 @@ components: outputs: - id: UMLS semantic: PathologicalProcess - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' moft-CAUSES-moft: @@ -30328,6 +32598,8 @@ components: semantic: MolecularActivity predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' moft-CAUSES-moft-rev: @@ -30350,6 +32622,8 @@ components: semantic: MolecularActivity predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' medd-TREATS-sosy: @@ -30370,8 +32644,10 @@ components: outputs: - id: UMLS semantic: PhenotypicFeature - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' medd-TREATS-sosy-rev: @@ -30392,8 +32668,10 @@ components: outputs: - id: UMLS semantic: Device - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-ASSOCIATED_WITH-comd: @@ -30416,6 +32694,8 @@ components: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AFFECTS-neop: @@ -30438,6 +32718,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AFFECTS-neop-rev: @@ -30460,6 +32742,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bsoj-LOCATION_OF-cgab: @@ -30482,6 +32766,8 @@ components: semantic: Disease predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-INTERACTS_WITH-lipd: @@ -30504,6 +32790,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' hops-INTERACTS_WITH-aapp-rev: @@ -30526,6 +32814,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bsoj-LOCATION_OF-bsoj: @@ -30548,6 +32838,8 @@ components: semantic: AnatomicalEntity predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bsoj-LOCATION_OF-bsoj-rev: @@ -30570,6 +32862,8 @@ components: semantic: AnatomicalEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-AFFECTS-ortf_umls: @@ -30592,6 +32886,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-CAUSES-celf: @@ -30614,6 +32910,8 @@ components: semantic: PhysiologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-CAUSES-celf-rev: @@ -30636,6 +32934,8 @@ components: semantic: Polypeptide predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-CAUSES-phsf: @@ -30658,6 +32958,8 @@ components: semantic: PhysiologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' lipd-CAUSES-dsyn-rev: @@ -30680,6 +32982,8 @@ components: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' moft_umls-AFFECTS-gngm_ncbigene: @@ -30702,6 +33006,8 @@ components: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' moft_umls-AFFECTS-gngm_ncbigene-rev: @@ -30724,6 +33030,8 @@ components: semantic: MolecularActivity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bsoj-LOCATION_OF-bdsu: @@ -30746,6 +33054,8 @@ components: semantic: AnatomicalEntity predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-CAUSES-dsyn: @@ -30768,6 +33078,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-CAUSES-dsyn-rev: @@ -30790,6 +33102,8 @@ components: semantic: BiologicalEntity predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-COEXISTS_WITH-aapp: @@ -30812,6 +33126,8 @@ components: semantic: Polypeptide predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-COEXISTS_WITH-aapp-rev: @@ -30834,6 +33150,8 @@ components: semantic: NucleicAcidEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-COEXISTS_WITH-gngm: @@ -30856,6 +33174,8 @@ components: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-COEXISTS_WITH-gngm-rev: @@ -30878,6 +33198,8 @@ components: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-DISRUPTS-neop: @@ -30900,6 +33222,8 @@ components: semantic: Disease predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-DISRUPTS-neop-rev: @@ -30922,6 +33246,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' medd-TREATS-anab: @@ -30941,9 +33267,11 @@ components: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease - predicate: treats + semantic: PhenotypicFeature + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs_umls-COEXISTS_WITH-gngm_ncbigene: @@ -30966,6 +33294,8 @@ components: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' bacs_umls-COEXISTS_WITH-gngm_ncbigene-rev: @@ -30988,6 +33318,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-DISRUPTS-patf: @@ -31010,6 +33342,8 @@ components: semantic: PathologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-DISRUPTS-patf-rev: @@ -31032,6 +33366,8 @@ components: semantic: Polypeptide predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-INTERACTS_WITH-aapp-rev: @@ -31054,6 +33390,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-TREATS-acab: @@ -31074,8 +33412,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nsba-AFFECTS-bpoc-rev: @@ -31098,6 +33438,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-AFFECTS-inpo: @@ -31120,6 +33462,8 @@ components: semantic: PathologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nnon-AFFECTS-neop-rev: @@ -31142,6 +33486,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-CAUSES-neop: @@ -31164,6 +33510,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-ASSOCIATED_WITH-patf_umls-rev: @@ -31186,6 +33534,8 @@ components: semantic: Gene predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' orch-AUGMENTS-fndg: @@ -31208,6 +33558,8 @@ components: semantic: DiseaseOrPhenotypicFeature predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -31234,6 +33586,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -31260,6 +33614,8 @@ components: semantic: BiologicalEntity predicate: occurs_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-PROCESS_OF-emod-rev: @@ -31282,6 +33638,8 @@ components: semantic: PathologicalProcess predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bdsu-LOCATION_OF-gngm: @@ -31304,6 +33662,8 @@ components: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bdsu-LOCATION_OF-gngm-rev: @@ -31326,6 +33686,8 @@ components: semantic: AnatomicalEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-INTERACTS_WITH-nnon: @@ -31348,6 +33710,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inbe-AFFECTS-inbe: @@ -31370,6 +33734,8 @@ components: semantic: Behavior predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inbe-AFFECTS-inbe-rev: @@ -31392,6 +33758,8 @@ components: semantic: Behavior predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-LOCATION_OF-phsu: @@ -31414,6 +33782,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-DISRUPTS-neop: @@ -31436,6 +33806,8 @@ components: semantic: Disease predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-DISRUPTS-neop-rev: @@ -31458,6 +33830,8 @@ components: semantic: Polypeptide predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-AUGMENTS-fndg: @@ -31480,6 +33854,8 @@ components: semantic: DiseaseOrPhenotypicFeature predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -31506,6 +33882,8 @@ components: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -31532,6 +33910,8 @@ components: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' virs-INTERACTS_WITH-dsyn: @@ -31554,6 +33934,8 @@ components: semantic: Disease predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' virs-INTERACTS_WITH-dsyn-rev: @@ -31576,6 +33958,8 @@ components: semantic: Virus predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-AFFECTS-celc: @@ -31598,6 +33982,8 @@ components: semantic: CellularComponent predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-AFFECTS-celc-rev: @@ -31620,6 +34006,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-STIMULATES-lipd: @@ -31642,6 +34030,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -31668,6 +34058,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AFFECTS-sosy: @@ -31690,6 +34082,8 @@ components: semantic: PhenotypicFeature predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AFFECTS-sosy-rev: @@ -31712,6 +34106,8 @@ components: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu_umls-INHIBITS-gngm_ncbigene-rev: @@ -31734,6 +34130,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -31760,6 +34158,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' patf-PRECEDES-dsyn: @@ -31782,6 +34182,8 @@ components: semantic: Disease predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-PRECEDES-dsyn-rev: @@ -31804,6 +34206,8 @@ components: semantic: PathologicalProcess predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsf-ASSOCIATED_WITH-phsu: @@ -31826,6 +34230,8 @@ components: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsf-ASSOCIATED_WITH-phsu-rev: @@ -31848,6 +34254,8 @@ components: semantic: PhysiologicalProcess predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-COEXISTS_WITH-aapp: @@ -31870,6 +34278,8 @@ components: semantic: Polypeptide predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-COEXISTS_WITH-aapp-rev: @@ -31892,6 +34302,8 @@ components: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' antb-INTERACTS_WITH-antb: @@ -31914,6 +34326,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' antb-INTERACTS_WITH-antb-rev: @@ -31936,6 +34350,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-PRECEDES-mobd: @@ -31958,6 +34374,8 @@ components: semantic: Disease predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' virs-COEXISTS_WITH-virs: @@ -31980,6 +34398,8 @@ components: semantic: Virus predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' virs-COEXISTS_WITH-virs-rev: @@ -32002,6 +34422,8 @@ components: semantic: Virus predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-LOCATION_OF-eico: @@ -32024,6 +34446,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' strd-PART_OF-bpoc-rev: @@ -32046,6 +34470,8 @@ components: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-CAUSES-sosy-rev: @@ -32068,6 +34494,8 @@ components: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-PREDISPOSES-neop: @@ -32088,8 +34516,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inch-INTERACTS_WITH-bacs-rev: @@ -32112,6 +34542,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-INTERACTS_WITH-virs: @@ -32134,6 +34566,8 @@ components: semantic: Virus predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-INTERACTS_WITH-virs-rev: @@ -32156,6 +34590,8 @@ components: semantic: Disease predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' emst-LOCATION_OF-orch-rev: @@ -32178,6 +34614,8 @@ components: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-AFFECTS-phsf: @@ -32200,6 +34638,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-COEXISTS_WITH-phsu-rev: @@ -32222,6 +34662,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-AUGMENTS-patf: @@ -32244,6 +34686,8 @@ components: semantic: PathologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -32270,6 +34714,8 @@ components: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -32296,6 +34742,8 @@ components: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-INTERACTS_WITH-irda: @@ -32318,6 +34766,8 @@ components: semantic: DiagnosticAid predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-INTERACTS_WITH-irda-rev: @@ -32340,6 +34790,8 @@ components: semantic: Polypeptide predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-AFFECTS-acab: @@ -32362,6 +34814,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PRODUCES-orch: @@ -32384,6 +34838,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PART_OF-emst: @@ -32406,6 +34862,8 @@ components: semantic: GrossAnatomicalStructure predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-AUGMENTS-phsf: @@ -32428,6 +34886,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -32454,6 +34914,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -32480,6 +34942,8 @@ components: semantic: Disease predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-LOCATION_OF-neop-rev: @@ -32502,6 +34966,8 @@ components: semantic: CellularComponent predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-INTERACTS_WITH-nsba: @@ -32524,6 +34990,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-STIMULATES-orch: @@ -32546,6 +35014,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -32572,6 +35042,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' neop-PRECEDES-neop: @@ -32594,6 +35066,8 @@ components: semantic: Disease predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' neop-PRECEDES-neop-rev: @@ -32616,6 +35090,8 @@ components: semantic: Disease predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-STIMULATES-orch: @@ -32638,6 +35114,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -32662,8 +35140,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dora-PREVENTS-dsyn-rev: @@ -32684,8 +35164,10 @@ components: outputs: - id: UMLS semantic: Activity - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-PART_OF-tisu: @@ -32708,6 +35190,8 @@ components: semantic: GrossAnatomicalStructure predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-LOCATION_OF-gngm: @@ -32730,6 +35214,8 @@ components: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-LOCATION_OF-gngm-rev: @@ -32752,6 +35238,8 @@ components: semantic: CellularComponent predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' tisu-AFFECTS-patf: @@ -32774,6 +35262,8 @@ components: semantic: PathologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' tisu-AFFECTS-patf-rev: @@ -32796,6 +35286,8 @@ components: semantic: GrossAnatomicalStructure predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' antb-TREATS-patf-rev: @@ -32816,8 +35308,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-CAUSES-phsf: @@ -32840,6 +35334,8 @@ components: semantic: PhysiologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nsba-ASSOCIATED_WITH-dsyn-rev: @@ -32862,6 +35358,8 @@ components: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' plnt-LOCATION_OF-nusq: @@ -32884,6 +35382,8 @@ components: semantic: NucleicAcidEntity predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' plnt-LOCATION_OF-nusq-rev: @@ -32906,6 +35406,8 @@ components: semantic: Plant predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-AUGMENTS-cell-rev: @@ -32928,6 +35430,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -32954,6 +35458,8 @@ components: semantic: PhenotypicFeature predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-CAUSES-sosy-rev: @@ -32976,6 +35482,8 @@ components: semantic: Gene predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' medd-PREVENTS-dsyn: @@ -32996,8 +35504,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' medd-PREVENTS-dsyn-rev: @@ -33018,8 +35528,10 @@ components: outputs: - id: UMLS semantic: Device - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-COEXISTS_WITH-gngm: @@ -33042,6 +35554,8 @@ components: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-COEXISTS_WITH-gngm-rev: @@ -33064,6 +35578,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-AFFECTS-dsyn-rev: @@ -33086,6 +35602,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-INTERACTS_WITH-bacs-rev: @@ -33108,6 +35626,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-INTERACTS_WITH-inch: @@ -33130,6 +35650,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AFFECTS-comd: @@ -33152,6 +35674,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-ASSOCIATED_WITH-mobd: @@ -33174,6 +35698,8 @@ components: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-DISRUPTS-patf: @@ -33196,6 +35722,8 @@ components: semantic: PathologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-DISRUPTS-patf-rev: @@ -33218,6 +35746,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-DISRUPTS-moft_umls: @@ -33240,6 +35770,8 @@ components: semantic: MolecularActivity predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-DISRUPTS-moft_umls-rev: @@ -33262,6 +35794,8 @@ components: semantic: Gene predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' inbe-PREDISPOSES-neop: @@ -33282,8 +35816,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-DISRUPTS-phsf: @@ -33306,6 +35842,8 @@ components: semantic: PhysiologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' lipd-TREATS-dsyn-rev: @@ -33326,8 +35864,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-DISRUPTS-moft-rev: @@ -33350,6 +35890,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-AUGMENTS-dsyn: @@ -33372,6 +35914,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -33398,6 +35942,8 @@ components: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -33424,6 +35970,8 @@ components: semantic: NucleicAcidEntity predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-LOCATION_OF-nusq-rev: @@ -33446,6 +35994,8 @@ components: semantic: CellularComponent predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-PRODUCES-horm: @@ -33468,6 +36018,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-PRODUCES-horm-rev: @@ -33490,6 +36042,8 @@ components: semantic: GrossAnatomicalStructure predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-CAUSES-patf-rev: @@ -33512,6 +36066,8 @@ components: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-LOCATION_OF-fngs: @@ -33534,6 +36090,8 @@ components: semantic: Fungus predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-LOCATION_OF-fngs-rev: @@ -33556,6 +36114,8 @@ components: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' elii-AFFECTS-orgf-rev: @@ -33578,6 +36138,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' food-PREDISPOSES-dsyn: @@ -33598,8 +36160,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' food-PREDISPOSES-dsyn-rev: @@ -33620,8 +36184,10 @@ components: outputs: - id: UMLS semantic: Food - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-DISRUPTS-orgf_umls: @@ -33644,6 +36210,8 @@ components: semantic: PhysiologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' mobd-AFFECTS-mobd: @@ -33666,6 +36234,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' mobd-AFFECTS-mobd-rev: @@ -33688,6 +36258,8 @@ components: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' patf-PRECEDES-patf: @@ -33710,6 +36282,8 @@ components: semantic: PathologicalProcess predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-PRECEDES-patf-rev: @@ -33732,6 +36306,8 @@ components: semantic: PathologicalProcess predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' ortf-AFFECTS-patf-rev: @@ -33754,6 +36330,8 @@ components: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-PART_OF-nusq: @@ -33776,6 +36354,8 @@ components: semantic: NucleicAcidEntity predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PART_OF-nusq-rev: @@ -33798,6 +36378,8 @@ components: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd-TREATS-dsyn-rev: @@ -33818,8 +36400,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch_umls-INTERACTS_WITH-aapp_ncbigene-rev: @@ -33842,6 +36426,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-AFFECTS-bpoc_umls: @@ -33864,6 +36450,8 @@ components: semantic: GrossAnatomicalStructure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-AFFECTS-bpoc_umls-rev: @@ -33886,6 +36474,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' lipd-COEXISTS_WITH-bacs-rev: @@ -33908,6 +36498,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-PREVENTS-neop: @@ -33928,8 +36520,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' emst-LOCATION_OF-neop-rev: @@ -33952,6 +36546,8 @@ components: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-AFFECTS-fndg_umls: @@ -33974,6 +36570,8 @@ components: semantic: DiseaseOrPhenotypicFeature predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-AFFECTS-fndg_umls-rev: @@ -33996,6 +36594,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' orgf-PRODUCES-bacs-rev: @@ -34018,6 +36618,8 @@ components: semantic: PhysiologicalProcess predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-ASSOCIATED_WITH-mobd: @@ -34040,6 +36642,8 @@ components: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-AFFECTS-biof: @@ -34062,6 +36666,8 @@ components: semantic: Phenomenon predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-AFFECTS-biof-rev: @@ -34084,6 +36690,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-AFFECTS-phsf: @@ -34106,6 +36714,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-ASSOCIATED_WITH-bact: @@ -34128,6 +36738,8 @@ components: semantic: Bacterium predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-ASSOCIATED_WITH-bact-rev: @@ -34150,6 +36762,8 @@ components: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' irda-CAUSES-dsyn: @@ -34172,6 +36786,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' irda-CAUSES-dsyn-rev: @@ -34194,6 +36810,8 @@ components: semantic: DiagnosticAid predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-PRODUCES-aapp_ncbigene: @@ -34216,6 +36834,8 @@ components: semantic: Gene predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' gngm_ncbigene-PRODUCES-aapp_ncbigene-rev: @@ -34238,6 +36858,8 @@ components: semantic: Gene predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' emst-PART_OF-cell: @@ -34260,6 +36882,8 @@ components: semantic: Cell predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' emst-PART_OF-cell-rev: @@ -34282,6 +36906,8 @@ components: semantic: GrossAnatomicalStructure predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-PRODUCES-bacs: @@ -34304,6 +36930,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' lipd-STIMULATES-aapp-rev: @@ -34326,6 +36954,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -34352,6 +36982,8 @@ components: semantic: BiologicalEntity predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-LOCATION_OF-emod-rev: @@ -34374,6 +37006,8 @@ components: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-AUGMENTS-dsyn: @@ -34396,6 +37030,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -34422,6 +37058,8 @@ components: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -34448,6 +37086,8 @@ components: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-COEXISTS_WITH-bacs_umls: @@ -34470,6 +37110,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-COEXISTS_WITH-bacs_umls-rev: @@ -34492,6 +37134,8 @@ components: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' imft-PART_OF-tisu: @@ -34514,6 +37158,8 @@ components: semantic: GrossAnatomicalStructure predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-PART_OF-tisu-rev: @@ -34536,6 +37182,8 @@ components: semantic: BiologicalEntity predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-STIMULATES-gngm-rev: @@ -34558,6 +37206,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -34584,6 +37234,8 @@ components: semantic: PathologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' virs-CAUSES-patf-rev: @@ -34606,6 +37258,8 @@ components: semantic: Virus predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' acab-PART_OF-bact: @@ -34628,6 +37282,8 @@ components: semantic: Bacterium predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' acab-PART_OF-bact-rev: @@ -34650,6 +37306,8 @@ components: semantic: Disease predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-PREDISPOSES-mobd: @@ -34670,8 +37328,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-AFFECTS-tisu: @@ -34694,6 +37354,8 @@ components: semantic: GrossAnatomicalStructure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-INTERACTS_WITH-hops: @@ -34716,6 +37378,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-DISRUPTS-moft_umls-rev: @@ -34738,6 +37402,8 @@ components: semantic: Gene predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' virs-INTERACTS_WITH-virs: @@ -34760,6 +37426,8 @@ components: semantic: Virus predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' virs-INTERACTS_WITH-virs-rev: @@ -34782,6 +37450,8 @@ components: semantic: Virus predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-STIMULATES-phsu: @@ -34804,6 +37474,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -34830,6 +37502,8 @@ components: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu_umls-STIMULATES-gngm_ncbigene-rev: @@ -34852,6 +37526,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -34878,6 +37554,8 @@ components: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-PREDISPOSES-patf: @@ -34898,8 +37576,10 @@ components: outputs: - id: UMLS semantic: PathologicalProcess - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-PREDISPOSES-patf-rev: @@ -34920,8 +37600,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' elii-CAUSES-dsyn-rev: @@ -34944,6 +37626,8 @@ components: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-AFFECTS-sosy: @@ -34966,6 +37650,8 @@ components: semantic: PhenotypicFeature predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-AFFECTS-sosy-rev: @@ -34988,6 +37674,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bact-LOCATION_OF-lipd: @@ -35010,6 +37698,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-COEXISTS_WITH-lipd: @@ -35032,6 +37722,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-STIMULATES-nsba: @@ -35054,6 +37746,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -35080,6 +37774,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -35106,6 +37802,8 @@ components: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' comd-AFFECTS-patf-rev: @@ -35128,6 +37826,8 @@ components: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' food-PREDISPOSES-neop: @@ -35148,8 +37848,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu_ncbigene-TREATS-dsyn_umls-rev: @@ -35170,8 +37872,10 @@ components: outputs: - id: NCBIGene semantic: Gene - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' aapp_ncbigene-STIMULATES-aapp_umls: @@ -35194,6 +37898,8 @@ components: semantic: Polypeptide predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -35220,6 +37926,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -35244,8 +37952,10 @@ components: outputs: - id: UMLS semantic: PathologicalProcess - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-PART_OF-bpoc: @@ -35268,6 +37978,8 @@ components: semantic: GrossAnatomicalStructure predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AUGMENTS-neop: @@ -35290,6 +38002,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -35316,6 +38030,8 @@ components: semantic: PathologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-CAUSES-patf-rev: @@ -35338,6 +38054,8 @@ components: semantic: BiologicalEntity predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-INTERACTS_WITH-orch: @@ -35360,6 +38078,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-COEXISTS_WITH-imft: @@ -35382,6 +38102,8 @@ components: semantic: BiologicalEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-COEXISTS_WITH-imft-rev: @@ -35404,6 +38126,8 @@ components: semantic: Polypeptide predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-COEXISTS_WITH-bacs_umls-rev: @@ -35426,6 +38150,8 @@ components: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' orgf-AFFECTS-phsf: @@ -35448,6 +38174,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' mobd-AFFECTS-inbe: @@ -35470,6 +38198,8 @@ components: semantic: Behavior predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' mobd-AFFECTS-inbe-rev: @@ -35492,6 +38222,8 @@ components: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-AUGMENTS-ortf_umls: @@ -35514,6 +38246,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -35540,6 +38274,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' food-AFFECTS-dsyn-rev: @@ -35562,6 +38298,8 @@ components: semantic: Food predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' mobd-OCCURS_IN-aggp-rev: @@ -35584,6 +38322,8 @@ components: semantic: Disease predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops_umls-STIMULATES-gngm_ncbigene-rev: @@ -35606,6 +38346,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -35632,6 +38374,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' lipd-PART_OF-cell-rev: @@ -35654,6 +38398,8 @@ components: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' medd-TREATS-mobd: @@ -35674,8 +38420,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bact-INTERACTS_WITH-bact: @@ -35698,6 +38446,8 @@ components: semantic: Bacterium predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bact-INTERACTS_WITH-bact-rev: @@ -35720,6 +38470,8 @@ components: semantic: Bacterium predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell-INTERACTS_WITH-aapp: @@ -35742,6 +38494,8 @@ components: semantic: Polypeptide predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-INTERACTS_WITH-aapp-rev: @@ -35764,6 +38518,8 @@ components: semantic: Cell predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-PREDISPOSES-dsyn-rev: @@ -35784,8 +38540,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' clnd-TREATS-dsyn: @@ -35806,8 +38564,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' clnd-TREATS-dsyn-rev: @@ -35828,8 +38588,10 @@ components: outputs: - id: UMLS semantic: Drug - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dora-TREATS-sosy: @@ -35850,8 +38612,10 @@ components: outputs: - id: UMLS semantic: PhenotypicFeature - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dora-TREATS-sosy-rev: @@ -35872,8 +38636,10 @@ components: outputs: - id: UMLS semantic: Activity - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' antb-COEXISTS_WITH-antb: @@ -35896,6 +38662,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' antb-COEXISTS_WITH-antb-rev: @@ -35918,6 +38686,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celc-LOCATION_OF-fngs: @@ -35940,6 +38710,8 @@ components: semantic: Fungus predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-LOCATION_OF-fngs-rev: @@ -35962,6 +38734,8 @@ components: semantic: CellularComponent predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-INHIBITS-gngm-rev: @@ -35984,6 +38758,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -36010,6 +38786,8 @@ components: semantic: PathologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inch-AUGMENTS-celf-rev: @@ -36032,6 +38810,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -36058,6 +38838,8 @@ components: semantic: MolecularActivity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-AFFECTS-moft-rev: @@ -36080,6 +38862,8 @@ components: semantic: Procedure predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-AUGMENTS-orgf_umls: @@ -36102,6 +38886,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -36126,8 +38912,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' carb-INTERACTS_WITH-bacs-rev: @@ -36150,6 +38938,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bdsu-LOCATION_OF-phsu: @@ -36172,6 +38962,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-STIMULATES-bacs_umls-rev: @@ -36194,6 +38986,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -36220,6 +39014,8 @@ components: semantic: Bacterium predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' emst-PART_OF-bact-rev: @@ -36242,6 +39038,8 @@ components: semantic: GrossAnatomicalStructure predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' ortf-AFFECTS-orga-rev: @@ -36264,6 +39062,8 @@ components: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-AFFECTS-orgf-rev: @@ -36286,6 +39086,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-INTERACTS_WITH-horm_umls: @@ -36308,6 +39110,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-DISRUPTS-cell: @@ -36330,6 +39134,8 @@ components: semantic: Cell predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-DISRUPTS-cell-rev: @@ -36352,6 +39158,8 @@ components: semantic: Disease predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' irda-INTERACTS_WITH-bacs: @@ -36374,6 +39182,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' irda-INTERACTS_WITH-bacs-rev: @@ -36396,6 +39206,8 @@ components: semantic: DiagnosticAid predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm_umls-INTERACTS_WITH-aapp_ncbigene-rev: @@ -36418,6 +39230,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' medd-TREATS-acab: @@ -36438,8 +39252,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-ADMINISTERED_TO-cell_umls: @@ -36462,6 +39278,8 @@ components: semantic: Cell predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-ADMINISTERED_TO-cell_umls-rev: @@ -36484,6 +39302,8 @@ components: semantic: Gene predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' cell-PART_OF-virs: @@ -36506,6 +39326,8 @@ components: semantic: Virus predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-PART_OF-virs-rev: @@ -36528,6 +39350,8 @@ components: semantic: Cell predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' food-CAUSES-patf: @@ -36550,6 +39374,8 @@ components: semantic: PathologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' food-CAUSES-patf-rev: @@ -36572,6 +39398,8 @@ components: semantic: Food predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-AFFECTS-ortf: @@ -36594,6 +39422,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inch-COEXISTS_WITH-elii: @@ -36616,6 +39446,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-STIMULATES-horm_umls: @@ -36638,6 +39470,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -36664,6 +39498,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nsba-INHIBITS-gngm-rev: @@ -36686,6 +39522,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -36712,6 +39550,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' tisu-PART_OF-bact-rev: @@ -36734,6 +39574,8 @@ components: semantic: GrossAnatomicalStructure predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celc-LOCATION_OF-bacs: @@ -36756,6 +39598,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bdsu_umls-LOCATION_OF-gngm_ncbigene: @@ -36778,6 +39622,8 @@ components: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' gngm_ncbigene-AFFECTS-patf_umls: @@ -36800,6 +39646,8 @@ components: semantic: PathologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-AFFECTS-patf_umls-rev: @@ -36822,6 +39670,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' dsyn-CAUSES-acab: @@ -36844,6 +39694,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-PRODUCES-bacs: @@ -36866,6 +39718,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-PRODUCES-bacs-rev: @@ -36888,6 +39742,8 @@ components: semantic: CellularComponent predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' neop_umls-PRODUCES-aapp_ncbigene: @@ -36910,6 +39766,8 @@ components: semantic: Gene predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' neop_umls-PRODUCES-aapp_ncbigene-rev: @@ -36932,6 +39790,8 @@ components: semantic: Disease predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-INTERACTS_WITH-aapp-rev: @@ -36954,6 +39814,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-INHIBITS-aapp-rev: @@ -36976,6 +39838,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -37002,6 +39866,8 @@ components: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' virs-LOCATION_OF-bacs: @@ -37024,6 +39890,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' virs-LOCATION_OF-bacs-rev: @@ -37046,6 +39914,8 @@ components: semantic: Virus predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' patf-AFFECTS-neop: @@ -37068,6 +39938,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' elii-STIMULATES-gngm-rev: @@ -37090,6 +39962,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -37116,6 +39990,8 @@ components: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nnon-AFFECTS-celf-rev: @@ -37138,6 +40014,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' acab-LOCATION_OF-neop: @@ -37160,6 +40038,8 @@ components: semantic: Disease predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' acab-LOCATION_OF-neop-rev: @@ -37182,6 +40062,8 @@ components: semantic: Disease predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' patf-COEXISTS_WITH-acab: @@ -37204,6 +40086,8 @@ components: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' mobd-AFFECTS-orgf-rev: @@ -37226,6 +40110,8 @@ components: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-DISRUPTS-bpoc: @@ -37248,6 +40134,8 @@ components: semantic: GrossAnatomicalStructure predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-DISRUPTS-bpoc-rev: @@ -37270,6 +40158,8 @@ components: semantic: Polypeptide predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celf-AFFECTS-orga-rev: @@ -37292,6 +40182,8 @@ components: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-PART_OF-bpoc: @@ -37314,6 +40206,8 @@ components: semantic: GrossAnatomicalStructure predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-PART_OF-bpoc-rev: @@ -37336,6 +40230,8 @@ components: semantic: NucleicAcidEntity predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-INHIBITS-gngm-rev: @@ -37358,6 +40254,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -37382,8 +40280,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dora-PREDISPOSES-dsyn-rev: @@ -37404,8 +40304,10 @@ components: outputs: - id: UMLS semantic: Activity - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-AUGMENTS-moft-rev: @@ -37428,6 +40330,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -37454,6 +40358,8 @@ components: semantic: Fungus predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-PART_OF-fngs-rev: @@ -37476,6 +40382,8 @@ components: semantic: Cell predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' sosy-PREDISPOSES-dsyn: @@ -37496,8 +40404,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' sosy-PREDISPOSES-dsyn-rev: @@ -37518,8 +40428,10 @@ components: outputs: - id: UMLS semantic: PhenotypicFeature - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' medd-CAUSES-dsyn: @@ -37542,6 +40454,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' medd-CAUSES-dsyn-rev: @@ -37564,6 +40478,8 @@ components: semantic: Device predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-INTERACTS_WITH-orch_umls: @@ -37586,6 +40502,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' mobd-MANIFESTATION_OF-dsyn: @@ -37608,6 +40526,8 @@ components: semantic: Disease predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' mobd-MANIFESTATION_OF-dsyn-rev: @@ -37630,6 +40550,8 @@ components: semantic: Disease predicate: has_manifestation source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celc-PRODUCES-aapp: @@ -37652,6 +40574,8 @@ components: semantic: Polypeptide predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-PRODUCES-aapp-rev: @@ -37674,6 +40598,8 @@ components: semantic: CellularComponent predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-USES-clnd: @@ -37696,6 +40622,8 @@ components: semantic: Drug predicate: has_input source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-USES-clnd-rev: @@ -37718,6 +40646,8 @@ components: semantic: Procedure predicate: is_input_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inbe-AFFECTS-orgf: @@ -37740,6 +40670,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inbe-AFFECTS-orgf-rev: @@ -37762,6 +40694,8 @@ components: semantic: Behavior predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' medd-PREVENTS-patf: @@ -37782,8 +40716,10 @@ components: outputs: - id: UMLS semantic: PathologicalProcess - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' medd-PREVENTS-patf-rev: @@ -37804,8 +40740,10 @@ components: outputs: - id: UMLS semantic: Device - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-CAUSES-patf_umls: @@ -37828,6 +40766,8 @@ components: semantic: PathologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-CAUSES-patf_umls-rev: @@ -37850,6 +40790,8 @@ components: semantic: Gene predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' antb-STIMULATES-gngm-rev: @@ -37872,6 +40814,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -37898,6 +40842,8 @@ components: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-ASSOCIATED_WITH-neop-rev: @@ -37920,6 +40866,8 @@ components: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' patf-COMPLICATES-dsyn: @@ -37940,8 +40888,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: exacerbates + predicate: exacerbates_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-COMPLICATES-dsyn-rev: @@ -37962,8 +40912,10 @@ components: outputs: - id: UMLS semantic: PathologicalProcess - predicate: is_exacerbated_by + predicate: condition_exacerbated_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-COEXISTS_WITH-anab: @@ -37983,9 +40935,11 @@ components: _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-STIMULATES-aapp-rev: @@ -38008,6 +40962,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -38034,6 +40990,8 @@ components: semantic: PhysiologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' lipd-AFFECTS-celf-rev: @@ -38056,6 +41014,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-AFFECTS-phsf_umls: @@ -38078,6 +41038,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' comd-AFFECTS-dsyn-rev: @@ -38100,6 +41062,8 @@ components: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-CAUSES-sosy-rev: @@ -38122,6 +41086,8 @@ components: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-COEXISTS_WITH-bacs-rev: @@ -38144,6 +41110,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-AFFECTS-orgf-rev: @@ -38166,6 +41134,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-PREDISPOSES-dsyn_umls: @@ -38186,8 +41156,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-PREDISPOSES-dsyn_umls-rev: @@ -38208,8 +41180,10 @@ components: outputs: - id: NCBIGene semantic: Gene - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' horm-AFFECTS-cell-rev: @@ -38232,6 +41206,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-DISRUPTS-orgf: @@ -38254,6 +41230,8 @@ components: semantic: PhysiologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_umls-COEXISTS_WITH-gngm_ncbigene: @@ -38276,6 +41254,8 @@ components: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' gngm_umls-COEXISTS_WITH-gngm_ncbigene-rev: @@ -38298,6 +41278,8 @@ components: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-STIMULATES-bacs-rev: @@ -38320,6 +41302,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -38346,6 +41330,8 @@ components: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celf-COEXISTS_WITH-neop-rev: @@ -38368,6 +41354,8 @@ components: semantic: PhysiologicalProcess predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-INTERACTS_WITH-irda: @@ -38390,6 +41378,8 @@ components: semantic: DiagnosticAid predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-INTERACTS_WITH-irda-rev: @@ -38412,6 +41402,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-DISRUPTS-dsyn: @@ -38434,6 +41426,8 @@ components: semantic: Disease predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-LOCATION_OF-nusq: @@ -38456,6 +41450,8 @@ components: semantic: NucleicAcidEntity predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-LOCATION_OF-nusq-rev: @@ -38478,6 +41474,8 @@ components: semantic: Cell predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inbe-PROCESS_OF-aggp: @@ -38500,6 +41498,8 @@ components: semantic: Cohort predicate: occurs_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inbe-PROCESS_OF-aggp-rev: @@ -38522,6 +41522,8 @@ components: semantic: Behavior predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-COEXISTS_WITH-comd: @@ -38544,6 +41546,8 @@ components: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-AFFECTS-patf_umls-rev: @@ -38566,6 +41570,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' bacs-PART_OF-emst: @@ -38588,6 +41594,8 @@ components: semantic: GrossAnatomicalStructure predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nnon-AUGMENTS-cell-rev: @@ -38610,12 +41618,38 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased + anab-LOCATION_OF-neop: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:neop AND + _exists_:object.umls AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Disease + predicate: location_of + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' anab-LOCATION_OF-neop-rev: - supportBatch: True useTemplating: True @@ -38633,9 +41667,11 @@ components: _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-INHIBITS-gngm_umls-rev: @@ -38658,6 +41694,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -38682,8 +41720,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' sosy-CAUSES-orgf: @@ -38706,6 +41746,8 @@ components: semantic: PhysiologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' sosy-CAUSES-orgf-rev: @@ -38728,6 +41770,8 @@ components: semantic: PhenotypicFeature predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' elii-CAUSES-inpo-rev: @@ -38750,6 +41794,8 @@ components: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq_umls-COEXISTS_WITH-gngm_ncbigene: @@ -38772,6 +41818,8 @@ components: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' nusq_umls-COEXISTS_WITH-gngm_ncbigene-rev: @@ -38794,6 +41842,8 @@ components: semantic: NucleicAcidEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PREDISPOSES-comd: @@ -38814,8 +41864,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' neop-AFFECTS-virs: @@ -38838,6 +41890,8 @@ components: semantic: Virus predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' neop-AFFECTS-virs-rev: @@ -38860,6 +41914,8 @@ components: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-CONVERTS_TO-gngm: @@ -38882,6 +41938,8 @@ components: semantic: Gene predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-CONVERTS_TO-gngm-rev: @@ -38904,6 +41962,8 @@ components: semantic: Polypeptide predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-AUGMENTS-bpoc_umls: @@ -38926,6 +41986,8 @@ components: semantic: GrossAnatomicalStructure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -38952,6 +42014,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -38978,6 +42042,8 @@ components: semantic: CellularComponent predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -39004,6 +42070,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -39030,6 +42098,8 @@ components: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-CONVERTS_TO-bacs: @@ -39052,6 +42122,8 @@ components: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-CONVERTS_TO-bacs-rev: @@ -39074,6 +42146,8 @@ components: semantic: Polypeptide predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bact-INTERACTS_WITH-aapp: @@ -39096,6 +42170,8 @@ components: semantic: Polypeptide predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bact-INTERACTS_WITH-aapp-rev: @@ -39118,6 +42194,8 @@ components: semantic: Bacterium predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nsba-PART_OF-cell-rev: @@ -39140,6 +42218,8 @@ components: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-DISRUPTS-moft: @@ -39162,6 +42242,8 @@ components: semantic: MolecularActivity predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-DISRUPTS-moft-rev: @@ -39184,6 +42266,8 @@ components: semantic: Gene predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-ASSOCIATED_WITH-patf-rev: @@ -39206,6 +42290,8 @@ components: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-INTERACTS_WITH-carb: @@ -39228,6 +42314,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-STIMULATES-inch: @@ -39250,6 +42338,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -39276,6 +42366,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-CAUSES-patf-rev: @@ -39298,6 +42390,8 @@ components: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell-LOCATION_OF-phsu: @@ -39320,6 +42414,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-STIMULATES-aapp_umls-rev: @@ -39342,6 +42438,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -39368,6 +42466,8 @@ components: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' elii-COEXISTS_WITH-aapp-rev: @@ -39390,6 +42490,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-STIMULATES-nsba: @@ -39412,6 +42514,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -39438,6 +42542,8 @@ components: semantic: Gene predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-PRODUCES-gngm-rev: @@ -39460,6 +42566,8 @@ components: semantic: Cell predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nsba-CAUSES-patf-rev: @@ -39482,6 +42590,8 @@ components: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nsba-AUGMENTS-ortf-rev: @@ -39504,6 +42614,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -39530,6 +42642,8 @@ components: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' nnon-CAUSES-dsyn-rev: @@ -39552,6 +42666,8 @@ components: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bdsu-CAUSES-dsyn: @@ -39574,6 +42690,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bdsu-CAUSES-dsyn-rev: @@ -39596,6 +42714,8 @@ components: semantic: AnatomicalEntity predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bact-LOCATION_OF-nusq: @@ -39618,6 +42738,8 @@ components: semantic: NucleicAcidEntity predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bact-LOCATION_OF-nusq-rev: @@ -39640,6 +42762,8 @@ components: semantic: Bacterium predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-DISRUPTS-cell: @@ -39662,6 +42786,8 @@ components: semantic: Cell predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-DISRUPTS-cell-rev: @@ -39684,6 +42810,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' eico-PART_OF-bpoc-rev: @@ -39706,6 +42834,8 @@ components: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-INTERACTS_WITH-bacs-rev: @@ -39728,6 +42858,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-STIMULATES-bacs-rev: @@ -39750,6 +42882,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -39776,6 +42910,8 @@ components: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-STIMULATES-elii: @@ -39798,6 +42934,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -39824,6 +42962,8 @@ components: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-AUGMENTS-tisu: @@ -39846,6 +42986,8 @@ components: semantic: GrossAnatomicalStructure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -39872,6 +43014,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' phsu-AFFECTS-patf-rev: @@ -39894,6 +43038,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celc_umls-LOCATION_OF-gngm_ncbigene: @@ -39916,6 +43062,8 @@ components: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' nsba-STIMULATES-bacs-rev: @@ -39938,6 +43086,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -39964,6 +43114,8 @@ components: semantic: Gene predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' antb-INTERACTS_WITH-aapp-rev: @@ -39986,6 +43138,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-PRODUCES-bacs_umls: @@ -40008,6 +43162,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-PRODUCES-bacs_umls-rev: @@ -40030,6 +43186,8 @@ components: semantic: Gene predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' eico-STIMULATES-gngm-rev: @@ -40052,6 +43210,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -40078,6 +43238,8 @@ components: semantic: Disease predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-DISRUPTS-neop-rev: @@ -40100,6 +43262,8 @@ components: semantic: Gene predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-AUGMENTS-ortf: @@ -40122,6 +43286,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -40148,6 +43314,8 @@ components: semantic: BiologicalEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -40174,6 +43342,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -40200,6 +43370,8 @@ components: semantic: Procedure predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-AUGMENTS-comd: @@ -40222,6 +43394,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -40248,6 +43422,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -40274,6 +43450,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' antb-PREVENTS-dsyn-rev: @@ -40294,8 +43472,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' irda-CAUSES-patf: @@ -40318,6 +43498,8 @@ components: semantic: PathologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' irda-CAUSES-patf-rev: @@ -40340,6 +43522,8 @@ components: semantic: DiagnosticAid predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' virs_umls-LOCATION_OF-aapp_ncbigene: @@ -40362,6 +43546,8 @@ components: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' virs_umls-LOCATION_OF-aapp_ncbigene-rev: @@ -40384,6 +43570,8 @@ components: semantic: Virus predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' patf-PRODUCES-bacs: @@ -40406,6 +43594,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-PRODUCES-bacs-rev: @@ -40428,6 +43618,8 @@ components: semantic: PathologicalProcess predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-INTERACTS_WITH-nnon_umls: @@ -40450,6 +43642,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-COEXISTS_WITH-cgab: @@ -40472,6 +43666,8 @@ components: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-COEXISTS_WITH-aapp: @@ -40494,6 +43690,8 @@ components: semantic: Polypeptide predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-COEXISTS_WITH-aapp-rev: @@ -40516,6 +43714,8 @@ components: semantic: BiologicalEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-DISRUPTS-neop-rev: @@ -40538,6 +43738,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celf-PRODUCES-imft: @@ -40560,6 +43762,8 @@ components: semantic: BiologicalEntity predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celf-PRODUCES-imft-rev: @@ -40582,6 +43786,8 @@ components: semantic: PhysiologicalProcess predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-COEXISTS_WITH-carb: @@ -40604,6 +43810,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsf-AFFECTS-dsyn-rev: @@ -40626,6 +43834,8 @@ components: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-PREDISPOSES-dsyn-rev: @@ -40646,8 +43856,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' sosy-CAUSES-sosy: @@ -40670,6 +43882,8 @@ components: semantic: PhenotypicFeature predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' sosy-CAUSES-sosy-rev: @@ -40692,6 +43906,8 @@ components: semantic: PhenotypicFeature predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-PREVENTS-inpo-rev: @@ -40712,8 +43928,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-INHIBITS-horm: @@ -40736,6 +43954,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -40762,6 +43982,8 @@ components: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-CONVERTS_TO-orch-rev: @@ -40784,6 +44006,8 @@ components: semantic: SmallMolecule predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-AFFECTS-patf: @@ -40806,6 +44030,8 @@ components: semantic: PathologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AFFECTS-patf-rev: @@ -40828,6 +44054,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' patf-COEXISTS_WITH-anab: @@ -40847,11 +44075,37 @@ components: _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' + patf-COEXISTS_WITH-anab-rev: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: object.umls + parameters: + fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:patf + AND _exists_:subject.umls AND pmid_count:>3 + outputs: + - id: UMLS + semantic: PathologicalProcess + predicate: coexists_with + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-AUGMENTS-bpoc-rev: - supportBatch: True useTemplating: True @@ -40872,6 +44126,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -40898,6 +44154,8 @@ components: semantic: NucleicAcidEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-COEXISTS_WITH-nusq-rev: @@ -40920,6 +44178,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-LOCATION_OF-horm: @@ -40942,6 +44202,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' neop-AFFECTS-patf-rev: @@ -40964,6 +44226,8 @@ components: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-CONVERTS_TO-bacs: @@ -40986,6 +44250,8 @@ components: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-CONVERTS_TO-bacs-rev: @@ -41008,6 +44274,8 @@ components: semantic: SmallMolecule predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-COEXISTS_WITH-aapp_ncbigene: @@ -41030,6 +44298,8 @@ components: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' gngm_ncbigene-AFFECTS-dsyn_umls: @@ -41052,6 +44322,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-AFFECTS-dsyn_umls-rev: @@ -41074,6 +44346,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' plnt-LOCATION_OF-bacs: @@ -41096,6 +44370,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' ortf-PROCESS_OF-aggp-rev: @@ -41118,6 +44394,8 @@ components: semantic: PhysiologicalProcess predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-PART_OF-celc: @@ -41140,6 +44418,8 @@ components: semantic: CellularComponent predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-PART_OF-celc-rev: @@ -41162,6 +44442,8 @@ components: semantic: Protein predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celf-AFFECTS-comd: @@ -41184,6 +44466,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celf-AFFECTS-biof: @@ -41206,6 +44490,8 @@ components: semantic: Phenomenon predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celf-AFFECTS-biof-rev: @@ -41228,6 +44514,8 @@ components: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-STIMULATES-bacs-rev: @@ -41250,6 +44538,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -41276,6 +44566,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' horm-COEXISTS_WITH-horm-rev: @@ -41298,6 +44590,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-ASSOCIATED_WITH-comd: @@ -41320,6 +44614,8 @@ components: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' horm-AFFECTS-moft-rev: @@ -41342,6 +44638,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inpo-OCCURS_IN-aggp: @@ -41364,6 +44662,8 @@ components: semantic: Cohort predicate: occurs_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inpo-OCCURS_IN-aggp-rev: @@ -41386,6 +44686,8 @@ components: semantic: PathologicalProcess predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' patf-OCCURS_IN-aggp-rev: @@ -41408,6 +44710,8 @@ components: semantic: PathologicalProcess predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-LOCATION_OF-nusq: @@ -41430,6 +44734,8 @@ components: semantic: NucleicAcidEntity predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-LOCATION_OF-nusq-rev: @@ -41452,6 +44758,8 @@ components: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orgf-PRECEDES-ortf: @@ -41474,6 +44782,8 @@ components: semantic: PhysiologicalProcess predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-TREATS-neop: @@ -41494,8 +44804,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-CAUSES-inpo_umls: @@ -41518,6 +44830,8 @@ components: semantic: PathologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' anst-PART_OF-virs: @@ -41540,6 +44854,8 @@ components: semantic: Virus predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' anst-PART_OF-virs-rev: @@ -41562,6 +44878,8 @@ components: semantic: AnatomicalEntity predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-AFFECTS-celc_umls: @@ -41584,6 +44902,8 @@ components: semantic: CellularComponent predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-AFFECTS-celc_umls-rev: @@ -41606,6 +44926,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' aapp-DISRUPTS-tisu: @@ -41628,6 +44950,8 @@ components: semantic: GrossAnatomicalStructure predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' horm-COEXISTS_WITH-aapp-rev: @@ -41650,6 +44974,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-AFFECTS-comd: @@ -41672,6 +44998,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-INHIBITS-aapp-rev: @@ -41694,6 +45022,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -41720,6 +45050,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-DISRUPTS-ortf: @@ -41742,6 +45074,8 @@ components: semantic: PhysiologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-PREVENTS-mobd: @@ -41762,8 +45096,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-STIMULATES-eico: @@ -41786,6 +45122,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -41812,6 +45150,8 @@ components: semantic: BiologicalEntity predicate: occurs_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celf-PROCESS_OF-emod-rev: @@ -41834,6 +45174,8 @@ components: semantic: PhysiologicalProcess predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-PREDISPOSES-dsyn: @@ -41854,8 +45196,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' virs-INTERACTS_WITH-bact: @@ -41878,6 +45222,8 @@ components: semantic: Bacterium predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' virs-INTERACTS_WITH-bact-rev: @@ -41900,6 +45246,8 @@ components: semantic: Virus predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd-AUGMENTS-celf-rev: @@ -41922,6 +45270,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -41946,8 +45296,10 @@ components: outputs: - id: UMLS semantic: PathologicalProcess - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dora-TREATS-patf-rev: @@ -41968,8 +45320,10 @@ components: outputs: - id: UMLS semantic: Activity - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PART_OF-aapp: @@ -41992,6 +45346,8 @@ components: semantic: Polypeptide predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PART_OF-aapp-rev: @@ -42014,6 +45370,8 @@ components: semantic: Polypeptide predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-STIMULATES-phsu: @@ -42036,6 +45394,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -42062,6 +45422,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -42088,6 +45450,8 @@ components: semantic: GrossAnatomicalStructure predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-INTERACTS_WITH-bact_umls: @@ -42110,6 +45474,8 @@ components: semantic: Bacterium predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-INTERACTS_WITH-bact_umls-rev: @@ -42132,6 +45498,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' cell-PRODUCES-horm: @@ -42154,6 +45522,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' horm-STIMULATES-bacs-rev: @@ -42176,6 +45546,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -42202,6 +45574,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -42228,6 +45602,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -42254,6 +45630,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -42280,6 +45658,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-ASSOCIATED_WITH-sosy: @@ -42302,6 +45682,8 @@ components: semantic: PhenotypicFeature predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-ASSOCIATED_WITH-sosy-rev: @@ -42324,6 +45706,8 @@ components: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-PREDISPOSES-dsyn_umls-rev: @@ -42344,8 +45728,10 @@ components: outputs: - id: NCBIGene semantic: Gene - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' aapp-INTERACTS_WITH-bodm: @@ -42368,6 +45754,8 @@ components: semantic: Device predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-INTERACTS_WITH-bodm-rev: @@ -42390,6 +45778,8 @@ components: semantic: Polypeptide predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-AFFECTS-neop_umls: @@ -42412,6 +45802,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-AFFECTS-neop_umls-rev: @@ -42434,6 +45826,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' lipd-AUGMENTS-bpoc-rev: @@ -42456,6 +45850,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -42482,6 +45878,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -42508,6 +45906,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -42534,6 +45934,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AFFECTS-dsyn: @@ -42556,8 +45958,58 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' + sbst-CAUSES-patf: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: ChemicalEntity + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:patf AND _exists_:object.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: PathologicalProcess + predicate: causes + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' + sbst-CAUSES-patf-rev: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PathologicalProcess + requestBody: + body: + q: '{{ queryInputs }}' + scopes: object.umls + parameters: + fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:sbst AND _exists_:subject.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: ChemicalEntity + predicate: caused_by + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-AFFECTS-cell-rev: - supportBatch: True useTemplating: True @@ -42578,6 +46030,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' patf-AFFECTS-phsf: @@ -42600,6 +46054,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs_umls-COEXISTS_WITH-aapp_ncbigene: @@ -42622,6 +46078,8 @@ components: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' orgf-AFFECTS-mobd: @@ -42644,6 +46102,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' comd-PRODUCES-bacs: @@ -42666,6 +46126,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' comd-PRODUCES-bacs-rev: @@ -42688,6 +46150,8 @@ components: semantic: Disease predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' neop-COEXISTS_WITH-celf: @@ -42710,6 +46174,8 @@ components: semantic: PhysiologicalProcess predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' neop-COEXISTS_WITH-celf-rev: @@ -42732,6 +46198,8 @@ components: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch_umls-COEXISTS_WITH-gngm_ncbigene-rev: @@ -42754,6 +46222,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-CAUSES-patf: @@ -42776,6 +46246,8 @@ components: semantic: PathologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-CAUSES-patf-rev: @@ -42798,6 +46270,8 @@ components: semantic: Gene predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-ASSOCIATED_WITH-mobd: @@ -42820,6 +46294,8 @@ components: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-ASSOCIATED_WITH-patf: @@ -42842,6 +46318,8 @@ components: semantic: PathologicalProcess predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-ASSOCIATED_WITH-patf-rev: @@ -42864,6 +46342,8 @@ components: semantic: BiologicalEntity predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-DISRUPTS-celf: @@ -42886,6 +46366,8 @@ components: semantic: PhysiologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-DISRUPTS-celf-rev: @@ -42908,6 +46390,8 @@ components: semantic: Disease predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-AUGMENTS-neop: @@ -42930,6 +46414,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -42956,6 +46442,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -42982,6 +46470,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-COEXISTS_WITH-aapp-rev: @@ -43004,6 +46494,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsf-ASSOCIATED_WITH-orch: @@ -43026,6 +46518,8 @@ components: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inch_umls-STIMULATES-gngm_ncbigene-rev: @@ -43048,6 +46542,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -43074,6 +46570,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-AFFECTS-dsyn-rev: @@ -43096,6 +46594,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-CAUSES-sosy-rev: @@ -43118,6 +46618,8 @@ components: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-STIMULATES-elii: @@ -43140,6 +46642,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -43166,6 +46670,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-INTERACTS_WITH-eico: @@ -43188,6 +46694,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AFFECTS-mobd: @@ -43210,6 +46718,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' elii-INHIBITS-gngm-rev: @@ -43232,6 +46742,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -43258,6 +46770,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -43284,6 +46798,8 @@ components: semantic: BiologicalEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-COEXISTS_WITH-imft-rev: @@ -43306,6 +46822,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu_umls-INTERACTS_WITH-aapp_ncbigene-rev: @@ -43328,6 +46846,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-AUGMENTS-moft-rev: @@ -43350,6 +46870,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -43376,6 +46898,8 @@ components: semantic: Fungus predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-PART_OF-fngs-rev: @@ -43398,6 +46922,8 @@ components: semantic: BiologicalEntity predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-PREVENTS-sosy-rev: @@ -43418,8 +46944,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-STIMULATES-aapp: @@ -43442,6 +46970,8 @@ components: semantic: Polypeptide predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -43468,12 +46998,62 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased + sbst-CAUSES-dsyn: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: ChemicalEntity + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:dsyn AND _exists_:object.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Disease + predicate: causes + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' + sbst-CAUSES-dsyn-rev: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: Disease + requestBody: + body: + q: '{{ queryInputs }}' + scopes: object.umls + parameters: + fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:sbst AND _exists_:subject.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: ChemicalEntity + predicate: caused_by + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-COEXISTS_WITH-carb: - supportBatch: True useTemplating: True @@ -43494,6 +47074,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nnon-AUGMENTS-bpoc-rev: @@ -43516,6 +47098,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -43542,6 +47126,8 @@ components: semantic: Polypeptide predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-COEXISTS_WITH-aapp-rev: @@ -43564,6 +47150,8 @@ components: semantic: Protein predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs_umls-STIMULATES-aapp_ncbigene: @@ -43586,6 +47174,8 @@ components: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: @@ -43612,6 +47202,8 @@ components: semantic: Gene predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' lipd-COEXISTS_WITH-aapp-rev: @@ -43634,6 +47226,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-AUGMENTS-acab: @@ -43656,6 +47250,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -43682,6 +47278,8 @@ components: semantic: Disease predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsf-AFFECTS-patf-rev: @@ -43704,6 +47302,8 @@ components: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inpo-CAUSES-anab: @@ -43723,9 +47323,11 @@ components: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-INTERACTS_WITH-aapp: @@ -43748,6 +47350,8 @@ components: semantic: Polypeptide predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-INTERACTS_WITH-aapp-rev: @@ -43770,6 +47374,8 @@ components: semantic: Protein predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-INTERACTS_WITH-phsu_umls: @@ -43792,6 +47398,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AFFECTS-phsf: @@ -43814,6 +47422,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nnon-DISRUPTS-celf-rev: @@ -43836,6 +47446,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-AFFECTS-bpoc-rev: @@ -43858,6 +47470,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-INTERACTS_WITH-rcpt: @@ -43880,6 +47494,8 @@ components: semantic: Protein predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-INTERACTS_WITH-rcpt-rev: @@ -43902,6 +47518,8 @@ components: semantic: Polypeptide predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell-LOCATION_OF-emod: @@ -43924,6 +47542,8 @@ components: semantic: BiologicalEntity predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-LOCATION_OF-emod-rev: @@ -43946,6 +47566,8 @@ components: semantic: Cell predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' acab-LOCATION_OF-bact: @@ -43968,6 +47590,8 @@ components: semantic: Bacterium predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' acab-LOCATION_OF-bact-rev: @@ -43990,6 +47614,8 @@ components: semantic: Disease predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-DISRUPTS-celf-rev: @@ -44012,6 +47638,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cgab-LOCATION_OF-neop-rev: @@ -44034,6 +47662,8 @@ components: semantic: Disease predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PREVENTS-neop: @@ -44054,8 +47684,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PREVENTS-neop-rev: @@ -44076,8 +47708,10 @@ components: outputs: - id: UMLS semantic: Polypeptide - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' medd-CAUSES-patf: @@ -44100,6 +47734,8 @@ components: semantic: PathologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' medd-CAUSES-patf-rev: @@ -44122,6 +47758,8 @@ components: semantic: Device predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell-PRODUCES-imft: @@ -44144,6 +47782,8 @@ components: semantic: BiologicalEntity predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-PRODUCES-imft-rev: @@ -44166,6 +47806,8 @@ components: semantic: Cell predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' opco-CAUSES-dsyn-rev: @@ -44188,8 +47830,34 @@ components: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' + anab-PART_OF-neop: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Disease + predicate: part_of + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' anab-PART_OF-neop-rev: - supportBatch: True useTemplating: True @@ -44207,9 +47875,11 @@ components: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-COEXISTS_WITH-bacs: @@ -44232,6 +47902,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-COEXISTS_WITH-bacs-rev: @@ -44254,6 +47926,8 @@ components: semantic: Protein predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-STIMULATES-lipd: @@ -44276,6 +47950,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -44302,6 +47978,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nsba-AFFECTS-cell-rev: @@ -44324,6 +48002,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' antb-AFFECTS-dsyn-rev: @@ -44346,6 +48026,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-PRODUCES-horm: @@ -44368,6 +48050,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-STIMULATES-imft: @@ -44390,6 +48074,8 @@ components: semantic: BiologicalEntity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -44416,6 +48102,8 @@ components: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -44442,6 +48130,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nnon_umls-INTERACTS_WITH-aapp_ncbigene-rev: @@ -44464,6 +48154,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' elii-AUGMENTS-cell-rev: @@ -44486,6 +48178,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -44512,6 +48206,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -44538,6 +48234,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-INHIBITS-horm: @@ -44560,6 +48258,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -44584,8 +48284,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsf-AFFECTS-orga-rev: @@ -44608,6 +48310,8 @@ components: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-PREDISPOSES-patf-rev: @@ -44628,8 +48332,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-DISRUPTS-cell-rev: @@ -44652,6 +48358,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-INHIBITS-inch: @@ -44674,6 +48382,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -44700,6 +48410,8 @@ components: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-AFFECTS-orgf-rev: @@ -44722,6 +48434,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-PREDISPOSES-neop_umls: @@ -44742,8 +48456,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-CAUSES-comd: @@ -44766,6 +48482,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsf-AFFECTS-bpoc: @@ -44788,6 +48506,8 @@ components: semantic: GrossAnatomicalStructure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsf-AFFECTS-bpoc-rev: @@ -44810,6 +48530,8 @@ components: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-PREDISPOSES-comd: @@ -44830,8 +48552,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell_umls-PRODUCES-gngm_ncbigene: @@ -44854,6 +48578,8 @@ components: semantic: Gene predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' aapp-INTERACTS_WITH-strd: @@ -44876,6 +48602,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-STIMULATES-cell: @@ -44898,6 +48626,8 @@ components: semantic: Cell predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -44924,6 +48654,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -44950,6 +48682,8 @@ components: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-INHIBITS-aapp_umls-rev: @@ -44972,6 +48706,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -44998,6 +48734,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -45024,6 +48762,8 @@ components: semantic: PhysiologicalProcess predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-STIMULATES-aapp_ncbigene: @@ -45046,6 +48786,8 @@ components: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: @@ -45070,8 +48812,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-AFFECTS-mobd: @@ -45094,6 +48838,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-COEXISTS_WITH-imft: @@ -45116,6 +48862,8 @@ components: semantic: BiologicalEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-COEXISTS_WITH-imft-rev: @@ -45138,6 +48886,8 @@ components: semantic: BiologicalEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-DISRUPTS-acab: @@ -45160,6 +48910,8 @@ components: semantic: Disease predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-DISRUPTS-patf-rev: @@ -45182,6 +48934,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' medd-PREVENTS-inpo: @@ -45202,8 +48956,10 @@ components: outputs: - id: UMLS semantic: PathologicalProcess - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-PART_OF-fngs: @@ -45226,6 +48982,8 @@ components: semantic: Fungus predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-PART_OF-fngs-rev: @@ -45248,6 +49006,8 @@ components: semantic: GrossAnatomicalStructure predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PRODUCES-bacs: @@ -45270,6 +49030,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-CAUSES-cgab: @@ -45292,6 +49054,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' neop-PART_OF-virs: @@ -45314,6 +49078,8 @@ components: semantic: Virus predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' neop-PART_OF-virs-rev: @@ -45336,6 +49102,8 @@ components: semantic: Disease predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' acab-COEXISTS_WITH-patf-rev: @@ -45358,6 +49126,8 @@ components: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc_umls-PRODUCES-aapp_ncbigene: @@ -45380,6 +49150,8 @@ components: semantic: Gene predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' bpoc_umls-PRODUCES-aapp_ncbigene-rev: @@ -45402,6 +49174,8 @@ components: semantic: GrossAnatomicalStructure predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-INHIBITS-bacs-rev: @@ -45424,6 +49198,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -45450,6 +49226,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -45476,6 +49254,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -45502,6 +49282,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' biof-AFFECTS-orgf-rev: @@ -45524,6 +49306,8 @@ components: semantic: Phenomenon predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inbe-PREDISPOSES-mobd: @@ -45544,8 +49328,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cgab-PART_OF-aggp: @@ -45568,6 +49354,8 @@ components: semantic: Cohort predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cgab-PART_OF-aggp-rev: @@ -45590,6 +49378,8 @@ components: semantic: Disease predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' diap-DIAGNOSES-comd: @@ -45612,6 +49402,8 @@ components: semantic: Disease predicate: diagnoses source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' lipd-ASSOCIATED_WITH-patf-rev: @@ -45634,6 +49426,8 @@ components: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-AUGMENTS-cell-rev: @@ -45656,6 +49450,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -45682,6 +49478,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -45708,6 +49506,8 @@ components: semantic: NucleicAcidEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-COEXISTS_WITH-nusq-rev: @@ -45730,6 +49530,8 @@ components: semantic: Polypeptide predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-INHIBITS-phsu: @@ -45752,6 +49554,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -45778,6 +49582,8 @@ components: semantic: Polypeptide predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-ASSOCIATED_WITH-aapp-rev: @@ -45800,6 +49606,8 @@ components: semantic: PathologicalProcess predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-DISRUPTS-moft-rev: @@ -45822,6 +49630,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-AFFECTS-biof-rev: @@ -45844,6 +49654,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' acab-AFFECTS-celf-rev: @@ -45866,6 +49678,8 @@ components: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-COEXISTS_WITH-aapp-rev: @@ -45888,6 +49702,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' ortf-CAUSES-orgf: @@ -45910,6 +49726,8 @@ components: semantic: PhysiologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' ortf-CAUSES-orgf-rev: @@ -45932,6 +49750,8 @@ components: semantic: PhysiologicalProcess predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' elii-AUGMENTS-bpoc-rev: @@ -45954,6 +49774,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -45980,6 +49802,8 @@ components: semantic: CellularComponent predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-DISRUPTS-celc-rev: @@ -46002,6 +49826,8 @@ components: semantic: Polypeptide predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' irda-CAUSES-neop: @@ -46024,6 +49850,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' food-AFFECTS-neop: @@ -46046,6 +49874,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-CAUSES-acab: @@ -46068,6 +49898,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AFFECTS-bpoc: @@ -46090,6 +49922,8 @@ components: semantic: GrossAnatomicalStructure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AFFECTS-bpoc-rev: @@ -46112,6 +49946,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-INHIBITS-hops: @@ -46134,6 +49970,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -46160,6 +49998,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-COEXISTS_WITH-gngm-rev: @@ -46182,6 +50022,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-INHIBITS-eico: @@ -46204,6 +50046,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -46228,8 +50072,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-AUGMENTS-orgf: @@ -46252,6 +50098,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -46278,6 +50126,8 @@ components: semantic: GrossAnatomicalStructure predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-PART_OF-tisu: @@ -46300,6 +50150,8 @@ components: semantic: GrossAnatomicalStructure predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' strd-INTERACTS_WITH-aapp-rev: @@ -46322,6 +50174,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-PREDISPOSES-neop-rev: @@ -46342,8 +50196,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' comd-AFFECTS-comd: @@ -46366,6 +50222,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bdsu-LOCATION_OF-nsba: @@ -46388,6 +50246,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bdsu-LOCATION_OF-horm: @@ -46410,6 +50270,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' eico-AUGMENTS-orgf-rev: @@ -46432,6 +50294,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -46454,10 +50318,36 @@ components: filter: predicate:TREATS AND object.semantic_type_abbreviation:anab AND _exists_:object.umls AND pmid_count:>3 outputs: + - id: UMLS + semantic: PhenotypicFeature + predicate: treats_or_applied_or_studied_to_treat + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' + anab-COEXISTS_WITH-cgab: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:cgab AND + _exists_:object.umls AND pmid_count:>3 + outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' lipd-DISRUPTS-orgf-rev: @@ -46480,6 +50370,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-AFFECTS-celc: @@ -46502,6 +50394,8 @@ components: semantic: CellularComponent predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AFFECTS-celc-rev: @@ -46524,6 +50418,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-AFFECTS-bpoc_umls-rev: @@ -46546,6 +50442,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' bodm-INTERACTS_WITH-bacs: @@ -46568,6 +50466,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bodm-INTERACTS_WITH-bacs-rev: @@ -46590,6 +50490,8 @@ components: semantic: Device predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' medd-PREVENTS-sosy: @@ -46610,8 +50512,10 @@ components: outputs: - id: UMLS semantic: PhenotypicFeature - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' medd-PREVENTS-sosy-rev: @@ -46632,8 +50536,10 @@ components: outputs: - id: UMLS semantic: Device - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nsba-ASSOCIATED_WITH-patf-rev: @@ -46656,6 +50562,8 @@ components: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-INHIBITS-inch: @@ -46678,6 +50586,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -46704,6 +50614,8 @@ components: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-PRODUCES-bdsu: @@ -46726,6 +50638,8 @@ components: semantic: AnatomicalEntity predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PRODUCES-bdsu-rev: @@ -46748,6 +50662,8 @@ components: semantic: Gene predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-INHIBITS-bacs_umls-rev: @@ -46770,6 +50686,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -46796,6 +50714,8 @@ components: semantic: NucleicAcidEntity predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-PART_OF-nusq-rev: @@ -46818,6 +50738,8 @@ components: semantic: NucleicAcidEntity predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-CAUSES-neop_umls: @@ -46840,6 +50762,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' lipd-CAUSES-sosy-rev: @@ -46862,6 +50786,8 @@ components: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bdsu-CAUSES-patf: @@ -46884,6 +50810,8 @@ components: semantic: PathologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bdsu-CAUSES-patf-rev: @@ -46906,6 +50834,8 @@ components: semantic: AnatomicalEntity predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-LOCATION_OF-dsyn: @@ -46928,6 +50858,8 @@ components: semantic: Disease predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-LOCATION_OF-dsyn-rev: @@ -46950,6 +50882,8 @@ components: semantic: NucleicAcidEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nnon-TREATS-neop-rev: @@ -46970,8 +50904,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bdsu-LOCATION_OF-elii: @@ -46994,6 +50930,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bodm-INTERACTS_WITH-aapp: @@ -47016,6 +50954,8 @@ components: semantic: Polypeptide predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bodm-INTERACTS_WITH-aapp-rev: @@ -47038,6 +50978,8 @@ components: semantic: Device predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-AUGMENTS-ortf-rev: @@ -47060,6 +51002,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -47086,6 +51030,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-DISRUPTS-sosy: @@ -47108,6 +51054,8 @@ components: semantic: PhenotypicFeature predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-DISRUPTS-sosy-rev: @@ -47130,6 +51078,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-AUGMENTS-bpoc_umls-rev: @@ -47152,6 +51102,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -47178,6 +51130,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-AUGMENTS-patf: @@ -47200,6 +51154,8 @@ components: semantic: PathologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -47226,6 +51182,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -47252,6 +51210,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bodm-CAUSES-patf-rev: @@ -47274,6 +51234,8 @@ components: semantic: Device predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-PART_OF-bact: @@ -47296,6 +51258,8 @@ components: semantic: Bacterium predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-PART_OF-bact-rev: @@ -47318,6 +51282,8 @@ components: semantic: NucleicAcidEntity predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' food-AFFECTS-ortf: @@ -47340,6 +51306,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' horm-PREVENTS-patf-rev: @@ -47360,8 +51328,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-AFFECTS-celc_umls-rev: @@ -47384,6 +51354,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' bacs-PART_OF-gngm: @@ -47406,6 +51378,8 @@ components: semantic: Gene predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-PART_OF-gngm-rev: @@ -47428,6 +51402,8 @@ components: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' tisu-LOCATION_OF-fngs-rev: @@ -47450,6 +51426,8 @@ components: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-AUGMENTS-bpoc-rev: @@ -47472,6 +51450,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -47498,6 +51478,8 @@ components: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' irda-INTERACTS_WITH-orch: @@ -47520,6 +51502,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PRODUCES-eico: @@ -47542,6 +51526,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-AFFECTS-biof_umls: @@ -47564,6 +51550,8 @@ components: semantic: Phenomenon predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-AFFECTS-biof_umls-rev: @@ -47586,6 +51574,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' acab-PART_OF-fngs: @@ -47608,6 +51598,8 @@ components: semantic: Fungus predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' acab-PART_OF-fngs-rev: @@ -47630,6 +51622,8 @@ components: semantic: Disease predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-PREVENTS-mobd: @@ -47650,8 +51644,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-TREATS-comd: @@ -47672,8 +51668,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' elii-INHIBITS-bacs-rev: @@ -47696,6 +51694,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -47722,6 +51722,8 @@ components: semantic: Cohort predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-PART_OF-aggp-rev: @@ -47744,6 +51746,8 @@ components: semantic: GrossAnatomicalStructure predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bact-CAUSES-neop: @@ -47766,6 +51770,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-INTERACTS_WITH-phsu: @@ -47788,6 +51794,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-PRODUCES-nnon: @@ -47810,6 +51818,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' carb-STIMULATES-bacs-rev: @@ -47832,6 +51842,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -47858,6 +51870,8 @@ components: semantic: GrossAnatomicalStructure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -47884,6 +51898,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -47910,6 +51926,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -47936,6 +51954,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-AUGMENTS-fndg-rev: @@ -47958,6 +51978,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -47984,6 +52006,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -48008,8 +52032,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell-PRODUCES-orch: @@ -48032,6 +52058,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' tisu-PART_OF-virs: @@ -48054,6 +52082,8 @@ components: semantic: Virus predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' tisu-PART_OF-virs-rev: @@ -48076,6 +52106,8 @@ components: semantic: GrossAnatomicalStructure predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-AUGMENTS-bpoc-rev: @@ -48098,12 +52130,38 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased + neop-COEXISTS_WITH-anab-rev: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: object.umls + parameters: + fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:neop + AND _exists_:subject.umls AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Disease + predicate: coexists_with + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' elii-DISRUPTS-orgf-rev: - supportBatch: True useTemplating: True @@ -48124,6 +52182,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-AUGMENTS-neop: @@ -48146,6 +52206,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -48172,6 +52234,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -48198,6 +52262,8 @@ components: semantic: Phenomenon predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-CAUSES-biof-rev: @@ -48220,6 +52286,8 @@ components: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dora-PREVENTS-sosy: @@ -48240,8 +52308,10 @@ components: outputs: - id: UMLS semantic: PhenotypicFeature - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dora-PREVENTS-sosy-rev: @@ -48262,8 +52332,10 @@ components: outputs: - id: UMLS semantic: Activity - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-PREVENTS-virs: @@ -48284,8 +52356,10 @@ components: outputs: - id: UMLS semantic: Virus - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-PREVENTS-virs-rev: @@ -48306,8 +52380,10 @@ components: outputs: - id: UMLS semantic: BiologicalEntity - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-PRECEDES-phsf: @@ -48330,6 +52406,8 @@ components: semantic: PhysiologicalProcess predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-PRECEDES-phsf-rev: @@ -48352,6 +52430,8 @@ components: semantic: Disease predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsf-PROCESS_OF-aggp-rev: @@ -48374,6 +52454,8 @@ components: semantic: PhysiologicalProcess predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-AUGMENTS-comd: @@ -48396,6 +52478,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -48422,6 +52506,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -48446,8 +52532,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-INHIBITS-bacs-rev: @@ -48470,6 +52558,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -48496,6 +52586,8 @@ components: semantic: Phenomenon predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' blor-LOCATION_OF-biof-rev: @@ -48518,6 +52610,8 @@ components: semantic: AnatomicalEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-AFFECTS-sosy-rev: @@ -48540,6 +52634,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' antb_umls-STIMULATES-gngm_ncbigene-rev: @@ -48562,6 +52658,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -48588,6 +52686,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' neop-MANIFESTATION_OF-neop: @@ -48610,6 +52710,8 @@ components: semantic: Disease predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' neop-MANIFESTATION_OF-neop-rev: @@ -48632,6 +52734,8 @@ components: semantic: Disease predicate: has_manifestation source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-COEXISTS_WITH-inch_umls: @@ -48654,6 +52758,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' sosy-PREDISPOSES-mobd: @@ -48674,8 +52780,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' horm_umls-INHIBITS-gngm_ncbigene-rev: @@ -48698,6 +52806,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -48724,6 +52834,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-INTERACTS_WITH-bacs-rev: @@ -48746,6 +52858,8 @@ components: semantic: BiologicalEntity predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inpo-DISRUPTS-celf: @@ -48768,6 +52882,8 @@ components: semantic: PhysiologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inpo-DISRUPTS-celf-rev: @@ -48790,6 +52906,8 @@ components: semantic: PathologicalProcess predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell-PRODUCES-eico: @@ -48812,6 +52930,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-TREATS-cgab: @@ -48832,8 +52952,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' mobd-CAUSES-dsyn-rev: @@ -48856,6 +52978,8 @@ components: semantic: Disease predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-CAUSES-cgab: @@ -48878,6 +53002,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-MANIFESTATION_OF-patf: @@ -48900,6 +53026,8 @@ components: semantic: PathologicalProcess predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-MANIFESTATION_OF-patf-rev: @@ -48922,6 +53050,8 @@ components: semantic: PathologicalProcess predicate: has_manifestation source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-COEXISTS_WITH-nusq: @@ -48944,6 +53074,8 @@ components: semantic: NucleicAcidEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-COEXISTS_WITH-nusq-rev: @@ -48966,6 +53098,8 @@ components: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-DISRUPTS-comd: @@ -48988,6 +53122,8 @@ components: semantic: Disease predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AUGMENTS-bpoc: @@ -49010,6 +53146,8 @@ components: semantic: GrossAnatomicalStructure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -49036,6 +53174,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' food-AFFECTS-patf: @@ -49058,6 +53198,8 @@ components: semantic: PathologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' food-AFFECTS-patf-rev: @@ -49080,6 +53222,8 @@ components: semantic: Food predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-PART_OF-virs-rev: @@ -49102,6 +53246,8 @@ components: semantic: GrossAnatomicalStructure predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' diap-CAUSES-sosy: @@ -49124,6 +53270,8 @@ components: semantic: PhenotypicFeature predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' diap-CAUSES-sosy-rev: @@ -49146,6 +53294,8 @@ components: semantic: Procedure predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-PREDISPOSES-inpo: @@ -49166,8 +53316,10 @@ components: outputs: - id: UMLS semantic: PathologicalProcess - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' strd-CAUSES-dsyn-rev: @@ -49190,6 +53342,8 @@ components: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bdsu-LOCATION_OF-antb: @@ -49212,6 +53366,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AUGMENTS-ortf: @@ -49234,6 +53390,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -49260,6 +53418,8 @@ components: semantic: BiologicalEntity predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-PRODUCES-imft-rev: @@ -49282,6 +53442,8 @@ components: semantic: PathologicalProcess predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-INTERACTS_WITH-nsba_umls: @@ -49304,6 +53466,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' neop-PRODUCES-bacs-rev: @@ -49326,6 +53490,8 @@ components: semantic: Disease predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PREDISPOSES-mobd: @@ -49346,8 +53512,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' eico-INTERACTS_WITH-aapp-rev: @@ -49370,6 +53538,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' eico_umls-STIMULATES-gngm_ncbigene-rev: @@ -49392,6 +53562,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -49418,6 +53590,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bact-LOCATION_OF-inch: @@ -49440,6 +53614,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nsba-COEXISTS_WITH-aapp-rev: @@ -49462,6 +53638,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' ortf-PRECEDES-orgf-rev: @@ -49484,6 +53662,8 @@ components: semantic: PhysiologicalProcess predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' irda-CAUSES-comd: @@ -49506,6 +53686,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-TREATS-dsyn-rev: @@ -49526,8 +53708,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-ASSOCIATED_WITH-patf-rev: @@ -49550,6 +53734,8 @@ components: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-ASSOCIATED_WITH-inpo: @@ -49572,6 +53758,8 @@ components: semantic: PathologicalProcess predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-PREVENTS-virs: @@ -49592,8 +53780,10 @@ components: outputs: - id: UMLS semantic: Virus - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-PREVENTS-virs-rev: @@ -49614,8 +53804,10 @@ components: outputs: - id: UMLS semantic: Procedure - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-INTERACTS_WITH-irda-rev: @@ -49638,6 +53830,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-INHIBITS-lipd: @@ -49660,6 +53854,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -49686,6 +53882,8 @@ components: semantic: Disease predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-INTERACTS_WITH-imft: @@ -49708,6 +53906,8 @@ components: semantic: BiologicalEntity predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-INTERACTS_WITH-imft-rev: @@ -49730,6 +53930,8 @@ components: semantic: BiologicalEntity predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' emst-LOCATION_OF-virs-rev: @@ -49752,6 +53954,8 @@ components: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bact-LOCATION_OF-elii: @@ -49774,6 +53978,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_umls-COEXISTS_WITH-aapp_ncbigene: @@ -49796,6 +54002,8 @@ components: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' imft_umls-STIMULATES-gngm_ncbigene: @@ -49818,6 +54026,8 @@ components: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: @@ -49844,6 +54054,8 @@ components: semantic: BiologicalEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -49870,6 +54082,8 @@ components: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-PRODUCES-aapp_umls-rev: @@ -49892,6 +54106,8 @@ components: semantic: Gene predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' bodm-CAUSES-dsyn-rev: @@ -49914,6 +54130,8 @@ components: semantic: Device predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-LOCATION_OF-neop: @@ -49936,6 +54154,8 @@ components: semantic: Disease predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' virs-LOCATION_OF-imft: @@ -49958,6 +54178,8 @@ components: semantic: BiologicalEntity predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' virs-LOCATION_OF-imft-rev: @@ -49980,6 +54202,8 @@ components: semantic: Virus predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch_umls-INHIBITS-aapp_ncbigene: @@ -50002,6 +54226,8 @@ components: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: @@ -50028,6 +54254,8 @@ components: semantic: Device predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bodm-INTERACTS_WITH-bodm-rev: @@ -50050,6 +54278,8 @@ components: semantic: Device predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-INHIBITS-elii: @@ -50072,6 +54302,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -50098,6 +54330,8 @@ components: semantic: Cell predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-AFFECTS-cell-rev: @@ -50120,6 +54354,8 @@ components: semantic: BiologicalEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-ASSOCIATED_WITH-inpo_umls: @@ -50142,6 +54378,8 @@ components: semantic: PathologicalProcess predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' eico-STIMULATES-bacs-rev: @@ -50164,6 +54402,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -50190,6 +54430,8 @@ components: semantic: PhysiologicalProcess predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-AFFECTS-tisu_umls: @@ -50212,6 +54454,8 @@ components: semantic: GrossAnatomicalStructure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-PRECEDES-comd: @@ -50234,6 +54478,8 @@ components: semantic: Disease predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' medd-CAUSES-inpo: @@ -50256,6 +54502,8 @@ components: semantic: PathologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' medd_umls-USES-phsu_ncbigene: @@ -50278,6 +54526,8 @@ components: semantic: Gene predicate: has_input source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' medd_umls-USES-phsu_ncbigene-rev: @@ -50300,6 +54550,8 @@ components: semantic: Device predicate: is_input_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_umls-COEXISTS_WITH-aapp_ncbigene: @@ -50322,6 +54574,8 @@ components: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' nusq-ASSOCIATED_WITH-patf: @@ -50344,6 +54598,8 @@ components: semantic: PathologicalProcess predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-ASSOCIATED_WITH-patf-rev: @@ -50366,6 +54622,8 @@ components: semantic: NucleicAcidEntity predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-INTERACTS_WITH-eico: @@ -50388,6 +54646,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' hops_umls-INHIBITS-gngm_ncbigene-rev: @@ -50410,6 +54670,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -50436,6 +54698,8 @@ components: semantic: GrossAnatomicalStructure predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-AFFECTS-sosy-rev: @@ -50458,6 +54722,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-INHIBITS-hops: @@ -50480,6 +54746,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -50506,6 +54774,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-MANIFESTATION_OF-patf: @@ -50528,6 +54798,8 @@ components: semantic: PathologicalProcess predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-MANIFESTATION_OF-patf-rev: @@ -50550,6 +54822,8 @@ components: semantic: Disease predicate: has_manifestation source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cgab-OCCURS_IN-aggp-rev: @@ -50572,6 +54846,8 @@ components: semantic: Disease predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' patf-COEXISTS_WITH-comd: @@ -50594,6 +54870,8 @@ components: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' irda-INTERACTS_WITH-elii: @@ -50616,6 +54894,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-AFFECTS-comd: @@ -50638,6 +54918,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-ASSOCIATED_WITH-comd_umls: @@ -50660,6 +54942,8 @@ components: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' lipd-ADMINISTERED_TO-cell-rev: @@ -50682,6 +54966,8 @@ components: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-PREDISPOSES-patf_umls: @@ -50702,8 +54988,10 @@ components: outputs: - id: UMLS semantic: PathologicalProcess - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-PREDISPOSES-patf_umls-rev: @@ -50724,8 +55012,10 @@ components: outputs: - id: NCBIGene semantic: Gene - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' hops-AFFECTS-dsyn-rev: @@ -50748,6 +55038,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nsba-AUGMENTS-moft-rev: @@ -50770,6 +55062,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -50793,9 +55087,11 @@ components: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' eico-INHIBITS-gngm-rev: @@ -50818,6 +55114,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -50844,6 +55142,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -50870,6 +55170,8 @@ components: semantic: PhysiologicalProcess predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' carb-DISRUPTS-orgf-rev: @@ -50892,6 +55194,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-PREVENTS-comd: @@ -50912,8 +55216,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' lbtr-PREDISPOSES-dsyn: @@ -50934,8 +55240,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' lbtr-PREDISPOSES-dsyn-rev: @@ -50956,8 +55264,10 @@ components: outputs: - id: UMLS semantic: Phenomenon - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' elii-ASSOCIATED_WITH-patf-rev: @@ -50980,6 +55290,8 @@ components: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-DISRUPTS-neop-rev: @@ -51002,6 +55314,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' eico-ASSOCIATED_WITH-dsyn-rev: @@ -51024,6 +55338,8 @@ components: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-INHIBITS-aapp: @@ -51046,6 +55362,8 @@ components: semantic: Polypeptide predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -51072,6 +55390,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -51098,6 +55418,8 @@ components: semantic: Polypeptide predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' moft-AFFECTS-aapp-rev: @@ -51120,6 +55442,8 @@ components: semantic: MolecularActivity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nsba-CAUSES-sosy-rev: @@ -51142,6 +55466,8 @@ components: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-COEXISTS_WITH-orch_umls: @@ -51164,6 +55490,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inpo-DISRUPTS-orgf: @@ -51186,6 +55514,8 @@ components: semantic: PhysiologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bact_umls-PRODUCES-aapp_ncbigene: @@ -51208,6 +55538,8 @@ components: semantic: Gene predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' bact_umls-PRODUCES-aapp_ncbigene-rev: @@ -51230,6 +55562,8 @@ components: semantic: Bacterium predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PART_OF-blor: @@ -51252,6 +55586,8 @@ components: semantic: AnatomicalEntity predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PART_OF-blor-rev: @@ -51274,6 +55610,8 @@ components: semantic: Polypeptide predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-DISRUPTS-neop_umls: @@ -51296,6 +55634,8 @@ components: semantic: Disease predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-DISRUPTS-neop_umls-rev: @@ -51318,6 +55658,8 @@ components: semantic: Gene predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' aapp_ncbigene-AUGMENTS-celc_umls: @@ -51340,6 +55682,8 @@ components: semantic: CellularComponent predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -51366,6 +55710,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -51392,6 +55738,8 @@ components: semantic: BiologicalEntity predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-INTERACTS_WITH-imft-rev: @@ -51414,6 +55762,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-AUGMENTS-comd-rev: @@ -51436,6 +55786,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -51462,6 +55814,8 @@ components: semantic: Fungus predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-LOCATION_OF-fngs-rev: @@ -51484,6 +55838,56 @@ components: semantic: Cell predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' + anab-COEXISTS_WITH-anab: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:anab AND + _exists_:object.umls AND pmid_count:>3 + outputs: + - id: UMLS + semantic: PhenotypicFeature + predicate: coexists_with + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' + anab-COEXISTS_WITH-anab-rev: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: object.umls + parameters: + fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:anab + AND _exists_:subject.umls AND pmid_count:>3 + outputs: + - id: UMLS + semantic: PhenotypicFeature + predicate: coexists_with + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-AUGMENTS-celc_umls-rev: @@ -51506,6 +55910,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -51532,6 +55938,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -51558,6 +55966,8 @@ components: semantic: GrossAnatomicalStructure predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bact-LOCATION_OF-imft: @@ -51580,6 +55990,8 @@ components: semantic: BiologicalEntity predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bact-LOCATION_OF-imft-rev: @@ -51602,6 +56014,8 @@ components: semantic: Bacterium predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nnon-AFFECTS-biof-rev: @@ -51624,6 +56038,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-AFFECTS-biof: @@ -51646,6 +56062,8 @@ components: semantic: Phenomenon predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-AFFECTS-biof-rev: @@ -51668,6 +56086,8 @@ components: semantic: Procedure predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' biof-AFFECTS-dsyn: @@ -51690,6 +56110,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' biof-AFFECTS-dsyn-rev: @@ -51712,6 +56134,8 @@ components: semantic: Phenomenon predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-PART_OF-anst: @@ -51734,6 +56158,8 @@ components: semantic: AnatomicalEntity predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-PART_OF-anst-rev: @@ -51756,6 +56182,8 @@ components: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-AUGMENTS-dsyn: @@ -51778,6 +56206,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -51804,6 +56234,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -51830,6 +56262,8 @@ components: semantic: Plant predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' neop-PART_OF-plnt-rev: @@ -51852,6 +56286,8 @@ components: semantic: Disease predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' diap-DIAGNOSES-virs: @@ -51874,6 +56310,8 @@ components: semantic: Virus predicate: diagnoses source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' diap-DIAGNOSES-virs-rev: @@ -51896,6 +56334,8 @@ components: semantic: Procedure predicate: is_diagnosed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-INTERACTS_WITH-lipd_umls: @@ -51918,6 +56358,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' hops-PREVENTS-dsyn-rev: @@ -51938,8 +56380,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' irda-CAUSES-inpo: @@ -51962,6 +56406,8 @@ components: semantic: PathologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-STIMULATES-moft: @@ -51984,6 +56430,8 @@ components: semantic: MolecularActivity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -52010,6 +56458,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -52034,8 +56484,10 @@ components: outputs: - id: UMLS semantic: PathologicalProcess - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PREDISPOSES-patf-rev: @@ -52056,8 +56508,10 @@ components: outputs: - id: UMLS semantic: Gene - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' patf-MANIFESTATION_OF-dsyn: @@ -52080,6 +56534,8 @@ components: semantic: Disease predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-MANIFESTATION_OF-dsyn-rev: @@ -52102,6 +56558,8 @@ components: semantic: PathologicalProcess predicate: has_manifestation source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' fngs-LOCATION_OF-elii: @@ -52124,6 +56582,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-AFFECTS-biof: @@ -52146,6 +56606,8 @@ components: semantic: Phenomenon predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-AFFECTS-biof-rev: @@ -52168,6 +56630,8 @@ components: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-COEXISTS_WITH-nsba: @@ -52190,6 +56654,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PART_OF-anab: @@ -52209,9 +56675,11 @@ components: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PART_OF-anab-rev: @@ -52219,7 +56687,7 @@ components: useTemplating: True inputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature requestBody: body: q: '{{ queryInputs }}' @@ -52234,6 +56702,8 @@ components: semantic: Polypeptide predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-INTERACTS_WITH-bodm: @@ -52256,6 +56726,8 @@ components: semantic: Device predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-INTERACTS_WITH-bodm-rev: @@ -52278,6 +56750,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bact-CAUSES-orgf: @@ -52300,6 +56774,8 @@ components: semantic: PhysiologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bact-CAUSES-orgf-rev: @@ -52322,6 +56798,8 @@ components: semantic: Bacterium predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' patf-AFFECTS-comd: @@ -52344,6 +56822,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nnon-CAUSES-inpo-rev: @@ -52366,6 +56846,8 @@ components: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-PREDISPOSES-dsyn-rev: @@ -52386,8 +56868,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' eico-COEXISTS_WITH-bacs-rev: @@ -52410,6 +56894,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-AFFECTS-cell-rev: @@ -52432,6 +56918,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-ASSOCIATED_WITH-inpo-rev: @@ -52454,6 +56942,8 @@ components: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-AUGMENTS-phsf_umls: @@ -52476,6 +56966,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -52502,6 +56994,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-PRODUCES-bdsu: @@ -52524,6 +57018,8 @@ components: semantic: AnatomicalEntity predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-PRODUCES-bdsu-rev: @@ -52546,6 +57042,8 @@ components: semantic: GrossAnatomicalStructure predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq_umls-COEXISTS_WITH-aapp_ncbigene: @@ -52568,6 +57066,8 @@ components: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' aapp-COEXISTS_WITH-antb: @@ -52590,6 +57090,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' elii-AUGMENTS-fndg-rev: @@ -52612,6 +57114,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -52638,6 +57142,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-DISRUPTS-cell_umls: @@ -52660,6 +57166,8 @@ components: semantic: Cell predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-DISRUPTS-cell_umls-rev: @@ -52682,6 +57190,8 @@ components: semantic: Gene predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' lipd-AFFECTS-cell-rev: @@ -52704,8 +57214,34 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' + sbst-CAUSES-inpo: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: ChemicalEntity + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:inpo AND _exists_:object.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: PathologicalProcess + predicate: causes + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' nsba-COEXISTS_WITH-orch-rev: - supportBatch: True useTemplating: True @@ -52726,6 +57262,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-CAUSES-inpo: @@ -52748,6 +57286,8 @@ components: semantic: PathologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-INHIBITS-carb: @@ -52770,6 +57310,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -52796,6 +57338,8 @@ components: semantic: Gene predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' orch-PREVENTS-cgab: @@ -52816,8 +57360,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-DISRUPTS-cell_umls-rev: @@ -52840,6 +57386,8 @@ components: semantic: Gene predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' strd-ASSOCIATED_WITH-patf-rev: @@ -52862,6 +57410,8 @@ components: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celf-PRECEDES-celf-rev: @@ -52884,6 +57434,8 @@ components: semantic: PhysiologicalProcess predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' virs-PROCESS_OF-aggp: @@ -52906,6 +57458,8 @@ components: semantic: Cohort predicate: occurs_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' virs-PROCESS_OF-aggp-rev: @@ -52928,6 +57482,8 @@ components: semantic: Virus predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-ASSOCIATED_WITH-patf-rev: @@ -52950,6 +57506,8 @@ components: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch_umls-INHIBITS-gngm_ncbigene-rev: @@ -52972,6 +57530,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -52998,6 +57558,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -53024,6 +57586,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs_umls-PART_OF-gngm_ncbigene: @@ -53046,6 +57610,8 @@ components: semantic: Gene predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' emst-LOCATION_OF-gngm-rev: @@ -53068,6 +57634,8 @@ components: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-INHIBITS-antb: @@ -53090,6 +57658,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -53116,6 +57686,8 @@ components: semantic: NucleicAcidEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-COEXISTS_WITH-nusq-rev: @@ -53138,6 +57710,8 @@ components: semantic: NucleicAcidEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' elii-AFFECTS-bpoc-rev: @@ -53160,6 +57734,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-STIMULATES-hops: @@ -53182,6 +57758,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -53208,6 +57786,8 @@ components: semantic: Virus predicate: diagnoses source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' medd-DIAGNOSES-virs-rev: @@ -53230,6 +57810,8 @@ components: semantic: Device predicate: is_diagnosed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-INTERACTS_WITH-aapp: @@ -53252,6 +57834,8 @@ components: semantic: Polypeptide predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-INTERACTS_WITH-aapp-rev: @@ -53274,6 +57858,8 @@ components: semantic: NucleicAcidEntity predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd-INTERACTS_WITH-bacs-rev: @@ -53296,6 +57882,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-AFFECTS-cell_umls: @@ -53318,6 +57906,8 @@ components: semantic: Cell predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-AFFECTS-cell_umls-rev: @@ -53340,6 +57930,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' cgab-PART_OF-neop-rev: @@ -53362,6 +57954,8 @@ components: semantic: Disease predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-AFFECTS-patf-rev: @@ -53384,6 +57978,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-COEXISTS_WITH-bacs: @@ -53406,6 +58002,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-COEXISTS_WITH-bacs-rev: @@ -53428,6 +58026,8 @@ components: semantic: BiologicalEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nnon-AFFECTS-patf-rev: @@ -53450,6 +58050,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' antb-STIMULATES-bacs-rev: @@ -53472,6 +58074,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -53498,6 +58102,8 @@ components: semantic: Gene predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' aapp_umls-PRODUCES-aapp_ncbigene-rev: @@ -53520,6 +58126,8 @@ components: semantic: Polypeptide predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-COEXISTS_WITH-phsu_umls: @@ -53542,6 +58150,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-INTERACTS_WITH-bodm-rev: @@ -53564,6 +58174,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd-PART_OF-celc-rev: @@ -53586,6 +58198,8 @@ components: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-ASSOCIATED_WITH-sosy: @@ -53608,6 +58222,8 @@ components: semantic: PhenotypicFeature predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-ASSOCIATED_WITH-sosy-rev: @@ -53630,6 +58246,8 @@ components: semantic: Gene predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-INHIBITS-gngm: @@ -53652,6 +58270,8 @@ components: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -53678,6 +58298,8 @@ components: semantic: BiologicalEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -53704,6 +58326,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-INTERACTS_WITH-hops: @@ -53726,6 +58350,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' horm-INTERACTS_WITH-strd: @@ -53748,6 +58374,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' medd-TREATS-cgab: @@ -53768,8 +58396,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bdsu-LOCATION_OF-imft: @@ -53792,6 +58422,8 @@ components: semantic: BiologicalEntity predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bdsu-LOCATION_OF-imft-rev: @@ -53814,6 +58446,8 @@ components: semantic: AnatomicalEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-AFFECTS-tisu-rev: @@ -53836,8 +58470,34 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' + anab-COEXISTS_WITH-neop: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:neop AND + _exists_:object.umls AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Disease + predicate: coexists_with + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-CAUSES-sosy_umls: - supportBatch: True useTemplating: True @@ -53858,6 +58518,8 @@ components: semantic: PhenotypicFeature predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-CAUSES-sosy_umls-rev: @@ -53880,6 +58542,8 @@ components: semantic: Gene predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' orch-AFFECTS-moft-rev: @@ -53902,6 +58566,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' comd-PREDISPOSES-patf-rev: @@ -53922,8 +58588,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-AFFECTS-dsyn: @@ -53946,6 +58614,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-AFFECTS-dsyn-rev: @@ -53968,6 +58638,8 @@ components: semantic: BiologicalEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-ADMINISTERED_TO-aggp: @@ -53990,6 +58662,8 @@ components: semantic: Cohort predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-ADMINISTERED_TO-aggp-rev: @@ -54012,6 +58686,8 @@ components: semantic: Procedure predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-COEXISTS_WITH-orch: @@ -54034,8 +58710,58 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' + sbst-AFFECTS-moft: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: ChemicalEntity + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:moft AND _exists_:object.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: MolecularActivity + predicate: affects + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' + sbst-AFFECTS-moft-rev: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: MolecularActivity + requestBody: + body: + q: '{{ queryInputs }}' + scopes: object.umls + parameters: + fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:AFFECTS AND subject.semantic_type_abbreviation:sbst AND _exists_:subject.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: ChemicalEntity + predicate: affected_by + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-DISRUPTS-cell: - supportBatch: True useTemplating: True @@ -54056,6 +58782,8 @@ components: semantic: Cell predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-DISRUPTS-cell-rev: @@ -54078,6 +58806,8 @@ components: semantic: Gene predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cgab-AFFECTS-orgf-rev: @@ -54100,6 +58830,8 @@ components: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' diap-DIAGNOSES-emod: @@ -54122,6 +58854,8 @@ components: semantic: BiologicalEntity predicate: diagnoses source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' diap-DIAGNOSES-emod-rev: @@ -54144,6 +58878,8 @@ components: semantic: Procedure predicate: is_diagnosed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-DISRUPTS-bpoc: @@ -54166,6 +58902,8 @@ components: semantic: GrossAnatomicalStructure predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-DISRUPTS-bpoc-rev: @@ -54188,6 +58926,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orgf-PRECEDES-phsf: @@ -54210,6 +58950,8 @@ components: semantic: PhysiologicalProcess predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' food-AFFECTS-celf: @@ -54232,6 +58974,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-PART_OF-emst: @@ -54254,6 +58998,8 @@ components: semantic: GrossAnatomicalStructure predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inch-INTERACTS_WITH-irda-rev: @@ -54276,6 +59022,32 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' + cgab-COEXISTS_WITH-anab-rev: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: object.umls + parameters: + fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:cgab + AND _exists_:subject.umls AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Disease + predicate: coexists_with + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-DISRUPTS-celc: @@ -54298,6 +59070,8 @@ components: semantic: CellularComponent predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-DISRUPTS-celc-rev: @@ -54320,6 +59094,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-STIMULATES-aapp-rev: @@ -54342,6 +59118,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -54366,8 +59144,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-DISRUPTS-cell-rev: @@ -54390,6 +59170,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-STIMULATES-lipd_umls: @@ -54412,6 +59194,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -54438,6 +59222,8 @@ components: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-INHIBITS-fndg-rev: @@ -54460,6 +59246,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -54486,6 +59274,8 @@ components: semantic: Cell predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-PART_OF-cell-rev: @@ -54508,6 +59298,8 @@ components: semantic: Protein predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' irda_umls-INTERACTS_WITH-aapp_ncbigene: @@ -54530,6 +59322,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' irda_umls-INTERACTS_WITH-aapp_ncbigene-rev: @@ -54552,6 +59346,8 @@ components: semantic: DiagnosticAid predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nsba_umls-COEXISTS_WITH-aapp_ncbigene-rev: @@ -54574,6 +59370,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-COEXISTS_WITH-aapp_umls-rev: @@ -54596,6 +59394,8 @@ components: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' rcpt-PART_OF-bpoc: @@ -54618,6 +59418,8 @@ components: semantic: GrossAnatomicalStructure predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-PART_OF-bpoc-rev: @@ -54640,6 +59442,8 @@ components: semantic: Protein predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-AUGMENTS-neop_umls: @@ -54662,6 +59466,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -54688,6 +59494,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -54714,6 +59522,8 @@ components: semantic: BiologicalEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inpo-COEXISTS_WITH-emod-rev: @@ -54736,6 +59546,8 @@ components: semantic: PathologicalProcess predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-AUGMENTS-tisu_umls: @@ -54758,6 +59570,8 @@ components: semantic: GrossAnatomicalStructure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -54784,6 +59598,8 @@ components: semantic: Phenomenon predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -54810,6 +59626,8 @@ components: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -54836,6 +59654,8 @@ components: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' opco-CAUSES-inpo-rev: @@ -54858,6 +59678,8 @@ components: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-CAUSES-phsf-rev: @@ -54880,6 +59702,8 @@ components: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell_umls-INTERACTS_WITH-aapp_ncbigene: @@ -54902,6 +59726,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' aapp-AUGMENTS-inpo: @@ -54924,6 +59750,8 @@ components: semantic: PathologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -54950,6 +59778,8 @@ components: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: @@ -54974,8 +59804,10 @@ components: outputs: - id: UMLS semantic: PathologicalProcess - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-PREVENTS-inpo_umls-rev: @@ -54996,8 +59828,10 @@ components: outputs: - id: NCBIGene semantic: Gene - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' cell-PRODUCES-bdsu: @@ -55020,6 +59854,8 @@ components: semantic: AnatomicalEntity predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-PRODUCES-bdsu-rev: @@ -55042,6 +59878,8 @@ components: semantic: Cell predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-INHIBITS-bacs: @@ -55064,6 +59902,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -55090,6 +59930,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -55116,6 +59958,8 @@ components: semantic: PhysiologicalProcess predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-TREATS-neop-rev: @@ -55136,8 +59980,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-LOCATION_OF-opco: @@ -55160,6 +60006,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' antb-PREVENTS-patf-rev: @@ -55180,8 +60028,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' fngs-CAUSES-patf: @@ -55204,6 +60054,8 @@ components: semantic: PathologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fngs-CAUSES-patf-rev: @@ -55226,6 +60078,8 @@ components: semantic: Fungus predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd-STIMULATES-gngm-rev: @@ -55248,6 +60102,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -55274,6 +60130,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AUGMENTS-sosy: @@ -55296,6 +60154,8 @@ components: semantic: PhenotypicFeature predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -55322,6 +60182,8 @@ components: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -55346,8 +60208,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-TREATS-neop-rev: @@ -55368,8 +60232,10 @@ components: outputs: - id: UMLS semantic: BiologicalEntity - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-CAUSES-sosy: @@ -55392,6 +60258,8 @@ components: semantic: PhenotypicFeature predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-CAUSES-sosy-rev: @@ -55414,6 +60282,8 @@ components: semantic: BiologicalEntity predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bodm-INTERACTS_WITH-orch: @@ -55436,6 +60306,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' tisu-PART_OF-fngs-rev: @@ -55458,6 +60330,8 @@ components: semantic: GrossAnatomicalStructure predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell-LOCATION_OF-nsba: @@ -55480,6 +60354,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' hops-PREVENTS-patf-rev: @@ -55500,8 +60376,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bodm-INTERACTS_WITH-elii: @@ -55524,6 +60402,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-PRODUCES-orch: @@ -55546,6 +60426,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inch-AFFECTS-bpoc-rev: @@ -55568,6 +60450,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-DISRUPTS-ortf: @@ -55590,6 +60474,8 @@ components: semantic: PhysiologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-DISRUPTS-ortf-rev: @@ -55612,6 +60498,8 @@ components: semantic: BiologicalEntity predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' diap-ADMINISTERED_TO-aggp-rev: @@ -55634,6 +60522,8 @@ components: semantic: Procedure predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' eico-AFFECTS-ortf-rev: @@ -55656,6 +60546,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' mobd-COEXISTS_WITH-emod: @@ -55678,6 +60570,8 @@ components: semantic: BiologicalEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' mobd-COEXISTS_WITH-emod-rev: @@ -55700,6 +60594,8 @@ components: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-DISRUPTS-celc-rev: @@ -55722,6 +60618,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-MANIFESTATION_OF-dsyn-rev: @@ -55744,6 +60642,8 @@ components: semantic: Disease predicate: has_manifestation source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bodm-INTERACTS_WITH-inch: @@ -55766,6 +60666,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AFFECTS-comd: @@ -55788,6 +60690,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-CAUSES-phsf_umls: @@ -55810,6 +60714,8 @@ components: semantic: PhysiologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-COEXISTS_WITH-nsba: @@ -55832,6 +60738,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' irda-INTERACTS_WITH-irda: @@ -55854,6 +60762,8 @@ components: semantic: DiagnosticAid predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' irda-INTERACTS_WITH-irda-rev: @@ -55876,6 +60786,8 @@ components: semantic: DiagnosticAid predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' virs-LOCATION_OF-nusq: @@ -55898,6 +60810,8 @@ components: semantic: NucleicAcidEntity predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' virs-LOCATION_OF-nusq-rev: @@ -55920,6 +60834,8 @@ components: semantic: Virus predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' fngs-INTERACTS_WITH-fngs: @@ -55942,6 +60858,8 @@ components: semantic: Fungus predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fngs-INTERACTS_WITH-fngs-rev: @@ -55964,6 +60882,8 @@ components: semantic: Fungus predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-AFFECTS-bpoc-rev: @@ -55986,6 +60906,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-CONVERTS_TO-carb: @@ -56008,6 +60930,8 @@ components: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PREVENTS-dsyn: @@ -56028,8 +60952,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-CAUSES-mobd_umls: @@ -56052,6 +60978,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-INTERACTS_WITH-inch_umls: @@ -56074,6 +61002,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' strd-AFFECTS-bpoc-rev: @@ -56096,6 +61026,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-PRODUCES-nsba: @@ -56118,6 +61050,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' opco-INHIBITS-gngm-rev: @@ -56140,6 +61074,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -56166,6 +61102,8 @@ components: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dora-PREVENTS-patf: @@ -56186,8 +61124,10 @@ components: outputs: - id: UMLS semantic: PathologicalProcess - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dora-PREVENTS-patf-rev: @@ -56208,8 +61148,10 @@ components: outputs: - id: UMLS semantic: Activity - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' antb-AUGMENTS-moft-rev: @@ -56232,6 +61174,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -56258,6 +61202,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-INTERACTS_WITH-antb_umls: @@ -56280,6 +61226,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-DISRUPTS-bpoc-rev: @@ -56302,6 +61250,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-STIMULATES-moft_umls-rev: @@ -56324,6 +61274,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -56350,6 +61302,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-STIMULATES-hops: @@ -56372,6 +61326,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -56398,6 +61354,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' antb-AFFECTS-cell-rev: @@ -56420,6 +61378,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd-INHIBITS-gngm-rev: @@ -56442,6 +61402,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -56468,6 +61430,8 @@ components: semantic: NucleicAcidEntity predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-INTERACTS_WITH-nusq-rev: @@ -56490,6 +61454,8 @@ components: semantic: Polypeptide predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-ASSOCIATED_WITH-sosy_umls: @@ -56512,6 +61478,8 @@ components: semantic: PhenotypicFeature predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-ASSOCIATED_WITH-sosy_umls-rev: @@ -56534,6 +61502,8 @@ components: semantic: Gene predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' inch-AFFECTS-cell-rev: @@ -56556,6 +61526,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' anst-LOCATION_OF-aapp-rev: @@ -56578,6 +61550,8 @@ components: semantic: AnatomicalEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-AUGMENTS-fndg: @@ -56600,6 +61574,8 @@ components: semantic: DiseaseOrPhenotypicFeature predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -56626,6 +61602,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -56652,6 +61630,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -56678,6 +61658,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -56704,6 +61686,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nsba-DISRUPTS-bpoc-rev: @@ -56726,6 +61710,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orgf-PRODUCES-imft-rev: @@ -56748,6 +61734,8 @@ components: semantic: PhysiologicalProcess predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-STIMULATES-aapp-rev: @@ -56770,6 +61758,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -56796,6 +61786,8 @@ components: semantic: GrossAnatomicalStructure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orgf-AFFECTS-bact: @@ -56818,6 +61810,8 @@ components: semantic: Bacterium predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orgf-AFFECTS-bact-rev: @@ -56840,6 +61834,8 @@ components: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-same_as-topp: @@ -56862,6 +61858,8 @@ components: semantic: Procedure predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-same_as-topp-rev: @@ -56884,6 +61882,8 @@ components: semantic: Procedure predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celc_umls-PRODUCES-aapp_ncbigene: @@ -56906,6 +61906,8 @@ components: semantic: Gene predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' celc_umls-PRODUCES-aapp_ncbigene-rev: @@ -56928,6 +61930,8 @@ components: semantic: CellularComponent predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' fngs-LOCATION_OF-inch: @@ -56950,6 +61954,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' carb-AUGMENTS-moft-rev: @@ -56972,6 +61978,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -56998,6 +62006,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -57024,8 +62034,34 @@ components: semantic: Disease predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' + aapp-PART_OF-neop-rev: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: Disease + requestBody: + body: + q: '{{ queryInputs }}' + scopes: object.umls + parameters: + fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Polypeptide + predicate: has_part + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' hops-INHIBITS-nsba-rev: - supportBatch: True useTemplating: True @@ -57046,6 +62082,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -57072,6 +62110,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd-AFFECTS-orgf-rev: @@ -57094,6 +62134,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-AFFECTS-celf: @@ -57116,6 +62158,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-AFFECTS-celf-rev: @@ -57138,6 +62182,8 @@ components: semantic: BiologicalEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bdsu-PART_OF-aggp: @@ -57160,6 +62206,8 @@ components: semantic: Cohort predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bdsu-PART_OF-aggp-rev: @@ -57182,6 +62230,8 @@ components: semantic: AnatomicalEntity predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nnon-INTERACTS_WITH-irda-rev: @@ -57204,6 +62254,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-CONVERTS_TO-orch: @@ -57226,6 +62278,8 @@ components: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cgab-COEXISTS_WITH-patf-rev: @@ -57248,6 +62302,8 @@ components: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-PREDISPOSES-sosy: @@ -57268,8 +62324,10 @@ components: outputs: - id: UMLS semantic: PhenotypicFeature - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-PREDISPOSES-sosy-rev: @@ -57290,8 +62348,10 @@ components: outputs: - id: UMLS semantic: Procedure - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' antb-INHIBITS-bacs-rev: @@ -57314,6 +62374,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -57340,6 +62402,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' comd-PROCESS_OF-emod-rev: @@ -57362,6 +62426,8 @@ components: semantic: Disease predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-TREATS-dsyn-rev: @@ -57382,8 +62448,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell-LOCATION_OF-horm: @@ -57406,6 +62474,32 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' + anab-COEXISTS_WITH-patf: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:patf AND + _exists_:object.umls AND pmid_count:>3 + outputs: + - id: UMLS + semantic: PathologicalProcess + predicate: coexists_with + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' anab-COEXISTS_WITH-patf-rev: @@ -57425,9 +62519,11 @@ components: AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-INTERACTS_WITH-hops_umls: @@ -57450,6 +62546,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' horm-ASSOCIATED_WITH-sosy-rev: @@ -57472,6 +62570,8 @@ components: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-AUGMENTS-ortf-rev: @@ -57494,6 +62594,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -57518,8 +62620,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-AUGMENTS-neop_umls-rev: @@ -57542,6 +62646,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -57568,6 +62674,8 @@ components: semantic: Fungus predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-PART_OF-fngs-rev: @@ -57590,6 +62698,8 @@ components: semantic: NucleicAcidEntity predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsf-PROCESS_OF-emod-rev: @@ -57612,6 +62722,8 @@ components: semantic: PhysiologicalProcess predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-AFFECTS-comd_umls: @@ -57634,6 +62746,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inch-STIMULATES-carb: @@ -57656,6 +62770,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -57682,6 +62798,8 @@ components: semantic: Virus predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bact-INTERACTS_WITH-virs-rev: @@ -57704,6 +62822,8 @@ components: semantic: Bacterium predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' food-PREDISPOSES-fndg: @@ -57724,8 +62844,10 @@ components: outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' food-PREDISPOSES-fndg-rev: @@ -57746,8 +62868,10 @@ components: outputs: - id: UMLS semantic: Food - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsf-PRECEDES-orgf-rev: @@ -57770,6 +62894,8 @@ components: semantic: PhysiologicalProcess predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PREVENTS-acab: @@ -57790,8 +62916,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-INTERACTS_WITH-nusq: @@ -57814,6 +62942,8 @@ components: semantic: NucleicAcidEntity predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-INTERACTS_WITH-nusq-rev: @@ -57836,6 +62966,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd-AUGMENTS-dsyn-rev: @@ -57858,6 +62990,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -57884,6 +63018,8 @@ components: semantic: MolecularActivity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -57910,6 +63046,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -57936,6 +63074,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -57962,6 +63102,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -57988,6 +63130,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell-LOCATION_OF-opco: @@ -58010,6 +63154,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' biof-AFFECTS-patf: @@ -58032,6 +63178,8 @@ components: semantic: PathologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' biof-AFFECTS-patf-rev: @@ -58054,6 +63202,8 @@ components: semantic: Phenomenon predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-AUGMENTS-inpo: @@ -58076,6 +63226,8 @@ components: semantic: PathologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -58102,6 +63254,8 @@ components: semantic: PathologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-AFFECTS-patf-rev: @@ -58124,6 +63278,8 @@ components: semantic: BiologicalEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nsba-AFFECTS-sosy-rev: @@ -58146,6 +63302,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-CAUSES-orgf: @@ -58168,6 +63326,8 @@ components: semantic: PhysiologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bact-ASSOCIATED_WITH-sosy: @@ -58190,6 +63350,8 @@ components: semantic: PhenotypicFeature predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bact-ASSOCIATED_WITH-sosy-rev: @@ -58212,6 +63374,8 @@ components: semantic: Bacterium predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd_umls-INTERACTS_WITH-aapp_ncbigene-rev: @@ -58234,6 +63398,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' virs-LOCATION_OF-orch: @@ -58256,6 +63422,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-PREDISPOSES-mobd: @@ -58276,8 +63444,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' carb_umls-STIMULATES-gngm_ncbigene-rev: @@ -58300,6 +63470,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -58326,6 +63498,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-COEXISTS_WITH-rcpt: @@ -58348,6 +63522,8 @@ components: semantic: Protein predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-COEXISTS_WITH-rcpt-rev: @@ -58370,6 +63546,8 @@ components: semantic: Polypeptide predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-DISRUPTS-inpo: @@ -58392,6 +63570,8 @@ components: semantic: PathologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-DISRUPTS-inpo-rev: @@ -58414,6 +63594,8 @@ components: semantic: Procedure predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-AUGMENTS-emst: @@ -58436,6 +63618,8 @@ components: semantic: GrossAnatomicalStructure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -58459,11 +63643,37 @@ components: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' + aapp-CAUSES-anab-rev: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: object.umls + parameters: + fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Polypeptide + predicate: caused_by + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' orch-CAUSES-acab: - supportBatch: True useTemplating: True @@ -58484,6 +63694,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nsba-AFFECTS-patf-rev: @@ -58506,6 +63718,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' patf-AFFECTS-mobd: @@ -58528,6 +63742,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-MANIFESTATION_OF-mobd: @@ -58550,6 +63766,8 @@ components: semantic: Disease predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-AFFECTS-biof: @@ -58572,6 +63790,8 @@ components: semantic: Phenomenon predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-AFFECTS-biof-rev: @@ -58594,6 +63814,8 @@ components: semantic: PathologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-CAUSES-cgab_umls: @@ -58616,6 +63838,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-INTERACTS_WITH-lipd: @@ -58638,6 +63862,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' hops-COEXISTS_WITH-aapp-rev: @@ -58660,6 +63886,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' clnd-TREATS-neop: @@ -58680,8 +63908,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' elii-INTERACTS_WITH-irda-rev: @@ -58704,6 +63934,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-PRODUCES-horm_umls: @@ -58726,6 +63958,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' elii_umls-STIMULATES-gngm_ncbigene-rev: @@ -58748,6 +63982,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -58774,6 +64010,8 @@ components: semantic: PathologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-INHIBITS-carb: @@ -58796,6 +64034,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -58822,6 +64062,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -58848,6 +64090,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-DISRUPTS-sosy: @@ -58870,6 +64114,8 @@ components: semantic: PhenotypicFeature predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-DISRUPTS-sosy-rev: @@ -58892,6 +64138,8 @@ components: semantic: Polypeptide predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' fngs-LOCATION_OF-nusq: @@ -58914,6 +64162,8 @@ components: semantic: NucleicAcidEntity predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fngs-LOCATION_OF-nusq-rev: @@ -58936,6 +64186,8 @@ components: semantic: Fungus predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-AUGMENTS-moft-rev: @@ -58958,6 +64210,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -58984,6 +64238,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -59010,6 +64266,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-PREDISPOSES-patf_umls-rev: @@ -59030,8 +64288,10 @@ components: outputs: - id: NCBIGene semantic: Gene - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' orgf-OCCURS_IN-aggp: @@ -59054,6 +64314,8 @@ components: semantic: Cohort predicate: occurs_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orgf-OCCURS_IN-aggp-rev: @@ -59076,6 +64338,8 @@ components: semantic: PhysiologicalProcess predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bdsu-LOCATION_OF-lipd: @@ -59098,6 +64362,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' lbtr-COEXISTS_WITH-lbtr: @@ -59120,6 +64386,8 @@ components: semantic: Phenomenon predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' lbtr-COEXISTS_WITH-lbtr-rev: @@ -59142,6 +64410,8 @@ components: semantic: Phenomenon predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-INHIBITS-antb: @@ -59164,6 +64434,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -59190,6 +64462,8 @@ components: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' celf_umls-AFFECTS-bacs_ncbigene-rev: @@ -59212,6 +64486,8 @@ components: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' neop-PRODUCES-nsba: @@ -59234,6 +64510,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' eico-PART_OF-cell-rev: @@ -59256,6 +64534,8 @@ components: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-AFFECTS-acab: @@ -59278,6 +64558,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' horm-DISRUPTS-moft-rev: @@ -59300,6 +64582,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PRODUCES-hops: @@ -59322,6 +64606,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-AUGMENTS-biof: @@ -59344,6 +64630,8 @@ components: semantic: Phenomenon predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -59370,6 +64658,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -59396,6 +64686,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -59422,6 +64714,8 @@ components: semantic: Protein predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celf-PRODUCES-enzy-rev: @@ -59444,6 +64738,8 @@ components: semantic: PhysiologicalProcess predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-INHIBITS-strd: @@ -59466,6 +64762,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -59492,6 +64790,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-PREDISPOSES-dsyn: @@ -59512,8 +64812,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-PREDISPOSES-dsyn-rev: @@ -59534,8 +64836,10 @@ components: outputs: - id: UMLS semantic: BiologicalEntity - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-ASSOCIATED_WITH-dsyn-rev: @@ -59558,6 +64862,8 @@ components: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-AUGMENTS-sosy: @@ -59580,6 +64886,8 @@ components: semantic: PhenotypicFeature predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -59606,6 +64914,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -59632,6 +64942,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-LOCATION_OF-opco: @@ -59654,6 +64966,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-DISRUPTS-patf_umls: @@ -59676,6 +64990,8 @@ components: semantic: PathologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-DISRUPTS-patf_umls-rev: @@ -59698,6 +65014,8 @@ components: semantic: Gene predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' nsba-DISRUPTS-celf-rev: @@ -59720,6 +65038,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' antb-CAUSES-sosy-rev: @@ -59742,6 +65062,8 @@ components: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-PREVENTS-patf_umls: @@ -59762,8 +65084,10 @@ components: outputs: - id: UMLS semantic: PathologicalProcess - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-INTERACTS_WITH-gngm-rev: @@ -59786,6 +65110,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-AFFECTS-bpoc-rev: @@ -59808,6 +65134,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-TREATS-dsyn: @@ -59828,8 +65156,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PREDISPOSES-sosy: @@ -59850,8 +65180,10 @@ components: outputs: - id: UMLS semantic: PhenotypicFeature - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PREDISPOSES-sosy-rev: @@ -59872,8 +65204,10 @@ components: outputs: - id: UMLS semantic: Polypeptide - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-STIMULATES-inch_umls: @@ -59896,6 +65230,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -59920,8 +65256,10 @@ components: outputs: - id: UMLS semantic: PathologicalProcess - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-DISRUPTS-inpo: @@ -59944,6 +65282,8 @@ components: semantic: PathologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' antb-PREDISPOSES-dsyn-rev: @@ -59964,8 +65304,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' mobd-PRECEDES-mobd-rev: @@ -59988,6 +65330,8 @@ components: semantic: Disease predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' biof-AFFECTS-neop: @@ -60010,6 +65354,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-DISRUPTS-moft: @@ -60032,6 +65378,8 @@ components: semantic: MolecularActivity predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-DISRUPTS-moft-rev: @@ -60054,6 +65402,8 @@ components: semantic: BiologicalEntity predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-INHIBITS-horm_umls: @@ -60076,6 +65426,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -60102,6 +65454,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-AUGMENTS-celc-rev: @@ -60124,6 +65478,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -60150,6 +65506,8 @@ components: semantic: PathologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' plnt-LOCATION_OF-phsu: @@ -60172,6 +65530,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nsba-AFFECTS-mobd-rev: @@ -60194,6 +65554,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-AUGMENTS-cell: @@ -60216,6 +65578,8 @@ components: semantic: Cell predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -60242,6 +65606,8 @@ components: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -60268,6 +65634,8 @@ components: semantic: Gene predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' imft_umls-INTERACTS_WITH-gngm_ncbigene: @@ -60290,6 +65658,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' imft_umls-INTERACTS_WITH-gngm_ncbigene-rev: @@ -60312,6 +65682,8 @@ components: semantic: BiologicalEntity predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' food-CAUSES-neop: @@ -60334,6 +65706,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu_ncbigene-TREATS-virs_umls: @@ -60354,8 +65728,10 @@ components: outputs: - id: UMLS semantic: Virus - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu_ncbigene-TREATS-virs_umls-rev: @@ -60376,8 +65752,10 @@ components: outputs: - id: NCBIGene semantic: Gene - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' aapp_ncbigene-AUGMENTS-fndg_umls: @@ -60400,6 +65778,8 @@ components: semantic: DiseaseOrPhenotypicFeature predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -60426,6 +65806,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -60452,6 +65834,8 @@ components: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' inch-AFFECTS-biof-rev: @@ -60474,6 +65858,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-PRODUCES-imft: @@ -60496,6 +65882,8 @@ components: semantic: BiologicalEntity predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PRODUCES-imft-rev: @@ -60518,6 +65906,8 @@ components: semantic: Gene predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-PRODUCES-inch_umls: @@ -60540,6 +65930,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-PRODUCES-inch_umls-rev: @@ -60562,6 +65954,8 @@ components: semantic: Gene predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' celc-LOCATION_OF-eico: @@ -60584,6 +65978,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-INTERACTS_WITH-elii_umls: @@ -60606,6 +66002,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-INTERACTS_WITH-horm: @@ -60628,6 +66026,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' lipd-AFFECTS-dsyn-rev: @@ -60650,6 +66050,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' elii-AFFECTS-biof-rev: @@ -60672,6 +66074,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-STIMULATES-antb: @@ -60694,6 +66098,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -60720,6 +66126,8 @@ components: semantic: GrossAnatomicalStructure predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-ASSOCIATED_WITH-comd: @@ -60742,6 +66150,8 @@ components: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-INTERACTS_WITH-bacs: @@ -60764,6 +66174,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-INTERACTS_WITH-bacs-rev: @@ -60786,6 +66198,8 @@ components: semantic: Protein predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd-COEXISTS_WITH-bacs-rev: @@ -60808,6 +66222,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nnon-DISRUPTS-neop-rev: @@ -60830,6 +66246,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nsba-AFFECTS-moft-rev: @@ -60852,6 +66270,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PART_OF-anst: @@ -60874,6 +66294,8 @@ components: semantic: AnatomicalEntity predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fngs-LOCATION_OF-strd: @@ -60896,6 +66318,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' horm-CONVERTS_TO-horm: @@ -60918,6 +66342,8 @@ components: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' horm-CONVERTS_TO-horm-rev: @@ -60940,6 +66366,8 @@ components: semantic: SmallMolecule predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' irda-INTERACTS_WITH-inch: @@ -60962,6 +66390,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-STIMULATES-bacs: @@ -60984,6 +66414,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -61010,6 +66442,8 @@ components: semantic: BiologicalEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -61036,6 +66470,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' hops_umls-INTERACTS_WITH-gngm_ncbigene-rev: @@ -61058,6 +66494,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-INTERACTS_WITH-rcpt: @@ -61080,6 +66518,8 @@ components: semantic: Protein predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-INTERACTS_WITH-rcpt-rev: @@ -61102,6 +66542,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-AFFECTS-sosy-rev: @@ -61124,6 +66566,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' sosy-COEXISTS_WITH-lbtr: @@ -61146,6 +66590,8 @@ components: semantic: Phenomenon predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' sosy-COEXISTS_WITH-lbtr-rev: @@ -61168,6 +66614,8 @@ components: semantic: PhenotypicFeature predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-AFFECTS-dsyn-rev: @@ -61190,6 +66638,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-PREDISPOSES-dsyn-rev: @@ -61210,8 +66660,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-DISRUPTS-tisu: @@ -61234,6 +66686,32 @@ components: semantic: GrossAnatomicalStructure predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' + sbst-CAUSES-comd: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: ChemicalEntity + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:comd AND _exists_:object.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Disease + predicate: causes + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-COEXISTS_WITH-lipd_umls: @@ -61256,6 +66734,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' emst-PART_OF-neop-rev: @@ -61278,6 +66758,8 @@ components: semantic: GrossAnatomicalStructure predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' sosy-ASSOCIATED_WITH-bact: @@ -61300,6 +66782,8 @@ components: semantic: Bacterium predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' sosy-ASSOCIATED_WITH-bact-rev: @@ -61322,6 +66806,8 @@ components: semantic: PhenotypicFeature predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-INHIBITS-aapp-rev: @@ -61344,6 +66830,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -61370,6 +66858,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-TREATS-dsyn_umls-rev: @@ -61390,8 +66880,10 @@ components: outputs: - id: NCBIGene semantic: Gene - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' inch-AFFECTS-comd-rev: @@ -61414,6 +66906,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-DISRUPTS-biof: @@ -61436,6 +66930,8 @@ components: semantic: Phenomenon predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-DISRUPTS-biof-rev: @@ -61458,6 +66954,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-PART_OF-nusq_umls: @@ -61480,6 +66978,8 @@ components: semantic: NucleicAcidEntity predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-PART_OF-nusq_umls-rev: @@ -61502,6 +67002,8 @@ components: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' aapp-TREATS-patf: @@ -61522,8 +67024,10 @@ components: outputs: - id: UMLS semantic: PathologicalProcess - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-TREATS-patf-rev: @@ -61544,8 +67048,10 @@ components: outputs: - id: UMLS semantic: Polypeptide - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-INTERACTS_WITH-imft_umls: @@ -61568,6 +67074,8 @@ components: semantic: BiologicalEntity predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-INTERACTS_WITH-imft_umls-rev: @@ -61590,6 +67098,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' horm-PREDISPOSES-patf-rev: @@ -61610,8 +67120,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celf-PRODUCES-aapp: @@ -61634,6 +67146,8 @@ components: semantic: Polypeptide predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celf-PRODUCES-aapp-rev: @@ -61656,6 +67170,8 @@ components: semantic: PhysiologicalProcess predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' eico-DISRUPTS-celf-rev: @@ -61678,6 +67194,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-AUGMENTS-dsyn_umls: @@ -61700,6 +67218,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -61726,6 +67246,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' comd-MANIFESTATION_OF-inpo: @@ -61748,6 +67270,8 @@ components: semantic: PathologicalProcess predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' comd-MANIFESTATION_OF-inpo-rev: @@ -61770,6 +67294,8 @@ components: semantic: Disease predicate: has_manifestation source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-COMPLICATES-patf: @@ -61790,8 +67316,10 @@ components: outputs: - id: UMLS semantic: PathologicalProcess - predicate: exacerbates + predicate: exacerbates_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-COMPLICATES-patf-rev: @@ -61812,10 +67340,36 @@ components: outputs: - id: UMLS semantic: Disease - predicate: is_exacerbated_by + predicate: condition_exacerbated_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' + anab-AFFECTS-orgf: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:orgf AND _exists_:object.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: PhysiologicalProcess + predicate: affects + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' anab-AFFECTS-orgf-rev: - supportBatch: True useTemplating: True @@ -61833,9 +67387,11 @@ components: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-DISRUPTS-patf-rev: @@ -61858,6 +67414,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd-STIMULATES-bacs-rev: @@ -61880,6 +67438,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -61906,6 +67466,8 @@ components: semantic: CellularComponent predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -61932,6 +67494,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -61958,6 +67522,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' eico-ASSOCIATED_WITH-patf-rev: @@ -61980,6 +67546,8 @@ components: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' acab-LOCATION_OF-fngs: @@ -62002,6 +67570,8 @@ components: semantic: Fungus predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' acab-LOCATION_OF-fngs-rev: @@ -62024,6 +67594,8 @@ components: semantic: Disease predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bdsu-LOCATION_OF-carb: @@ -62046,6 +67618,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-STIMULATES-phsu_umls: @@ -62068,6 +67642,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -62094,6 +67670,8 @@ components: semantic: MolecularActivity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-AFFECTS-moft-rev: @@ -62116,6 +67694,8 @@ components: semantic: NucleicAcidEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' irda-INTERACTS_WITH-nnon: @@ -62138,6 +67718,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-AFFECTS-fndg-rev: @@ -62160,6 +67742,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-AFFECTS-orgf: @@ -62182,6 +67766,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-STIMULATES-lipd: @@ -62204,6 +67790,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -62230,6 +67818,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-PART_OF-fngs-rev: @@ -62252,6 +67842,8 @@ components: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-INTERACTS_WITH-inch: @@ -62274,6 +67866,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' moft_umls-AFFECTS-aapp_ncbigene: @@ -62296,6 +67890,8 @@ components: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' orch-AUGMENTS-mobd: @@ -62318,6 +67914,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -62344,6 +67942,8 @@ components: semantic: DiagnosticAid predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-INTERACTS_WITH-irda_umls-rev: @@ -62366,6 +67966,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' elii-AFFECTS-inpo-rev: @@ -62388,6 +67990,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' acab-PART_OF-virs-rev: @@ -62410,6 +68014,8 @@ components: semantic: Disease predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-PREDISPOSES-patf-rev: @@ -62430,8 +68036,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-AFFECTS-inpo-rev: @@ -62454,6 +68062,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-AFFECTS-phsf: @@ -62476,6 +68086,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' plnt-LOCATION_OF-gngm: @@ -62498,6 +68110,8 @@ components: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' plnt-LOCATION_OF-gngm-rev: @@ -62520,6 +68134,8 @@ components: semantic: Plant predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-ASSOCIATED_WITH-sosy-rev: @@ -62542,6 +68158,8 @@ components: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-INHIBITS-imft: @@ -62564,6 +68182,8 @@ components: semantic: BiologicalEntity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -62590,6 +68210,8 @@ components: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -62616,6 +68238,8 @@ components: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' moft-PROCESS_OF-aggp: @@ -62638,6 +68262,8 @@ components: semantic: Cohort predicate: occurs_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' moft-PROCESS_OF-aggp-rev: @@ -62660,6 +68286,8 @@ components: semantic: MolecularActivity predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' sosy-PREDISPOSES-neop: @@ -62680,8 +68308,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' strd-AFFECTS-dsyn-rev: @@ -62704,6 +68334,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-INTERACTS_WITH-carb_umls: @@ -62726,6 +68358,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' elii-CAUSES-sosy-rev: @@ -62748,6 +68382,8 @@ components: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' eehu-CAUSES-dsyn: @@ -62770,6 +68406,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' eehu-CAUSES-dsyn-rev: @@ -62792,6 +68430,8 @@ components: semantic: Phenomenon predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-DISRUPTS-patf: @@ -62814,6 +68454,8 @@ components: semantic: PathologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-DISRUPTS-patf-rev: @@ -62836,6 +68478,8 @@ components: semantic: Gene predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orgf-PRODUCES-enzy-rev: @@ -62858,6 +68502,8 @@ components: semantic: PhysiologicalProcess predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-AFFECTS-patf-rev: @@ -62880,6 +68526,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celc-LOCATION_OF-phsu: @@ -62902,6 +68550,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' opco-TREATS-dsyn-rev: @@ -62922,8 +68572,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-AUGMENTS-fndg-rev: @@ -62946,6 +68598,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -62972,6 +68626,8 @@ components: semantic: PathologicalProcess predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-PRODUCES-eico: @@ -62994,6 +68650,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-PRECEDES-imft: @@ -63016,6 +68674,8 @@ components: semantic: BiologicalEntity predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-PRECEDES-imft-rev: @@ -63038,6 +68698,8 @@ components: semantic: Procedure predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-CONVERTS_TO-elii: @@ -63060,6 +68722,8 @@ components: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fndg-PREDISPOSES-ortf: @@ -63080,8 +68744,10 @@ components: outputs: - id: UMLS semantic: PhysiologicalProcess - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fndg-PREDISPOSES-ortf-rev: @@ -63102,8 +68768,10 @@ components: outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-AFFECTS-inpo-rev: @@ -63126,6 +68794,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_umls-INHIBITS-aapp_ncbigene: @@ -63148,6 +68818,8 @@ components: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: @@ -63172,8 +68844,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-PRODUCES-nsba: @@ -63196,6 +68870,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-INTERACTS_WITH-gngm: @@ -63218,6 +68894,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-INTERACTS_WITH-gngm-rev: @@ -63240,6 +68918,8 @@ components: semantic: BiologicalEntity predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft_umls-COEXISTS_WITH-gngm_ncbigene: @@ -63262,6 +68942,8 @@ components: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' imft_umls-COEXISTS_WITH-gngm_ncbigene-rev: @@ -63284,6 +68966,8 @@ components: semantic: BiologicalEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-AUGMENTS-patf_umls: @@ -63306,6 +68990,8 @@ components: semantic: PathologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -63332,6 +69018,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -63358,6 +69046,8 @@ components: semantic: Disease predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-AFFECTS-celc-rev: @@ -63380,6 +69070,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-INTERACTS_WITH-rcpt-rev: @@ -63402,6 +69094,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-AFFECTS-tisu: @@ -63424,6 +69118,8 @@ components: semantic: GrossAnatomicalStructure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' hops-INHIBITS-aapp-rev: @@ -63446,6 +69142,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -63472,6 +69170,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -63498,6 +69198,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' eico-STIMULATES-eico: @@ -63520,6 +69222,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -63546,6 +69250,8 @@ components: semantic: Phenomenon predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' food-AFFECTS-biof-rev: @@ -63568,6 +69274,8 @@ components: semantic: Food predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' elii-AFFECTS-celc-rev: @@ -63590,6 +69298,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' enzy-PART_OF-virs: @@ -63612,6 +69322,8 @@ components: semantic: Virus predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' enzy-PART_OF-virs-rev: @@ -63634,6 +69346,8 @@ components: semantic: Protein predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd-TREATS-patf-rev: @@ -63654,8 +69368,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-INTERACTS_WITH-gngm-rev: @@ -63678,6 +69394,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-same_as-orch: @@ -63700,6 +69418,8 @@ components: semantic: SmallMolecule predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-same_as-orch-rev: @@ -63722,6 +69442,8 @@ components: semantic: SmallMolecule predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-AFFECTS-cell_umls-rev: @@ -63744,6 +69466,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' irda-INTERACTS_WITH-phsu: @@ -63766,6 +69490,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AUGMENTS-comd: @@ -63788,6 +69514,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -63814,6 +69542,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-AFFECTS-cell-rev: @@ -63836,6 +69566,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lbtr-COEXISTS_WITH-sosy: @@ -63858,6 +69590,8 @@ components: semantic: PhenotypicFeature predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' lbtr-COEXISTS_WITH-sosy-rev: @@ -63880,6 +69614,8 @@ components: semantic: Phenomenon predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-STIMULATES-strd: @@ -63902,6 +69638,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -63928,6 +69666,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' eico-CAUSES-patf-rev: @@ -63950,6 +69690,8 @@ components: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu_ncbigene-INHIBITS-ortf_umls: @@ -63972,6 +69714,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -63998,6 +69742,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -64024,6 +69770,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-AUGMENTS-mobd: @@ -64046,6 +69794,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -64072,6 +69822,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd-INHIBITS-bacs-rev: @@ -64094,6 +69846,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -64120,6 +69874,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -64146,6 +69902,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-DISRUPTS-patf_umls-rev: @@ -64168,6 +69926,8 @@ components: semantic: Gene predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' aapp-CAUSES-sosy: @@ -64190,30 +69950,10 @@ components: semantic: PhenotypicFeature predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' - aapp-CAUSES-sosy-rev: - - supportBatch: True - useTemplating: True - inputs: - - id: UMLS - semantic: PhenotypicFeature - requestBody: - body: - q: '{{ queryInputs }}' - scopes: object.umls - parameters: - fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name - size: 1000 - filter: predicate:CAUSES AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls - AND pmid_count:>3 - outputs: - - id: UMLS - semantic: Polypeptide - predicate: caused_by - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' patf-MANIFESTATION_OF-orgf: - supportBatch: True useTemplating: True @@ -64234,6 +69974,8 @@ components: semantic: PhysiologicalProcess predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-MANIFESTATION_OF-orgf-rev: @@ -64256,6 +69998,8 @@ components: semantic: PathologicalProcess predicate: has_manifestation source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-AUGMENTS-patf_umls-rev: @@ -64278,6 +70022,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -64304,6 +70050,8 @@ components: semantic: Disease predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' emst-LOCATION_OF-nusq-rev: @@ -64326,6 +70074,8 @@ components: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-INHIBITS-aapp-rev: @@ -64348,6 +70098,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -64374,6 +70126,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -64400,6 +70154,8 @@ components: semantic: Gene predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-CONVERTS_TO-gngm-rev: @@ -64422,6 +70178,8 @@ components: semantic: SmallMolecule predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-INTERACTS_WITH-gngm-rev: @@ -64444,6 +70202,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu_umls-COEXISTS_WITH-gngm_ncbigene-rev: @@ -64466,6 +70226,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-CAUSES-sosy-rev: @@ -64488,6 +70250,8 @@ components: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' tisu-LOCATION_OF-emod-rev: @@ -64510,8 +70274,34 @@ components: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' + sbst-CAUSES-mobd: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: ChemicalEntity + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:mobd AND _exists_:object.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Disease + predicate: causes + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' bact-INTERACTS_WITH-fngs: - supportBatch: True useTemplating: True @@ -64532,6 +70322,8 @@ components: semantic: Fungus predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bact-INTERACTS_WITH-fngs-rev: @@ -64554,8 +70346,34 @@ components: semantic: Bacterium predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' + anab-OCCURS_IN-aggp: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:OCCURS_IN AND object.semantic_type_abbreviation:aggp AND _exists_:object.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Cohort + predicate: occurs_in + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' anab-OCCURS_IN-aggp-rev: - supportBatch: True useTemplating: True @@ -64573,9 +70391,11 @@ components: _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-AUGMENTS-fndg_umls-rev: @@ -64598,6 +70418,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -64624,6 +70446,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' rcpt_umls-INTERACTS_WITH-aapp_ncbigene-rev: @@ -64646,6 +70470,8 @@ components: semantic: Protein predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-PREVENTS-virs: @@ -64666,8 +70492,10 @@ components: outputs: - id: UMLS semantic: Virus - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-PREVENTS-virs-rev: @@ -64688,8 +70516,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsf-AFFECTS-plnt: @@ -64712,6 +70542,8 @@ components: semantic: Plant predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsf-AFFECTS-plnt-rev: @@ -64734,6 +70566,8 @@ components: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-AUGMENTS-phsf: @@ -64756,6 +70590,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -64782,6 +70618,8 @@ components: semantic: BiologicalEntity predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' blor-LOCATION_OF-emod-rev: @@ -64804,6 +70642,8 @@ components: semantic: AnatomicalEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bact_umls-INTERACTS_WITH-aapp_ncbigene: @@ -64826,6 +70666,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' bact_umls-INTERACTS_WITH-aapp_ncbigene-rev: @@ -64848,6 +70690,8 @@ components: semantic: Bacterium predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-same_as-aapp: @@ -64870,6 +70714,8 @@ components: semantic: Polypeptide predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-same_as-aapp-rev: @@ -64892,6 +70738,8 @@ components: semantic: Polypeptide predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd-ASSOCIATED_WITH-sosy-rev: @@ -64914,6 +70762,8 @@ components: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-INTERACTS_WITH-elii: @@ -64936,6 +70786,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' neop-COMPLICATES-dsyn-rev: @@ -64956,8 +70808,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: is_exacerbated_by + predicate: condition_exacerbated_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' virs-CAUSES-ortf: @@ -64980,6 +70834,8 @@ components: semantic: PhysiologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' virs-CAUSES-ortf-rev: @@ -65002,6 +70858,8 @@ components: semantic: Virus predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-CAUSES-dsyn: @@ -65024,6 +70882,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-CAUSES-dsyn-rev: @@ -65046,6 +70906,8 @@ components: semantic: NucleicAcidEntity predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-CAUSES-celf-rev: @@ -65068,6 +70930,8 @@ components: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-ASSOCIATED_WITH-neop: @@ -65090,6 +70954,8 @@ components: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-ASSOCIATED_WITH-neop-rev: @@ -65112,6 +70978,8 @@ components: semantic: Protein predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' eico-CONVERTS_TO-bacs-rev: @@ -65134,6 +71002,8 @@ components: semantic: SmallMolecule predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dora-STIMULATES-topp: @@ -65156,6 +71026,8 @@ components: semantic: Procedure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -65182,6 +71054,8 @@ components: semantic: Activity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -65208,6 +71082,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -65234,6 +71110,8 @@ components: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AFFECTS-inpo: @@ -65256,6 +71134,8 @@ components: semantic: PathologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' virs-CAUSES-comd: @@ -65278,6 +71158,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-AFFECTS-acab_umls: @@ -65300,6 +71182,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' ortf-AFFECTS-biof-rev: @@ -65322,8 +71206,34 @@ components: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' + sbst-CAUSES-neop: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: ChemicalEntity + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:neop AND _exists_:object.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Disease + predicate: causes + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-INHIBITS-gngm: - supportBatch: True useTemplating: True @@ -65344,6 +71254,8 @@ components: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -65370,6 +71282,8 @@ components: semantic: Protein predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -65394,8 +71308,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' neop-AFFECTS-biof-rev: @@ -65418,6 +71334,8 @@ components: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celc-LOCATION_OF-nsba: @@ -65440,6 +71358,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celf-AFFECTS-aapp: @@ -65462,6 +71382,8 @@ components: semantic: Polypeptide predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celf-AFFECTS-aapp-rev: @@ -65484,6 +71406,8 @@ components: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-DISRUPTS-ortf: @@ -65506,6 +71430,8 @@ components: semantic: PhysiologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-DISRUPTS-ortf-rev: @@ -65528,6 +71454,8 @@ components: semantic: Protein predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-STIMULATES-aapp-rev: @@ -65550,6 +71478,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -65576,6 +71506,8 @@ components: semantic: Disease predicate: diagnoses source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' sosy-DIAGNOSES-cgab-rev: @@ -65598,6 +71530,8 @@ components: semantic: PhenotypicFeature predicate: is_diagnosed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-INTERACTS_WITH-opco: @@ -65620,6 +71554,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-CONVERTS_TO-gngm_umls: @@ -65642,6 +71578,8 @@ components: semantic: Gene predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-CONVERTS_TO-gngm_umls-rev: @@ -65664,6 +71602,8 @@ components: semantic: Gene predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' aapp_ncbigene-DISRUPTS-bpoc_umls: @@ -65686,6 +71626,8 @@ components: semantic: GrossAnatomicalStructure predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-DISRUPTS-bpoc_umls-rev: @@ -65708,6 +71650,8 @@ components: semantic: Gene predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' imft_umls-INTERACTS_WITH-aapp_ncbigene: @@ -65730,6 +71674,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' dsyn-MANIFESTATION_OF-orgf: @@ -65752,6 +71698,8 @@ components: semantic: PhysiologicalProcess predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-MANIFESTATION_OF-orgf-rev: @@ -65774,6 +71722,8 @@ components: semantic: Disease predicate: has_manifestation source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-COEXISTS_WITH-phsu: @@ -65796,6 +71746,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' eico-AFFECTS-bpoc-rev: @@ -65818,6 +71770,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-DISRUPTS-orgf: @@ -65840,6 +71794,8 @@ components: semantic: PhysiologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' antb-AFFECTS-patf-rev: @@ -65862,6 +71818,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bact-LOCATION_OF-antb: @@ -65884,6 +71842,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-DISRUPTS-sosy-rev: @@ -65906,6 +71866,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-AFFECTS-biof-rev: @@ -65928,6 +71890,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bdsu-LOCATION_OF-strd: @@ -65950,6 +71914,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' irda-CAUSES-anab: @@ -65969,11 +71935,37 @@ components: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' + irda-CAUSES-anab-rev: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: object.umls + parameters: + fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:irda AND _exists_:subject.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: DiagnosticAid + predicate: caused_by + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-PART_OF-aapp_umls-rev: - supportBatch: True useTemplating: True @@ -65994,6 +71986,8 @@ components: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' diap_umls-USES-phsu_ncbigene: @@ -66016,6 +72010,8 @@ components: semantic: Gene predicate: has_input source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' diap_umls-USES-phsu_ncbigene-rev: @@ -66038,6 +72034,8 @@ components: semantic: Procedure predicate: is_input_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' food-AFFECTS-comd: @@ -66060,6 +72058,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' enzy-DISRUPTS-ortf-rev: @@ -66082,6 +72082,8 @@ components: semantic: Protein predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' irda-INTERACTS_WITH-bodm: @@ -66104,6 +72106,8 @@ components: semantic: Device predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' irda-INTERACTS_WITH-bodm-rev: @@ -66126,6 +72130,8 @@ components: semantic: DiagnosticAid predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inpo-AFFECTS-lbtr: @@ -66148,6 +72154,8 @@ components: semantic: Phenomenon predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inpo-AFFECTS-lbtr-rev: @@ -66170,6 +72178,8 @@ components: semantic: PathologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-INHIBITS-eico: @@ -66192,6 +72202,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -66218,6 +72230,8 @@ components: semantic: GrossAnatomicalStructure predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-DISRUPTS-tisu-rev: @@ -66240,6 +72254,8 @@ components: semantic: Gene predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-AFFECTS-emod: @@ -66262,6 +72278,8 @@ components: semantic: BiologicalEntity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AFFECTS-emod-rev: @@ -66284,6 +72302,8 @@ components: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' opco-DISRUPTS-cell-rev: @@ -66306,6 +72326,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' fngs-INTERACTS_WITH-bact: @@ -66328,6 +72350,8 @@ components: semantic: Bacterium predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fngs-INTERACTS_WITH-bact-rev: @@ -66350,6 +72374,8 @@ components: semantic: Fungus predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-STIMULATES-orch: @@ -66372,6 +72398,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -66398,6 +72426,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' elii_umls-INTERACTS_WITH-aapp_ncbigene-rev: @@ -66420,6 +72450,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' antb-DISRUPTS-cell-rev: @@ -66442,6 +72474,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inpo-DISRUPTS-bpoc: @@ -66464,6 +72498,8 @@ components: semantic: GrossAnatomicalStructure predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inpo-DISRUPTS-bpoc-rev: @@ -66486,6 +72522,8 @@ components: semantic: PathologicalProcess predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm_ncbigene-TREATS-patf_umls: @@ -66506,8 +72544,10 @@ components: outputs: - id: UMLS semantic: PathologicalProcess - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' horm_ncbigene-TREATS-patf_umls-rev: @@ -66528,8 +72568,10 @@ components: outputs: - id: NCBIGene semantic: Gene - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' carb-CONVERTS_TO-carb-rev: @@ -66552,6 +72594,8 @@ components: semantic: SmallMolecule predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-AUGMENTS-patf: @@ -66574,6 +72618,8 @@ components: semantic: PathologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -66600,6 +72646,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -66624,8 +72672,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft_ncbigene-PREVENTS-dsyn_umls-rev: @@ -66646,8 +72696,10 @@ components: outputs: - id: NCBIGene semantic: Gene - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' vita-ASSOCIATED_WITH-patf-rev: @@ -66670,6 +72722,8 @@ components: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-COEXISTS_WITH-hops: @@ -66692,6 +72746,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' eico-AUGMENTS-bpoc-rev: @@ -66714,6 +72770,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -66740,6 +72798,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inpo-DISRUPTS-ortf: @@ -66762,6 +72822,8 @@ components: semantic: PhysiologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-MANIFESTATION_OF-neop: @@ -66784,6 +72846,8 @@ components: semantic: Disease predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-PREDISPOSES-sosy: @@ -66804,8 +72868,10 @@ components: outputs: - id: UMLS semantic: PhenotypicFeature - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-PREDISPOSES-sosy-rev: @@ -66826,8 +72892,10 @@ components: outputs: - id: UMLS semantic: PathologicalProcess - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-INTERACTS_WITH-gngm: @@ -66850,6 +72918,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-INTERACTS_WITH-gngm-rev: @@ -66872,6 +72942,8 @@ components: semantic: NucleicAcidEntity predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-DISRUPTS-phsf_umls: @@ -66894,6 +72966,8 @@ components: semantic: PhysiologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' biof-AFFECTS-phsf: @@ -66916,6 +72990,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fndg-COMPLICATES-dsyn: @@ -66936,8 +73012,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: exacerbates + predicate: exacerbates_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fndg-COMPLICATES-dsyn-rev: @@ -66958,8 +73036,10 @@ components: outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - predicate: is_exacerbated_by + predicate: condition_exacerbated_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celf-PROCESS_OF-aggp-rev: @@ -66982,6 +73062,8 @@ components: semantic: PhysiologicalProcess predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-AUGMENTS-moft: @@ -67004,6 +73086,8 @@ components: semantic: MolecularActivity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -67030,6 +73114,8 @@ components: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -67056,6 +73142,8 @@ components: semantic: BiologicalEntity predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-INTERACTS_WITH-imft-rev: @@ -67078,6 +73166,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' antb-INHIBITS-aapp-rev: @@ -67100,6 +73190,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -67126,6 +73218,8 @@ components: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' rcpt_umls-COEXISTS_WITH-gngm_ncbigene-rev: @@ -67148,6 +73242,8 @@ components: semantic: Protein predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-INTERACTS_WITH-orch: @@ -67170,6 +73266,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-AFFECTS-emst: @@ -67192,6 +73290,8 @@ components: semantic: GrossAnatomicalStructure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-INTERACTS_WITH-antb: @@ -67214,6 +73314,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orgf-PRODUCES-aggp: @@ -67236,6 +73338,8 @@ components: semantic: Cohort predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orgf-PRODUCES-aggp-rev: @@ -67258,6 +73362,8 @@ components: semantic: PhysiologicalProcess predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-INTERACTS_WITH-imft_umls-rev: @@ -67280,6 +73386,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' inch-DISRUPTS-neop-rev: @@ -67302,6 +73410,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bodm-CAUSES-comd: @@ -67324,6 +73434,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nsba-DISRUPTS-cell-rev: @@ -67346,6 +73458,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bdsu-CAUSES-inpo: @@ -67368,6 +73482,8 @@ components: semantic: PathologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_umls-CONVERTS_TO-gngm_ncbigene: @@ -67390,6 +73506,8 @@ components: semantic: Gene predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' aapp_umls-CONVERTS_TO-gngm_ncbigene-rev: @@ -67412,6 +73530,8 @@ components: semantic: Polypeptide predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-DISRUPTS-celf: @@ -67434,6 +73554,8 @@ components: semantic: PhysiologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-DISRUPTS-ortf: @@ -67456,6 +73578,8 @@ components: semantic: PhysiologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AFFECTS-cell: @@ -67478,6 +73602,8 @@ components: semantic: Cell predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AFFECTS-cell-rev: @@ -67500,6 +73626,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-AUGMENTS-comd_umls: @@ -67522,6 +73650,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -67548,6 +73678,8 @@ components: semantic: BiologicalEntity predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' neop-PRODUCES-imft-rev: @@ -67570,6 +73702,8 @@ components: semantic: Disease predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' sosy-DIAGNOSES-anab: @@ -67589,11 +73723,37 @@ components: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: diagnoses source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' + sosy-DIAGNOSES-anab-rev: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: object.umls + parameters: + fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:DIAGNOSES AND subject.semantic_type_abbreviation:sosy AND + _exists_:subject.umls AND pmid_count:>3 + outputs: + - id: UMLS + semantic: PhenotypicFeature + predicate: is_diagnosed_by + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' food-ASSOCIATED_WITH-inpo: - supportBatch: True useTemplating: True @@ -67614,6 +73774,8 @@ components: semantic: PathologicalProcess predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' food-ASSOCIATED_WITH-inpo-rev: @@ -67636,6 +73798,8 @@ components: semantic: Food predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-AUGMENTS-bpoc-rev: @@ -67658,6 +73822,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -67684,6 +73850,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' sosy-MANIFESTATION_OF-patf: @@ -67706,6 +73874,8 @@ components: semantic: PathologicalProcess predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' sosy-MANIFESTATION_OF-patf-rev: @@ -67728,6 +73898,8 @@ components: semantic: PhenotypicFeature predicate: has_manifestation source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd-COEXISTS_WITH-aapp-rev: @@ -67750,6 +73922,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' biof-AFFECTS-bact: @@ -67772,6 +73946,8 @@ components: semantic: Bacterium predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' biof-AFFECTS-bact-rev: @@ -67794,6 +73970,8 @@ components: semantic: Phenomenon predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-COEXISTS_WITH-strd: @@ -67816,6 +73994,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PREDISPOSES-inpo: @@ -67836,8 +74016,10 @@ components: outputs: - id: UMLS semantic: PathologicalProcess - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inch-PREDISPOSES-dsyn-rev: @@ -67858,8 +74040,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-AFFECTS-inpo_umls: @@ -67882,6 +74066,8 @@ components: semantic: PathologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsf-AFFECTS-biof-rev: @@ -67904,6 +74090,8 @@ components: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-DISRUPTS-dsyn_umls: @@ -67926,6 +74114,8 @@ components: semantic: Disease predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-PRECEDES-mobd: @@ -67948,6 +74138,8 @@ components: semantic: Disease predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-AFFECTS-neop: @@ -67970,6 +74162,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-ADMINISTERED_TO-cell: @@ -67992,6 +74186,8 @@ components: semantic: Cell predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-ADMINISTERED_TO-cell-rev: @@ -68014,6 +74210,8 @@ components: semantic: Gene predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' tisu-LOCATION_OF-antb: @@ -68036,6 +74234,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-MANIFESTATION_OF-celf: @@ -68058,6 +74258,8 @@ components: semantic: PhysiologicalProcess predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' neop-PART_OF-aggp-rev: @@ -68080,6 +74282,8 @@ components: semantic: Disease predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' antb-AFFECTS-celc-rev: @@ -68102,6 +74306,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-INTERACTS_WITH-rcpt_umls: @@ -68124,6 +74330,8 @@ components: semantic: Protein predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-INTERACTS_WITH-rcpt_umls-rev: @@ -68146,6 +74354,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' aapp-CONVERTS_TO-elii: @@ -68168,6 +74378,8 @@ components: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' comd-OCCURS_IN-neop: @@ -68190,6 +74402,8 @@ components: semantic: Disease predicate: occurs_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' comd-OCCURS_IN-neop-rev: @@ -68212,6 +74426,8 @@ components: semantic: Disease predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-PREVENTS-neop_umls: @@ -68232,8 +74448,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-PREVENTS-neop_umls-rev: @@ -68254,8 +74472,10 @@ components: outputs: - id: NCBIGene semantic: Gene - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' biof-PRODUCES-bacs: @@ -68278,6 +74498,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' biof-PRODUCES-bacs-rev: @@ -68300,6 +74522,8 @@ components: semantic: Phenomenon predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' anst-LOCATION_OF-orch-rev: @@ -68322,6 +74546,8 @@ components: semantic: AnatomicalEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd-PART_OF-cell-rev: @@ -68344,6 +74570,8 @@ components: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-PREDISPOSES-patf-rev: @@ -68364,8 +74592,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_umls-PART_OF-aapp_ncbigene: @@ -68388,6 +74618,8 @@ components: semantic: Gene predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' aapp_umls-PART_OF-aapp_ncbigene-rev: @@ -68410,6 +74642,8 @@ components: semantic: Polypeptide predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' comd-AFFECTS-biof-rev: @@ -68432,6 +74666,8 @@ components: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celc-PRODUCES-orch: @@ -68454,6 +74690,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-STIMULATES-imft: @@ -68476,6 +74714,8 @@ components: semantic: BiologicalEntity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -68502,6 +74742,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -68528,6 +74770,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' irda-INTERACTS_WITH-lipd: @@ -68550,6 +74794,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-AFFECTS-bact: @@ -68572,6 +74818,8 @@ components: semantic: Bacterium predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-AFFECTS-bact-rev: @@ -68594,6 +74842,8 @@ components: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-STIMULATES-imft: @@ -68616,6 +74866,8 @@ components: semantic: BiologicalEntity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -68642,6 +74894,8 @@ components: semantic: BiologicalEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -68668,6 +74922,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-AFFECTS-celf-rev: @@ -68690,6 +74946,8 @@ components: semantic: Protein predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-AFFECTS-fndg: @@ -68712,6 +74970,8 @@ components: semantic: DiseaseOrPhenotypicFeature predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AFFECTS-fndg-rev: @@ -68734,6 +74994,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-AFFECTS-biof-rev: @@ -68756,6 +75018,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-AUGMENTS-acab: @@ -68778,6 +75042,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -68804,6 +75070,8 @@ components: semantic: Polypeptide predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-PRODUCES-aapp-rev: @@ -68826,6 +75094,8 @@ components: semantic: PathologicalProcess predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' patf-AFFECTS-virs: @@ -68848,6 +75118,8 @@ components: semantic: Virus predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-AFFECTS-virs-rev: @@ -68870,6 +75142,8 @@ components: semantic: PathologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-COEXISTS_WITH-imft: @@ -68892,6 +75166,8 @@ components: semantic: BiologicalEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-COEXISTS_WITH-imft-rev: @@ -68914,6 +75190,8 @@ components: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cgab-LOCATION_OF-virs: @@ -68936,6 +75214,8 @@ components: semantic: Virus predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cgab-LOCATION_OF-virs-rev: @@ -68958,6 +75238,8 @@ components: semantic: Disease predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' fngs_umls-LOCATION_OF-gngm_ncbigene: @@ -68980,6 +75262,8 @@ components: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' topp-USES-nnon: @@ -69002,6 +75286,8 @@ components: semantic: SmallMolecule predicate: has_input source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' carb-CAUSES-sosy-rev: @@ -69024,6 +75310,8 @@ components: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' eico-AFFECTS-cell-rev: @@ -69046,6 +75334,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-DISRUPTS-neop: @@ -69068,6 +75358,8 @@ components: semantic: Disease predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-DISRUPTS-neop-rev: @@ -69090,6 +75382,8 @@ components: semantic: BiologicalEntity predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-COEXISTS_WITH-gngm-rev: @@ -69112,6 +75406,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' emod-COEXISTS_WITH-neop: @@ -69134,6 +75430,8 @@ components: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' emod-COEXISTS_WITH-neop-rev: @@ -69156,6 +75454,8 @@ components: semantic: BiologicalEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' elii-ASSOCIATED_WITH-sosy-rev: @@ -69178,6 +75478,8 @@ components: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' elii-COEXISTS_WITH-gngm-rev: @@ -69200,6 +75502,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' tisu-PART_OF-aggp-rev: @@ -69222,6 +75526,8 @@ components: semantic: GrossAnatomicalStructure predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' antb-DISRUPTS-celc-rev: @@ -69244,6 +75550,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-AFFECTS-celc-rev: @@ -69266,6 +75574,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' eico-PART_OF-celc-rev: @@ -69288,6 +75598,8 @@ components: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-TREATS-sosy-rev: @@ -69308,8 +75620,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch_umls-INTERACTS_WITH-aapp_ncbigene-rev: @@ -69332,6 +75646,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bact-CAUSES-comd: @@ -69354,6 +75670,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fngs-LOCATION_OF-imft: @@ -69376,6 +75694,8 @@ components: semantic: BiologicalEntity predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fngs-LOCATION_OF-imft-rev: @@ -69398,6 +75718,8 @@ components: semantic: Fungus predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb_umls-INHIBITS-gngm_ncbigene-rev: @@ -69420,6 +75742,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -69446,6 +75770,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsf-PRODUCES-imft-rev: @@ -69468,6 +75794,8 @@ components: semantic: PhysiologicalProcess predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd-AFFECTS-patf-rev: @@ -69490,6 +75818,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-COEXISTS_WITH-gngm-rev: @@ -69512,6 +75842,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-AUGMENTS-moft: @@ -69534,6 +75866,8 @@ components: semantic: MolecularActivity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -69560,6 +75894,8 @@ components: semantic: BiologicalEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -69586,6 +75922,8 @@ components: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' vita-TREATS-dsyn-rev: @@ -69606,8 +75944,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bodm-INTERACTS_WITH-irda: @@ -69630,6 +75970,8 @@ components: semantic: DiagnosticAid predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bodm-INTERACTS_WITH-irda-rev: @@ -69652,6 +75994,8 @@ components: semantic: Device predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-AUGMENTS-fndg-rev: @@ -69674,6 +76018,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -69700,6 +76046,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-COEXISTS_WITH-eico: @@ -69722,6 +76070,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orgf-AFFECTS-fngs: @@ -69744,6 +76094,8 @@ components: semantic: Fungus predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orgf-AFFECTS-fngs-rev: @@ -69766,6 +76118,8 @@ components: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-STIMULATES-gngm: @@ -69788,6 +76142,8 @@ components: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -69814,6 +76170,8 @@ components: semantic: Protein predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -69837,11 +76195,37 @@ components: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease - predicate: treats + semantic: PhenotypicFeature + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' + aapp-TREATS-anab-rev: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: object.umls + parameters: + fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Polypeptide + predicate: subject_of_treatment_application_or_study_for_treatment_by + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' elii-AFFECTS-comd-rev: - supportBatch: True useTemplating: True @@ -69862,6 +76246,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-PART_OF-virs-rev: @@ -69884,6 +76270,8 @@ components: semantic: Protein predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-STIMULATES-aapp: @@ -69906,6 +76294,8 @@ components: semantic: Polypeptide predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -69932,6 +76322,8 @@ components: semantic: BiologicalEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -69958,6 +76350,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -69984,6 +76378,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -70010,6 +76406,8 @@ components: semantic: Disease predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' anst-PART_OF-neop-rev: @@ -70032,6 +76430,8 @@ components: semantic: AnatomicalEntity predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-CONVERTS_TO-bacs-rev: @@ -70054,6 +76454,8 @@ components: semantic: SmallMolecule predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-AUGMENTS-comd-rev: @@ -70076,6 +76478,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -70102,6 +76506,8 @@ components: semantic: AnatomicalEntity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -70128,6 +76534,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -70154,6 +76562,8 @@ components: semantic: Cohort predicate: occurs_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' biof-PROCESS_OF-aggp-rev: @@ -70176,6 +76586,8 @@ components: semantic: Phenomenon predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd_umls-COEXISTS_WITH-gngm_ncbigene-rev: @@ -70198,6 +76610,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-STIMULATES-nsba_umls: @@ -70220,6 +76634,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -70246,6 +76662,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -70272,6 +76690,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -70298,6 +76718,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -70322,8 +76744,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt_umls-INTERACTS_WITH-gngm_ncbigene: @@ -70346,6 +76770,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' nsba-AUGMENTS-bpoc-rev: @@ -70368,6 +76794,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -70394,6 +76822,8 @@ components: semantic: Phenomenon predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-DISRUPTS-biof-rev: @@ -70416,6 +76846,8 @@ components: semantic: Polypeptide predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-COEXISTS_WITH-imft_umls: @@ -70438,6 +76870,8 @@ components: semantic: BiologicalEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-COEXISTS_WITH-imft_umls-rev: @@ -70460,6 +76894,8 @@ components: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' dsyn-COMPLICATES-inpo: @@ -70480,8 +76916,10 @@ components: outputs: - id: UMLS semantic: PathologicalProcess - predicate: exacerbates + predicate: exacerbates_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-COEXISTS_WITH-phsu: @@ -70504,6 +76942,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-AFFECTS-sosy_umls: @@ -70526,6 +76966,8 @@ components: semantic: PhenotypicFeature predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-AFFECTS-sosy_umls-rev: @@ -70548,6 +76990,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' clnd-TREATS-patf: @@ -70568,8 +77012,10 @@ components: outputs: - id: UMLS semantic: PathologicalProcess - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' clnd-TREATS-patf-rev: @@ -70590,8 +77036,10 @@ components: outputs: - id: UMLS semantic: Drug - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-PART_OF-emst: @@ -70614,6 +77062,8 @@ components: semantic: GrossAnatomicalStructure predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' strd-PREDISPOSES-dsyn-rev: @@ -70634,8 +77084,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-COEXISTS_WITH-nusq_umls: @@ -70658,6 +77110,8 @@ components: semantic: NucleicAcidEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-COEXISTS_WITH-nusq_umls-rev: @@ -70680,6 +77134,8 @@ components: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' food-CAUSES-comd: @@ -70702,6 +77158,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' lipd-ASSOCIATED_WITH-sosy-rev: @@ -70724,8 +77182,34 @@ components: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' + anab-COEXISTS_WITH-acab: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:acab AND + _exists_:object.umls AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Disease + predicate: coexists_with + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' imft-COEXISTS_WITH-gngm: - supportBatch: True useTemplating: True @@ -70746,6 +77230,8 @@ components: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-COEXISTS_WITH-gngm-rev: @@ -70768,6 +77254,8 @@ components: semantic: BiologicalEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' sosy-DIAGNOSES-acab: @@ -70790,6 +77278,8 @@ components: semantic: Disease predicate: diagnoses source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-COEXISTS_WITH-rcpt: @@ -70812,6 +77302,8 @@ components: semantic: Protein predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-COEXISTS_WITH-rcpt-rev: @@ -70834,6 +77326,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' emod-COEXISTS_WITH-dsyn: @@ -70856,6 +77350,8 @@ components: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' eico-CAUSES-dsyn-rev: @@ -70878,6 +77374,8 @@ components: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-COEXISTS_WITH-gngm-rev: @@ -70900,6 +77398,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orgf-AFFECTS-virs: @@ -70922,6 +77422,8 @@ components: semantic: Virus predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orgf-AFFECTS-virs-rev: @@ -70944,6 +77446,8 @@ components: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-INHIBITS-bacs: @@ -70966,6 +77470,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -70992,6 +77498,8 @@ components: semantic: BiologicalEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -71018,6 +77526,8 @@ components: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' dsyn-AFFECTS-fngs: @@ -71040,6 +77550,8 @@ components: semantic: Fungus predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-AFFECTS-fngs-rev: @@ -71062,6 +77574,8 @@ components: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' elii_umls-INHIBITS-gngm_ncbigene-rev: @@ -71084,6 +77598,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -71110,6 +77626,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' eico-AFFECTS-patf-rev: @@ -71132,6 +77650,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-DISRUPTS-patf-rev: @@ -71154,6 +77674,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-INTERACTS_WITH-imft-rev: @@ -71176,6 +77698,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-DISRUPTS-neop-rev: @@ -71198,6 +77722,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc_umls-LOCATION_OF-bacs_ncbigene: @@ -71220,6 +77746,8 @@ components: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' gngm-PREDISPOSES-comd: @@ -71240,8 +77768,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nsba-STIMULATES-aapp-rev: @@ -71264,6 +77794,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -71290,6 +77822,8 @@ components: semantic: GrossAnatomicalStructure predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' neop-PRODUCES-tisu-rev: @@ -71312,6 +77846,8 @@ components: semantic: Disease predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-PREDISPOSES-mobd_umls: @@ -71332,8 +77868,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orgf-PRODUCES-bdsu: @@ -71356,6 +77894,8 @@ components: semantic: AnatomicalEntity predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orgf-PRODUCES-bdsu-rev: @@ -71378,6 +77918,8 @@ components: semantic: PhysiologicalProcess predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' opco-AFFECTS-cell-rev: @@ -71400,6 +77942,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-COEXISTS_WITH-nusq_umls-rev: @@ -71422,6 +77966,8 @@ components: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' gngm-STIMULATES-hops: @@ -71444,6 +77990,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -71470,6 +78018,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' patf-AFFECTS-bact: @@ -71492,6 +78042,8 @@ components: semantic: Bacterium predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-AFFECTS-bact-rev: @@ -71514,6 +78066,8 @@ components: semantic: PathologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-COEXISTS_WITH-orch: @@ -71536,6 +78090,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-DISRUPTS-inpo-rev: @@ -71558,6 +78114,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' elii-PREDISPOSES-dsyn-rev: @@ -71578,8 +78136,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' food-CAUSES-mobd: @@ -71602,6 +78162,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' medd-CAUSES-anab: @@ -71621,11 +78183,37 @@ components: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' + medd-CAUSES-anab-rev: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: object.umls + parameters: + fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:medd AND _exists_:subject.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Device + predicate: caused_by + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' strd-PART_OF-fngs-rev: - supportBatch: True useTemplating: True @@ -71646,6 +78234,8 @@ components: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-AUGMENTS-biof-rev: @@ -71668,6 +78258,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -71694,6 +78286,8 @@ components: semantic: Gene predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PRODUCES-gngm-rev: @@ -71716,6 +78310,8 @@ components: semantic: Gene predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' diap-USES-diap: @@ -71738,6 +78334,8 @@ components: semantic: Procedure predicate: has_input source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' diap-USES-diap-rev: @@ -71760,6 +78358,8 @@ components: semantic: Procedure predicate: is_input_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-AUGMENTS-comd-rev: @@ -71782,6 +78382,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -71808,6 +78410,8 @@ components: semantic: PhenotypicFeature predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AFFECTS-sosy-rev: @@ -71830,6 +78434,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' plnt_umls-LOCATION_OF-gngm_ncbigene: @@ -71852,6 +78458,8 @@ components: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' horm-DISRUPTS-cell-rev: @@ -71874,6 +78482,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-AUGMENTS-patf-rev: @@ -71896,6 +78506,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -71922,6 +78534,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-STIMULATES-elii: @@ -71944,6 +78558,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -71970,6 +78586,8 @@ components: semantic: Gene predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' gngm_ncbigene-INTERACTS_WITH-eico_umls: @@ -71992,6 +78610,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nsba-DISRUPTS-moft-rev: @@ -72014,6 +78634,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-COEXISTS_WITH-strd: @@ -72036,6 +78658,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' eehu-CAUSES-patf: @@ -72058,6 +78682,8 @@ components: semantic: PathologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' eehu-CAUSES-patf-rev: @@ -72080,6 +78706,8 @@ components: semantic: Phenomenon predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' emst-LOCATION_OF-bact-rev: @@ -72102,6 +78730,8 @@ components: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-DISRUPTS-celc_umls: @@ -72124,6 +78754,8 @@ components: semantic: CellularComponent predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-DISRUPTS-celc_umls-rev: @@ -72146,6 +78778,8 @@ components: semantic: Gene predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' medd-CAUSES-acab: @@ -72168,6 +78802,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-COMPLICATES-neop: @@ -72188,8 +78824,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: exacerbates + predicate: exacerbates_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-AFFECTS-fngs: @@ -72212,6 +78850,8 @@ components: semantic: Fungus predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-AFFECTS-fngs-rev: @@ -72234,6 +78874,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' enzy-AFFECTS-celf-rev: @@ -72256,6 +78898,8 @@ components: semantic: Protein predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' patf-PRODUCES-bdsu: @@ -72278,6 +78922,8 @@ components: semantic: AnatomicalEntity predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-PRODUCES-bdsu-rev: @@ -72300,6 +78946,8 @@ components: semantic: PathologicalProcess predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-ASSOCIATED_WITH-inpo: @@ -72322,6 +78970,8 @@ components: semantic: PathologicalProcess predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-INHIBITS-nsba_umls: @@ -72344,6 +78994,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -72370,6 +79022,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd_umls-INTERACTS_WITH-aapp_ncbigene-rev: @@ -72392,6 +79046,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' patf-PRECEDES-comd: @@ -72414,6 +79070,8 @@ components: semantic: Disease predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-STIMULATES-strd: @@ -72436,6 +79094,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -72462,6 +79122,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-DISRUPTS-sosy-rev: @@ -72484,6 +79146,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celf_umls-PRODUCES-bacs_ncbigene: @@ -72506,6 +79170,8 @@ components: semantic: Gene predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' celf_umls-PRODUCES-bacs_ncbigene-rev: @@ -72528,6 +79194,8 @@ components: semantic: PhysiologicalProcess predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PRODUCES-eico: @@ -72550,6 +79218,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-COEXISTS_WITH-imft_umls-rev: @@ -72572,6 +79242,8 @@ components: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' ortf-PRODUCES-imft-rev: @@ -72594,6 +79266,8 @@ components: semantic: PhysiologicalProcess predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nnon-AUGMENTS-neop-rev: @@ -72616,6 +79290,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -72642,6 +79318,8 @@ components: semantic: PhysiologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-COEXISTS_WITH-gngm: @@ -72664,6 +79342,8 @@ components: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-COEXISTS_WITH-gngm-rev: @@ -72686,6 +79366,8 @@ components: semantic: Protein predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-INTERACTS_WITH-gngm-rev: @@ -72708,6 +79390,32 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' + acab-COEXISTS_WITH-anab-rev: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: object.umls + parameters: + fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:acab + AND _exists_:subject.umls AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Disease + predicate: coexists_with + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-PRODUCES-aapp_ncbigene-rev: @@ -72730,6 +79438,8 @@ components: semantic: Gene predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' opco-DISRUPTS-orgf-rev: @@ -72752,6 +79462,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-DISRUPTS-comd_umls: @@ -72774,6 +79486,8 @@ components: semantic: Disease predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inch-PREDISPOSES-inpo-rev: @@ -72794,10 +79508,36 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' + anab-PART_OF-fngs: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:fngs AND _exists_:object.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Fungus + predicate: part_of + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' anab-PART_OF-fngs-rev: - supportBatch: True useTemplating: True @@ -72815,9 +79555,11 @@ components: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-DISRUPTS-dsyn: @@ -72840,6 +79582,8 @@ components: semantic: Disease predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inch-AUGMENTS-celc-rev: @@ -72862,6 +79606,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -72888,6 +79634,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -72914,6 +79662,8 @@ components: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' rcpt-PART_OF-tisu: @@ -72936,6 +79686,8 @@ components: semantic: GrossAnatomicalStructure predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-PRODUCES-lipd: @@ -72958,6 +79710,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-PRODUCES-horm: @@ -72980,6 +79734,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-AFFECTS-sosy_umls-rev: @@ -73002,6 +79758,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' bacs_ncbigene-PREVENTS-dsyn_umls-rev: @@ -73022,8 +79780,10 @@ components: outputs: - id: NCBIGene semantic: Gene - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' nsba-AUGMENTS-patf-rev: @@ -73046,6 +79806,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -73072,6 +79834,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-AFFECTS-acab: @@ -73094,6 +79858,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' antb-AUGMENTS-comd-rev: @@ -73116,6 +79882,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -73142,6 +79910,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -73168,6 +79938,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-INTERACTS_WITH-bodm-rev: @@ -73190,6 +79962,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu_ncbigene-TREATS-patf_umls-rev: @@ -73210,8 +79984,10 @@ components: outputs: - id: NCBIGene semantic: Gene - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' bdsu-CAUSES-comd: @@ -73234,6 +80010,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-CAUSES-acab_umls: @@ -73256,6 +80034,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' hops-DISRUPTS-cell-rev: @@ -73278,6 +80058,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-INTERACTS_WITH-orch: @@ -73300,6 +80082,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-ADMINISTERED_TO-cell_umls-rev: @@ -73322,6 +80106,8 @@ components: semantic: Gene predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' strd-DISRUPTS-orgf-rev: @@ -73344,6 +80130,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd_umls-STIMULATES-gngm_ncbigene-rev: @@ -73366,6 +80154,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -73392,6 +80182,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-CAUSES-inpo: @@ -73414,6 +80206,8 @@ components: semantic: PathologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nsba-INHIBITS-aapp-rev: @@ -73436,6 +80230,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -73462,6 +80258,8 @@ components: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' comd-MANIFESTATION_OF-celf: @@ -73484,6 +80282,8 @@ components: semantic: PhysiologicalProcess predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' comd-MANIFESTATION_OF-celf-rev: @@ -73506,6 +80306,8 @@ components: semantic: Disease predicate: has_manifestation source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' comd-PRODUCES-imft-rev: @@ -73528,8 +80330,34 @@ components: semantic: Disease predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' + anab-AFFECTS-ortf: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:ortf AND _exists_:object.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: PhysiologicalProcess + predicate: affects + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-INTERACTS_WITH-carb: - supportBatch: True useTemplating: True @@ -73550,6 +80378,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' eico-CONVERTS_TO-eico: @@ -73572,6 +80402,8 @@ components: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PRODUCES-strd: @@ -73594,6 +80426,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-PREDISPOSES-patf: @@ -73614,8 +80448,10 @@ components: outputs: - id: UMLS semantic: PathologicalProcess - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-PREDISPOSES-patf-rev: @@ -73636,8 +80472,10 @@ components: outputs: - id: UMLS semantic: BiologicalEntity - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' tisu-PRODUCES-bdsu-rev: @@ -73660,6 +80498,8 @@ components: semantic: GrossAnatomicalStructure predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-ADMINISTERED_TO-aggp: @@ -73682,6 +80522,8 @@ components: semantic: Cohort predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-ADMINISTERED_TO-aggp-rev: @@ -73704,6 +80546,8 @@ components: semantic: BiologicalEntity predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-DISRUPTS-sosy-rev: @@ -73726,6 +80570,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-INTERACTS_WITH-strd_umls: @@ -73748,6 +80594,32 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' + anab-COEXISTS_WITH-mobd: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:mobd AND + _exists_:object.umls AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Disease + predicate: coexists_with + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-PRODUCES-bdsu_umls: @@ -73770,6 +80642,8 @@ components: semantic: AnatomicalEntity predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-PRODUCES-bdsu_umls-rev: @@ -73792,6 +80666,8 @@ components: semantic: Gene predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' aapp-INHIBITS-strd: @@ -73814,6 +80690,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -73840,6 +80718,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -73866,6 +80746,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -73892,6 +80774,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-ASSOCIATED_WITH-inpo: @@ -73914,6 +80798,8 @@ components: semantic: PathologicalProcess predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-DISRUPTS-tisu_umls: @@ -73936,6 +80822,8 @@ components: semantic: GrossAnatomicalStructure predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-DISRUPTS-cell: @@ -73958,6 +80846,8 @@ components: semantic: Cell predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-DISRUPTS-cell-rev: @@ -73980,6 +80870,8 @@ components: semantic: BiologicalEntity predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-CONVERTS_TO-imft: @@ -74002,6 +80894,8 @@ components: semantic: BiologicalEntity predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-CONVERTS_TO-imft-rev: @@ -74024,6 +80918,8 @@ components: semantic: Polypeptide predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' fndg-COEXISTS_WITH-cgab: @@ -74046,6 +80942,8 @@ components: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' antb-AUGMENTS-ortf-rev: @@ -74068,6 +80966,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -74094,6 +80994,8 @@ components: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fngs-LOCATION_OF-gngm-rev: @@ -74116,6 +81018,8 @@ components: semantic: Fungus predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' eehu-CAUSES-inpo: @@ -74138,6 +81042,8 @@ components: semantic: PathologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nnon-AFFECTS-tisu-rev: @@ -74160,6 +81066,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-AFFECTS-bpoc: @@ -74182,6 +81090,8 @@ components: semantic: GrossAnatomicalStructure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-AFFECTS-bpoc-rev: @@ -74204,6 +81114,8 @@ components: semantic: BiologicalEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' neop-AFFECTS-bact-rev: @@ -74226,6 +81138,8 @@ components: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-AUGMENTS-patf-rev: @@ -74248,6 +81162,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -74274,6 +81190,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-DISRUPTS-bpoc-rev: @@ -74296,6 +81214,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-DISRUPTS-neop-rev: @@ -74318,6 +81238,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' comd-PROCESS_OF-aggp-rev: @@ -74340,6 +81262,8 @@ components: semantic: Disease predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-same_as-bacs: @@ -74362,6 +81286,8 @@ components: semantic: SmallMolecule predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-same_as-bacs-rev: @@ -74384,6 +81310,8 @@ components: semantic: SmallMolecule predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bodm-INTERACTS_WITH-antb: @@ -74406,6 +81334,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' antb-INTERACTS_WITH-gngm-rev: @@ -74428,6 +81358,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsf-PRODUCES-enzy-rev: @@ -74450,6 +81382,8 @@ components: semantic: PhysiologicalProcess predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bact-LOCATION_OF-gngm: @@ -74472,6 +81406,8 @@ components: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bact-LOCATION_OF-gngm-rev: @@ -74494,6 +81430,8 @@ components: semantic: Bacterium predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-INHIBITS-aapp-rev: @@ -74516,6 +81454,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -74542,6 +81482,8 @@ components: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: @@ -74568,6 +81510,8 @@ components: semantic: BiologicalEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -74594,6 +81538,8 @@ components: semantic: PhenotypicFeature predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-ASSOCIATED_WITH-sosy-rev: @@ -74616,6 +81562,8 @@ components: semantic: NucleicAcidEntity predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-AFFECTS-biof-rev: @@ -74638,6 +81586,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-COEXISTS_WITH-elii: @@ -74660,6 +81610,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft_umls-COEXISTS_WITH-aapp_ncbigene: @@ -74682,6 +81634,8 @@ components: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' gngm_ncbigene-INTERACTS_WITH-rcpt_umls-rev: @@ -74704,6 +81658,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' comd-COEXISTS_WITH-sosy-rev: @@ -74726,6 +81682,8 @@ components: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' acab-LOCATION_OF-virs-rev: @@ -74748,6 +81706,8 @@ components: semantic: Disease predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-INTERACTS_WITH-gngm-rev: @@ -74770,6 +81730,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-AUGMENTS-neop-rev: @@ -74792,6 +81754,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -74818,6 +81782,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-PRECEDES-aapp: @@ -74840,6 +81806,8 @@ components: semantic: Polypeptide predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-PRECEDES-aapp-rev: @@ -74862,6 +81830,8 @@ components: semantic: Procedure predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-INHIBITS-aapp-rev: @@ -74884,6 +81854,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -74910,6 +81882,8 @@ components: semantic: MolecularActivity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-AFFECTS-moft-rev: @@ -74932,6 +81906,8 @@ components: semantic: Protein predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-PRECEDES-orch: @@ -74954,6 +81930,8 @@ components: semantic: SmallMolecule predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-PRECEDES-orch-rev: @@ -74976,6 +81954,8 @@ components: semantic: Procedure predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' opco-INTERACTS_WITH-aapp-rev: @@ -74998,6 +81978,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell-PART_OF-aggp: @@ -75020,6 +82002,8 @@ components: semantic: Cohort predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-PART_OF-aggp-rev: @@ -75042,6 +82026,8 @@ components: semantic: Cell predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' biof-AFFECTS-biof: @@ -75064,6 +82050,8 @@ components: semantic: Phenomenon predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' biof-AFFECTS-biof-rev: @@ -75086,6 +82074,8 @@ components: semantic: Phenomenon predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-DISRUPTS-comd: @@ -75108,6 +82098,8 @@ components: semantic: Disease predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' irda-COEXISTS_WITH-inch: @@ -75130,6 +82122,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' irda-COEXISTS_WITH-inch-rev: @@ -75152,6 +82146,8 @@ components: semantic: DiagnosticAid predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-CONVERTS_TO-bacs_umls: @@ -75174,6 +82170,8 @@ components: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-CONVERTS_TO-bacs_umls-rev: @@ -75196,6 +82194,8 @@ components: semantic: Gene predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' bdsu-CAUSES-acab: @@ -75218,6 +82218,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-CONVERTS_TO-nsba: @@ -75240,6 +82242,8 @@ components: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' horm-AUGMENTS-patf-rev: @@ -75262,6 +82266,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -75288,6 +82294,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -75314,6 +82322,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -75340,6 +82350,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nnon-TREATS-virs-rev: @@ -75360,8 +82372,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' elii-PREDISPOSES-inpo-rev: @@ -75382,8 +82396,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' neop-MANIFESTATION_OF-orgf-rev: @@ -75406,6 +82422,8 @@ components: semantic: Disease predicate: has_manifestation source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' opco-AUGMENTS-bpoc-rev: @@ -75428,6 +82446,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -75454,6 +82474,8 @@ components: semantic: SmallMolecule predicate: has_input source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' sosy-COEXISTS_WITH-comd: @@ -75476,6 +82498,8 @@ components: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-ADMINISTERED_TO-aggp: @@ -75498,6 +82522,8 @@ components: semantic: Cohort predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-ADMINISTERED_TO-aggp-rev: @@ -75520,6 +82546,8 @@ components: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-INHIBITS-imft: @@ -75542,6 +82570,8 @@ components: semantic: BiologicalEntity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -75568,6 +82598,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -75594,6 +82626,8 @@ components: semantic: Cell predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inpo-DISRUPTS-cell-rev: @@ -75616,6 +82650,8 @@ components: semantic: PathologicalProcess predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-INTERACTS_WITH-gngm: @@ -75638,6 +82674,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-INTERACTS_WITH-gngm-rev: @@ -75660,6 +82698,8 @@ components: semantic: Protein predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-USES-imft: @@ -75682,6 +82722,8 @@ components: semantic: BiologicalEntity predicate: has_input source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-USES-imft-rev: @@ -75704,6 +82746,8 @@ components: semantic: Procedure predicate: is_input_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-INTERACTS_WITH-horm: @@ -75726,6 +82770,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' carb-AFFECTS-celc-rev: @@ -75748,6 +82794,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' food-PREDISPOSES-mobd: @@ -75768,8 +82816,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AUGMENTS-dsyn: @@ -75792,6 +82842,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -75818,6 +82870,8 @@ components: semantic: PathologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -75844,6 +82898,8 @@ components: semantic: BiologicalEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -75870,6 +82926,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -75894,8 +82952,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nsba-AUGMENTS-sosy-rev: @@ -75918,6 +82978,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -75944,6 +83006,8 @@ components: semantic: Disease predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bodm-INTERACTS_WITH-nnon: @@ -75966,6 +83030,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' lipd-DISRUPTS-cell-rev: @@ -75988,6 +83054,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-DISRUPTS-mobd: @@ -76010,6 +83078,8 @@ components: semantic: Disease predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-COEXISTS_WITH-hops_umls: @@ -76032,6 +83102,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' carb-DISRUPTS-neop-rev: @@ -76054,6 +83126,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' opco-AFFECTS-neop-rev: @@ -76076,6 +83150,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-AUGMENTS-biof-rev: @@ -76098,6 +83174,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -76124,6 +83202,8 @@ components: semantic: NucleicAcidEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-COEXISTS_WITH-nusq-rev: @@ -76146,6 +83226,8 @@ components: semantic: Protein predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-COEXISTS_WITH-imft-rev: @@ -76168,6 +83250,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' antb-DISRUPTS-patf-rev: @@ -76190,6 +83274,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm_ncbigene-TREATS-mobd_umls: @@ -76210,8 +83296,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-INHIBITS-enzy: @@ -76234,6 +83322,8 @@ components: semantic: Protein predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -76260,6 +83350,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -76286,6 +83378,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' antb-DISRUPTS-moft-rev: @@ -76308,6 +83402,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-INTERACTS_WITH-lipd: @@ -76330,6 +83426,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-CONVERTS_TO-lipd: @@ -76352,6 +83450,8 @@ components: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inpo-DISRUPTS-phsf: @@ -76374,6 +83474,8 @@ components: semantic: PhysiologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' hops-CONVERTS_TO-orch-rev: @@ -76396,6 +83498,8 @@ components: semantic: SmallMolecule predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orgf-PRODUCES-aapp-rev: @@ -76418,6 +83522,8 @@ components: semantic: PhysiologicalProcess predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nnon-DISRUPTS-cell-rev: @@ -76440,6 +83546,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-PREDISPOSES-comd_umls: @@ -76460,8 +83568,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AUGMENTS-cell: @@ -76484,6 +83594,8 @@ components: semantic: Cell predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -76510,6 +83622,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -76536,6 +83650,8 @@ components: semantic: Protein predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -76562,6 +83678,8 @@ components: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -76588,6 +83706,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -76611,9 +83731,11 @@ components: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-PART_OF-anab-rev: @@ -76621,7 +83743,7 @@ components: useTemplating: True inputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature requestBody: body: q: '{{ queryInputs }}' @@ -76636,6 +83758,8 @@ components: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' biof-AFFECTS-mobd: @@ -76658,6 +83782,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsf_umls-PRODUCES-bacs_ncbigene-rev: @@ -76680,6 +83806,8 @@ components: semantic: PhysiologicalProcess predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-CONVERTS_TO-inch: @@ -76702,6 +83830,8 @@ components: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' eico_umls-INHIBITS-gngm_ncbigene-rev: @@ -76724,6 +83854,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -76748,8 +83880,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-AFFECTS-celc-rev: @@ -76772,6 +83906,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-COEXISTS_WITH-gngm-rev: @@ -76794,6 +83930,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PART_OF-aggp: @@ -76816,6 +83954,8 @@ components: semantic: Cohort predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PART_OF-aggp-rev: @@ -76838,6 +83978,8 @@ components: semantic: Polypeptide predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm_ncbigene-PREVENTS-dsyn_umls-rev: @@ -76858,8 +84000,10 @@ components: outputs: - id: NCBIGene semantic: Gene - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' orch-DISRUPTS-mobd: @@ -76882,6 +84026,8 @@ components: semantic: Disease predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-INHIBITS-phsu_umls: @@ -76904,6 +84050,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -76930,6 +84078,32 @@ components: semantic: SmallMolecule predicate: has_input source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' + anab-LOCATION_OF-bact: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:bact AND + _exists_:object.umls AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Bacterium + predicate: location_of + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' anab-LOCATION_OF-bact-rev: @@ -76949,9 +84123,11 @@ components: _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell-PRODUCES-carb: @@ -76974,6 +84150,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' diap_umls-USES-irda_ncbigene: @@ -76996,6 +84174,8 @@ components: semantic: Gene predicate: has_input source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' orch-COEXISTS_WITH-opco: @@ -77018,6 +84198,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bodm-INTERACTS_WITH-lipd: @@ -77040,6 +84222,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-CONVERTS_TO-carb: @@ -77062,6 +84246,8 @@ components: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-PRODUCES-nnon: @@ -77084,6 +84270,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' hops-AFFECTS-biof-rev: @@ -77106,6 +84294,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bodm-INTERACTS_WITH-carb: @@ -77128,6 +84318,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orga-MANIFESTATION_OF-orgf: @@ -77150,6 +84342,8 @@ components: semantic: PhysiologicalProcess predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orga-MANIFESTATION_OF-orgf-rev: @@ -77172,6 +84366,8 @@ components: semantic: OrganismAttribute predicate: has_manifestation source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-INTERACTS_WITH-phsu: @@ -77194,6 +84390,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-CONVERTS_TO-bacs: @@ -77216,6 +84414,8 @@ components: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-CONVERTS_TO-bacs-rev: @@ -77238,6 +84438,8 @@ components: semantic: Gene predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-ASSOCIATED_WITH-sosy-rev: @@ -77260,6 +84462,8 @@ components: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PRODUCES-horm: @@ -77282,6 +84486,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' antb-INTERACTS_WITH-bodm-rev: @@ -77304,6 +84510,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-STIMULATES-carb_umls: @@ -77326,6 +84534,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -77352,6 +84562,8 @@ components: semantic: Gene predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' imft-COEXISTS_WITH-lipd: @@ -77374,6 +84586,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' horm-INTERACTS_WITH-rcpt-rev: @@ -77396,6 +84610,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-CONVERTS_TO-nusq: @@ -77418,6 +84634,8 @@ components: semantic: NucleicAcidEntity predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-CONVERTS_TO-nusq-rev: @@ -77440,6 +84658,8 @@ components: semantic: SmallMolecule predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-INTERACTS_WITH-imft-rev: @@ -77462,6 +84682,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' virs-LOCATION_OF-carb: @@ -77484,6 +84706,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inch-CONVERTS_TO-inch: @@ -77506,6 +84730,8 @@ components: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inch-CONVERTS_TO-inch-rev: @@ -77528,6 +84754,8 @@ components: semantic: SmallMolecule predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-DISRUPTS-patf-rev: @@ -77550,6 +84778,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' opco-AUGMENTS-cell-rev: @@ -77572,6 +84802,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -77598,8 +84830,34 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' + anab-PART_OF-aggp: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:aggp AND _exists_:object.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Cohort + predicate: part_of + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' anab-PART_OF-aggp-rev: - supportBatch: True useTemplating: True @@ -77617,9 +84875,11 @@ components: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-STIMULATES-imft_umls: @@ -77642,6 +84902,8 @@ components: semantic: BiologicalEntity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -77668,6 +84930,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -77694,6 +84958,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -77720,6 +84986,8 @@ components: semantic: Disease predicate: has_manifestation source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-AUGMENTS-acab_umls: @@ -77742,6 +85010,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -77768,6 +85038,8 @@ components: semantic: DiseaseOrPhenotypicFeature predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -77794,6 +85066,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -77820,6 +85094,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-INTERACTS_WITH-bodm-rev: @@ -77842,6 +85118,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-INHIBITS-gngm: @@ -77864,6 +85142,8 @@ components: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -77890,6 +85170,8 @@ components: semantic: NucleicAcidEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -77916,6 +85198,8 @@ components: semantic: BiologicalEntity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -77942,6 +85226,8 @@ components: semantic: BiologicalEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -77968,6 +85254,8 @@ components: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' comd-MANIFESTATION_OF-comd: @@ -77990,6 +85278,8 @@ components: semantic: Disease predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' comd-MANIFESTATION_OF-comd-rev: @@ -78012,6 +85302,8 @@ components: semantic: Disease predicate: has_manifestation source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-STIMULATES-imft-rev: @@ -78034,6 +85326,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -78060,6 +85354,8 @@ components: semantic: Procedure predicate: has_input source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-USES-topp-rev: @@ -78082,6 +85378,8 @@ components: semantic: Procedure predicate: is_input_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-INTERACTS_WITH-enzy: @@ -78104,6 +85402,8 @@ components: semantic: Protein predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bact_umls-LOCATION_OF-gngm_ncbigene: @@ -78126,6 +85426,8 @@ components: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' elii-STIMULATES-aapp-rev: @@ -78148,6 +85450,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -78174,6 +85478,8 @@ components: semantic: PathologicalProcess predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsf_umls-ASSOCIATED_WITH-phsu_ncbigene: @@ -78196,6 +85502,8 @@ components: semantic: Gene predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' phsf_umls-ASSOCIATED_WITH-phsu_ncbigene-rev: @@ -78218,6 +85526,8 @@ components: semantic: PhysiologicalProcess predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-STIMULATES-strd_umls: @@ -78240,6 +85550,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -78266,6 +85578,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' irda-INTERACTS_WITH-hops: @@ -78288,6 +85602,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-ADMINISTERED_TO-aggp-rev: @@ -78310,6 +85626,8 @@ components: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-CONVERTS_TO-gngm_umls-rev: @@ -78332,6 +85650,8 @@ components: semantic: Gene predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' lipd-INTERACTS_WITH-bodm-rev: @@ -78354,6 +85674,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-STIMULATES-hops_umls: @@ -78376,6 +85698,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -78402,6 +85726,8 @@ components: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-STIMULATES-imft: @@ -78424,6 +85750,8 @@ components: semantic: BiologicalEntity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -78450,6 +85778,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -78476,6 +85806,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -78502,6 +85834,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' elii-AFFECTS-sosy-rev: @@ -78524,6 +85858,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' eico-COEXISTS_WITH-aapp-rev: @@ -78546,6 +85882,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-PREDISPOSES-sosy: @@ -78566,8 +85904,10 @@ components: outputs: - id: UMLS semantic: PhenotypicFeature - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-PREDISPOSES-sosy-rev: @@ -78588,8 +85928,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' patf-COEXISTS_WITH-emod-rev: @@ -78612,6 +85954,8 @@ components: semantic: PathologicalProcess predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-AUGMENTS-cell-rev: @@ -78634,6 +85978,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -78660,6 +86006,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PRODUCES-bdsu: @@ -78682,6 +86030,8 @@ components: semantic: AnatomicalEntity predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PRODUCES-bdsu-rev: @@ -78704,6 +86054,8 @@ components: semantic: Polypeptide predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' mobd-MANIFESTATION_OF-mobd: @@ -78726,6 +86078,8 @@ components: semantic: Disease predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' food-CAUSES-acab: @@ -78748,6 +86102,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-AFFECTS-anst: @@ -78770,6 +86126,8 @@ components: semantic: AnatomicalEntity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-AFFECTS-anst-rev: @@ -78792,6 +86150,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-COEXISTS_WITH-imft-rev: @@ -78814,6 +86174,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-STIMULATES-phsu: @@ -78836,6 +86198,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -78862,6 +86226,8 @@ components: semantic: NucleicAcidEntity predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-INTERACTS_WITH-nusq_umls-rev: @@ -78884,6 +86250,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' phsf-AFFECTS-bact-rev: @@ -78906,6 +86274,8 @@ components: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' enzy-INTERACTS_WITH-bacs-rev: @@ -78928,6 +86298,8 @@ components: semantic: Protein predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orgf_umls-PRODUCES-bacs_ncbigene-rev: @@ -78950,6 +86322,8 @@ components: semantic: PhysiologicalProcess predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' elii-CONVERTS_TO-bacs-rev: @@ -78972,6 +86346,8 @@ components: semantic: SmallMolecule predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' neop-PRODUCES-gngm: @@ -78994,6 +86370,8 @@ components: semantic: Gene predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' neop-PRODUCES-gngm-rev: @@ -79016,6 +86394,8 @@ components: semantic: Disease predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celf_umls-PRODUCES-imft_ncbigene: @@ -79038,6 +86418,8 @@ components: semantic: Gene predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' nnon-AUGMENTS-biof-rev: @@ -79060,6 +86442,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -79086,6 +86470,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-CAUSES-neop: @@ -79108,6 +86494,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' opco-INTERACTS_WITH-bacs-rev: @@ -79130,6 +86518,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-CONVERTS_TO-hops: @@ -79152,6 +86542,8 @@ components: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' lbtr-PREDISPOSES-neop: @@ -79172,8 +86564,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' medd-same_as-medd: @@ -79196,6 +86590,8 @@ components: semantic: Device predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' medd-same_as-medd-rev: @@ -79218,6 +86614,8 @@ components: semantic: Device predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orga-MANIFESTATION_OF-celf: @@ -79240,6 +86638,8 @@ components: semantic: PhysiologicalProcess predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' strd-PREVENTS-dsyn-rev: @@ -79260,8 +86660,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celf_umls-PRODUCES-enzy_ncbigene: @@ -79284,6 +86686,8 @@ components: semantic: Gene predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' bacs-INHIBITS-nusq: @@ -79306,6 +86710,8 @@ components: semantic: NucleicAcidEntity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -79332,6 +86738,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -79358,6 +86766,8 @@ components: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-LOCATION_OF-irda: @@ -79380,6 +86790,8 @@ components: semantic: DiagnosticAid predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-LOCATION_OF-irda-rev: @@ -79402,6 +86814,8 @@ components: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-PRODUCES-lipd_umls: @@ -79424,6 +86838,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' clnd-TREATS-inpo: @@ -79444,8 +86860,10 @@ components: outputs: - id: UMLS semantic: PathologicalProcess - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-INTERACTS_WITH-rcpt: @@ -79468,6 +86886,8 @@ components: semantic: Protein predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-INTERACTS_WITH-rcpt-rev: @@ -79490,6 +86910,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-TREATS-sosy: @@ -79510,32 +86932,12 @@ components: outputs: - id: UMLS semantic: PhenotypicFeature - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' - aapp-TREATS-sosy-rev: - - supportBatch: True - useTemplating: True - inputs: - - id: UMLS - semantic: PhenotypicFeature - requestBody: - body: - q: '{{ queryInputs }}' - scopes: object.umls - parameters: - fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name - size: 1000 - filter: predicate:TREATS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls - AND pmid_count:>3 - outputs: - - id: UMLS - semantic: Polypeptide - predicate: treated_by - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-CONVERTS_TO-aapp: - supportBatch: True useTemplating: True @@ -79556,6 +86958,8 @@ components: semantic: Polypeptide predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-CONVERTS_TO-aapp-rev: @@ -79578,6 +86982,8 @@ components: semantic: Polypeptide predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd-AFFECTS-cell-rev: @@ -79600,6 +87006,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nsba-AUGMENTS-mobd-rev: @@ -79622,6 +87030,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -79648,6 +87058,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -79674,6 +87086,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' lipd-INTERACTS_WITH-irda-rev: @@ -79696,6 +87110,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' irda-INTERACTS_WITH-antb: @@ -79718,6 +87134,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cgab-MANIFESTATION_OF-dsyn-rev: @@ -79740,6 +87158,8 @@ components: semantic: Disease predicate: has_manifestation source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celc-LOCATION_OF-horm: @@ -79762,6 +87182,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' horm-DISRUPTS-bpoc-rev: @@ -79784,6 +87206,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-INTERACTS_WITH-nusq_umls-rev: @@ -79806,6 +87230,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' antb-AFFECTS-gngm: @@ -79828,6 +87254,8 @@ components: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' antb-AFFECTS-gngm-rev: @@ -79850,6 +87278,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' elii-INTERACTS_WITH-gngm-rev: @@ -79872,6 +87302,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb_umls-COEXISTS_WITH-gngm_ncbigene-rev: @@ -79894,6 +87326,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-PREVENTS-patf-rev: @@ -79914,8 +87348,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' antb-STIMULATES-aapp-rev: @@ -79938,6 +87374,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -79964,6 +87402,8 @@ components: semantic: Gene predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' enzy-PART_OF-tisu-rev: @@ -79986,6 +87426,8 @@ components: semantic: Protein predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-PRODUCES-phsu: @@ -80008,6 +87450,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsf-CAUSES-moft: @@ -80030,6 +87474,8 @@ components: semantic: MolecularActivity predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsf-CAUSES-moft-rev: @@ -80052,6 +87498,8 @@ components: semantic: PhysiologicalProcess predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' eico-PREDISPOSES-comd-rev: @@ -80072,8 +87520,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' mobd-AFFECTS-biof-rev: @@ -80096,6 +87546,8 @@ components: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-COEXISTS_WITH-lipd: @@ -80118,6 +87570,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' irda-INTERACTS_WITH-carb: @@ -80140,6 +87594,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' strd_umls-INHIBITS-gngm_ncbigene-rev: @@ -80162,6 +87618,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -80188,6 +87646,8 @@ components: semantic: Protein predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-PRODUCES-enzy-rev: @@ -80210,6 +87670,8 @@ components: semantic: PathologicalProcess predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-INTERACTS_WITH-nnon: @@ -80232,6 +87694,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-STIMULATES-cell: @@ -80254,6 +87718,8 @@ components: semantic: Cell predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -80280,6 +87746,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -80306,6 +87774,8 @@ components: semantic: Gene predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' neop-PART_OF-bact-rev: @@ -80328,6 +87798,8 @@ components: semantic: Disease predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' eico_umls-INTERACTS_WITH-gngm_ncbigene-rev: @@ -80350,6 +87822,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celc-PRODUCES-lipd: @@ -80372,6 +87846,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' elii-TREATS-dsyn-rev: @@ -80392,8 +87868,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-STIMULATES-inch: @@ -80416,6 +87894,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -80440,8 +87920,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-INTERACTS_WITH-elii: @@ -80464,6 +87946,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nnon-COEXISTS_WITH-phsu-rev: @@ -80486,6 +87970,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' opco-DISRUPTS-neop-rev: @@ -80508,6 +87994,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-INTERACTS_WITH-gngm-rev: @@ -80530,6 +88018,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-PREDISPOSES-patf-rev: @@ -80550,8 +88040,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-TREATS-patf-rev: @@ -80572,8 +88064,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-AFFECTS-anab: @@ -80593,9 +88087,11 @@ components: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' lipd-INTERACTS_WITH-imft-rev: @@ -80618,6 +88114,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-PART_OF-aapp_ncbigene-rev: @@ -80640,6 +88138,8 @@ components: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' gngm_ncbigene-AFFECTS-fndg_umls-rev: @@ -80662,6 +88162,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' sosy-MANIFESTATION_OF-neop: @@ -80684,6 +88186,8 @@ components: semantic: Disease predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' sosy-MANIFESTATION_OF-neop-rev: @@ -80706,6 +88210,8 @@ components: semantic: PhenotypicFeature predicate: has_manifestation source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-PART_OF-anst_umls: @@ -80728,6 +88234,8 @@ components: semantic: AnatomicalEntity predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-AUGMENTS-mobd_umls: @@ -80750,6 +88258,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -80776,6 +88286,8 @@ components: semantic: BiologicalEntity predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' ortf-PRODUCES-bdsu-rev: @@ -80798,6 +88310,8 @@ components: semantic: PhysiologicalProcess predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-COEXISTS_WITH-inch: @@ -80820,6 +88334,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' food-AFFECTS-mobd: @@ -80842,6 +88358,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-STIMULATES-moft-rev: @@ -80864,12 +88382,38 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased + anab-AFFECTS-celf: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:celf AND _exists_:object.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: PhysiologicalProcess + predicate: affects + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-COEXISTS_WITH-eico: - supportBatch: True useTemplating: True @@ -80890,6 +88434,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bact-LOCATION_OF-rcpt: @@ -80912,6 +88458,8 @@ components: semantic: Protein predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bact-LOCATION_OF-rcpt-rev: @@ -80934,6 +88482,8 @@ components: semantic: Bacterium predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-AFFECTS-fndg-rev: @@ -80956,6 +88506,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-INHIBITS-imft-rev: @@ -80978,6 +88530,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -81004,6 +88558,8 @@ components: semantic: BiologicalEntity predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' acab-LOCATION_OF-emod-rev: @@ -81026,6 +88582,8 @@ components: semantic: Disease predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-INTERACTS_WITH-nsba: @@ -81048,6 +88606,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-PRODUCES-strd: @@ -81070,6 +88630,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' mobd-PRODUCES-bacs-rev: @@ -81092,6 +88654,8 @@ components: semantic: Disease predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' eehu-CAUSES-neop: @@ -81114,6 +88678,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AUGMENTS-moft: @@ -81136,6 +88702,8 @@ components: semantic: MolecularActivity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -81162,6 +88730,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -81188,6 +88758,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd-AUGMENTS-celc-rev: @@ -81210,6 +88782,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -81236,6 +88810,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -81262,6 +88838,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-USES-horm: @@ -81284,6 +88862,8 @@ components: semantic: SmallMolecule predicate: has_input source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PREVENTS-anab: @@ -81303,11 +88883,37 @@ components: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease - predicate: prevents + semantic: PhenotypicFeature + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' + aapp-PREVENTS-anab-rev: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: object.umls + parameters: + fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:PREVENTS AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Polypeptide + predicate: condition_prevented_by + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' diap-USES-clnd-rev: - supportBatch: True useTemplating: True @@ -81328,6 +88934,8 @@ components: semantic: Procedure predicate: is_input_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' neop-CAUSES-orgf-rev: @@ -81350,6 +88958,8 @@ components: semantic: Disease predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celc-LOCATION_OF-emod: @@ -81372,6 +88982,8 @@ components: semantic: BiologicalEntity predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-LOCATION_OF-emod-rev: @@ -81394,6 +89006,8 @@ components: semantic: CellularComponent predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-TREATS-inpo: @@ -81414,8 +89028,10 @@ components: outputs: - id: UMLS semantic: PathologicalProcess - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' lipd-AFFECTS-biof-rev: @@ -81438,6 +89054,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-INTERACTS_WITH-irda-rev: @@ -81460,6 +89078,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-DISRUPTS-patf-rev: @@ -81482,6 +89102,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' anst_umls-LOCATION_OF-aapp_ncbigene-rev: @@ -81504,6 +89126,8 @@ components: semantic: AnatomicalEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-DISRUPTS-phsf: @@ -81526,6 +89150,8 @@ components: semantic: PhysiologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-PART_OF-aggp_umls: @@ -81548,6 +89174,8 @@ components: semantic: Cohort predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-PART_OF-aggp_umls-rev: @@ -81570,6 +89198,8 @@ components: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' imft-PART_OF-blor: @@ -81592,6 +89222,8 @@ components: semantic: AnatomicalEntity predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-PART_OF-blor-rev: @@ -81614,6 +89246,8 @@ components: semantic: BiologicalEntity predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-AUGMENTS-comd-rev: @@ -81636,6 +89270,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -81662,6 +89298,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-INHIBITS-fndg: @@ -81684,6 +89322,8 @@ components: semantic: DiseaseOrPhenotypicFeature predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -81710,34 +89350,14 @@ components: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased - anab-COEXISTS_WITH-sosy-rev: - - supportBatch: True - useTemplating: True - inputs: - - id: UMLS - semantic: PhenotypicFeature - requestBody: - body: - q: '{{ queryInputs }}' - scopes: object.umls - parameters: - fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name - size: 1000 - filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:anab - AND _exists_:subject.umls AND pmid_count:>3 - outputs: - - id: UMLS - semantic: Disease - predicate: coexists_with - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' nsba-CONVERTS_TO-orch-rev: - supportBatch: True useTemplating: True @@ -81758,6 +89378,8 @@ components: semantic: SmallMolecule predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nnon-CAUSES-sosy-rev: @@ -81780,6 +89402,8 @@ components: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' elii-COEXISTS_WITH-imft-rev: @@ -81802,6 +89426,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' neop-AFFECTS-emod: @@ -81824,6 +89450,8 @@ components: semantic: BiologicalEntity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' neop-AFFECTS-emod-rev: @@ -81846,6 +89474,8 @@ components: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-DISRUPTS-bpoc: @@ -81868,6 +89498,8 @@ components: semantic: GrossAnatomicalStructure predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' opco-AUGMENTS-celf-rev: @@ -81890,6 +89522,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -81916,6 +89550,8 @@ components: semantic: Gene predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' elii-INTERACTS_WITH-rcpt-rev: @@ -81938,6 +89574,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bact-LOCATION_OF-enzy: @@ -81960,6 +89598,8 @@ components: semantic: Protein predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nnon-AUGMENTS-emst: @@ -81982,6 +89622,8 @@ components: semantic: GrossAnatomicalStructure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -82008,6 +89650,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cgab-LOCATION_OF-emod-rev: @@ -82030,6 +89674,8 @@ components: semantic: Disease predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd-PREVENTS-patf-rev: @@ -82050,8 +89696,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm_ncbigene-DISRUPTS-ortf_umls: @@ -82074,6 +89722,8 @@ components: semantic: PhysiologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' horm_ncbigene-DISRUPTS-ortf_umls-rev: @@ -82096,6 +89746,8 @@ components: semantic: Gene predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' gngm-AUGMENTS-acab: @@ -82118,6 +89770,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -82144,6 +89798,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' antb-COEXISTS_WITH-gngm-rev: @@ -82166,6 +89822,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-PREVENTS-anab: @@ -82185,9 +89843,11 @@ components: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease - predicate: prevents + semantic: PhenotypicFeature + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-COEXISTS_WITH-imft-rev: @@ -82210,6 +89870,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-STIMULATES-imft_umls-rev: @@ -82232,6 +89894,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -82258,6 +89922,8 @@ components: semantic: Protein predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-COEXISTS_WITH-rcpt-rev: @@ -82280,6 +89946,8 @@ components: semantic: NucleicAcidEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' anst-LOCATION_OF-virs: @@ -82302,6 +89970,8 @@ components: semantic: Virus predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' anst-LOCATION_OF-virs-rev: @@ -82324,6 +89994,8 @@ components: semantic: AnatomicalEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-ASSOCIATED_WITH-dsyn: @@ -82346,6 +90018,8 @@ components: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-ASSOCIATED_WITH-dsyn-rev: @@ -82368,6 +90042,8 @@ components: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-COEXISTS_WITH-carb: @@ -82390,6 +90066,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-DISRUPTS-patf: @@ -82412,6 +90090,8 @@ components: semantic: PathologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-DISRUPTS-patf-rev: @@ -82434,6 +90114,8 @@ components: semantic: BiologicalEntity predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' irda-COEXISTS_WITH-orch: @@ -82456,6 +90138,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' carb-COEXISTS_WITH-gngm-rev: @@ -82478,6 +90162,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-AUGMENTS-fndg-rev: @@ -82500,6 +90186,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -82526,6 +90214,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' eico-INHIBITS-aapp-rev: @@ -82548,12 +90238,38 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: decreased + sbst-CAUSES-acab: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: ChemicalEntity + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:acab AND _exists_:object.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Disease + predicate: causes + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' nnon-INHIBITS-gngm-rev: - supportBatch: True useTemplating: True @@ -82574,6 +90290,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -82598,8 +90316,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-STIMULATES-nusq: @@ -82622,6 +90342,8 @@ components: semantic: NucleicAcidEntity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -82648,12 +90370,38 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased + anab-PART_OF-bact: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:PART_OF AND object.semantic_type_abbreviation:bact AND _exists_:object.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Bacterium + predicate: part_of + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' anab-PART_OF-bact-rev: - supportBatch: True useTemplating: True @@ -82671,9 +90419,11 @@ components: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell-LOCATION_OF-antb: @@ -82696,6 +90446,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bact-LOCATION_OF-opco: @@ -82718,6 +90470,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' antb-PREDISPOSES-inpo-rev: @@ -82738,8 +90492,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' clnd-TREATS-mobd: @@ -82760,8 +90516,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' opco-AFFECTS-bpoc-rev: @@ -82784,6 +90542,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-COMPLICATES-cgab: @@ -82804,8 +90564,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: exacerbates + predicate: exacerbates_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-INHIBITS-ortf: @@ -82828,6 +90590,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -82854,6 +90618,8 @@ components: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -82880,6 +90646,8 @@ components: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inpo-DISRUPTS-tisu: @@ -82902,6 +90670,8 @@ components: semantic: GrossAnatomicalStructure predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' lipd-PART_OF-anst-rev: @@ -82924,6 +90694,8 @@ components: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-COEXISTS_WITH-antb: @@ -82946,6 +90718,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' clnd-CAUSES-dsyn: @@ -82968,6 +90742,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' clnd-CAUSES-dsyn-rev: @@ -82990,6 +90766,8 @@ components: semantic: Drug predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-CONVERTS_TO-phsu: @@ -83012,6 +90790,8 @@ components: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-DISRUPTS-celc: @@ -83034,6 +90814,8 @@ components: semantic: CellularComponent predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-DISRUPTS-celc-rev: @@ -83056,6 +90838,8 @@ components: semantic: Gene predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celf-AFFECTS-fngs-rev: @@ -83078,6 +90862,8 @@ components: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-STIMULATES-eico: @@ -83100,6 +90886,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -83126,6 +90914,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celf-AFFECTS-virs-rev: @@ -83148,6 +90938,8 @@ components: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-PREDISPOSES-sosy-rev: @@ -83168,8 +90960,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-AUGMENTS-biof: @@ -83192,6 +90986,8 @@ components: semantic: Phenomenon predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -83218,6 +91014,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -83244,6 +91042,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celc-PRODUCES-bdsu: @@ -83266,6 +91066,8 @@ components: semantic: AnatomicalEntity predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-PRODUCES-bdsu-rev: @@ -83288,6 +91090,8 @@ components: semantic: CellularComponent predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-AFFECTS-anst: @@ -83310,6 +91114,8 @@ components: semantic: AnatomicalEntity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-AFFECTS-anst-rev: @@ -83332,6 +91138,8 @@ components: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' acab-OCCURS_IN-aggp-rev: @@ -83354,6 +91162,8 @@ components: semantic: Disease predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-CONVERTS_TO-phsu: @@ -83376,6 +91186,8 @@ components: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' hops-DISRUPTS-celc-rev: @@ -83398,6 +91210,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bdsu_umls-LOCATION_OF-bacs_ncbigene: @@ -83420,6 +91234,8 @@ components: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' dsyn-COMPLICATES-anab: @@ -83439,11 +91255,37 @@ components: _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease - predicate: exacerbates + semantic: PhenotypicFeature + predicate: exacerbates_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' + dsyn-COMPLICATES-anab-rev: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: object.umls + parameters: + fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:COMPLICATES AND subject.semantic_type_abbreviation:dsyn AND + _exists_:subject.umls AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Disease + predicate: condition_exacerbated_by + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' hops-AUGMENTS-sosy-rev: - supportBatch: True useTemplating: True @@ -83464,6 +91306,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -83490,6 +91334,8 @@ components: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' irda-INTERACTS_WITH-horm: @@ -83512,6 +91358,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-ASSOCIATED_WITH-mobd: @@ -83534,6 +91382,8 @@ components: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nnon-DISRUPTS-tisu-rev: @@ -83556,6 +91406,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' neop_umls-PRODUCES-gngm_ncbigene: @@ -83578,6 +91430,8 @@ components: semantic: Gene predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' nsba-INTERACTS_WITH-gngm-rev: @@ -83600,6 +91454,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs_ncbigene-DISRUPTS-ortf_umls-rev: @@ -83622,6 +91478,8 @@ components: semantic: Gene predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' orch-AFFECTS-cgab: @@ -83644,6 +91502,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' neop-PRODUCES-bdsu: @@ -83666,6 +91526,8 @@ components: semantic: AnatomicalEntity predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' neop-PRODUCES-bdsu-rev: @@ -83688,6 +91550,8 @@ components: semantic: Disease predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cgab-LOCATION_OF-bact-rev: @@ -83710,6 +91574,8 @@ components: semantic: Disease predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-DISRUPTS-biof-rev: @@ -83732,6 +91598,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celf_umls-AFFECTS-aapp_ncbigene: @@ -83754,6 +91622,8 @@ components: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' imft-AUGMENTS-dsyn: @@ -83776,6 +91646,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -83802,6 +91674,8 @@ components: semantic: BiologicalEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -83828,6 +91702,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-STIMULATES-nusq: @@ -83850,6 +91726,8 @@ components: semantic: NucleicAcidEntity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -83876,6 +91754,8 @@ components: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -83902,6 +91782,8 @@ components: semantic: GrossAnatomicalStructure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-AFFECTS-bpoc-rev: @@ -83924,6 +91806,8 @@ components: semantic: Protein predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-INHIBITS-lipd_umls: @@ -83946,6 +91830,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -83972,6 +91858,8 @@ components: semantic: PhysiologicalProcess predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' emst-LOCATION_OF-emod-rev: @@ -83994,6 +91882,8 @@ components: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-INHIBITS-imft-rev: @@ -84016,6 +91906,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -84042,6 +91934,8 @@ components: semantic: Gene predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-CONVERTS_TO-gngm-rev: @@ -84064,6 +91958,8 @@ components: semantic: NucleicAcidEntity predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' medd-PREVENTS-mobd: @@ -84084,8 +91980,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-LOCATION_OF-imft: @@ -84108,6 +92006,8 @@ components: semantic: BiologicalEntity predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' virs-CAUSES-mobd: @@ -84130,6 +92030,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq_umls-INTERACTS_WITH-aapp_ncbigene: @@ -84152,6 +92054,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' nusq_umls-INTERACTS_WITH-aapp_ncbigene-rev: @@ -84174,6 +92078,8 @@ components: semantic: NucleicAcidEntity predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-CONVERTS_TO-gngm-rev: @@ -84196,6 +92102,8 @@ components: semantic: SmallMolecule predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-TREATS-patf-rev: @@ -84216,8 +92124,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-same_as-aapp_ncbigene: @@ -84240,6 +92150,8 @@ components: semantic: Gene predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' aapp_ncbigene-same_as-aapp_ncbigene-rev: @@ -84262,6 +92174,8 @@ components: semantic: Gene predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' eico_umls-COEXISTS_WITH-gngm_ncbigene-rev: @@ -84284,6 +92198,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nnon-INTERACTS_WITH-bodm-rev: @@ -84306,6 +92222,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' enzy-INTERACTS_WITH-aapp-rev: @@ -84328,6 +92246,8 @@ components: semantic: Protein predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-LOCATION_OF-mobd: @@ -84350,6 +92270,8 @@ components: semantic: Disease predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' biof-AFFECTS-virs: @@ -84372,6 +92294,8 @@ components: semantic: Virus predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' biof-AFFECTS-virs-rev: @@ -84394,6 +92318,8 @@ components: semantic: Phenomenon predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' plnt-LOCATION_OF-opco: @@ -84416,6 +92342,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-AFFECTS-biof: @@ -84438,6 +92366,8 @@ components: semantic: Phenomenon predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-AFFECTS-biof-rev: @@ -84460,6 +92390,8 @@ components: semantic: BiologicalEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' medd-TREATS-comd: @@ -84480,8 +92412,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-DISRUPTS-acab_umls: @@ -84504,6 +92438,8 @@ components: semantic: Disease predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inch-COEXISTS_WITH-rcpt-rev: @@ -84526,6 +92462,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-AFFECTS-orgf: @@ -84548,6 +92486,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-STIMULATES-eico_umls: @@ -84570,6 +92510,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -84596,6 +92538,8 @@ components: semantic: Fungus predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' biof-AFFECTS-fngs-rev: @@ -84618,6 +92562,8 @@ components: semantic: Phenomenon predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nsba-COEXISTS_WITH-gngm-rev: @@ -84640,6 +92586,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' acab-COEXISTS_WITH-emod-rev: @@ -84662,6 +92610,8 @@ components: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-DISRUPTS-sosy: @@ -84684,6 +92634,8 @@ components: semantic: PhenotypicFeature predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-DISRUPTS-sosy-rev: @@ -84706,6 +92658,8 @@ components: semantic: Gene predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' sosy-MANIFESTATION_OF-cgab: @@ -84728,6 +92682,8 @@ components: semantic: Disease predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' horm_ncbigene-TREATS-inpo_umls: @@ -84748,8 +92704,10 @@ components: outputs: - id: UMLS semantic: PathologicalProcess - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' strd-AUGMENTS-fndg-rev: @@ -84772,6 +92730,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -84798,6 +92758,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-COEXISTS_WITH-orch: @@ -84820,6 +92782,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-CONVERTS_TO-gngm: @@ -84842,6 +92806,8 @@ components: semantic: Gene predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-CONVERTS_TO-gngm-rev: @@ -84864,6 +92830,8 @@ components: semantic: Gene predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-CONVERTS_TO-phsu-rev: @@ -84886,6 +92854,8 @@ components: semantic: SmallMolecule predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cgab-AFFECTS-virs-rev: @@ -84908,6 +92878,8 @@ components: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-ADMINISTERED_TO-emod: @@ -84930,6 +92902,8 @@ components: semantic: BiologicalEntity predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-ADMINISTERED_TO-emod-rev: @@ -84952,6 +92926,8 @@ components: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-INTERACTS_WITH-opco: @@ -84974,6 +92950,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-PRODUCES-rcpt: @@ -84996,6 +92974,8 @@ components: semantic: Protein predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-PRODUCES-rcpt-rev: @@ -85018,6 +92998,8 @@ components: semantic: Cell predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-ASSOCIATED_WITH-sosy-rev: @@ -85040,6 +93022,8 @@ components: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bodm-CAUSES-neop: @@ -85062,6 +93046,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' elii-INHIBITS-aapp-rev: @@ -85084,6 +93070,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -85110,6 +93098,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' eico-DISRUPTS-cell-rev: @@ -85132,6 +93122,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-AFFECTS-biof: @@ -85154,6 +93146,8 @@ components: semantic: Phenomenon predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AFFECTS-biof-rev: @@ -85176,6 +93170,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt_umls-STIMULATES-gngm_ncbigene: @@ -85198,6 +93194,8 @@ components: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: @@ -85224,6 +93222,8 @@ components: semantic: Protein predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -85250,6 +93250,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-PRODUCES-bacs-rev: @@ -85272,6 +93274,8 @@ components: semantic: SmallMolecule predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-INTERACTS_WITH-bodm_umls: @@ -85294,6 +93298,8 @@ components: semantic: Device predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-INTERACTS_WITH-bodm_umls-rev: @@ -85316,6 +93322,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' emod-COEXISTS_WITH-patf: @@ -85338,6 +93346,8 @@ components: semantic: PathologicalProcess predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' emod-COEXISTS_WITH-patf-rev: @@ -85360,6 +93370,8 @@ components: semantic: BiologicalEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-AFFECTS-fndg-rev: @@ -85382,6 +93394,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PREVENTS-comd: @@ -85402,8 +93416,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-LOCATION_OF-enzy: @@ -85426,6 +93442,8 @@ components: semantic: Protein predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-LOCATION_OF-enzy-rev: @@ -85448,6 +93466,8 @@ components: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-TREATS-virs: @@ -85468,8 +93488,10 @@ components: outputs: - id: UMLS semantic: Virus - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-TREATS-virs-rev: @@ -85490,8 +93512,10 @@ components: outputs: - id: UMLS semantic: Polypeptide - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-DISRUPTS-acab: @@ -85514,6 +93538,8 @@ components: semantic: Disease predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' horm-COEXISTS_WITH-imft-rev: @@ -85536,6 +93562,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsf-AFFECTS-virs-rev: @@ -85558,6 +93586,8 @@ components: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' biof-AFFECTS-comd: @@ -85580,6 +93610,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' horm_ncbigene-ASSOCIATED_WITH-dsyn_umls-rev: @@ -85602,6 +93634,8 @@ components: semantic: Gene predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' opco-AFFECTS-inpo-rev: @@ -85624,6 +93658,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-DISRUPTS-bpoc-rev: @@ -85646,6 +93682,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' virs-INTERACTS_WITH-fngs: @@ -85668,6 +93706,8 @@ components: semantic: Fungus predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' virs-INTERACTS_WITH-fngs-rev: @@ -85690,6 +93730,8 @@ components: semantic: Virus predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' blor-LOCATION_OF-sosy-rev: @@ -85712,6 +93754,8 @@ components: semantic: AnatomicalEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' elii-DISRUPTS-inpo-rev: @@ -85734,6 +93778,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' blor-LOCATION_OF-patf: @@ -85756,6 +93802,8 @@ components: semantic: PathologicalProcess predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' irda-CAUSES-acab: @@ -85778,6 +93826,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' clnd-PREVENTS-dsyn: @@ -85798,8 +93848,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' clnd-PREVENTS-dsyn-rev: @@ -85820,8 +93872,10 @@ components: outputs: - id: UMLS semantic: Drug - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu_ncbigene-STIMULATES-gngm_umls-rev: @@ -85844,6 +93898,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -85870,6 +93926,8 @@ components: semantic: DiagnosticAid predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bdsu-LOCATION_OF-irda-rev: @@ -85892,6 +93950,8 @@ components: semantic: AnatomicalEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-INHIBITS-phsu: @@ -85914,6 +93974,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -85940,6 +94002,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' eico-TREATS-dsyn-rev: @@ -85960,8 +94024,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bsoj-LOCATION_OF-emod-rev: @@ -85984,6 +94050,8 @@ components: semantic: AnatomicalEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nnon-INTERACTS_WITH-rcpt-rev: @@ -86006,6 +94074,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-STIMULATES-antb_umls: @@ -86028,6 +94098,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -86054,6 +94126,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nnon-INTERACTS_WITH-imft-rev: @@ -86076,6 +94150,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-INHIBITS-rcpt: @@ -86098,6 +94174,8 @@ components: semantic: Protein predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -86124,6 +94202,8 @@ components: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -86150,6 +94230,8 @@ components: semantic: Disease predicate: has_manifestation source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-AUGMENTS-inpo: @@ -86172,6 +94254,8 @@ components: semantic: PathologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -86198,6 +94282,8 @@ components: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-AFFECTS-bpoc: @@ -86220,6 +94306,8 @@ components: semantic: GrossAnatomicalStructure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-AFFECTS-bpoc-rev: @@ -86242,6 +94330,8 @@ components: semantic: NucleicAcidEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-USES-hops: @@ -86264,6 +94354,8 @@ components: semantic: SmallMolecule predicate: has_input source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' medd-USES-orch: @@ -86286,6 +94378,8 @@ components: semantic: SmallMolecule predicate: has_input source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' biof-PRODUCES-enzy: @@ -86308,6 +94402,8 @@ components: semantic: Protein predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' biof-PRODUCES-enzy-rev: @@ -86330,6 +94426,8 @@ components: semantic: Phenomenon predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-STIMULATES-cell: @@ -86352,6 +94450,8 @@ components: semantic: Cell predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -86378,6 +94478,8 @@ components: semantic: BiologicalEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -86404,6 +94506,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -86430,6 +94534,8 @@ components: semantic: Protein predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' irda-INTERACTS_WITH-rcpt-rev: @@ -86452,6 +94558,8 @@ components: semantic: DiagnosticAid predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' eico-AFFECTS-dsyn-rev: @@ -86474,6 +94582,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-TREATS-virs-rev: @@ -86494,8 +94604,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-INTERACTS_WITH-nnon: @@ -86518,6 +94630,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nsba-INTERACTS_WITH-rcpt-rev: @@ -86540,6 +94654,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-INTERACTS_WITH-irda: @@ -86562,6 +94678,8 @@ components: semantic: DiagnosticAid predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-INTERACTS_WITH-irda-rev: @@ -86584,6 +94702,8 @@ components: semantic: Protein predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-AUGMENTS-cell_umls: @@ -86606,6 +94726,8 @@ components: semantic: Cell predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -86632,6 +94754,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -86658,6 +94782,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -86684,6 +94810,8 @@ components: semantic: Disease predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-CONVERTS_TO-gngm-rev: @@ -86706,6 +94834,8 @@ components: semantic: SmallMolecule predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' opco-CAUSES-sosy-rev: @@ -86728,6 +94858,8 @@ components: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cgab-PART_OF-bact-rev: @@ -86750,6 +94882,8 @@ components: semantic: Disease predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-TREATS-acab: @@ -86770,8 +94904,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' emod-PRODUCES-imft: @@ -86794,6 +94930,8 @@ components: semantic: BiologicalEntity predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' emod-PRODUCES-imft-rev: @@ -86816,6 +94954,8 @@ components: semantic: BiologicalEntity predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' mobd-AFFECTS-virs-rev: @@ -86838,6 +94978,8 @@ components: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' neop-PART_OF-fngs-rev: @@ -86860,6 +95002,8 @@ components: semantic: Disease predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' sosy-MANIFESTATION_OF-phsf: @@ -86882,6 +95026,8 @@ components: semantic: PhysiologicalProcess predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' sosy-MANIFESTATION_OF-phsf-rev: @@ -86904,6 +95050,8 @@ components: semantic: PhenotypicFeature predicate: has_manifestation source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nsba-DISRUPTS-sosy-rev: @@ -86926,6 +95074,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-CONVERTS_TO-imft: @@ -86948,6 +95098,8 @@ components: semantic: BiologicalEntity predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-CONVERTS_TO-imft-rev: @@ -86970,6 +95122,8 @@ components: semantic: BiologicalEntity predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-PART_OF-anst: @@ -86992,6 +95146,8 @@ components: semantic: AnatomicalEntity predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' carb-DISRUPTS-celc-rev: @@ -87014,6 +95170,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inpo-COMPLICATES-dsyn-rev: @@ -87034,8 +95192,10 @@ components: outputs: - id: UMLS semantic: PathologicalProcess - predicate: is_exacerbated_by + predicate: condition_exacerbated_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd-AFFECTS-sosy-rev: @@ -87058,6 +95218,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-PART_OF-fngs-rev: @@ -87080,6 +95242,8 @@ components: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' antb-AUGMENTS-inpo-rev: @@ -87102,6 +95266,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -87128,6 +95294,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -87154,6 +95322,8 @@ components: semantic: PhenotypicFeature predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-DISRUPTS-sosy_umls-rev: @@ -87176,8 +95346,34 @@ components: semantic: Gene predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' + anab-LOCATION_OF-fngs: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:fngs AND + _exists_:object.umls AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Fungus + predicate: location_of + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' anab-LOCATION_OF-fngs-rev: - supportBatch: True useTemplating: True @@ -87195,9 +95391,11 @@ components: _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-CONVERTS_TO-imft: @@ -87220,6 +95418,8 @@ components: semantic: BiologicalEntity predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-CONVERTS_TO-imft-rev: @@ -87242,6 +95442,8 @@ components: semantic: SmallMolecule predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-PRODUCES-eico_umls: @@ -87264,6 +95466,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' carb-same_as-carb: @@ -87286,6 +95490,8 @@ components: semantic: SmallMolecule predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' carb-same_as-carb-rev: @@ -87308,6 +95514,8 @@ components: semantic: SmallMolecule predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-INTERACTS_WITH-rcpt-rev: @@ -87330,6 +95538,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' opco-STIMULATES-gngm-rev: @@ -87352,6 +95562,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -87378,6 +95590,8 @@ components: semantic: GrossAnatomicalStructure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -87402,8 +95616,10 @@ components: outputs: - id: UMLS semantic: BiologicalEntity - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-PREVENTS-emod-rev: @@ -87424,8 +95640,10 @@ components: outputs: - id: UMLS semantic: Procedure - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-COEXISTS_WITH-rcpt-rev: @@ -87448,6 +95666,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' irda-CAUSES-mobd: @@ -87470,6 +95690,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-STIMULATES-enzy: @@ -87492,6 +95714,8 @@ components: semantic: Protein predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -87518,6 +95742,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -87544,6 +95770,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -87570,6 +95798,8 @@ components: semantic: Cell predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-INTERACTS_WITH-cell-rev: @@ -87592,6 +95822,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-PART_OF-aggp: @@ -87614,6 +95846,8 @@ components: semantic: Cohort predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-PART_OF-aggp-rev: @@ -87636,6 +95870,8 @@ components: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-INHIBITS-aapp: @@ -87658,6 +95894,8 @@ components: semantic: Polypeptide predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -87684,6 +95922,8 @@ components: semantic: BiologicalEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -87710,6 +95950,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fngs-LOCATION_OF-horm: @@ -87732,6 +95974,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' irda-INTERACTS_WITH-nsba: @@ -87754,6 +95998,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf_umls-PRODUCES-bacs_ncbigene: @@ -87776,6 +96022,8 @@ components: semantic: Gene predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' patf_umls-PRODUCES-bacs_ncbigene-rev: @@ -87798,6 +96046,8 @@ components: semantic: PathologicalProcess predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-COEXISTS_WITH-imft-rev: @@ -87820,6 +96070,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-PRODUCES-inch: @@ -87842,6 +96094,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-CAUSES-comd: @@ -87864,6 +96118,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf_umls-PRODUCES-horm_ncbigene: @@ -87886,6 +96142,8 @@ components: semantic: Gene predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' nsba-PREDISPOSES-mobd-rev: @@ -87906,8 +96164,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-INHIBITS-elii_umls: @@ -87930,6 +96190,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -87956,6 +96218,8 @@ components: semantic: Cohort predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PART_OF-aggp-rev: @@ -87978,6 +96242,8 @@ components: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-PREVENTS-neop: @@ -87998,8 +96264,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' emod-PRODUCES-bacs: @@ -88022,6 +96290,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' emod-PRODUCES-bacs-rev: @@ -88044,6 +96314,8 @@ components: semantic: BiologicalEntity predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-INTERACTS_WITH-carb: @@ -88066,6 +96338,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' opco-DISRUPTS-patf-rev: @@ -88088,6 +96362,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-INHIBITS-carb_umls: @@ -88110,6 +96386,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -88136,6 +96414,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc_umls-LOCATION_OF-horm_ncbigene: @@ -88158,6 +96438,8 @@ components: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' bodm_umls-INTERACTS_WITH-aapp_ncbigene: @@ -88180,6 +96462,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' bodm_umls-INTERACTS_WITH-aapp_ncbigene-rev: @@ -88202,6 +96486,8 @@ components: semantic: Device predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd-DISRUPTS-moft-rev: @@ -88224,6 +96510,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bodm-INTERACTS_WITH-hops: @@ -88246,6 +96534,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-COEXISTS_WITH-antb_umls: @@ -88268,6 +96558,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-PRODUCES-phsu: @@ -88290,6 +96582,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-PRODUCES-carb: @@ -88312,6 +96606,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-ASSOCIATED_WITH-sosy: @@ -88334,6 +96630,8 @@ components: semantic: PhenotypicFeature predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-ASSOCIATED_WITH-sosy-rev: @@ -88356,6 +96654,8 @@ components: semantic: BiologicalEntity predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-AUGMENTS-patf-rev: @@ -88378,6 +96678,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -88404,6 +96706,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-DISRUPTS-dsyn: @@ -88426,6 +96730,8 @@ components: semantic: Disease predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-PART_OF-anst: @@ -88448,6 +96754,8 @@ components: semantic: AnatomicalEntity predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' comd-AFFECTS-bact-rev: @@ -88470,6 +96778,8 @@ components: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' elii-DISRUPTS-celc-rev: @@ -88492,6 +96802,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bdsu-CAUSES-neop: @@ -88514,6 +96826,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-COMPLICATES-acab: @@ -88534,10 +96848,36 @@ components: outputs: - id: UMLS semantic: Disease - predicate: exacerbates + predicate: exacerbates_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' + strd-CAUSES-anab-rev: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: object.umls + parameters: + fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: SmallMolecule + predicate: caused_by + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' cgab-CAUSES-patf-rev: - supportBatch: True useTemplating: True @@ -88558,6 +96898,8 @@ components: semantic: Disease predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-AUGMENTS-bpoc-rev: @@ -88580,6 +96922,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -88604,8 +96948,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-STIMULATES-imft-rev: @@ -88628,6 +96974,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -88654,6 +97002,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' irda-INTERACTS_WITH-imft: @@ -88676,6 +97026,8 @@ components: semantic: BiologicalEntity predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' irda-INTERACTS_WITH-imft-rev: @@ -88698,6 +97050,8 @@ components: semantic: DiagnosticAid predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celc-LOCATION_OF-antb: @@ -88720,6 +97074,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc_umls-LOCATION_OF-nsba_ncbigene: @@ -88742,6 +97098,8 @@ components: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' sosy-MANIFESTATION_OF-anab: @@ -88761,11 +97119,37 @@ components: AND _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' + sosy-MANIFESTATION_OF-anab-rev: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: object.umls + parameters: + fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:MANIFESTATION_OF AND subject.semantic_type_abbreviation:sosy + AND _exists_:subject.umls AND pmid_count:>3 + outputs: + - id: UMLS + semantic: PhenotypicFeature + predicate: has_manifestation + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' patf-COMPLICATES-patf: - supportBatch: True useTemplating: True @@ -88784,8 +97168,10 @@ components: outputs: - id: UMLS semantic: PathologicalProcess - predicate: exacerbates + predicate: exacerbates_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-COMPLICATES-patf-rev: @@ -88806,8 +97192,10 @@ components: outputs: - id: UMLS semantic: PathologicalProcess - predicate: is_exacerbated_by + predicate: condition_exacerbated_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_umls-same_as-aapp_ncbigene: @@ -88830,6 +97218,8 @@ components: semantic: Gene predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' aapp_umls-same_as-aapp_ncbigene-rev: @@ -88852,6 +97242,8 @@ components: semantic: Polypeptide predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-LOCATION_OF-nnon: @@ -88874,6 +97266,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-PREDISPOSES-sosy-rev: @@ -88894,10 +97288,36 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' + anab-LOCATION_OF-virs: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:virs AND + _exists_:object.umls AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Virus + predicate: location_of + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' anab-LOCATION_OF-virs-rev: - supportBatch: True useTemplating: True @@ -88915,9 +97335,11 @@ components: _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-COEXISTS_WITH-elii: @@ -88940,6 +97362,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' elii-DISRUPTS-cell-rev: @@ -88962,6 +97386,32 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' + strd-TREATS-anab-rev: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: object.umls + parameters: + fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: SmallMolecule + predicate: subject_of_treatment_application_or_study_for_treatment_by + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-DISRUPTS-cell-rev: @@ -88984,6 +97434,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' antb-AFFECTS-sosy-rev: @@ -89006,6 +97458,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-CONVERTS_TO-gngm: @@ -89028,6 +97482,8 @@ components: semantic: Gene predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-CONVERTS_TO-gngm-rev: @@ -89050,6 +97506,8 @@ components: semantic: BiologicalEntity predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-DISRUPTS-celc-rev: @@ -89072,6 +97530,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-CONVERTS_TO-horm: @@ -89094,6 +97554,8 @@ components: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-COMPLICATES-inpo: @@ -89114,8 +97576,10 @@ components: outputs: - id: UMLS semantic: PathologicalProcess - predicate: exacerbates + predicate: exacerbates_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' opco-DISRUPTS-moft-rev: @@ -89138,6 +97602,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' clnd-AFFECTS-inpo: @@ -89160,6 +97626,8 @@ components: semantic: PathologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' clnd-AFFECTS-inpo-rev: @@ -89182,6 +97650,8 @@ components: semantic: Drug predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' clnd-CAUSES-patf: @@ -89204,6 +97674,8 @@ components: semantic: PathologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' clnd-CAUSES-patf-rev: @@ -89226,6 +97698,8 @@ components: semantic: Drug predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-INTERACTS_WITH-enzy_ncbigene: @@ -89248,6 +97722,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' tisu-PRODUCES-imft: @@ -89270,6 +97746,8 @@ components: semantic: BiologicalEntity predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' tisu-PRODUCES-imft-rev: @@ -89292,6 +97770,8 @@ components: semantic: GrossAnatomicalStructure predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' opco-AUGMENTS-celc-rev: @@ -89314,6 +97794,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -89340,6 +97822,8 @@ components: semantic: GrossAnatomicalStructure predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' antb-same_as-antb: @@ -89362,6 +97846,8 @@ components: semantic: SmallMolecule predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' antb-same_as-antb-rev: @@ -89384,6 +97870,8 @@ components: semantic: SmallMolecule predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-PRECEDES-horm: @@ -89406,6 +97894,8 @@ components: semantic: SmallMolecule predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs_ncbigene-INTERACTS_WITH-aapp_umls-rev: @@ -89428,30 +97918,10 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' - sosy-COEXISTS_WITH-anab: - - supportBatch: True - useTemplating: True - inputs: - - id: UMLS - semantic: PhenotypicFeature - requestBody: - body: - q: '{{ queryInputs }}' - scopes: subject.umls - parameters: - fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name - size: 1000 - filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:anab AND - _exists_:object.umls AND pmid_count:>3 - outputs: - - id: UMLS - semantic: Disease - predicate: coexists_with - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-STIMULATES-horm: - supportBatch: True useTemplating: True @@ -89472,6 +97942,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -89498,6 +97970,8 @@ components: semantic: Disease predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-INHIBITS-inch: @@ -89520,6 +97994,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -89546,6 +98022,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -89572,6 +98050,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -89598,6 +98078,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -89624,6 +98106,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu_ncbigene-INTERACTS_WITH-aapp_umls-rev: @@ -89646,6 +98130,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' nusq-COEXISTS_WITH-phsu: @@ -89668,6 +98154,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AUGMENTS-mobd: @@ -89690,6 +98178,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -89716,6 +98206,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -89742,6 +98234,8 @@ components: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-COEXISTS_WITH-nusq: @@ -89764,6 +98258,8 @@ components: semantic: NucleicAcidEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-COEXISTS_WITH-nusq-rev: @@ -89786,6 +98282,8 @@ components: semantic: BiologicalEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-AFFECTS-cgab: @@ -89808,6 +98306,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-PART_OF-bpoc-rev: @@ -89830,6 +98330,8 @@ components: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-COEXISTS_WITH-nusq-rev: @@ -89852,6 +98354,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' enzy_ncbigene-DISRUPTS-ortf_umls-rev: @@ -89874,6 +98378,8 @@ components: semantic: Gene predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' gngm_ncbigene-AFFECTS-biof_umls-rev: @@ -89896,6 +98402,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' enzy-PART_OF-bact: @@ -89918,6 +98426,8 @@ components: semantic: Bacterium predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' enzy-PART_OF-bact-rev: @@ -89940,6 +98450,8 @@ components: semantic: Protein predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq_umls-INTERACTS_WITH-gngm_ncbigene: @@ -89962,6 +98474,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' gngm-INHIBITS-horm: @@ -89984,6 +98498,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -90010,6 +98526,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' horm-AUGMENTS-sosy-rev: @@ -90032,6 +98550,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -90058,6 +98578,8 @@ components: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nnon-same_as-nnon: @@ -90080,6 +98602,8 @@ components: semantic: SmallMolecule predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nnon-same_as-nnon-rev: @@ -90102,6 +98626,8 @@ components: semantic: SmallMolecule predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-COEXISTS_WITH-imft: @@ -90124,6 +98650,8 @@ components: semantic: BiologicalEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-COEXISTS_WITH-imft-rev: @@ -90146,6 +98674,8 @@ components: semantic: NucleicAcidEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' opco-COEXISTS_WITH-aapp-rev: @@ -90168,6 +98698,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' mobd-MANIFESTATION_OF-inpo-rev: @@ -90190,6 +98722,8 @@ components: semantic: Disease predicate: has_manifestation source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nsba-PREDISPOSES-patf-rev: @@ -90210,8 +98744,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-AUGMENTS-comd-rev: @@ -90234,6 +98770,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -90260,6 +98798,8 @@ components: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-INHIBITS-bacs: @@ -90282,6 +98822,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -90308,6 +98850,8 @@ components: semantic: NucleicAcidEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -90334,6 +98878,8 @@ components: semantic: GrossAnatomicalStructure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nnon-STIMULATES-gngm-rev: @@ -90356,6 +98902,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -90382,6 +98930,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-INTERACTS_WITH-horm: @@ -90404,6 +98954,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_umls-INTERACTS_WITH-enzy_ncbigene: @@ -90426,6 +98978,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' aapp_ncbigene-PREDISPOSES-sosy_umls: @@ -90446,8 +99000,10 @@ components: outputs: - id: UMLS semantic: PhenotypicFeature - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-PREDISPOSES-sosy_umls-rev: @@ -90468,8 +99024,10 @@ components: outputs: - id: NCBIGene semantic: Gene - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' irda-INTERACTS_WITH-gngm: @@ -90492,6 +99050,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' irda-INTERACTS_WITH-gngm-rev: @@ -90514,6 +99074,8 @@ components: semantic: DiagnosticAid predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-MANIFESTATION_OF-phsf: @@ -90536,6 +99098,8 @@ components: semantic: PhysiologicalProcess predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-COEXISTS_WITH-rcpt_umls: @@ -90558,6 +99122,8 @@ components: semantic: Protein predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-COEXISTS_WITH-rcpt_umls-rev: @@ -90580,6 +99146,8 @@ components: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' acab-PART_OF-aggp-rev: @@ -90602,6 +99170,8 @@ components: semantic: Disease predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nnon-CAUSES-celf-rev: @@ -90624,6 +99194,8 @@ components: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-AFFECTS-emod: @@ -90646,6 +99218,8 @@ components: semantic: BiologicalEntity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-AFFECTS-emod-rev: @@ -90668,6 +99242,8 @@ components: semantic: Procedure predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nnon-DISRUPTS-inpo-rev: @@ -90690,6 +99266,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-LOCATION_OF-comd: @@ -90712,6 +99290,8 @@ components: semantic: Disease predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' sosy-MANIFESTATION_OF-dsyn: @@ -90734,6 +99314,8 @@ components: semantic: Disease predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nnon-PREVENTS-dsyn-rev: @@ -90754,8 +99336,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' neop-COMPLICATES-patf-rev: @@ -90776,8 +99360,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: is_exacerbated_by + predicate: condition_exacerbated_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc_umls-LOCATION_OF-phsu_ncbigene: @@ -90800,6 +99386,8 @@ components: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' elii-STIMULATES-enzy-rev: @@ -90822,6 +99410,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -90846,8 +99436,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-AFFECTS-celc: @@ -90870,6 +99462,8 @@ components: semantic: CellularComponent predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-AFFECTS-celc-rev: @@ -90892,6 +99486,8 @@ components: semantic: BiologicalEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu_ncbigene-TREATS-sosy_umls: @@ -90912,8 +99508,10 @@ components: outputs: - id: UMLS semantic: PhenotypicFeature - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu_ncbigene-TREATS-sosy_umls-rev: @@ -90934,8 +99532,10 @@ components: outputs: - id: NCBIGene semantic: Gene - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' gngm-INHIBITS-antb: @@ -90958,6 +99558,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -90984,6 +99586,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-DISRUPTS-moft: @@ -91006,6 +99610,8 @@ components: semantic: MolecularActivity predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-DISRUPTS-moft-rev: @@ -91028,6 +99634,8 @@ components: semantic: Protein predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nsba-AFFECTS-biof-rev: @@ -91050,6 +99658,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PRODUCES-nsba: @@ -91072,6 +99682,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' horm_ncbigene-TREATS-cgab_umls: @@ -91092,8 +99704,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bdsu-LOCATION_OF-nnon: @@ -91116,6 +99730,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-STIMULATES-elii: @@ -91138,6 +99754,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -91164,6 +99782,8 @@ components: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' virs-LOCATION_OF-gngm-rev: @@ -91186,6 +99806,8 @@ components: semantic: Virus predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd-STIMULATES-aapp-rev: @@ -91208,6 +99830,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -91234,6 +99858,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-CAUSES-neop: @@ -91256,6 +99882,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fngs-LOCATION_OF-rcpt: @@ -91278,6 +99906,8 @@ components: semantic: Protein predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fngs-LOCATION_OF-rcpt-rev: @@ -91300,6 +99930,8 @@ components: semantic: Fungus predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nsba-AFFECTS-fndg-rev: @@ -91322,6 +99954,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' opco_umls-STIMULATES-gngm_ncbigene-rev: @@ -91344,6 +99978,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -91367,9 +100003,11 @@ components: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-CONVERTS_TO-imft: @@ -91392,6 +100030,8 @@ components: semantic: BiologicalEntity predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-CONVERTS_TO-imft-rev: @@ -91414,6 +100054,8 @@ components: semantic: Gene predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-INTERACTS_WITH-nnon: @@ -91436,6 +100078,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' carb-AUGMENTS-biof-rev: @@ -91458,6 +100102,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -91484,6 +100130,8 @@ components: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PREDISPOSES-sosy: @@ -91504,8 +100152,10 @@ components: outputs: - id: UMLS semantic: PhenotypicFeature - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PREDISPOSES-sosy-rev: @@ -91526,8 +100176,10 @@ components: outputs: - id: UMLS semantic: Gene - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celc-PRODUCES-nnon: @@ -91550,6 +100202,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-AUGMENTS-inpo_umls: @@ -91572,6 +100226,8 @@ components: semantic: PathologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -91595,9 +100251,11 @@ components: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -91624,6 +100282,8 @@ components: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-AFFECTS-cgab: @@ -91646,6 +100306,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' elii-COEXISTS_WITH-nusq-rev: @@ -91668,6 +100330,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' antb-ASSOCIATED_WITH-dsyn-rev: @@ -91690,6 +100354,8 @@ components: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PRODUCES-carb: @@ -91712,6 +100378,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-AUGMENTS-celf: @@ -91734,6 +100402,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -91760,6 +100430,8 @@ components: semantic: Protein predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -91784,8 +100456,10 @@ components: outputs: - id: UMLS semantic: PathologicalProcess - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-PREVENTS-patf-rev: @@ -91806,8 +100480,10 @@ components: outputs: - id: UMLS semantic: BiologicalEntity - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bact-LOCATION_OF-phsu: @@ -91830,6 +100506,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' sosy-MANIFESTATION_OF-acab: @@ -91852,6 +100530,8 @@ components: semantic: Disease predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-LOCATION_OF-bodm: @@ -91874,6 +100554,8 @@ components: semantic: Device predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-LOCATION_OF-bodm-rev: @@ -91896,6 +100578,8 @@ components: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-PRODUCES-aapp: @@ -91918,6 +100602,8 @@ components: semantic: Polypeptide predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-PRODUCES-aapp-rev: @@ -91940,6 +100626,8 @@ components: semantic: SmallMolecule predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' patf-MANIFESTATION_OF-ortf: @@ -91962,6 +100650,8 @@ components: semantic: PhysiologicalProcess predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-TREATS-mobd: @@ -91982,8 +100672,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nnon-AUGMENTS-inpo-rev: @@ -92006,6 +100698,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -92032,6 +100726,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cgab-LOCATION_OF-fngs-rev: @@ -92054,6 +100750,8 @@ components: semantic: Disease predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-COEXISTS_WITH-rcpt_umls-rev: @@ -92076,6 +100774,8 @@ components: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' celf-PRODUCES-bdsu-rev: @@ -92098,6 +100798,8 @@ components: semantic: PhysiologicalProcess predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-INTERACTS_WITH-phsu: @@ -92120,6 +100822,32 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' + anab-LOCATION_OF-emod: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:LOCATION_OF AND object.semantic_type_abbreviation:emod AND + _exists_:object.umls AND pmid_count:>3 + outputs: + - id: UMLS + semantic: BiologicalEntity + predicate: location_of + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' anab-LOCATION_OF-emod-rev: @@ -92139,9 +100867,11 @@ components: _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-AUGMENTS-sosy_umls: @@ -92164,6 +100894,8 @@ components: semantic: PhenotypicFeature predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -92190,6 +100922,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -92216,6 +100950,8 @@ components: semantic: PhysiologicalProcess predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-OCCURS_IN-inpo: @@ -92238,6 +100974,8 @@ components: semantic: PathologicalProcess predicate: occurs_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-OCCURS_IN-inpo-rev: @@ -92260,6 +100998,8 @@ components: semantic: Disease predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-PREVENTS-acab_umls: @@ -92280,8 +101020,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-ADMINISTERED_TO-cell-rev: @@ -92304,6 +101046,8 @@ components: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-STIMULATES-moft-rev: @@ -92326,6 +101070,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -92352,6 +101098,8 @@ components: semantic: Protein predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' enzy-CAUSES-celf: @@ -92374,6 +101122,8 @@ components: semantic: PhysiologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' enzy-CAUSES-celf-rev: @@ -92396,6 +101146,8 @@ components: semantic: Protein predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-AUGMENTS-moft_umls: @@ -92418,6 +101170,8 @@ components: semantic: MolecularActivity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -92444,6 +101198,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -92470,6 +101226,8 @@ components: semantic: Disease predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' opco-INHIBITS-ortf-rev: @@ -92492,6 +101250,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -92518,6 +101278,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-CONVERTS_TO-gngm_ncbigene: @@ -92540,6 +101302,8 @@ components: semantic: Gene predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' aapp_ncbigene-CONVERTS_TO-gngm_ncbigene-rev: @@ -92562,6 +101326,8 @@ components: semantic: Gene predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' bacs-AUGMENTS-celc-rev: @@ -92584,6 +101350,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -92610,18 +101378,44 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased + anab-COMPLICATES-anab: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:COMPLICATES AND object.semantic_type_abbreviation:anab AND + _exists_:object.umls AND pmid_count:>3 + outputs: + - id: UMLS + semantic: PhenotypicFeature + predicate: exacerbates_condition + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' anab-COMPLICATES-anab-rev: - supportBatch: True useTemplating: True inputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature requestBody: body: q: '{{ queryInputs }}' @@ -92633,9 +101427,11 @@ components: _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease - predicate: is_exacerbated_by + semantic: PhenotypicFeature + predicate: condition_exacerbated_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-CAUSES-comd: @@ -92658,6 +101454,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' strd_umls-COEXISTS_WITH-gngm_ncbigene-rev: @@ -92680,6 +101478,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' elii-AUGMENTS-moft-rev: @@ -92702,6 +101502,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -92728,6 +101530,8 @@ components: semantic: GrossAnatomicalStructure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -92751,9 +101555,11 @@ components: AND _exists_:subject.umls AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: has_manifestation source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-ASSOCIATED_WITH-comd: @@ -92776,6 +101582,8 @@ components: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-PART_OF-aggp: @@ -92798,6 +101606,8 @@ components: semantic: Cohort predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-PART_OF-aggp-rev: @@ -92820,6 +101630,8 @@ components: semantic: NucleicAcidEntity predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bodm-COEXISTS_WITH-inch: @@ -92842,6 +101654,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bodm-COEXISTS_WITH-inch-rev: @@ -92864,6 +101678,8 @@ components: semantic: Device predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PRECEDES-topp: @@ -92886,6 +101702,8 @@ components: semantic: Procedure predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PRECEDES-topp-rev: @@ -92908,6 +101726,8 @@ components: semantic: Polypeptide predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' antb-INTERACTS_WITH-imft-rev: @@ -92930,6 +101750,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-same_as-inch: @@ -92952,6 +101774,8 @@ components: semantic: SmallMolecule predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inch-same_as-inch-rev: @@ -92974,6 +101798,8 @@ components: semantic: SmallMolecule predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-PRECEDES-nnon: @@ -92996,6 +101822,8 @@ components: semantic: SmallMolecule predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PRODUCES-lipd: @@ -93018,6 +101846,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nsba-INTERACTS_WITH-irda-rev: @@ -93040,6 +101870,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' patf-PRODUCES-nsba: @@ -93062,6 +101894,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-INHIBITS-lipd: @@ -93084,6 +101918,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -93110,6 +101946,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-CAUSES-mobd: @@ -93132,6 +101970,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-CAUSES-mobd: @@ -93154,6 +101994,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' strd-INHIBITS-aapp-rev: @@ -93176,6 +102018,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -93202,6 +102046,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -93228,6 +102074,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' comd-AFFECTS-fngs-rev: @@ -93250,6 +102098,8 @@ components: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-CONVERTS_TO-strd: @@ -93272,6 +102122,8 @@ components: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu_ncbigene-TREATS-acab_umls: @@ -93292,8 +102144,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsf-ASSOCIATED_WITH-bacs: @@ -93316,6 +102170,8 @@ components: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-COEXISTS_WITH-nnon: @@ -93338,6 +102194,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-AFFECTS-emst_umls: @@ -93360,6 +102218,8 @@ components: semantic: GrossAnatomicalStructure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' comd-PRODUCES-enzy: @@ -93382,6 +102242,8 @@ components: semantic: Protein predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' comd-PRODUCES-enzy-rev: @@ -93404,6 +102266,8 @@ components: semantic: Disease predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nsba-DISRUPTS-patf-rev: @@ -93426,6 +102290,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-AFFECTS-emod-rev: @@ -93448,6 +102314,8 @@ components: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-AUGMENTS-moft: @@ -93470,6 +102338,8 @@ components: semantic: MolecularActivity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -93496,6 +102366,8 @@ components: semantic: Protein predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -93522,6 +102394,8 @@ components: semantic: PathologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-INTERACTS_WITH-enzy: @@ -93544,6 +102418,8 @@ components: semantic: Protein predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-CONVERTS_TO-bacs: @@ -93566,6 +102442,8 @@ components: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-CONVERTS_TO-bacs-rev: @@ -93588,6 +102466,8 @@ components: semantic: NucleicAcidEntity predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' patf-COEXISTS_WITH-sosy: @@ -93610,30 +102490,10 @@ components: semantic: PhenotypicFeature predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' - patf-COEXISTS_WITH-sosy-rev: - - supportBatch: True - useTemplating: True - inputs: - - id: UMLS - semantic: PhenotypicFeature - requestBody: - body: - q: '{{ queryInputs }}' - scopes: object.umls - parameters: - fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name - size: 1000 - filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:patf - AND _exists_:subject.umls AND pmid_count:>3 - outputs: - - id: UMLS - semantic: PathologicalProcess - predicate: coexists_with - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' acab-MANIFESTATION_OF-celf-rev: - supportBatch: True useTemplating: True @@ -93654,6 +102514,8 @@ components: semantic: Disease predicate: has_manifestation source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' irda-INHIBITS-gngm: @@ -93676,6 +102538,8 @@ components: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -93702,6 +102566,8 @@ components: semantic: DiagnosticAid predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -93728,6 +102594,8 @@ components: semantic: Polypeptide predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-same_as-aapp_umls-rev: @@ -93750,6 +102618,8 @@ components: semantic: Gene predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' aapp-DISRUPTS-emst: @@ -93772,6 +102642,8 @@ components: semantic: GrossAnatomicalStructure predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' opco-DISRUPTS-bpoc-rev: @@ -93794,6 +102666,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celf_umls-PRODUCES-aapp_ncbigene: @@ -93816,6 +102690,8 @@ components: semantic: Gene predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' anst-LOCATION_OF-fngs: @@ -93838,6 +102714,8 @@ components: semantic: Fungus predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' anst-LOCATION_OF-fngs-rev: @@ -93860,6 +102738,8 @@ components: semantic: AnatomicalEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' antb-DISRUPTS-sosy-rev: @@ -93882,6 +102762,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' enzy-DISRUPTS-celf: @@ -93904,6 +102786,8 @@ components: semantic: PhysiologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' virs-LOCATION_OF-rcpt: @@ -93926,6 +102810,8 @@ components: semantic: Protein predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' virs-LOCATION_OF-rcpt-rev: @@ -93948,6 +102834,8 @@ components: semantic: Virus predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' irda-DISRUPTS-moft: @@ -93970,6 +102858,8 @@ components: semantic: MolecularActivity predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' irda-DISRUPTS-moft-rev: @@ -93992,6 +102882,8 @@ components: semantic: DiagnosticAid predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-STIMULATES-carb: @@ -94014,6 +102906,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -94040,6 +102934,8 @@ components: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-INTERACTS_WITH-strd: @@ -94062,6 +102958,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-USES-eico: @@ -94084,6 +102982,8 @@ components: semantic: SmallMolecule predicate: has_input source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-INTERACTS_WITH-bact: @@ -94106,6 +103006,8 @@ components: semantic: Bacterium predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-INTERACTS_WITH-bact-rev: @@ -94128,6 +103030,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-COEXISTS_WITH-horm: @@ -94150,6 +103054,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bact-LOCATION_OF-strd: @@ -94172,6 +103078,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inch-AUGMENTS-anst-rev: @@ -94194,6 +103102,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -94220,6 +103130,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' diap-COEXISTS_WITH-topp: @@ -94242,6 +103154,8 @@ components: semantic: Procedure predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' diap-COEXISTS_WITH-topp-rev: @@ -94264,6 +103178,8 @@ components: semantic: Procedure predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft_umls-STIMULATES-aapp_ncbigene: @@ -94286,6 +103202,8 @@ components: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: @@ -94312,6 +103230,8 @@ components: semantic: Gene predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PRODUCES-gngm-rev: @@ -94334,6 +103254,8 @@ components: semantic: Polypeptide predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-INTERACTS_WITH-inch: @@ -94356,6 +103278,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-PART_OF-phsu: @@ -94378,6 +103302,8 @@ components: semantic: SmallMolecule predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-PART_OF-phsu-rev: @@ -94400,6 +103326,8 @@ components: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd-INTERACTS_WITH-gngm-rev: @@ -94422,6 +103350,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-STIMULATES-imft-rev: @@ -94444,6 +103374,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -94470,6 +103402,8 @@ components: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-AFFECTS-emod_umls: @@ -94492,6 +103426,8 @@ components: semantic: BiologicalEntity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-AFFECTS-emod_umls-rev: @@ -94514,6 +103450,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' nsba-TREATS-mobd-rev: @@ -94534,8 +103472,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd-PREDISPOSES-patf-rev: @@ -94556,8 +103496,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' plnt-LOCATION_OF-nsba: @@ -94580,6 +103522,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-AUGMENTS-moft_umls-rev: @@ -94602,6 +103546,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -94628,6 +103574,8 @@ components: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-DISRUPTS-biof: @@ -94650,6 +103598,8 @@ components: semantic: Phenomenon predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-DISRUPTS-biof-rev: @@ -94672,6 +103622,8 @@ components: semantic: Gene predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' eico-INTERACTS_WITH-imft-rev: @@ -94694,6 +103646,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' medd-CAUSES-mobd: @@ -94716,6 +103670,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq_umls-INHIBITS-gngm_ncbigene: @@ -94738,6 +103694,8 @@ components: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: @@ -94764,6 +103722,8 @@ components: semantic: NucleicAcidEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -94790,6 +103750,8 @@ components: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: @@ -94816,6 +103778,8 @@ components: semantic: Protein predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -94842,6 +103806,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -94868,6 +103834,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' irda-ADMINISTERED_TO-cell: @@ -94890,6 +103858,8 @@ components: semantic: Cell predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' irda-ADMINISTERED_TO-cell-rev: @@ -94912,6 +103882,8 @@ components: semantic: DiagnosticAid predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsf-PRODUCES-aapp-rev: @@ -94934,6 +103906,8 @@ components: semantic: PhysiologicalProcess predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' irda-COEXISTS_WITH-hops: @@ -94956,6 +103930,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-COMPLICATES-neop: @@ -94976,8 +103952,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: exacerbates + predicate: exacerbates_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-INTERACTS_WITH-bact_umls-rev: @@ -95000,6 +103978,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' imft-STIMULATES-orch: @@ -95022,6 +104002,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -95048,6 +104030,8 @@ components: semantic: Disease predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' mobd-MANIFESTATION_OF-orgf-rev: @@ -95070,6 +104054,8 @@ components: semantic: Disease predicate: has_manifestation source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-INHIBITS-strd_umls: @@ -95092,6 +104078,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -95118,6 +104106,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -95144,6 +104134,8 @@ components: semantic: BiologicalEntity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celf-AFFECTS-emod-rev: @@ -95166,6 +104158,8 @@ components: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nsba-CAUSES-phsf-rev: @@ -95188,6 +104182,8 @@ components: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' elii-DISRUPTS-neop-rev: @@ -95210,6 +104206,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bdsu_umls-LOCATION_OF-phsu_ncbigene: @@ -95232,6 +104230,8 @@ components: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' rcpt-INTERACTS_WITH-inch: @@ -95254,6 +104254,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cgab-MANIFESTATION_OF-orgf-rev: @@ -95276,6 +104278,8 @@ components: semantic: Disease predicate: has_manifestation source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' enzy-PART_OF-celc-rev: @@ -95298,6 +104302,8 @@ components: semantic: Protein predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-STIMULATES-antb: @@ -95320,6 +104326,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -95346,6 +104354,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -95372,6 +104382,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-PRODUCES-horm: @@ -95394,6 +104406,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-AFFECTS-celc: @@ -95416,6 +104430,8 @@ components: semantic: CellularComponent predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-AFFECTS-celc-rev: @@ -95438,6 +104454,8 @@ components: semantic: NucleicAcidEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-CAUSES-celf-rev: @@ -95460,6 +104478,8 @@ components: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nnon-INHIBITS-bacs-rev: @@ -95482,6 +104502,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -95508,6 +104530,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-TREATS-virs_umls-rev: @@ -95528,8 +104552,10 @@ components: outputs: - id: NCBIGene semantic: Gene - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' orch-INHIBITS-rcpt: @@ -95552,6 +104578,8 @@ components: semantic: Protein predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -95578,6 +104606,8 @@ components: semantic: BiologicalEntity predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-PRODUCES-imft-rev: @@ -95600,6 +104630,8 @@ components: semantic: CellularComponent predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-COEXISTS_WITH-strd_umls: @@ -95622,6 +104654,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-INHIBITS-orch: @@ -95644,6 +104678,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -95668,8 +104704,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-PREVENTS-sosy-rev: @@ -95690,8 +104728,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-AFFECTS-phsf: @@ -95714,6 +104754,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-CAUSES-cgab: @@ -95736,6 +104778,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-AFFECTS-emod: @@ -95758,6 +104802,8 @@ components: semantic: BiologicalEntity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-AFFECTS-emod-rev: @@ -95780,6 +104826,8 @@ components: semantic: PathologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nnon-PART_OF-virs-rev: @@ -95802,6 +104850,8 @@ components: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-PART_OF-aapp-rev: @@ -95824,6 +104874,8 @@ components: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' diap-USES-aapp-rev: @@ -95846,6 +104898,8 @@ components: semantic: Procedure predicate: is_input_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsf-PRODUCES-bdsu-rev: @@ -95868,6 +104922,8 @@ components: semantic: PhysiologicalProcess predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-INTERACTS_WITH-strd: @@ -95890,6 +104946,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-STIMULATES-lipd: @@ -95912,6 +104970,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -95938,6 +104998,8 @@ components: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsf-AFFECTS-fngs-rev: @@ -95960,6 +105022,8 @@ components: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-PRODUCES-gngm_ncbigene: @@ -95982,6 +105046,8 @@ components: semantic: Gene predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' gngm_ncbigene-INTERACTS_WITH-enzy_umls: @@ -96004,6 +105070,8 @@ components: semantic: Protein predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-INHIBITS-inch_umls: @@ -96026,6 +105094,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -96052,6 +105122,8 @@ components: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bdsu-CAUSES-mobd: @@ -96074,6 +105146,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' comd-PRECEDES-patf-rev: @@ -96096,6 +105170,8 @@ components: semantic: Disease predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-PREDISPOSES-sosy-rev: @@ -96116,8 +105192,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd-PART_OF-bact-rev: @@ -96140,6 +105218,8 @@ components: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-STIMULATES-nsba: @@ -96162,6 +105242,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -96188,6 +105270,8 @@ components: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-PRODUCES-carb: @@ -96210,6 +105294,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' clnd-PREVENTS-inpo: @@ -96230,8 +105316,10 @@ components: outputs: - id: UMLS semantic: PathologicalProcess - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' clnd-PREVENTS-inpo-rev: @@ -96252,8 +105340,10 @@ components: outputs: - id: UMLS semantic: Drug - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-INHIBITS-ortf-rev: @@ -96276,6 +105366,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -96302,6 +105394,8 @@ components: semantic: Disease predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' fngs-CAUSES-comd: @@ -96324,6 +105418,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' opco-PREVENTS-inpo-rev: @@ -96344,8 +105440,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' enzy-ASSOCIATED_WITH-neop-rev: @@ -96368,6 +105466,8 @@ components: semantic: Protein predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd-CAUSES-phsf-rev: @@ -96390,6 +105490,8 @@ components: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' food-CAUSES-cgab: @@ -96412,6 +105514,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-AUGMENTS-cell_umls-rev: @@ -96434,6 +105538,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -96460,6 +105566,8 @@ components: semantic: PhysiologicalProcess predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' lbtr-MANIFESTATION_OF-celf-rev: @@ -96482,6 +105590,8 @@ components: semantic: Phenomenon predicate: has_manifestation source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-STIMULATES-orgf: @@ -96504,6 +105614,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -96530,6 +105642,8 @@ components: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -96556,6 +105670,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' inpo-DISRUPTS-celc: @@ -96578,6 +105694,8 @@ components: semantic: CellularComponent predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inpo-DISRUPTS-celc-rev: @@ -96600,6 +105718,8 @@ components: semantic: PathologicalProcess predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' fndg-COEXISTS_WITH-neop: @@ -96622,6 +105742,8 @@ components: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' eico-ASSOCIATED_WITH-sosy-rev: @@ -96644,6 +105766,8 @@ components: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-DISRUPTS-bpoc-rev: @@ -96666,6 +105790,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-ADMINISTERED_TO-aggp-rev: @@ -96688,6 +105814,8 @@ components: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' patf-CAUSES-patf-rev: @@ -96710,6 +105838,8 @@ components: semantic: PathologicalProcess predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-TREATS-patf: @@ -96730,8 +105860,10 @@ components: outputs: - id: UMLS semantic: PathologicalProcess - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-TREATS-patf-rev: @@ -96752,8 +105884,10 @@ components: outputs: - id: UMLS semantic: BiologicalEntity - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-INTERACTS_WITH-nsba: @@ -96776,6 +105910,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-same_as-gngm_ncbigene: @@ -96798,6 +105934,8 @@ components: semantic: Gene predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' gngm_ncbigene-same_as-gngm_ncbigene-rev: @@ -96820,6 +105958,8 @@ components: semantic: Gene predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' gngm_ncbigene-PRODUCES-strd_umls: @@ -96842,6 +105982,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs_ncbigene-ASSOCIATED_WITH-dsyn_umls-rev: @@ -96864,6 +106006,8 @@ components: semantic: Gene predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' gngm-PRODUCES-hops: @@ -96886,6 +106030,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-PART_OF-aggp: @@ -96908,6 +106054,8 @@ components: semantic: Cohort predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-PART_OF-aggp-rev: @@ -96930,6 +106078,8 @@ components: semantic: BiologicalEntity predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell_umls-LOCATION_OF-phsu_ncbigene: @@ -96952,6 +106102,8 @@ components: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' bpoc-PRODUCES-gngm: @@ -96974,6 +106126,8 @@ components: semantic: Gene predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-PRODUCES-gngm-rev: @@ -96996,6 +106150,8 @@ components: semantic: GrossAnatomicalStructure predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-TREATS-cgab: @@ -97016,8 +106172,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' carb-DISRUPTS-moft-rev: @@ -97040,6 +106198,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-PRODUCES-gngm_umls: @@ -97062,6 +106222,8 @@ components: semantic: Gene predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-PRODUCES-gngm_umls-rev: @@ -97084,6 +106246,8 @@ components: semantic: Gene predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' rcpt-AFFECTS-celc: @@ -97106,6 +106270,8 @@ components: semantic: CellularComponent predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-AFFECTS-celc-rev: @@ -97128,6 +106294,8 @@ components: semantic: Protein predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-PART_OF-celc-rev: @@ -97150,6 +106318,8 @@ components: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orgf-AFFECTS-emod-rev: @@ -97172,6 +106342,8 @@ components: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' antb-STIMULATES-imft-rev: @@ -97194,6 +106366,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -97220,6 +106394,8 @@ components: semantic: BiologicalEntity predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-CONVERTS_TO-imft_umls-rev: @@ -97242,6 +106418,8 @@ components: semantic: Gene predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' horm-AUGMENTS-anab: @@ -97261,9 +106439,11 @@ components: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -97290,6 +106470,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -97316,6 +106498,8 @@ components: semantic: SmallMolecule predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' irda_umls-INHIBITS-gngm_ncbigene: @@ -97338,6 +106522,8 @@ components: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: @@ -97364,6 +106550,8 @@ components: semantic: DiagnosticAid predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -97390,6 +106578,8 @@ components: semantic: BiologicalEntity predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-PRECEDES-emod-rev: @@ -97412,6 +106602,8 @@ components: semantic: Disease predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' enzy-DISRUPTS-orgf: @@ -97434,6 +106626,8 @@ components: semantic: PhysiologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fndg-COMPLICATES-inpo: @@ -97454,8 +106648,10 @@ components: outputs: - id: UMLS semantic: PathologicalProcess - predicate: exacerbates + predicate: exacerbates_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fndg-COMPLICATES-inpo-rev: @@ -97476,8 +106672,10 @@ components: outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - predicate: is_exacerbated_by + predicate: condition_exacerbated_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-same_as-orch-rev: @@ -97500,6 +106698,8 @@ components: semantic: SmallMolecule predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-PRODUCES-phsu: @@ -97522,6 +106722,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-DISRUPTS-inpo: @@ -97544,6 +106746,8 @@ components: semantic: PathologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' irda-CAUSES-celf: @@ -97566,6 +106770,8 @@ components: semantic: PhysiologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' irda-CAUSES-celf-rev: @@ -97588,6 +106794,8 @@ components: semantic: DiagnosticAid predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-ADMINISTERED_TO-aggp-rev: @@ -97610,6 +106818,8 @@ components: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-AUGMENTS-fndg-rev: @@ -97632,6 +106842,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -97658,6 +106870,8 @@ components: semantic: Protein predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-INTERACTS_WITH-imft-rev: @@ -97680,6 +106894,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' fngs-LOCATION_OF-nsba: @@ -97702,6 +106918,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' strd-DISRUPTS-neop-rev: @@ -97724,6 +106942,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-AFFECTS-inpo: @@ -97746,6 +106966,8 @@ components: semantic: PathologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-LOCATION_OF-imft: @@ -97768,6 +106990,8 @@ components: semantic: BiologicalEntity predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-INTERACTS_WITH-eico: @@ -97790,6 +107014,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' carb-AFFECTS-moft-rev: @@ -97812,6 +107038,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_umls-CONVERTS_TO-gngm_ncbigene: @@ -97834,6 +107062,8 @@ components: semantic: Gene predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' gngm_umls-CONVERTS_TO-gngm_ncbigene-rev: @@ -97856,6 +107086,56 @@ components: semantic: Gene predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' + sbst-CAUSES-anab: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: ChemicalEntity + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:anab AND _exists_:object.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: PhenotypicFeature + predicate: causes + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' + sbst-CAUSES-anab-rev: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: object.umls + parameters: + fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:sbst AND _exists_:subject.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: ChemicalEntity + predicate: caused_by + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-CAUSES-celf: @@ -97878,6 +107158,8 @@ components: semantic: PhysiologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-CAUSES-celf-rev: @@ -97900,6 +107182,8 @@ components: semantic: BiologicalEntity predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' tisu-LOCATION_OF-irda-rev: @@ -97922,6 +107206,8 @@ components: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-AUGMENTS-biof_umls: @@ -97944,6 +107230,8 @@ components: semantic: Phenomenon predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -97970,6 +107258,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -97994,8 +107284,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-COEXISTS_WITH-nusq-rev: @@ -98018,6 +107310,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-DISRUPTS-sosy_umls-rev: @@ -98040,8 +107334,34 @@ components: semantic: Gene predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' + mobd-COEXISTS_WITH-anab-rev: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: object.umls + parameters: + fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:COEXISTS_WITH AND subject.semantic_type_abbreviation:mobd + AND _exists_:subject.umls AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Disease + predicate: coexists_with + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' horm_ncbigene-STIMULATES-gngm_umls-rev: - supportBatch: True useTemplating: True @@ -98062,6 +107382,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -98088,6 +107410,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -98114,6 +107438,8 @@ components: semantic: Protein predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -98140,6 +107466,8 @@ components: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inch-AUGMENTS-moft-rev: @@ -98162,6 +107490,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -98188,6 +107518,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -98214,6 +107546,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nnon-DISRUPTS-celc-rev: @@ -98236,6 +107570,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-STIMULATES-bacs: @@ -98258,6 +107594,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -98284,6 +107622,8 @@ components: semantic: Protein predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -98310,6 +107650,8 @@ components: semantic: Procedure predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-AUGMENTS-celf: @@ -98332,6 +107674,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -98358,6 +107702,8 @@ components: semantic: NucleicAcidEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -98384,6 +107730,8 @@ components: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-INTERACTS_WITH-antb: @@ -98406,6 +107754,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-AUGMENTS-sosy_umls-rev: @@ -98428,6 +107778,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -98454,6 +107806,8 @@ components: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: @@ -98478,8 +107832,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: exacerbates + predicate: exacerbates_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-COMPLICATES-dsyn-rev: @@ -98500,8 +107856,10 @@ components: outputs: - id: UMLS semantic: Procedure - predicate: is_exacerbated_by + predicate: condition_exacerbated_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' mobd-PRECEDES-patf-rev: @@ -98524,6 +107882,8 @@ components: semantic: Disease predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-AFFECTS-emod: @@ -98546,6 +107906,8 @@ components: semantic: BiologicalEntity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-AFFECTS-emod-rev: @@ -98568,6 +107930,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' biof-PRODUCES-imft: @@ -98590,6 +107954,8 @@ components: semantic: BiologicalEntity predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' biof-PRODUCES-imft-rev: @@ -98612,6 +107978,8 @@ components: semantic: Phenomenon predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-AFFECTS-emod-rev: @@ -98634,6 +108002,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' ortf-AFFECTS-bact-rev: @@ -98656,6 +108026,8 @@ components: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-AUGMENTS-biof-rev: @@ -98678,6 +108050,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -98702,8 +108076,10 @@ components: outputs: - id: UMLS semantic: PathologicalProcess - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-PART_OF-anst: @@ -98726,6 +108102,8 @@ components: semantic: AnatomicalEntity predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-PART_OF-anst-rev: @@ -98748,6 +108126,8 @@ components: semantic: NucleicAcidEntity predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-DISRUPTS-biof-rev: @@ -98770,6 +108150,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-PRODUCES-imft_umls: @@ -98792,6 +108174,8 @@ components: semantic: BiologicalEntity predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-PRODUCES-imft_umls-rev: @@ -98814,6 +108198,8 @@ components: semantic: Gene predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' patf_umls-PRODUCES-imft_ncbigene: @@ -98836,6 +108222,8 @@ components: semantic: Gene predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' rcpt-DISRUPTS-bpoc: @@ -98858,6 +108246,8 @@ components: semantic: GrossAnatomicalStructure predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-DISRUPTS-bpoc-rev: @@ -98880,6 +108270,8 @@ components: semantic: Protein predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-ASSOCIATED_WITH-sosy-rev: @@ -98902,6 +108294,8 @@ components: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell-LOCATION_OF-irda: @@ -98924,6 +108318,8 @@ components: semantic: DiagnosticAid predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-LOCATION_OF-irda-rev: @@ -98946,6 +108342,8 @@ components: semantic: Cell predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-CONVERTS_TO-nusq: @@ -98968,6 +108366,8 @@ components: semantic: NucleicAcidEntity predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-CONVERTS_TO-nusq-rev: @@ -98990,6 +108390,8 @@ components: semantic: Gene predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' clnd-AFFECTS-dsyn: @@ -99012,6 +108414,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' clnd-AFFECTS-dsyn-rev: @@ -99034,6 +108438,8 @@ components: semantic: Drug predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-PRODUCES-rcpt: @@ -99056,6 +108462,8 @@ components: semantic: Protein predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PRODUCES-rcpt-rev: @@ -99078,6 +108486,8 @@ components: semantic: Gene predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cgab-PROCESS_OF-aggp-rev: @@ -99100,6 +108510,8 @@ components: semantic: Disease predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs_ncbigene-CAUSES-biof_umls: @@ -99122,6 +108534,8 @@ components: semantic: Phenomenon predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs_ncbigene-CAUSES-biof_umls-rev: @@ -99144,6 +108558,8 @@ components: semantic: Gene predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' lipd-PART_OF-virs-rev: @@ -99166,6 +108582,8 @@ components: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-DISRUPTS-moft: @@ -99188,6 +108606,8 @@ components: semantic: MolecularActivity predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-DISRUPTS-moft-rev: @@ -99210,6 +108630,8 @@ components: semantic: NucleicAcidEntity predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' enzy-INHIBITS-gngm-rev: @@ -99232,6 +108654,8 @@ components: semantic: Protein predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -99258,6 +108682,8 @@ components: semantic: Protein predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -99284,6 +108710,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -99310,6 +108738,8 @@ components: semantic: Disease predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cgab-MANIFESTATION_OF-patf-rev: @@ -99332,6 +108762,8 @@ components: semantic: Disease predicate: has_manifestation source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsf-ASSOCIATED_WITH-horm: @@ -99354,6 +108786,8 @@ components: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PREVENTS-neop: @@ -99374,8 +108808,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PREVENTS-neop-rev: @@ -99396,8 +108832,10 @@ components: outputs: - id: UMLS semantic: Gene - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-INTERACTS_WITH-irda-rev: @@ -99420,6 +108858,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-CAUSES-orgf: @@ -99442,6 +108882,8 @@ components: semantic: PhysiologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' eico-AUGMENTS-patf-rev: @@ -99464,6 +108906,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -99488,8 +108932,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' opco_umls-INTERACTS_WITH-aapp_ncbigene-rev: @@ -99512,6 +108958,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-INHIBITS-fndg-rev: @@ -99534,6 +108982,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -99560,6 +109010,8 @@ components: semantic: Protein predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-COEXISTS_WITH-rcpt-rev: @@ -99582,6 +109034,8 @@ components: semantic: BiologicalEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-COEXISTS_WITH-elii: @@ -99604,6 +109058,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nsba-DISRUPTS-mobd-rev: @@ -99626,6 +109082,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' opco-AUGMENTS-moft-rev: @@ -99648,6 +109106,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -99674,6 +109134,8 @@ components: semantic: Procedure predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' horm-PRECEDES-topp-rev: @@ -99696,6 +109158,8 @@ components: semantic: SmallMolecule predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' opco-INHIBITS-bacs-rev: @@ -99718,6 +109182,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -99744,6 +109210,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-AFFECTS-comd: @@ -99766,6 +109234,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-AUGMENTS-moft: @@ -99788,6 +109258,8 @@ components: semantic: MolecularActivity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -99814,6 +109286,8 @@ components: semantic: NucleicAcidEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -99840,6 +109314,8 @@ components: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: @@ -99866,6 +109342,8 @@ components: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' inch-AFFECTS-anst-rev: @@ -99888,6 +109366,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bdsu-CAUSES-anab: @@ -99907,11 +109387,37 @@ components: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' + bdsu-CAUSES-anab-rev: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: object.umls + parameters: + fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:bdsu AND _exists_:subject.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: AnatomicalEntity + predicate: caused_by + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' topp-USES-irda-rev: - supportBatch: True useTemplating: True @@ -99932,6 +109438,8 @@ components: semantic: Procedure predicate: is_input_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-PART_OF-celc-rev: @@ -99954,6 +109462,8 @@ components: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-DISRUPTS-emst: @@ -99976,6 +109486,8 @@ components: semantic: GrossAnatomicalStructure predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-DISRUPTS-emst-rev: @@ -99998,6 +109510,8 @@ components: semantic: Procedure predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-INTERACTS_WITH-rcpt-rev: @@ -100020,6 +109534,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-DISRUPTS-biof-rev: @@ -100042,6 +109558,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-USES-drdd: @@ -100064,6 +109582,8 @@ components: semantic: Device predicate: has_input source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-PRECEDES-topp-rev: @@ -100086,6 +109606,8 @@ components: semantic: SmallMolecule predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-PRECEDES-diap: @@ -100108,6 +109630,8 @@ components: semantic: Procedure predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PREVENTS-patf: @@ -100128,8 +109652,10 @@ components: outputs: - id: UMLS semantic: PathologicalProcess - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PREVENTS-patf-rev: @@ -100150,8 +109676,10 @@ components: outputs: - id: UMLS semantic: Gene - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orga-MANIFESTATION_OF-phsf: @@ -100174,6 +109702,8 @@ components: semantic: PhysiologicalProcess predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-AFFECTS-emod-rev: @@ -100196,6 +109726,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' patf-AFFECTS-fngs: @@ -100218,6 +109750,8 @@ components: semantic: Fungus predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-AFFECTS-fngs-rev: @@ -100240,6 +109774,8 @@ components: semantic: PathologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' clnd-CAUSES-inpo: @@ -100262,6 +109798,8 @@ components: semantic: PathologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' lipd-TREATS-sosy-rev: @@ -100282,8 +109820,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_umls-INTERACTS_WITH-horm_ncbigene: @@ -100306,6 +109846,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' medd-USES-aapp: @@ -100328,6 +109870,8 @@ components: semantic: Polypeptide predicate: has_input source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' medd-USES-aapp-rev: @@ -100350,6 +109894,8 @@ components: semantic: Device predicate: is_input_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' irda_umls-INTERACTS_WITH-gngm_ncbigene: @@ -100372,6 +109918,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' bacs-PART_OF-bacs: @@ -100394,6 +109942,8 @@ components: semantic: SmallMolecule predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-INHIBITS-lipd: @@ -100416,6 +109966,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -100442,6 +109994,8 @@ components: semantic: BiologicalEntity predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-INTERACTS_WITH-imft-rev: @@ -100464,6 +110018,8 @@ components: semantic: Protein predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-INHIBITS-ortf-rev: @@ -100486,6 +110042,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -100512,6 +110070,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -100538,6 +110098,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-CAUSES-sosy_umls-rev: @@ -100560,6 +110122,8 @@ components: semantic: Gene predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' bacs-TREATS-sosy-rev: @@ -100580,8 +110144,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-PREVENTS-mobd_umls: @@ -100602,8 +110168,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inch-TREATS-sosy-rev: @@ -100624,8 +110192,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' irda-COEXISTS_WITH-bacs: @@ -100648,6 +110218,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-TREATS-patf_umls-rev: @@ -100668,8 +110240,10 @@ components: outputs: - id: NCBIGene semantic: Gene - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' antb-COEXISTS_WITH-imft-rev: @@ -100692,6 +110266,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-INTERACTS_WITH-bodm-rev: @@ -100714,6 +110290,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-CONVERTS_TO-imft_umls-rev: @@ -100736,6 +110314,8 @@ components: semantic: Gene predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' aapp_ncbigene-STIMULATES-rcpt_umls: @@ -100758,6 +110338,8 @@ components: semantic: Protein predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -100784,6 +110366,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -100808,8 +110392,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-USES-opco: @@ -100832,6 +110418,8 @@ components: semantic: SmallMolecule predicate: has_input source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-AFFECTS-cgab_umls: @@ -100854,6 +110442,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-AFFECTS-cell: @@ -100876,6 +110466,8 @@ components: semantic: Cell predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-AFFECTS-cell-rev: @@ -100898,6 +110490,8 @@ components: semantic: NucleicAcidEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-same_as-phsu: @@ -100920,6 +110514,8 @@ components: semantic: SmallMolecule predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' enzy-AFFECTS-moft-rev: @@ -100942,6 +110538,8 @@ components: semantic: Protein predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-PART_OF-bpoc-rev: @@ -100964,6 +110562,8 @@ components: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-INHIBITS-nusq: @@ -100986,6 +110586,8 @@ components: semantic: NucleicAcidEntity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -101012,6 +110614,8 @@ components: semantic: Polypeptide predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -101038,6 +110642,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -101064,6 +110670,8 @@ components: semantic: Disease predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu_ncbigene-STIMULATES-gngm_ncbigene-rev: @@ -101086,6 +110694,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -101112,6 +110722,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PRODUCES-phsu: @@ -101134,6 +110746,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' enzy-PART_OF-cell-rev: @@ -101156,6 +110770,8 @@ components: semantic: Protein predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-TREATS-patf-rev: @@ -101176,8 +110792,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' mobd-COEXISTS_WITH-fndg-rev: @@ -101200,6 +110818,8 @@ components: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-AUGMENTS-sosy-rev: @@ -101222,6 +110842,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -101248,6 +110870,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' imft-same_as-imft: @@ -101270,6 +110894,8 @@ components: semantic: BiologicalEntity predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-same_as-imft-rev: @@ -101292,6 +110918,8 @@ components: semantic: BiologicalEntity predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' anst-PART_OF-aggp-rev: @@ -101314,6 +110942,8 @@ components: semantic: AnatomicalEntity predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-INHIBITS-imft_umls: @@ -101336,6 +110966,8 @@ components: semantic: BiologicalEntity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -101362,6 +110994,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -101388,6 +111022,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -101414,6 +111050,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' antb-ADMINISTERED_TO-aggp-rev: @@ -101436,6 +111074,8 @@ components: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-PREDISPOSES-sosy-rev: @@ -101456,8 +111096,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-CAUSES-acab: @@ -101480,6 +111122,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-AUGMENTS-orgf: @@ -101502,6 +111146,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -101528,6 +111174,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orga-ASSOCIATED_WITH-cgab: @@ -101550,6 +111198,8 @@ components: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-COEXISTS_WITH-rcpt: @@ -101572,6 +111222,8 @@ components: semantic: Protein predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-COEXISTS_WITH-rcpt-rev: @@ -101594,6 +111246,8 @@ components: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-CONVERTS_TO-orch_umls: @@ -101616,6 +111270,8 @@ components: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' opco-INHIBITS-aapp-rev: @@ -101638,6 +111294,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -101664,6 +111322,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orga-MANIFESTATION_OF-ortf: @@ -101686,6 +111346,8 @@ components: semantic: PhysiologicalProcess predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-COEXISTS_WITH-irda: @@ -101708,6 +111370,8 @@ components: semantic: DiagnosticAid predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-COEXISTS_WITH-irda-rev: @@ -101730,6 +111394,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp_umls-PRECEDES-aapp_ncbigene: @@ -101752,6 +111418,8 @@ components: semantic: Gene predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' topp_umls-PRECEDES-aapp_ncbigene-rev: @@ -101774,6 +111442,8 @@ components: semantic: Procedure predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-INHIBITS-elii: @@ -101796,6 +111466,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -101822,6 +111494,8 @@ components: semantic: Bacterium predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' anst-LOCATION_OF-bact-rev: @@ -101844,6 +111518,8 @@ components: semantic: AnatomicalEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-DISRUPTS-celc-rev: @@ -101866,6 +111542,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' elii-COEXISTS_WITH-enzy: @@ -101888,6 +111566,8 @@ components: semantic: Protein predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell_umls-LOCATION_OF-horm_ncbigene: @@ -101910,6 +111590,8 @@ components: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' rcpt-INHIBITS-bacs: @@ -101932,6 +111614,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -101958,6 +111642,8 @@ components: semantic: Protein predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -101984,6 +111670,8 @@ components: semantic: SmallMolecule predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-PREDISPOSES-sosy-rev: @@ -102004,8 +111692,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-DISRUPTS-emst: @@ -102028,6 +111718,8 @@ components: semantic: GrossAnatomicalStructure predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nnon-AUGMENTS-moft-rev: @@ -102050,6 +111742,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -102076,6 +111770,8 @@ components: semantic: Protein predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' moft-AFFECTS-bacs: @@ -102098,6 +111794,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' moft-AFFECTS-bacs-rev: @@ -102120,6 +111818,8 @@ components: semantic: MolecularActivity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' eico-DISRUPTS-bpoc-rev: @@ -102142,6 +111842,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu-STIMULATES-nusq-rev: @@ -102164,6 +111866,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -102190,6 +111894,8 @@ components: semantic: GrossAnatomicalStructure predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-PRODUCES-imft-rev: @@ -102212,6 +111918,8 @@ components: semantic: GrossAnatomicalStructure predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-PART_OF-celc-rev: @@ -102234,6 +111942,8 @@ components: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd-PART_OF-aggp-rev: @@ -102256,6 +111966,8 @@ components: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell_umls-LOCATION_OF-bacs_ncbigene: @@ -102278,6 +111990,8 @@ components: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' lipd-PREVENTS-dsyn-rev: @@ -102298,8 +112012,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsf-ASSOCIATED_WITH-aapp: @@ -102322,6 +112038,8 @@ components: semantic: Polypeptide predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsf-ASSOCIATED_WITH-aapp-rev: @@ -102344,6 +112062,8 @@ components: semantic: PhysiologicalProcess predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' anab-CAUSES-dsyn-rev: @@ -102363,9 +112083,11 @@ components: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-INTERACTS_WITH-rcpt: @@ -102388,6 +112110,8 @@ components: semantic: Protein predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-INTERACTS_WITH-rcpt-rev: @@ -102410,6 +112134,8 @@ components: semantic: BiologicalEntity predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-AFFECTS-moft-rev: @@ -102432,6 +112158,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orgf-ASSOCIATED_WITH-cgab: @@ -102454,6 +112182,8 @@ components: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' eico-AUGMENTS-celc-rev: @@ -102476,6 +112206,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -102502,6 +112234,8 @@ components: semantic: Gene predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' tisu-LOCATION_OF-sosy-rev: @@ -102524,6 +112258,8 @@ components: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' elii-DISRUPTS-tisu-rev: @@ -102546,6 +112282,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-ADMINISTERED_TO-emod: @@ -102568,6 +112306,8 @@ components: semantic: BiologicalEntity predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-ADMINISTERED_TO-emod-rev: @@ -102590,6 +112330,8 @@ components: semantic: BiologicalEntity predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' fndg-ASSOCIATED_WITH-dsyn: @@ -102612,6 +112354,8 @@ components: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fndg-ASSOCIATED_WITH-dsyn-rev: @@ -102634,6 +112378,8 @@ components: semantic: DiseaseOrPhenotypicFeature predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-INHIBITS-orch: @@ -102656,6 +112402,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -102682,6 +112430,8 @@ components: semantic: MolecularActivity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-COEXISTS_WITH-moft-rev: @@ -102704,6 +112454,8 @@ components: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' ortf-PRODUCES-aapp-rev: @@ -102726,6 +112478,8 @@ components: semantic: PhysiologicalProcess predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-STIMULATES-antb: @@ -102748,6 +112502,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -102774,6 +112530,8 @@ components: semantic: Gene predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' topp-COEXISTS_WITH-diap: @@ -102796,6 +112554,8 @@ components: semantic: Procedure predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-COEXISTS_WITH-diap-rev: @@ -102818,6 +112578,8 @@ components: semantic: Procedure predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt_ncbigene-DISRUPTS-ortf_umls-rev: @@ -102840,6 +112602,8 @@ components: semantic: Gene predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' bacs_ncbigene-COEXISTS_WITH-aapp_umls-rev: @@ -102862,6 +112626,8 @@ components: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' eico-CONVERTS_TO-gngm-rev: @@ -102884,6 +112650,8 @@ components: semantic: SmallMolecule predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' clnd-TREATS-anab: @@ -102903,11 +112671,37 @@ components: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease - predicate: treats + semantic: PhenotypicFeature + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' + clnd-TREATS-anab-rev: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: object.umls + parameters: + fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:clnd AND _exists_:subject.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Drug + predicate: subject_of_treatment_application_or_study_for_treatment_by + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' elii-AUGMENTS-sosy-rev: - supportBatch: True useTemplating: True @@ -102928,6 +112722,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -102954,6 +112750,8 @@ components: semantic: Gene predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' carb-COEXISTS_WITH-rcpt-rev: @@ -102976,6 +112774,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-CONVERTS_TO-antb: @@ -102998,6 +112798,8 @@ components: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-INTERACTS_WITH-elii: @@ -103020,6 +112822,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' eico-AFFECTS-celc-rev: @@ -103042,6 +112846,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' fngs-LOCATION_OF-opco: @@ -103064,6 +112870,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-AFFECTS-anst-rev: @@ -103086,6 +112894,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nnon-PREVENTS-patf-rev: @@ -103106,8 +112916,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nnon-TREATS-patf-rev: @@ -103128,8 +112940,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-INHIBITS-nusq-rev: @@ -103152,6 +112966,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -103178,6 +112994,8 @@ components: semantic: SmallMolecule predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cgab-PREDISPOSES-neop-rev: @@ -103198,8 +113016,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' elii-AFFECTS-anst-rev: @@ -103222,6 +113042,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-same_as-gngm: @@ -103244,6 +113066,8 @@ components: semantic: Gene predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-same_as-gngm-rev: @@ -103266,6 +113090,8 @@ components: semantic: Gene predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celc-LOCATION_OF-irda: @@ -103288,6 +113114,8 @@ components: semantic: DiagnosticAid predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-LOCATION_OF-irda-rev: @@ -103310,6 +113138,8 @@ components: semantic: CellularComponent predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd-COEXISTS_WITH-nusq-rev: @@ -103332,6 +113162,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-TREATS-sosy-rev: @@ -103352,8 +113184,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' food-CAUSES-anab: @@ -103373,11 +113207,37 @@ components: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' + food-CAUSES-anab-rev: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: object.umls + parameters: + fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:CAUSES AND subject.semantic_type_abbreviation:food AND _exists_:subject.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Food + predicate: caused_by + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-CONVERTS_TO-nusq: - supportBatch: True useTemplating: True @@ -103398,6 +113258,8 @@ components: semantic: NucleicAcidEntity predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-CONVERTS_TO-nusq-rev: @@ -103420,6 +113282,8 @@ components: semantic: Polypeptide predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' virs-LOCATION_OF-inch: @@ -103442,6 +113306,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' comd_umls-PRODUCES-bacs_ncbigene: @@ -103464,6 +113330,8 @@ components: semantic: Gene predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' comd_umls-PRODUCES-bacs_ncbigene-rev: @@ -103486,6 +113354,8 @@ components: semantic: Disease predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc-LOCATION_OF-ortf-rev: @@ -103508,6 +113378,8 @@ components: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' antb-DISRUPTS-bpoc-rev: @@ -103530,6 +113402,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' antb-COEXISTS_WITH-nusq-rev: @@ -103552,6 +113426,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' acab-MANIFESTATION_OF-patf-rev: @@ -103574,6 +113450,8 @@ components: semantic: Disease predicate: has_manifestation source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-COEXISTS_WITH-orch: @@ -103596,6 +113474,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' strd-DISRUPTS-sosy-rev: @@ -103618,8 +113498,34 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' + sbst-CAUSES-cgab: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: ChemicalEntity + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:CAUSES AND object.semantic_type_abbreviation:cgab AND _exists_:object.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Disease + predicate: causes + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' fngs-INTERACTS_WITH-virs: - supportBatch: True useTemplating: True @@ -103640,6 +113546,8 @@ components: semantic: Virus predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fngs-INTERACTS_WITH-virs-rev: @@ -103662,6 +113570,8 @@ components: semantic: Fungus predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-PART_OF-anab_umls: @@ -103681,11 +113591,37 @@ components: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' + aapp_ncbigene-PART_OF-anab_umls-rev: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: object.umls + parameters: + fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:PART_OF AND subject.semantic_type_abbreviation:aapp AND _exists_:subject.ncbigene + AND pmid_count:>3 + outputs: + - id: NCBIGene + semantic: Gene + predicate: has_part + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' celf-PRODUCES-rcpt: - supportBatch: True useTemplating: True @@ -103706,6 +113642,8 @@ components: semantic: Protein predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-COMPLICATES-anab: @@ -103725,11 +113663,37 @@ components: _exists_:object.umls AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease - predicate: exacerbates + semantic: PhenotypicFeature + predicate: exacerbates_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' + patf-COMPLICATES-anab-rev: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: object.umls + parameters: + fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:COMPLICATES AND subject.semantic_type_abbreviation:patf AND + _exists_:subject.umls AND pmid_count:>3 + outputs: + - id: UMLS + semantic: PathologicalProcess + predicate: condition_exacerbated_by + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-COEXISTS_WITH-lipd: - supportBatch: True useTemplating: True @@ -103750,6 +113714,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' dsyn-COEXISTS_WITH-emod-rev: @@ -103772,6 +113738,8 @@ components: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' celc-PRODUCES-gngm: @@ -103794,6 +113762,8 @@ components: semantic: Gene predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-PRODUCES-gngm-rev: @@ -103816,6 +113786,8 @@ components: semantic: CellularComponent predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-INHIBITS-irda: @@ -103838,6 +113810,8 @@ components: semantic: DiagnosticAid predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -103864,6 +113838,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -103890,6 +113866,8 @@ components: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' aapp-STIMULATES-opco: @@ -103912,6 +113890,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -103938,6 +113918,8 @@ components: semantic: Cell predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -103964,6 +113946,8 @@ components: semantic: BiologicalEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -103987,9 +113971,11 @@ components: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-INHIBITS-enzy: @@ -104012,12 +113998,38 @@ components: semantic: Protein predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: qualified_predicate: causes object_aspect_qualifier: activity_or_abundance object_direction_qualifier: decreased + anab-AFFECTS-phsf: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:phsf AND _exists_:object.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: PhysiologicalProcess + predicate: affects + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' nsba_ncbigene-DISRUPTS-ortf_umls-rev: - supportBatch: True useTemplating: True @@ -104038,6 +114050,8 @@ components: semantic: Gene predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' vita-AFFECTS-moft-rev: @@ -104060,6 +114074,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-same_as-horm: @@ -104082,6 +114098,8 @@ components: semantic: SmallMolecule predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' horm-same_as-horm-rev: @@ -104104,6 +114122,8 @@ components: semantic: SmallMolecule predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-CAUSES-phsf: @@ -104126,6 +114146,8 @@ components: semantic: PhysiologicalProcess predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-COMPLICATES-patf: @@ -104146,8 +114168,10 @@ components: outputs: - id: UMLS semantic: PathologicalProcess - predicate: exacerbates + predicate: exacerbates_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-COMPLICATES-patf-rev: @@ -104168,8 +114192,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: is_exacerbated_by + predicate: condition_exacerbated_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cell-LOCATION_OF-nnon: @@ -104192,6 +114218,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celf-AFFECTS-gngm: @@ -104214,6 +114242,8 @@ components: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celf-AFFECTS-gngm-rev: @@ -104236,6 +114266,8 @@ components: semantic: PhysiologicalProcess predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-PREDISPOSES-sosy_umls-rev: @@ -104256,8 +114288,10 @@ components: outputs: - id: NCBIGene semantic: Gene - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' cell-LOCATION_OF-enzy: @@ -104280,6 +114314,8 @@ components: semantic: Protein predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cell-LOCATION_OF-enzy-rev: @@ -104302,6 +114338,8 @@ components: semantic: Cell predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-DISRUPTS-moft-rev: @@ -104324,6 +114362,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-INTERACTS_WITH-rcpt-rev: @@ -104346,6 +114386,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' mobd-COMPLICATES-dsyn-rev: @@ -104366,8 +114408,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: is_exacerbated_by + predicate: condition_exacerbated_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-STIMULATES-moft-rev: @@ -104390,6 +114434,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -104414,8 +114460,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-STIMULATES-rcpt_umls-rev: @@ -104438,6 +114486,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -104462,8 +114512,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-INHIBITS-ortf_umls-rev: @@ -104486,6 +114538,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -104509,9 +114563,11 @@ components: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-PRODUCES-gngm_umls-rev: @@ -104534,6 +114590,8 @@ components: semantic: Gene predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' patf_umls-PRODUCES-aapp_ncbigene: @@ -104556,6 +114614,8 @@ components: semantic: Gene predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' gngm_ncbigene-CONVERTS_TO-gngm_ncbigene-rev: @@ -104578,6 +114638,8 @@ components: semantic: Gene predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' eico-same_as-eico: @@ -104600,6 +114662,8 @@ components: semantic: SmallMolecule predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' eico-same_as-eico-rev: @@ -104622,6 +114686,8 @@ components: semantic: SmallMolecule predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-PRODUCES-opco: @@ -104644,6 +114710,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-COMPLICATES-patf: @@ -104664,8 +114732,10 @@ components: outputs: - id: UMLS semantic: PathologicalProcess - predicate: exacerbates + predicate: exacerbates_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-COMPLICATES-patf-rev: @@ -104686,8 +114756,10 @@ components: outputs: - id: UMLS semantic: Polypeptide - predicate: is_exacerbated_by + predicate: condition_exacerbated_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' neop-PRODUCES-rcpt: @@ -104710,6 +114782,8 @@ components: semantic: Protein predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' neop-PRODUCES-rcpt-rev: @@ -104732,6 +114806,8 @@ components: semantic: Disease predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-AFFECTS-anab: @@ -104751,9 +114827,11 @@ components: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-AUGMENTS-cgab: @@ -104776,6 +114854,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -104802,6 +114882,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -104828,6 +114910,8 @@ components: semantic: SmallMolecule predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' mobd-COMPLICATES-mobd: @@ -104848,8 +114932,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: exacerbates + predicate: exacerbates_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' carb-DISRUPTS-bpoc-rev: @@ -104872,6 +114958,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' sosy-ASSOCIATED_WITH-sosy: @@ -104894,6 +114982,8 @@ components: semantic: PhenotypicFeature predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' sosy-ASSOCIATED_WITH-sosy-rev: @@ -104916,6 +115006,8 @@ components: semantic: PhenotypicFeature predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsf-ASSOCIATED_WITH-nsba: @@ -104938,6 +115030,8 @@ components: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-AUGMENTS-comd: @@ -104960,6 +115054,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -104986,6 +115082,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' fngs-LOCATION_OF-nnon: @@ -105008,6 +115106,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nsba-STIMULATES-imft-rev: @@ -105030,6 +115130,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -105056,6 +115158,8 @@ components: semantic: NucleicAcidEntity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -105082,6 +115186,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -105108,6 +115214,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bodm-INTERACTS_WITH-rcpt: @@ -105130,6 +115238,8 @@ components: semantic: Protein predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bodm-INTERACTS_WITH-rcpt-rev: @@ -105152,6 +115262,8 @@ components: semantic: Device predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-AUGMENTS-neop: @@ -105174,6 +115286,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -105200,6 +115314,8 @@ components: semantic: NucleicAcidEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -105226,6 +115342,8 @@ components: semantic: Protein predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-STIMULATES-nsba: @@ -105248,6 +115366,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -105274,6 +115394,8 @@ components: semantic: Disease predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bdsu-LOCATION_OF-enzy: @@ -105296,6 +115418,8 @@ components: semantic: Protein predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bdsu-LOCATION_OF-enzy-rev: @@ -105318,6 +115442,8 @@ components: semantic: AnatomicalEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' dsyn-CAUSES-cgab: @@ -105340,6 +115466,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PRODUCES-nnon: @@ -105362,6 +115490,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cgab-PART_OF-virs-rev: @@ -105384,6 +115514,8 @@ components: semantic: Disease predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-COEXISTS_WITH-elii: @@ -105406,6 +115538,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nsba-AUGMENTS-cell-rev: @@ -105428,6 +115562,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -105454,6 +115590,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nnon-PREVENTS-virs-rev: @@ -105474,8 +115612,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' enzy-STIMULATES-gngm-rev: @@ -105498,6 +115638,8 @@ components: semantic: Protein predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -105524,6 +115666,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' nsba-ADMINISTERED_TO-cell-rev: @@ -105546,6 +115690,8 @@ components: semantic: SmallMolecule predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' opco-AUGMENTS-patf-rev: @@ -105568,6 +115714,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -105594,6 +115742,8 @@ components: semantic: PathologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' mobd-ASSOCIATED_WITH-dsyn-rev: @@ -105616,6 +115766,8 @@ components: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' eico-DISRUPTS-patf-rev: @@ -105638,6 +115790,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' clnd-PREVENTS-acab: @@ -105658,8 +115812,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-COEXISTS_WITH-inch: @@ -105682,6 +115838,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nsba-PART_OF-anst-rev: @@ -105704,6 +115862,8 @@ components: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-COEXISTS_WITH-nusq-rev: @@ -105726,6 +115886,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nnon-PREDISPOSES-neop-rev: @@ -105746,8 +115908,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-DISRUPTS-tisu-rev: @@ -105770,6 +115934,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu_ncbigene-TREATS-comd_umls: @@ -105790,8 +115956,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-TREATS-sosy: @@ -105812,8 +115980,10 @@ components: outputs: - id: UMLS semantic: PhenotypicFeature - predicate: treats + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-TREATS-sosy-rev: @@ -105834,8 +116004,10 @@ components: outputs: - id: UMLS semantic: BiologicalEntity - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-ADMINISTERED_TO-emod: @@ -105858,6 +116030,8 @@ components: semantic: BiologicalEntity predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-ADMINISTERED_TO-emod-rev: @@ -105880,6 +116054,8 @@ components: semantic: Protein predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-INTERACTS_WITH-phsu_ncbigene: @@ -105902,6 +116078,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' opco-INTERACTS_WITH-bodm-rev: @@ -105924,6 +116102,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' medd-PREVENTS-comd: @@ -105944,8 +116124,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' mobd-PRODUCES-tisu-rev: @@ -105968,6 +116150,8 @@ components: semantic: Disease predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-PRECEDES-hops: @@ -105990,6 +116174,8 @@ components: semantic: SmallMolecule predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-PRECEDES-antb: @@ -106012,6 +116198,8 @@ components: semantic: SmallMolecule predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-COEXISTS_WITH-nsba: @@ -106034,6 +116222,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-STIMULATES-cell-rev: @@ -106056,6 +116246,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -106082,6 +116274,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -106108,6 +116302,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-same_as-medd: @@ -106130,6 +116326,8 @@ components: semantic: Device predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-same_as-medd-rev: @@ -106152,6 +116350,8 @@ components: semantic: SmallMolecule predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu_ncbigene-AUGMENTS-celf_umls-rev: @@ -106174,6 +116374,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -106200,6 +116402,8 @@ components: semantic: Device predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bdsu-LOCATION_OF-bodm-rev: @@ -106222,6 +116426,8 @@ components: semantic: AnatomicalEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-PREVENTS-inpo-rev: @@ -106242,8 +116448,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PART_OF-nusq: @@ -106266,6 +116474,8 @@ components: semantic: NucleicAcidEntity predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PART_OF-nusq-rev: @@ -106288,6 +116498,8 @@ components: semantic: Polypeptide predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm_ncbigene-INTERACTS_WITH-horm_umls-rev: @@ -106310,6 +116522,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' bact-PRODUCES-hops: @@ -106332,6 +116546,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-PART_OF-fngs-rev: @@ -106354,6 +116570,8 @@ components: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-AUGMENTS-celf: @@ -106376,6 +116594,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -106402,6 +116622,8 @@ components: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' virs-LOCATION_OF-enzy: @@ -106424,6 +116646,8 @@ components: semantic: Protein predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' hops-AUGMENTS-cell-rev: @@ -106446,6 +116670,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -106472,6 +116698,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -106496,8 +116724,10 @@ components: outputs: - id: UMLS semantic: BiologicalEntity - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-PREVENTS-emod-rev: @@ -106518,8 +116748,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lbtr-MANIFESTATION_OF-inpo: @@ -106542,6 +116774,8 @@ components: semantic: PathologicalProcess predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' lbtr-MANIFESTATION_OF-inpo-rev: @@ -106564,6 +116798,8 @@ components: semantic: Phenomenon predicate: has_manifestation source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' ortf_umls-PRODUCES-horm_ncbigene-rev: @@ -106586,6 +116822,8 @@ components: semantic: PhysiologicalProcess predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' mobd-CAUSES-patf-rev: @@ -106608,6 +116846,8 @@ components: semantic: Disease predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-AUGMENTS-fndg: @@ -106630,6 +116870,8 @@ components: semantic: DiseaseOrPhenotypicFeature predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -106656,6 +116898,8 @@ components: semantic: NucleicAcidEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -106682,6 +116926,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -106708,6 +116954,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -106734,6 +116982,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -106760,6 +117010,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch_umls-INHIBITS-bacs_ncbigene: @@ -106782,6 +117034,8 @@ components: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: @@ -106808,6 +117062,8 @@ components: semantic: GrossAnatomicalStructure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PRODUCES-imft: @@ -106830,6 +117086,8 @@ components: semantic: BiologicalEntity predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-PRODUCES-imft-rev: @@ -106852,6 +117110,8 @@ components: semantic: Polypeptide predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-same_as-aapp: @@ -106874,6 +117134,8 @@ components: semantic: Polypeptide predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-same_as-aapp-rev: @@ -106896,6 +117158,8 @@ components: semantic: SmallMolecule predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-AUGMENTS-dsyn: @@ -106918,6 +117182,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -106944,6 +117210,8 @@ components: semantic: Protein predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -106970,6 +117238,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -106996,6 +117266,8 @@ components: semantic: Device predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-PRECEDES-medd-rev: @@ -107018,6 +117290,8 @@ components: semantic: Procedure predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-ASSOCIATED_WITH-patf: @@ -107040,6 +117314,8 @@ components: semantic: PathologicalProcess predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-ASSOCIATED_WITH-patf-rev: @@ -107062,6 +117338,8 @@ components: semantic: Protein predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-COEXISTS_WITH-nusq-rev: @@ -107084,6 +117362,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' plnt-LOCATION_OF-nnon: @@ -107106,6 +117386,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' eico-AUGMENTS-mobd-rev: @@ -107128,6 +117410,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -107154,6 +117438,8 @@ components: semantic: Gene predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' bacs_umls-CONVERTS_TO-gngm_ncbigene-rev: @@ -107176,6 +117462,8 @@ components: semantic: SmallMolecule predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-AFFECTS-sosy-rev: @@ -107198,6 +117486,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-INTERACTS_WITH-irda: @@ -107220,6 +117510,8 @@ components: semantic: DiagnosticAid predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-INTERACTS_WITH-irda-rev: @@ -107242,6 +117534,8 @@ components: semantic: BiologicalEntity predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-CAUSES-celf-rev: @@ -107264,6 +117558,8 @@ components: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-INHIBITS-hops: @@ -107286,6 +117582,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -107312,6 +117610,8 @@ components: semantic: Gene predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' gngm-AUGMENTS-sosy: @@ -107334,6 +117634,8 @@ components: semantic: PhenotypicFeature predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -107360,6 +117662,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -107386,6 +117690,8 @@ components: semantic: SmallMolecule predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' enzy_umls-INHIBITS-gngm_ncbigene-rev: @@ -107408,6 +117714,8 @@ components: semantic: Protein predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -107434,6 +117742,8 @@ components: semantic: Procedure predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-PRECEDES-topp-rev: @@ -107456,6 +117766,8 @@ components: semantic: BiologicalEntity predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-INHIBITS-inch: @@ -107478,6 +117790,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -107504,6 +117818,8 @@ components: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' neop-PRECEDES-patf-rev: @@ -107526,6 +117842,8 @@ components: semantic: Disease predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bpoc_umls-PRODUCES-gngm_ncbigene: @@ -107548,6 +117866,8 @@ components: semantic: Gene predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' nsba-AUGMENTS-celc-rev: @@ -107570,6 +117890,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -107594,8 +117916,10 @@ components: outputs: - id: UMLS semantic: PathologicalProcess - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-COMPLICATES-dsyn: @@ -107616,8 +117940,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: exacerbates + predicate: exacerbates_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-COMPLICATES-dsyn-rev: @@ -107638,8 +117964,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: is_exacerbated_by + predicate: condition_exacerbated_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu_ncbigene-STIMULATES-bacs_umls-rev: @@ -107662,6 +117990,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -107688,6 +118018,8 @@ components: semantic: Disease predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' lbtr-MANIFESTATION_OF-dsyn-rev: @@ -107710,6 +118042,8 @@ components: semantic: Phenomenon predicate: has_manifestation source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' biof-PRODUCES-horm: @@ -107732,6 +118066,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' enzy-ASSOCIATED_WITH-patf-rev: @@ -107754,6 +118090,8 @@ components: semantic: Protein predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-PART_OF-aapp: @@ -107776,6 +118114,8 @@ components: semantic: Polypeptide predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm-PART_OF-aapp-rev: @@ -107798,6 +118138,8 @@ components: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' elii-STIMULATES-nusq-rev: @@ -107820,6 +118162,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -107846,6 +118190,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs_ncbigene-INTERACTS_WITH-bacs_umls-rev: @@ -107868,6 +118214,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' tisu-LOCATION_OF-enzy-rev: @@ -107890,6 +118238,8 @@ components: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-same_as-topp: @@ -107912,6 +118262,8 @@ components: semantic: Procedure predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-same_as-topp-rev: @@ -107934,6 +118286,8 @@ components: semantic: SmallMolecule predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' neop-CAUSES-patf-rev: @@ -107956,6 +118310,8 @@ components: semantic: Disease predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-DISRUPTS-acab: @@ -107978,6 +118334,8 @@ components: semantic: Disease predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-COEXISTS_WITH-phsu: @@ -108000,6 +118358,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' sosy-ASSOCIATED_WITH-neop: @@ -108022,6 +118382,8 @@ components: semantic: Disease predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs_ncbigene-PART_OF-gngm_umls: @@ -108044,6 +118406,8 @@ components: semantic: Gene predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs_ncbigene-PART_OF-gngm_umls-rev: @@ -108066,6 +118430,8 @@ components: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' rcpt-AFFECTS-cell: @@ -108088,6 +118454,8 @@ components: semantic: Cell predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-AFFECTS-cell-rev: @@ -108110,6 +118478,8 @@ components: semantic: Protein predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-STIMULATES-nusq_umls-rev: @@ -108132,6 +118502,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -108158,6 +118530,8 @@ components: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: @@ -108184,6 +118558,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' drdd-TREATS-dsyn-rev: @@ -108204,8 +118580,10 @@ components: outputs: - id: UMLS semantic: Device - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-AFFECTS-acab: @@ -108228,6 +118606,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' mobd-PROCESS_OF-plnt-rev: @@ -108250,6 +118630,8 @@ components: semantic: Disease predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-COEXISTS_WITH-horm: @@ -108272,6 +118654,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-LOCATION_OF-enzy: @@ -108294,6 +118678,8 @@ components: semantic: Protein predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-LOCATION_OF-enzy-rev: @@ -108316,6 +118702,8 @@ components: semantic: CellularComponent predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-same_as-lipd: @@ -108338,6 +118726,8 @@ components: semantic: SmallMolecule predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' lipd-same_as-lipd-rev: @@ -108360,6 +118750,8 @@ components: semantic: SmallMolecule predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' clnd-CAUSES-comd: @@ -108382,6 +118774,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-COEXISTS_WITH-nnon: @@ -108404,6 +118798,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-COEXISTS_WITH-irda: @@ -108426,6 +118822,8 @@ components: semantic: DiagnosticAid predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-COEXISTS_WITH-irda-rev: @@ -108448,6 +118846,8 @@ components: semantic: Polypeptide predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orgf-PRODUCES-vita: @@ -108470,6 +118870,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' emod-COEXISTS_WITH-inpo: @@ -108492,6 +118894,8 @@ components: semantic: PathologicalProcess predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-CONVERTS_TO-eico_umls: @@ -108514,6 +118918,8 @@ components: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bpoc-LOCATION_OF-rcpt: @@ -108536,6 +118942,8 @@ components: semantic: Protein predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-INHIBITS-enzy-rev: @@ -108558,6 +118966,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -108584,6 +118994,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' imft-AUGMENTS-acab: @@ -108606,6 +119018,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -108632,6 +119046,8 @@ components: semantic: Polypeptide predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs-CONVERTS_TO-aapp-rev: @@ -108654,6 +119070,8 @@ components: semantic: SmallMolecule predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' emod-COEXISTS_WITH-emod: @@ -108676,6 +119094,8 @@ components: semantic: BiologicalEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' emod-COEXISTS_WITH-emod-rev: @@ -108698,6 +119118,8 @@ components: semantic: BiologicalEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bdsu-LOCATION_OF-opco: @@ -108720,6 +119142,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-COEXISTS_WITH-nnon: @@ -108742,6 +119166,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-COEXISTS_WITH-imft: @@ -108764,6 +119190,8 @@ components: semantic: BiologicalEntity predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-COEXISTS_WITH-imft-rev: @@ -108786,6 +119214,8 @@ components: semantic: Protein predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs_ncbigene-INHIBITS-bacs_umls-rev: @@ -108808,6 +119238,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -108831,9 +119263,11 @@ components: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft_ncbigene-DISRUPTS-ortf_umls-rev: @@ -108856,6 +119290,8 @@ components: semantic: Gene predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' fngs-LOCATION_OF-antb: @@ -108878,6 +119314,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-AFFECTS-tisu: @@ -108900,6 +119338,8 @@ components: semantic: GrossAnatomicalStructure predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bodm-INTERACTS_WITH-horm: @@ -108922,6 +119362,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bacs_ncbigene-COEXISTS_WITH-bacs_umls-rev: @@ -108944,6 +119386,8 @@ components: semantic: Gene predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' emst-LOCATION_OF-fngs-rev: @@ -108966,6 +119410,8 @@ components: semantic: GrossAnatomicalStructure predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' hops-AFFECTS-fndg-rev: @@ -108988,6 +119434,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp_ncbigene-PART_OF-aggp_umls-rev: @@ -109010,6 +119458,8 @@ components: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' neop-PRODUCES-vita: @@ -109032,6 +119482,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_umls-INHIBITS-bacs_ncbigene: @@ -109054,6 +119506,8 @@ components: semantic: Gene predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' qualifiers: @@ -109080,6 +119534,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -109106,6 +119562,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-DISRUPTS-phsf: @@ -109128,6 +119586,8 @@ components: semantic: PhysiologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' enzy-PART_OF-fngs: @@ -109150,6 +119610,8 @@ components: semantic: Fungus predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' enzy-PART_OF-fngs-rev: @@ -109172,6 +119634,8 @@ components: semantic: Protein predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-PRECEDES-bacs: @@ -109194,30 +119658,10 @@ components: semantic: SmallMolecule predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' - strd-CAUSES-sosy-rev: - - supportBatch: True - useTemplating: True - inputs: - - id: UMLS - semantic: PhenotypicFeature - requestBody: - body: - q: '{{ queryInputs }}' - scopes: object.umls - parameters: - fields: subject.umls,predication.pmid,predication.sentence,subject.name,object.name - size: 1000 - filter: predicate:CAUSES AND subject.semantic_type_abbreviation:strd AND _exists_:subject.umls - AND pmid_count:>3 - outputs: - - id: UMLS - semantic: SmallMolecule - predicate: caused_by - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-subj' vita-PREVENTS-inpo-rev: - supportBatch: True useTemplating: True @@ -109236,8 +119680,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu_ncbigene-PREVENTS-comd_umls: @@ -109258,8 +119704,10 @@ components: outputs: - id: UMLS semantic: Disease - predicate: prevents + predicate: preventative_for_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu_ncbigene-PREVENTS-comd_umls-rev: @@ -109280,8 +119728,10 @@ components: outputs: - id: NCBIGene semantic: Gene - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' aapp_ncbigene-PRECEDES-topp_umls: @@ -109304,6 +119754,8 @@ components: semantic: Procedure predicate: precedes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-PRECEDES-topp_umls-rev: @@ -109326,6 +119778,8 @@ components: semantic: Gene predicate: preceded_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' patf-PREDISPOSES-patf: @@ -109346,8 +119800,10 @@ components: outputs: - id: UMLS semantic: PathologicalProcess - predicate: predisposes + predicate: predisposes_to_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' patf-PREDISPOSES-patf-rev: @@ -109368,8 +119824,10 @@ components: outputs: - id: UMLS semantic: PathologicalProcess - predicate: has_predisposing_factor + predicate: condition_predisposed_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-CONVERTS_TO-orch: @@ -109392,6 +119850,8 @@ components: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-CONVERTS_TO-nusq: @@ -109414,6 +119874,8 @@ components: semantic: NucleicAcidEntity predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-CONVERTS_TO-nusq-rev: @@ -109436,6 +119898,8 @@ components: semantic: NucleicAcidEntity predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-DISRUPTS-inpo: @@ -109458,6 +119922,8 @@ components: semantic: PathologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' virs-LOCATION_OF-lipd: @@ -109480,6 +119946,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' phsu-PRODUCES-bacs-rev: @@ -109502,6 +119970,8 @@ components: semantic: SmallMolecule predicate: produced_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs_ncbigene-AFFECTS-celf_umls-rev: @@ -109524,6 +119994,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' opco-CAUSES-celf-rev: @@ -109546,6 +120018,8 @@ components: semantic: SmallMolecule predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lbtr-MANIFESTATION_OF-orgf: @@ -109568,6 +120042,8 @@ components: semantic: PhysiologicalProcess predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-COMPLICATES-inpo: @@ -109588,8 +120064,10 @@ components: outputs: - id: UMLS semantic: PathologicalProcess - predicate: exacerbates + predicate: exacerbates_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' diap-USES-imft-rev: @@ -109612,6 +120090,8 @@ components: semantic: Procedure predicate: is_input_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-DISRUPTS-sosy-rev: @@ -109634,6 +120114,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-CONVERTS_TO-inch_umls: @@ -109656,6 +120138,8 @@ components: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-ASSOCIATED_WITH-sosy: @@ -109678,6 +120162,8 @@ components: semantic: PhenotypicFeature predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-ASSOCIATED_WITH-sosy-rev: @@ -109700,6 +120186,8 @@ components: semantic: Protein predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-PREVENTS-inpo-rev: @@ -109720,8 +120208,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bacs-CONVERTS_TO-opco: @@ -109744,6 +120234,8 @@ components: semantic: SmallMolecule predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-INHIBITS-aapp: @@ -109766,6 +120258,8 @@ components: semantic: Polypeptide predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -109792,6 +120286,8 @@ components: semantic: Protein predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -109818,6 +120314,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-AUGMENTS-phsf: @@ -109840,6 +120338,8 @@ components: semantic: PhysiologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -109866,34 +120366,14 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: qualified_predicate: caused_by subject_aspect_qualifier: activity_or_abundance subject_direction_qualifier: increased - sosy-COEXISTS_WITH-cgab: - - supportBatch: True - useTemplating: True - inputs: - - id: UMLS - semantic: PhenotypicFeature - requestBody: - body: - q: '{{ queryInputs }}' - scopes: subject.umls - parameters: - fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name - size: 1000 - filter: predicate:COEXISTS_WITH AND object.semantic_type_abbreviation:cgab AND - _exists_:object.umls AND pmid_count:>3 - outputs: - - id: UMLS - semantic: Disease - predicate: coexists_with - source: "infores:semmeddb" - response_mapping: - $ref: '#/components/x-bte-response-mapping/umls-obj' horm-COEXISTS_WITH-rcpt-rev: - supportBatch: True useTemplating: True @@ -109914,6 +120394,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-INHIBITS-rcpt: @@ -109936,6 +120418,8 @@ components: semantic: Protein predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -109962,6 +120446,8 @@ components: semantic: NucleicAcidEntity predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -109988,6 +120474,8 @@ components: semantic: DiagnosticAid predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' plnt-LOCATION_OF-irda-rev: @@ -110010,6 +120498,8 @@ components: semantic: Plant predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lipd-AUGMENTS-moft-rev: @@ -110032,6 +120522,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -110056,8 +120548,10 @@ components: outputs: - id: NCBIGene semantic: Gene - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' aapp_ncbigene-CONVERTS_TO-aapp_umls: @@ -110080,6 +120574,8 @@ components: semantic: Polypeptide predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-CONVERTS_TO-aapp_umls-rev: @@ -110102,6 +120598,8 @@ components: semantic: Gene predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' celc_umls-LOCATION_OF-bacs_ncbigene: @@ -110124,6 +120622,8 @@ components: semantic: Gene predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-obj' bacs-AUGMENTS-biof-rev: @@ -110146,6 +120646,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -110172,6 +120674,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bact-INTERACTS_WITH-gngm-rev: @@ -110194,6 +120698,8 @@ components: semantic: Bacterium predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nsba-INTERACTS_WITH-imft-rev: @@ -110216,6 +120722,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-PRODUCES-strd: @@ -110238,6 +120746,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inch-TREATS-patf-rev: @@ -110258,8 +120768,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: treated_by + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' irda-DISRUPTS-orgf: @@ -110282,6 +120794,8 @@ components: semantic: PhysiologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' irda-DISRUPTS-orgf-rev: @@ -110304,6 +120818,8 @@ components: semantic: DiagnosticAid predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' phsu_ncbigene-INTERACTS_WITH-aapp_ncbigene-rev: @@ -110326,6 +120842,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' elii-same_as-elii: @@ -110348,6 +120866,8 @@ components: semantic: SmallMolecule predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' elii-same_as-elii-rev: @@ -110370,6 +120890,8 @@ components: semantic: SmallMolecule predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orch-INHIBITS-opco: @@ -110392,6 +120914,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -110418,6 +120942,8 @@ components: semantic: Disease predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' strd-COEXISTS_WITH-imft-rev: @@ -110440,6 +120966,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-PART_OF-aapp_umls-rev: @@ -110462,6 +120990,8 @@ components: semantic: Gene predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' celc-PART_OF-aggp: @@ -110484,6 +121014,8 @@ components: semantic: Cohort predicate: part_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celc-PART_OF-aggp-rev: @@ -110506,6 +121038,8 @@ components: semantic: CellularComponent predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' orgf-PRODUCES-orch: @@ -110528,6 +121062,8 @@ components: semantic: SmallMolecule predicate: produces source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celf-PROCESS_OF-cell: @@ -110550,6 +121086,8 @@ components: semantic: Cell predicate: occurs_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' celf-PROCESS_OF-cell-rev: @@ -110572,6 +121110,8 @@ components: semantic: PhysiologicalProcess predicate: contains_process source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' cgab-COEXISTS_WITH-emod-rev: @@ -110594,6 +121134,8 @@ components: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-COEXISTS_WITH-horm: @@ -110616,6 +121158,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' cgab-COEXISTS_WITH-fndg-rev: @@ -110638,6 +121182,8 @@ components: semantic: Disease predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-DISRUPTS-anst: @@ -110660,6 +121206,8 @@ components: semantic: AnatomicalEntity predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' inch-DISRUPTS-anst-rev: @@ -110682,6 +121230,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft_ncbigene-ASSOCIATED_WITH-neop_umls-rev: @@ -110704,6 +121254,8 @@ components: semantic: Gene predicate: related_to source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' strd-CONVERTS_TO-horm-rev: @@ -110726,6 +121278,8 @@ components: semantic: SmallMolecule predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' fngs-LOCATION_OF-eico: @@ -110748,6 +121302,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bact-CAUSES-mobd: @@ -110770,6 +121326,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' clnd-CAUSES-acab: @@ -110792,6 +121350,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp_ncbigene-INHIBITS-nusq_umls: @@ -110814,6 +121374,8 @@ components: semantic: NucleicAcidEntity predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -110840,6 +121402,8 @@ components: semantic: Gene predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' qualifiers: @@ -110866,6 +121430,8 @@ components: semantic: Gene predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' irda-DISRUPTS-celf: @@ -110888,6 +121454,8 @@ components: semantic: PhysiologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-CAUSES-biof: @@ -110910,6 +121478,8 @@ components: semantic: Phenomenon predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-CAUSES-biof-rev: @@ -110932,6 +121502,8 @@ components: semantic: Polypeptide predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' horm-INHIBITS-fndg-rev: @@ -110954,6 +121526,8 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -110980,6 +121554,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -111004,8 +121580,10 @@ components: outputs: - id: UMLS semantic: PhenotypicFeature - predicate: exacerbates + predicate: exacerbates_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' fndg-COMPLICATES-sosy-rev: @@ -111026,8 +121604,10 @@ components: outputs: - id: UMLS semantic: DiseaseOrPhenotypicFeature - predicate: is_exacerbated_by + predicate: condition_exacerbated_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' rcpt-AFFECTS-patf: @@ -111050,6 +121630,8 @@ components: semantic: PathologicalProcess predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-AFFECTS-patf-rev: @@ -111072,6 +121654,8 @@ components: semantic: Protein predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nsba-COEXISTS_WITH-rcpt-rev: @@ -111094,6 +121678,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' topp-COMPLICATES-orgf: @@ -111114,8 +121700,10 @@ components: outputs: - id: UMLS semantic: PhysiologicalProcess - predicate: exacerbates + predicate: exacerbates_condition source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' topp-COMPLICATES-orgf-rev: @@ -111136,8 +121724,10 @@ components: outputs: - id: UMLS semantic: Procedure - predicate: is_exacerbated_by + predicate: condition_exacerbated_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-COEXISTS_WITH-nusq-rev: @@ -111160,6 +121750,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' imft-COEXISTS_WITH-antb: @@ -111182,6 +121774,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' bact-LOCATION_OF-horm: @@ -111204,6 +121798,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-COMPLICATES-dsyn-rev: @@ -111224,8 +121820,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: is_exacerbated_by + predicate: condition_exacerbated_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-STIMULATES-nnon: @@ -111248,6 +121846,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -111274,6 +121874,8 @@ components: semantic: PhenotypicFeature predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-CAUSES-sosy-rev: @@ -111296,6 +121898,8 @@ components: semantic: Protein predicate: caused_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' medd-same_as-orch: @@ -111318,6 +121922,8 @@ components: semantic: SmallMolecule predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' medd-same_as-orch-rev: @@ -111340,6 +121946,8 @@ components: semantic: Device predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm-AFFECTS-mobd: @@ -111362,6 +121970,8 @@ components: semantic: Disease predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' orch-DISRUPTS-cgab: @@ -111384,6 +121994,8 @@ components: semantic: Disease predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' horm-DISRUPTS-sosy-rev: @@ -111406,6 +122018,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-DISRUPTS-moft-rev: @@ -111428,6 +122042,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-COEXISTS_WITH-carb: @@ -111450,6 +122066,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' antb-INTERACTS_WITH-rcpt-rev: @@ -111472,6 +122090,8 @@ components: semantic: SmallMolecule predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' inch-PART_OF-celc-rev: @@ -111494,6 +122114,8 @@ components: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' lbtr-MANIFESTATION_OF-phsf: @@ -111516,6 +122138,8 @@ components: semantic: PhysiologicalProcess predicate: manifestation_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' anst-LOCATION_OF-nusq: @@ -111538,6 +122162,8 @@ components: semantic: NucleicAcidEntity predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' anst-LOCATION_OF-nusq-rev: @@ -111560,6 +122186,8 @@ components: semantic: AnatomicalEntity predicate: located_in source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' eico-PREVENTS-dsyn-rev: @@ -111580,8 +122208,10 @@ components: outputs: - id: UMLS semantic: SmallMolecule - predicate: prevented_by + predicate: condition_prevented_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' emst-PART_OF-aggp-rev: @@ -111604,6 +122234,8 @@ components: semantic: GrossAnatomicalStructure predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' nusq-DISRUPTS-orgf: @@ -111626,6 +122258,8 @@ components: semantic: PhysiologicalProcess predicate: disrupts source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nusq-DISRUPTS-orgf-rev: @@ -111648,6 +122282,8 @@ components: semantic: NucleicAcidEntity predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' enzy-INTERACTS_WITH-irda-rev: @@ -111670,6 +122306,8 @@ components: semantic: Protein predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' enzy_umls-INTERACTS_WITH-aapp_ncbigene-rev: @@ -111692,8 +122330,34 @@ components: semantic: Protein predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' + anab-AFFECTS-bact: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: subject.umls + parameters: + fields: object.umls,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:AFFECTS AND object.semantic_type_abbreviation:bact AND _exists_:object.umls + AND pmid_count:>3 + outputs: + - id: UMLS + semantic: Bacterium + predicate: affects + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/umls-obj' anab-AFFECTS-bact-rev: - supportBatch: True useTemplating: True @@ -111711,9 +122375,11 @@ components: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease + semantic: PhenotypicFeature predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' medd-USES-carb: @@ -111736,6 +122402,8 @@ components: semantic: SmallMolecule predicate: has_input source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' nsba-DISRUPTS-celc-rev: @@ -111758,6 +122426,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' bdsu-CAUSES-cgab: @@ -111780,6 +122450,8 @@ components: semantic: Disease predicate: causes source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' irda-INHIBITS-inch: @@ -111802,6 +122474,8 @@ components: semantic: SmallMolecule predicate: affects source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' qualifiers: @@ -111828,6 +122502,8 @@ components: semantic: DiagnosticAid predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' qualifiers: @@ -111851,11 +122527,37 @@ components: AND pmid_count:>3 outputs: - id: UMLS - semantic: Disease - predicate: treats + semantic: PhenotypicFeature + predicate: treats_or_applied_or_studied_to_treat source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' + horm_ncbigene-TREATS-anab_umls-rev: + - supportBatch: True + useTemplating: True + inputs: + - id: UMLS + semantic: PhenotypicFeature + requestBody: + body: + q: '{{ queryInputs }}' + scopes: object.umls + parameters: + fields: subject.ncbigene,predication.pmid,predication.sentence,subject.name,object.name + size: 1000 + filter: predicate:TREATS AND subject.semantic_type_abbreviation:horm AND _exists_:subject.ncbigene + AND pmid_count:>3 + outputs: + - id: NCBIGene + semantic: Gene + predicate: subject_of_treatment_application_or_study_for_treatment_by + source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent + response_mapping: + $ref: '#/components/x-bte-response-mapping/ncbigene-subj' bdsu-LOCATION_OF-vita: - supportBatch: True useTemplating: True @@ -111876,6 +122578,8 @@ components: semantic: SmallMolecule predicate: location_of source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' rcpt-PART_OF-fngs-rev: @@ -111898,6 +122602,8 @@ components: semantic: Protein predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' strd-COEXISTS_WITH-gngm-rev: @@ -111920,6 +122626,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' carb-PART_OF-bact-rev: @@ -111942,6 +122650,8 @@ components: semantic: SmallMolecule predicate: has_part source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' irda-COEXISTS_WITH-phsu: @@ -111964,6 +122674,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-COEXISTS_WITH-eico_umls: @@ -111986,6 +122698,8 @@ components: semantic: SmallMolecule predicate: coexists_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' eico-DISRUPTS-dsyn-rev: @@ -112008,6 +122722,8 @@ components: semantic: SmallMolecule predicate: disrupted_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' gngm_ncbigene-CONVERTS_TO-nusq_umls: @@ -112030,6 +122746,8 @@ components: semantic: NucleicAcidEntity predicate: derives_into source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' gngm_ncbigene-CONVERTS_TO-nusq_umls-rev: @@ -112052,6 +122770,8 @@ components: semantic: Gene predicate: derives_from source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/ncbigene-subj' imft-INTERACTS_WITH-cell: @@ -112074,6 +122794,8 @@ components: semantic: Cell predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' imft-INTERACTS_WITH-cell-rev: @@ -112096,6 +122818,8 @@ components: semantic: BiologicalEntity predicate: interacts_with source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' aapp-same_as-topp: @@ -112118,6 +122842,8 @@ components: semantic: Procedure predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-obj' aapp-same_as-topp-rev: @@ -112140,6 +122866,8 @@ components: semantic: Polypeptide predicate: close_match source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' elii-AFFECTS-fndg-rev: @@ -112162,5 +122890,7 @@ components: semantic: SmallMolecule predicate: affected_by source: "infores:semmeddb" + knowledge_level: not_provided + agent_type: text_mining_agent response_mapping: $ref: '#/components/x-bte-response-mapping/umls-subj' diff --git a/semmeddb/version_without_operations.yaml b/semmeddb/version_without_operations.yaml index 1f2d479a..1c017e37 100644 --- a/semmeddb/version_without_operations.yaml +++ b/semmeddb/version_without_operations.yaml @@ -19,7 +19,7 @@ info: component: KP team: - Service Provider - biolink-version: "3.5.3" + biolink-version: "4.1.6" servers: - description: Production server url: https://biothings.ncats.io/semmeddb diff --git a/suppkg/suppkg.yaml b/suppkg/suppkg.yaml index 7e4d3ed8..fbb25433 100644 --- a/suppkg/suppkg.yaml +++ b/suppkg/suppkg.yaml @@ -18,7 +18,7 @@ info: component: KP team: - Service Provider - biolink-version: "3.5.3" + biolink-version: "4.1.6" servers: - description: Encrypted Production server url: https://biothings.ncats.io/suppkg @@ -599,8 +599,9 @@ components: subject.semtypes:(aapp OR antb OR bacs OR dsp OR food OR inch OR orch OR phsu OR vita) AND (NOT subject.semtypes:(bact OR gngm OR plnt)) AND predicate:TREATS AND - object.semtypes:(acab OR anab OR cgab OR comd OR dsyn OR mobd OR neop) - predicate: treats + object.semtypes:(acab OR cgab OR comd OR dsyn OR mobd OR neop) + ## using these predicates because the relationship comes from text-mining + predicate: treats_or_applied_or_studied_to_treat source: "infores:suppkg" knowledge_level: not_provided agent_type: text_mining_agent @@ -629,8 +630,8 @@ components: subject.semtypes:(aapp OR antb OR bacs OR dsp OR food OR inch OR orch OR phsu OR vita) AND (NOT subject.semtypes:(bact OR gngm OR plnt)) AND predicate:TREATS AND - object.semtypes:(acab OR anab OR cgab OR comd OR dsyn OR mobd OR neop) - predicate: treated_by + object.semtypes:(acab OR cgab OR comd OR dsyn OR mobd OR neop) + predicate: subject_of_treatment_application_or_study_for_treatment_by source: "infores:suppkg" knowledge_level: not_provided agent_type: text_mining_agent diff --git a/ttd/smartapi.yaml b/ttd/smartapi.yaml index bfcbc589..1a6ddd0f 100644 --- a/ttd/smartapi.yaml +++ b/ttd/smartapi.yaml @@ -15,7 +15,7 @@ info: component: KP team: - Service Provider - biolink-version: "3.5.0" + biolink-version: "4.1.6" servers: - description: Encrypted Production server url: https://biothings.ncats.io/ttd @@ -296,12 +296,36 @@ paths: # - $ref: '#/components/x-bte-kgs-operations/chebi_treats_icd11-rev' - $ref: '#/components/x-bte-kgs-operations/pubchem_treats_mondo' - $ref: '#/components/x-bte-kgs-operations/pubchem_treats_mondo-rev' + - $ref: '#/components/x-bte-kgs-operations/pubchem_studiedToTreat_mondo' + - $ref: '#/components/x-bte-kgs-operations/pubchem_studiedToTreat_mondo-rev' + - $ref: '#/components/x-bte-kgs-operations/pubchem_preclinicalTreats_mondo' + - $ref: '#/components/x-bte-kgs-operations/pubchem_preclinicalTreats_mondo-rev' + - $ref: '#/components/x-bte-kgs-operations/pubchem_clinicalTrialTreats_mondo' + - $ref: '#/components/x-bte-kgs-operations/pubchem_clinicalTrialTreats_mondo-rev' - $ref: '#/components/x-bte-kgs-operations/pubchem_treats_icd11' - $ref: '#/components/x-bte-kgs-operations/pubchem_treats_icd11-rev' + - $ref: '#/components/x-bte-kgs-operations/pubchem_studiedToTreat_icd11' + - $ref: '#/components/x-bte-kgs-operations/pubchem_studiedToTreat_icd11-rev' + - $ref: '#/components/x-bte-kgs-operations/pubchem_preclinicalTreats_icd11' + - $ref: '#/components/x-bte-kgs-operations/pubchem_preclinicalTreats_icd11-rev' + - $ref: '#/components/x-bte-kgs-operations/pubchem_clinicalTrialTreats_icd11' + - $ref: '#/components/x-bte-kgs-operations/pubchem_clinicalTrialTreats_icd11-rev' - $ref: '#/components/x-bte-kgs-operations/ttd_drug_id_treats_mondo' - $ref: '#/components/x-bte-kgs-operations/ttd_drug_id_treats_mondo-rev' + - $ref: '#/components/x-bte-kgs-operations/ttd_drug_id_studiedToTreat_mondo' + - $ref: '#/components/x-bte-kgs-operations/ttd_drug_id_studiedToTreat_mondo-rev' + - $ref: '#/components/x-bte-kgs-operations/ttd_drug_id_preclinicalTreats_mondo' + - $ref: '#/components/x-bte-kgs-operations/ttd_drug_id_preclinicalTreats_mondo-rev' + - $ref: '#/components/x-bte-kgs-operations/ttd_drug_id_clinicalTrialTreats_mondo' + - $ref: '#/components/x-bte-kgs-operations/ttd_drug_id_clinicalTrialTreats_mondo-rev' - $ref: '#/components/x-bte-kgs-operations/ttd_drug_id_treats_icd11' - $ref: '#/components/x-bte-kgs-operations/ttd_drug_id_treats_icd11-rev' + - $ref: '#/components/x-bte-kgs-operations/ttd_drug_id_studiedToTreat_icd11' + - $ref: '#/components/x-bte-kgs-operations/ttd_drug_id_studiedToTreat_icd11-rev' + - $ref: '#/components/x-bte-kgs-operations/ttd_drug_id_preclinicalTreats_icd11' + - $ref: '#/components/x-bte-kgs-operations/ttd_drug_id_preclinicalTreats_icd11-rev' + - $ref: '#/components/x-bte-kgs-operations/ttd_drug_id_clinicalTrialTreats_icd11' + - $ref: '#/components/x-bte-kgs-operations/ttd_drug_id_clinicalTrialTreats_icd11-rev' - $ref: '#/components/x-bte-kgs-operations/uniprotkb_target_for_mondo' - $ref: '#/components/x-bte-kgs-operations/uniprotkb_target_for_mondo-rev' - $ref: '#/components/x-bte-kgs-operations/uniprotkb_target_for_icd11' @@ -595,14 +619,27 @@ components: ## - joinSafe is only needed if the delimiter isn't a comma ## - fields not included due to data-processing / biolink-modeling issues: ## - association.clinical_trial.status:has lots of possible values - ## 'investigative', 'patented', 'phase 2', 'approved', 'phase 1', 'terminated', 'phase 3', - ## 'discontinued in phase 2', 'phase 1/2', 'discontinued in phase 1', 'preclinical', 'discontinued in phase 3', - ## 'phase 2/3', 'clinical trial', 'withdrawn from market', 'phase 4', 'phase 3 trial', 'discontinued in phase1/2', - ## 'phase 2 trial', 'discontinued in preregistration', 'phase 2/3 trial', 'preregistration', 'phase 2a', - ## 'phase 1 trial', 'phase 0', 'registered', 'approved (orphan drug)', 'phase 1b', 'phase 2b', - ## 'discontinued in phase2/3', 'NDA filed', 'phase 1/2 trial', 'phase 1/2a', 'discontinued in phase 1 trial', - ## 'discontinued in phase 4', 'phase 1b/2a', 'application submitted', 'approval submitted', 'BLA submitted', - ## 'discontinued in phase 2a', 'discontinued in phase 2b' + ## - "treats/treated by" + ## - approved + ## - phase 4 + ## - approved (orphan drug) + ## - NDA filed + ## - currently mapping to "studied to treat/treated in studies by" + ## - investigative + ## - patented + ## - discontinued in preregistration + ## - preregistration + ## - withdrawn from market + ## - "in preclinical trials for/tested by preclinical trials of" + ## - preclinical + ## - everything else (31 terms): "in clinical trials for/tested by clinical trials of" + ## 'phase 2', 'phase 1', 'terminated', 'phase 3', 'discontinued in phase 2', + ## 'phase 1/2', 'discontinued in phase 1', 'discontinued in phase 3', 'phase 2/3', 'clinical trial', + ## 'phase 3 trial', 'discontinued in phase1/2', 'phase 2 trial', 'phase 2/3 trial', 'phase 2a', + ## 'phase 1 trial', 'phase 0', 'registered', 'phase 1b', 'phase 2b', + ## 'discontinued in phase2/3', 'phase 1/2 trial', 'phase 1/2a', 'discontinued in phase 1 trial', 'discontinued in phase 4', + ## 'phase 1b/2a', 'application submitted', 'approval submitted', 'BLA submitted', 'discontinued in phase 2a', + ## 'discontinued in phase 2b' ## - subject.bioclass. TODO: list the values (if too many, make a notes, need to make keys that are certain vocabularies) ## - subject.target_type. TODO: list the values (if too many, makes notes) # chebi_treats_mondo: @@ -631,7 +668,7 @@ components: # object.name, # subject.name # size: 1000 - # predicate: treats + # predicate: studied_to_treat # source: "infores:ttd" # knowledge_level: knowledge_assertion # agent_type: manual_agent @@ -662,7 +699,7 @@ components: # subject.name, # object.name # size: 1000 - # predicate: treated_by + # predicate: treated_in_studies_by # source: "infores:ttd" # knowledge_level: knowledge_assertion # agent_type: manual_agent @@ -698,7 +735,7 @@ components: # object.name, # subject.name # size: 1000 - # predicate: treats + # predicate: studied_to_treat # source: "infores:ttd" # knowledge_level: knowledge_assertion # agent_type: manual_agent @@ -731,7 +768,7 @@ components: # subject.name, # object.name # size: 1000 - # predicate: treated_by + # predicate: treated_in_studies_by # source: "infores:ttd" # knowledge_level: knowledge_assertion # agent_type: manual_agent @@ -741,8 +778,8 @@ components: # - qInput: "ICD11:CB03.4" ## Pulmonary fibrosis # oneOutput: "CHEBI:144367" ## 3PO pubchem_treats_mondo: - ## https://biothings.transltr.io/ttd/query?q=_exists_:subject.pubchem_compound%20AND%20_exists_:object.mondo%20AND%20association.predicate:%22biolink:treats%22 - ## 1604 records + ## https://biothings.ncats.io/ttd/query?q=_exists_:subject.pubchem_compound%20AND%20_exists_:object.mondo%20AND%20association.predicate:%22biolink:treats%22%20AND%20(association.clinical_trial.status:approved%20OR%20association.clinical_trial.status:%22phase%204%22%20OR%20association.clinical_trial.status:%22approved%20(orphan%20drug)%22%20OR%20association.clinical_trial.status:%22NDA%20filed%22) + ## 384 records - supportBatch: true useTemplating: true ## flag to say templating is being used below inputs: @@ -763,7 +800,10 @@ components: object.name, subject.name size: 1000 - filter: _exists_:subject.pubchem_compound AND _exists_:object.mondo AND association.predicate:"biolink:treats" + filter: >- + _exists_:subject.pubchem_compound AND _exists_:object.mondo AND association.predicate:"biolink:treats" AND + (association.clinical_trial.status:approved OR association.clinical_trial.status:"phase 4" OR + association.clinical_trial.status:"approved (orphan drug)" OR association.clinical_trial.status:"NDA filed") predicate: treats source: "infores:ttd" knowledge_level: knowledge_assertion @@ -771,9 +811,657 @@ components: response_mapping: "$ref": "#/components/x-bte-response-mapping/mondo-object" testExamples: - - qInput: "PUBCHEM.COMPOUND:118063735" ## LMB763 (Nidufexor) - oneOutput: "MONDO:0004790" ## fatty liver disease - pubchem_treats_mondo-rev: + - qInput: "PUBCHEM.COMPOUND:126565" ## Lestaurtinib + oneOutput: "MONDO:0004643" ## Acute myeloid leukaemia / myeloid leukemia + pubchem_treats_mondo-rev: + - supportBatch: true + useTemplating: true + inputs: + - id: MONDO + semantic: Disease + requestBody: ## no prefix + body: + q: "{{ queryInputs | rmPrefix() }}" + scopes: object.mondo + outputs: + - id: "PUBCHEM.COMPOUND" + semantic: SmallMolecule + parameters: + fields: >- + subject.pubchem_compound, + subject.name, + object.name + size: 1000 + filter: >- + _exists_:subject.pubchem_compound AND _exists_:object.mondo AND association.predicate:"biolink:treats" AND + (association.clinical_trial.status:approved OR association.clinical_trial.status:"phase 4" OR + association.clinical_trial.status:"approved (orphan drug)" OR association.clinical_trial.status:"NDA filed") + predicate: treated_by + source: "infores:ttd" + knowledge_level: knowledge_assertion + agent_type: manual_agent + response_mapping: + "$ref": "#/components/x-bte-response-mapping/pubchem-subject" + testExamples: + - qInput: "MONDO:0005083" ## Psoriasis vulgaris / psoriasis + oneOutput: "PUBCHEM.COMPOUND:9832804" ## LEO 80185 / Enstilar + pubchem_studiedToTreat_mondo: + ## https://biothings.ncats.io/ttd/query?q=_exists_:subject.pubchem_compound%20AND%20_exists_:object.mondo%20AND%20association.predicate:%22biolink:treats%22%20AND%20(association.clinical_trial.status:investigative%20OR%20association.clinical_trial.status:patented%20OR%20association.clinical_trial.status:%22discontinued%20in%20preregistration%22%20OR%20association.clinical_trial.status:preregistration%20OR%20association.clinical_trial.status:%22withdrawn%20from%20market%22) + ## 155 records + - supportBatch: true + useTemplating: true ## flag to say templating is being used below + inputs: + - id: "PUBCHEM.COMPOUND" + semantic: SmallMolecule + requestBody: ## no prefix + body: + q: "{{ queryInputs | rmPrefix() }}" + scopes: subject.pubchem_compound + outputs: + - id: MONDO + semantic: Disease + parameters: + ## not including these fields due to data-processing / biolink-modeling issues + ## - association.clinical_trial.status + fields: >- + object.mondo, + object.name, + subject.name + size: 1000 + filter: >- + _exists_:subject.pubchem_compound AND _exists_:object.mondo AND association.predicate:"biolink:treats" AND + (association.clinical_trial.status:investigative OR association.clinical_trial.status:patented OR + association.clinical_trial.status:"discontinued in preregistration" OR association.clinical_trial.status:preregistration OR + association.clinical_trial.status:"withdrawn from market") + predicate: studied_to_treat + source: "infores:ttd" + knowledge_level: knowledge_assertion + agent_type: manual_agent + response_mapping: + "$ref": "#/components/x-bte-response-mapping/mondo-object" + testExamples: + - qInput: "PUBCHEM.COMPOUND:33625" ## INDORAMIN + oneOutput: "MONDO:0001134" ## Hypertension / essential hypertension + pubchem_studiedToTreat_mondo-rev: + - supportBatch: true + useTemplating: true + inputs: + - id: MONDO + semantic: Disease + requestBody: ## no prefix + body: + q: "{{ queryInputs | rmPrefix() }}" + scopes: object.mondo + outputs: + - id: "PUBCHEM.COMPOUND" + semantic: SmallMolecule + parameters: + fields: >- + subject.pubchem_compound, + subject.name, + object.name + size: 1000 + filter: >- + _exists_:subject.pubchem_compound AND _exists_:object.mondo AND association.predicate:"biolink:treats" AND + (association.clinical_trial.status:investigative OR association.clinical_trial.status:patented OR + association.clinical_trial.status:"discontinued in preregistration" OR association.clinical_trial.status:preregistration OR + association.clinical_trial.status:"withdrawn from market") + predicate: treated_in_studies_by + source: "infores:ttd" + knowledge_level: knowledge_assertion + agent_type: manual_agent + response_mapping: + "$ref": "#/components/x-bte-response-mapping/pubchem-subject" + testExamples: + - qInput: "MONDO:0008315" ## Prostate cancer + oneOutput: "PUBCHEM.COMPOUND:159594" ## Atrasentan + pubchem_preclinicalTreats_mondo: + ## https://biothings.ncats.io/ttd/query?q=_exists_:subject.pubchem_compound%20AND%20_exists_:object.mondo%20AND%20association.predicate:%22biolink:treats%22%20AND%20association.clinical_trial.status:preclinical + ## 14 records + - supportBatch: true + useTemplating: true ## flag to say templating is being used below + inputs: + - id: "PUBCHEM.COMPOUND" + semantic: SmallMolecule + requestBody: ## no prefix + body: + q: "{{ queryInputs | rmPrefix() }}" + scopes: subject.pubchem_compound + outputs: + - id: MONDO + semantic: Disease + parameters: + ## not including these fields due to data-processing / biolink-modeling issues + ## - association.clinical_trial.status + fields: >- + object.mondo, + object.name, + subject.name + size: 1000 + filter: >- + _exists_:subject.pubchem_compound AND _exists_:object.mondo AND association.predicate:"biolink:treats" AND + association.clinical_trial.status:preclinical + predicate: in_preclinical_trials_for + source: "infores:ttd" + knowledge_level: knowledge_assertion + agent_type: manual_agent + response_mapping: + "$ref": "#/components/x-bte-response-mapping/mondo-object" + testExamples: + - qInput: "PUBCHEM.COMPOUND:15389743" ## S32504 / (+/-)-trans-3,4,4a,5,6,10b-Hexahydro-9-carbamoyl-4-propyl-2h-naphth[1,2-b]-1,4-oxazine + oneOutput: "MONDO:0005180" ## Parkinson disease + pubchem_preclinicalTreats_mondo-rev: + - supportBatch: true + useTemplating: true + inputs: + - id: MONDO + semantic: Disease + requestBody: ## no prefix + body: + q: "{{ queryInputs | rmPrefix() }}" + scopes: object.mondo + outputs: + - id: "PUBCHEM.COMPOUND" + semantic: SmallMolecule + parameters: + fields: >- + subject.pubchem_compound, + subject.name, + object.name + size: 1000 + filter: >- + _exists_:subject.pubchem_compound AND _exists_:object.mondo AND association.predicate:"biolink:treats" AND + association.clinical_trial.status:preclinical + predicate: tested_by_preclinical_trials_of + source: "infores:ttd" + knowledge_level: knowledge_assertion + agent_type: manual_agent + response_mapping: + "$ref": "#/components/x-bte-response-mapping/pubchem-subject" + testExamples: + - qInput: "MONDO:0021094" ## Human immunodeficiency virus infection / immunodeficiency disease? + oneOutput: "PUBCHEM.COMPOUND:463893" ## PD-176931 + pubchem_clinicalTrialTreats_mondo: + ## https://biothings.ncats.io/ttd/query?q=_exists_:subject.pubchem_compound%20AND%20_exists_:object.mondo%20AND%20association.predicate:%22biolink:treats%22%20AND%20NOT%20(association.clinical_trial.status:approved%20OR%20association.clinical_trial.status:%22phase%204%22%20OR%20association.clinical_trial.status:%22approved%20(orphan%20drug)%22%20OR%20association.clinical_trial.status:%22NDA%20filed%22%20OR%20association.clinical_trial.status:investigative%20OR%20association.clinical_trial.status:patented%20OR%20association.clinical_trial.status:%22discontinued%20in%20preregistration%22%20OR%20association.clinical_trial.status:preregistration%20OR%20association.clinical_trial.status:%22withdrawn%20from%20market%22%20OR%20association.clinical_trial.status:preclinical) + ## 1051 records + - supportBatch: true + useTemplating: true ## flag to say templating is being used below + inputs: + - id: "PUBCHEM.COMPOUND" + semantic: SmallMolecule + requestBody: ## no prefix + body: + q: "{{ queryInputs | rmPrefix() }}" + scopes: subject.pubchem_compound + outputs: + - id: MONDO + semantic: Disease + parameters: + ## not including these fields due to data-processing / biolink-modeling issues + ## - association.clinical_trial.status + fields: >- + object.mondo, + object.name, + subject.name + size: 1000 + filter: >- + _exists_:subject.pubchem_compound AND _exists_:object.mondo AND association.predicate:"biolink:treats" AND NOT + (association.clinical_trial.status:approved OR association.clinical_trial.status:"phase 4" OR + association.clinical_trial.status:"approved (orphan drug)" OR association.clinical_trial.status:"NDA filed" OR + association.clinical_trial.status:investigative OR association.clinical_trial.status:patented OR + association.clinical_trial.status:"discontinued in preregistration" OR association.clinical_trial.status:preregistration OR + association.clinical_trial.status:"withdrawn from market" OR association.clinical_trial.status:preclinical) + predicate: in_clinical_trials_for + source: "infores:ttd" + knowledge_level: knowledge_assertion + agent_type: manual_agent + response_mapping: + "$ref": "#/components/x-bte-response-mapping/mondo-object" + testExamples: + - qInput: "PUBCHEM.COMPOUND:133046" ## PROXODOLOL + oneOutput: "MONDO:0005041" ## Glaucoma/ocular hypertension + pubchem_clinicalTrialTreats_mondo-rev: + - supportBatch: true + useTemplating: true + inputs: + - id: MONDO + semantic: Disease + requestBody: ## no prefix + body: + q: "{{ queryInputs | rmPrefix() }}" + scopes: object.mondo + outputs: + - id: "PUBCHEM.COMPOUND" + semantic: SmallMolecule + parameters: + fields: >- + subject.pubchem_compound, + subject.name, + object.name + size: 1000 + filter: >- + _exists_:subject.pubchem_compound AND _exists_:object.mondo AND association.predicate:"biolink:treats" AND NOT + (association.clinical_trial.status:approved OR association.clinical_trial.status:"phase 4" OR + association.clinical_trial.status:"approved (orphan drug)" OR association.clinical_trial.status:"NDA filed" OR + association.clinical_trial.status:investigative OR association.clinical_trial.status:patented OR + association.clinical_trial.status:"discontinued in preregistration" OR association.clinical_trial.status:preregistration OR + association.clinical_trial.status:"withdrawn from market" OR association.clinical_trial.status:preclinical) + predicate: tested_by_clinical_trials_of + source: "infores:ttd" + knowledge_level: knowledge_assertion + agent_type: manual_agent + response_mapping: + "$ref": "#/components/x-bte-response-mapping/pubchem-subject" + testExamples: + - qInput: "MONDO:0019056" ## Myasthenia gravis / neuromuscular disease + oneOutput: "PUBCHEM.COMPOUND:133083018" ## RA101495 / Zilucoplan + pubchem_treats_icd11: + ## url: https://biothings.transltr.io/ttd/query?q=_exists_:subject.pubchem_compound%20AND%20_exists_:object.icd11%20AND%20(NOT%20_exists_:object.mondo)%20AND%20association.predicate:%22biolink:treats%22%20AND%20(association.clinical_trial.status:approved%20OR%20association.clinical_trial.status:%22phase%204%22%20OR%20association.clinical_trial.status:%22approved%20(orphan%20drug)%22%20OR%20association.clinical_trial.status:%22NDA%20filed%22) + ## 2328 records + ## exists: subject.pubchem_compound, association.predicate.biolink:treats, object.icd11 + ## not exists: object.mondo + - supportBatch: true + useTemplating: true ## flag to say templating is being used below + inputs: + - id: "PUBCHEM.COMPOUND" + semantic: SmallMolecule + requestBody: ## no prefix + body: + q: "{{ queryInputs | rmPrefix() }}" + scopes: subject.pubchem_compound + outputs: + - id: ICD11 + semantic: Disease + parameters: + ## not including these fields due to data-processing / biolink-modeling issues + ## - association.clinical_trial.status + fields: >- + object.icd11, + object.name, + subject.name + size: 1000 + filter: >- + _exists_:subject.pubchem_compound AND _exists_:object.icd11 AND + (NOT _exists_:object.mondo) AND association.predicate:"biolink:treats" AND + (association.clinical_trial.status:approved OR association.clinical_trial.status:"phase 4" OR + association.clinical_trial.status:"approved (orphan drug)" OR association.clinical_trial.status:"NDA filed") + predicate: treats + source: "infores:ttd" + knowledge_level: knowledge_assertion + agent_type: manual_agent + response_mapping: + "$ref": "#/components/x-bte-response-mapping/icd11-object" + testExamples: + - qInput: "PUBCHEM.COMPOUND:11988953" ## TS-071 / Luseogliflozin + oneOutput: "ICD11:5A11" ## Type-2 diabetes + pubchem_treats_icd11-rev: + - supportBatch: true + useTemplating: true + inputs: + - id: ICD11 + semantic: Disease + requestBody: ## no prefix + body: + q: "{{ queryInputs | rmPrefix() }}" + scopes: object.icd11 + outputs: + - id: "PUBCHEM.COMPOUND" + semantic: SmallMolecule + parameters: + fields: >- + subject.pubchem_compound, + subject.name, + object.name + size: 1000 + filter: >- + _exists_:subject.pubchem_compound AND _exists_:object.icd11 AND + (NOT _exists_:object.mondo) AND association.predicate:"biolink:treats" AND + (association.clinical_trial.status:approved OR association.clinical_trial.status:"phase 4" OR + association.clinical_trial.status:"approved (orphan drug)" OR association.clinical_trial.status:"NDA filed") + predicate: treated_by + source: "infores:ttd" + knowledge_level: knowledge_assertion + agent_type: manual_agent + response_mapping: + "$ref": "#/components/x-bte-response-mapping/pubchem-subject" + testExamples: + - qInput: "ICD11:FB83.0" ## Osteoporosis + oneOutput: "PUBCHEM.COMPOUND:23663991" ## CT-064 / Ibandronate sodium + pubchem_studiedToTreat_icd11: + ## url: https://biothings.transltr.io/ttd/query?q=_exists_:subject.pubchem_compound%20AND%20_exists_:object.icd11%20AND%20(NOT%20_exists_:object.mondo)%20AND%20association.predicate:%22biolink:treats%22%20AND%20(association.clinical_trial.status:investigative%20OR%20association.clinical_trial.status:patented%20OR%20association.clinical_trial.status:%22discontinued%20in%20preregistration%22%20OR%20association.clinical_trial.status:preregistration%20OR%20association.clinical_trial.status:%22withdrawn%20from%20market%22) + ## 2005 records + ## exists: subject.pubchem_compound, association.predicate.biolink:treats, object.icd11 + ## not exists: object.mondo + - supportBatch: true + useTemplating: true ## flag to say templating is being used below + inputs: + - id: "PUBCHEM.COMPOUND" + semantic: SmallMolecule + requestBody: ## no prefix + body: + q: "{{ queryInputs | rmPrefix() }}" + scopes: subject.pubchem_compound + outputs: + - id: ICD11 + semantic: Disease + parameters: + ## not including these fields due to data-processing / biolink-modeling issues + ## - association.clinical_trial.status + fields: >- + object.icd11, + object.name, + subject.name + size: 1000 + filter: >- + _exists_:subject.pubchem_compound AND _exists_:object.icd11 AND + (NOT _exists_:object.mondo) AND association.predicate:"biolink:treats" AND + (association.clinical_trial.status:investigative OR association.clinical_trial.status:patented OR + association.clinical_trial.status:"discontinued in preregistration" OR association.clinical_trial.status:preregistration OR + association.clinical_trial.status:"withdrawn from market") + predicate: studied_to_treat + source: "infores:ttd" + knowledge_level: knowledge_assertion + agent_type: manual_agent + response_mapping: + "$ref": "#/components/x-bte-response-mapping/icd11-object" + testExamples: + - qInput: "PUBCHEM.COMPOUND:65869" ## Ebrotidine + oneOutput: "ICD11:DA63" ## Duodenal ulcer + pubchem_studiedToTreat_icd11-rev: + - supportBatch: true + useTemplating: true + inputs: + - id: ICD11 + semantic: Disease + requestBody: ## no prefix + body: + q: "{{ queryInputs | rmPrefix() }}" + scopes: object.icd11 + outputs: + - id: "PUBCHEM.COMPOUND" + semantic: SmallMolecule + parameters: + fields: >- + subject.pubchem_compound, + subject.name, + object.name + size: 1000 + filter: >- + _exists_:subject.pubchem_compound AND _exists_:object.icd11 AND + (NOT _exists_:object.mondo) AND association.predicate:"biolink:treats" AND + (association.clinical_trial.status:investigative OR association.clinical_trial.status:patented OR + association.clinical_trial.status:"discontinued in preregistration" OR association.clinical_trial.status:preregistration OR + association.clinical_trial.status:"withdrawn from market") + predicate: treated_in_studies_by + source: "infores:ttd" + knowledge_level: knowledge_assertion + agent_type: manual_agent + response_mapping: + "$ref": "#/components/x-bte-response-mapping/pubchem-subject" + testExamples: + - qInput: "ICD11:MD90" ## Chemotherapy-induced nausea + oneOutput: "PUBCHEM.COMPOUND:9917021" ## Casopitant + pubchem_preclinicalTreats_icd11: + ## url: https://biothings.transltr.io/ttd/query?q=_exists_:subject.pubchem_compound%20AND%20_exists_:object.icd11%20AND%20(NOT%20_exists_:object.mondo)%20AND%20association.predicate:%22biolink:treats%22%20AND%20association.clinical_trial.status:preclinical + ## 236 records + ## exists: subject.pubchem_compound, association.predicate.biolink:treats, object.icd11 + ## not exists: object.mondo + - supportBatch: true + useTemplating: true ## flag to say templating is being used below + inputs: + - id: "PUBCHEM.COMPOUND" + semantic: SmallMolecule + requestBody: ## no prefix + body: + q: "{{ queryInputs | rmPrefix() }}" + scopes: subject.pubchem_compound + outputs: + - id: ICD11 + semantic: Disease + parameters: + ## not including these fields due to data-processing / biolink-modeling issues + ## - association.clinical_trial.status + fields: >- + object.icd11, + object.name, + subject.name + size: 1000 + filter: >- + _exists_:subject.pubchem_compound AND _exists_:object.icd11 AND + (NOT _exists_:object.mondo) AND association.predicate:"biolink:treats" AND + association.clinical_trial.status:preclinical + predicate: in_preclinical_trials_for + source: "infores:ttd" + knowledge_level: knowledge_assertion + agent_type: manual_agent + response_mapping: + "$ref": "#/components/x-bte-response-mapping/icd11-object" + testExamples: + - qInput: "PUBCHEM.COMPOUND:133107" ## U-99363E / 3-Ethoxy-N-methyl-N-(1-(phenylmethyl)-4-piperidinyl)-2-pyridinylamine + oneOutput: "ICD11:6A20" ## Schizophrenia + pubchem_preclinicalTreats_icd11-rev: + - supportBatch: true + useTemplating: true + inputs: + - id: ICD11 + semantic: Disease + requestBody: ## no prefix + body: + q: "{{ queryInputs | rmPrefix() }}" + scopes: object.icd11 + outputs: + - id: "PUBCHEM.COMPOUND" + semantic: SmallMolecule + parameters: + fields: >- + subject.pubchem_compound, + subject.name, + object.name + size: 1000 + filter: >- + _exists_:subject.pubchem_compound AND _exists_:object.icd11 AND + (NOT _exists_:object.mondo) AND association.predicate:"biolink:treats" AND + association.clinical_trial.status:preclinical + predicate: tested_by_preclinical_trials_of + source: "infores:ttd" + knowledge_level: knowledge_assertion + agent_type: manual_agent + response_mapping: + "$ref": "#/components/x-bte-response-mapping/pubchem-subject" + testExamples: + - qInput: "ICD11:FA20" ## Rheumatoid arthritis + oneOutput: "PUBCHEM.COMPOUND:132504749" ## CLIK-181 / (2R,3S)-3-N-[2-(4-acetamidophenyl)ethyl]-2-N-[(2S)-1-(dimethylamino)-1-oxo-3-phenylpropan-2-yl]oxirane-2,3-dicarboxamide + pubchem_clinicalTrialTreats_icd11: + ## url: https://biothings.transltr.io/ttd/query?q=_exists_:subject.pubchem_compound%20AND%20_exists_:object.icd11%20AND%20(NOT%20_exists_:object.mondo)%20AND%20association.predicate:%22biolink:treats%22%20AND%20NOT%20(association.clinical_trial.status:approved%20OR%20association.clinical_trial.status:%22phase%204%22%20OR%20association.clinical_trial.status:%22approved%20(orphan%20drug)%22%20OR%20association.clinical_trial.status:%22NDA%20filed%22%20OR%20association.clinical_trial.status:investigative%20OR%20association.clinical_trial.status:patented%20OR%20association.clinical_trial.status:%22discontinued%20in%20preregistration%22%20OR%20association.clinical_trial.status:preregistration%20OR%20association.clinical_trial.status:%22withdrawn%20from%20market%22%20OR%20association.clinical_trial.status:preclinical) + ## 5419 records + ## exists: subject.pubchem_compound, association.predicate.biolink:treats, object.icd11 + ## not exists: object.mondo + - supportBatch: true + useTemplating: true ## flag to say templating is being used below + inputs: + - id: "PUBCHEM.COMPOUND" + semantic: SmallMolecule + requestBody: ## no prefix + body: + q: "{{ queryInputs | rmPrefix() }}" + scopes: subject.pubchem_compound + outputs: + - id: ICD11 + semantic: Disease + parameters: + ## not including these fields due to data-processing / biolink-modeling issues + ## - association.clinical_trial.status + fields: >- + object.icd11, + object.name, + subject.name + size: 1000 + filter: >- + _exists_:subject.pubchem_compound AND _exists_:object.icd11 + AND (NOT _exists_:object.mondo) AND association.predicate:"biolink:treats" AND NOT + (association.clinical_trial.status:approved OR association.clinical_trial.status:"phase 4" OR + association.clinical_trial.status:"approved (orphan drug)" OR association.clinical_trial.status:"NDA filed" OR + association.clinical_trial.status:investigative OR association.clinical_trial.status:patented OR + association.clinical_trial.status:"discontinued in preregistration" OR association.clinical_trial.status:preregistration OR + association.clinical_trial.status:"withdrawn from market" OR association.clinical_trial.status:preclinical) + predicate: in_clinical_trials_for + source: "infores:ttd" + knowledge_level: knowledge_assertion + agent_type: manual_agent + response_mapping: + "$ref": "#/components/x-bte-response-mapping/icd11-object" + testExamples: + - qInput: "PUBCHEM.COMPOUND:127912" ## 1192U90 / 2-Amino-N-(4-(4-(1,2-benzisothiazol-3-yl)-1-piperazinyl)butyl)benzamide + oneOutput: "ICD11:6A20" ## Schizophrenia + pubchem_clinicalTrialTreats_icd11-rev: + - supportBatch: true + useTemplating: true + inputs: + - id: ICD11 + semantic: Disease + requestBody: ## no prefix + body: + q: "{{ queryInputs | rmPrefix() }}" + scopes: object.icd11 + outputs: + - id: "PUBCHEM.COMPOUND" + semantic: SmallMolecule + parameters: + fields: >- + subject.pubchem_compound, + subject.name, + object.name + size: 1000 + filter: >- + _exists_:subject.pubchem_compound AND _exists_:object.icd11 + AND (NOT _exists_:object.mondo) AND association.predicate:"biolink:treats" AND NOT + (association.clinical_trial.status:approved OR association.clinical_trial.status:"phase 4" OR + association.clinical_trial.status:"approved (orphan drug)" OR association.clinical_trial.status:"NDA filed" OR + association.clinical_trial.status:investigative OR association.clinical_trial.status:patented OR + association.clinical_trial.status:"discontinued in preregistration" OR association.clinical_trial.status:preregistration OR + association.clinical_trial.status:"withdrawn from market" OR association.clinical_trial.status:preclinical) + predicate: tested_by_clinical_trials_of + source: "infores:ttd" + knowledge_level: knowledge_assertion + agent_type: manual_agent + response_mapping: + "$ref": "#/components/x-bte-response-mapping/pubchem-subject" + testExamples: + - qInput: "ICD11:2A37" ## Myelodysplastic syndrome + oneOutput: "PUBCHEM.COMPOUND:126637809" ## JNJ-64619178 / Onametostat + ttd_drug_id_treats_mondo: + ## url: https://biothings.transltr.io/ttd/query?q=_exists_:subject.ttd_drug_id%20AND%20(NOT%20_exists_:subject.pubchem_compound)%20AND%20_exists_:object.mondo%20AND%20association.predicate:%22biolink:treats%22%20AND%20(association.clinical_trial.status:approved%20OR%20association.clinical_trial.status:%22phase%204%22%20OR%20association.clinical_trial.status:%22approved%20(orphan%20drug)%22%20OR%20association.clinical_trial.status:%22NDA%20filed%22) + ## 100 records + ## exists: subject.ttd_drug_id, association.predicate.biolink:treats, object.mondo + ## not exists: subject.pubchem_compound + - supportBatch: true + useTemplating: true ## flag to say templating is being used below + inputs: + - id: "TTD.DRUG" + semantic: SmallMolecule + requestBody: ## no prefix + body: + q: "{{ queryInputs | rmPrefix() }}" + scopes: subject.ttd_drug_id + outputs: + - id: MONDO + semantic: Disease + parameters: + ## not including these fields due to data-processing / biolink-modeling issues + ## - association.clinical_trial.status + fields: >- + object.mondo, + object.name, + subject.name + size: 1000 + filter: >- + _exists_:subject.ttd_drug_id AND (NOT _exists_:subject.pubchem_compound) AND + _exists_:object.mondo AND association.predicate:"biolink:treats" AND + (association.clinical_trial.status:approved OR association.clinical_trial.status:"phase 4" OR + association.clinical_trial.status:"approved (orphan drug)" OR association.clinical_trial.status:"NDA filed") + predicate: treats + source: "infores:ttd" + knowledge_level: knowledge_assertion + agent_type: manual_agent + response_mapping: + "$ref": "#/components/x-bte-response-mapping/mondo-object" + testExamples: + - qInput: "TTD.DRUG:D09RJA" ## RELVARTM or BREOTM ELLIPTATM + oneOutput: "MONDO:0004979" ## Asthma + ttd_drug_id_treats_mondo-rev: + - supportBatch: true + useTemplating: true + inputs: + - id: MONDO + semantic: Disease + requestBody: ## no prefix + body: + q: "{{ queryInputs | rmPrefix() }}" + scopes: object.mondo + outputs: + - id: "TTD.DRUG" + semantic: SmallMolecule + parameters: + fields: >- + subject.ttd_drug_id, + subject.name, + object.name + size: 1000 + filter: >- + _exists_:subject.ttd_drug_id AND (NOT _exists_:subject.pubchem_compound) AND + _exists_:object.mondo AND association.predicate:"biolink:treats" AND + (association.clinical_trial.status:approved OR association.clinical_trial.status:"phase 4" OR + association.clinical_trial.status:"approved (orphan drug)" OR association.clinical_trial.status:"NDA filed") + predicate: treated_by + source: "infores:ttd" + knowledge_level: knowledge_assertion + agent_type: manual_agent + response_mapping: + "$ref": "#/components/x-bte-response-mapping/ttd_drug_id-subject" + testExamples: + - qInput: "MONDO:0005180" ## Parkinson disease + oneOutput: "TTD.DRUG:D06GYJ" ## PD-01 + ttd_drug_id_studiedToTreat_mondo: + ## url: https://biothings.transltr.io/ttd/query?q=_exists_:subject.ttd_drug_id%20AND%20(NOT%20_exists_:subject.pubchem_compound)%20AND%20_exists_:object.mondo%20AND%20association.predicate:%22biolink:treats%22%20AND%20(association.clinical_trial.status:investigative%20OR%20association.clinical_trial.status:patented%20OR%20association.clinical_trial.status:%22discontinued%20in%20preregistration%22%20OR%20association.clinical_trial.status:preregistration%20OR%20association.clinical_trial.status:%22withdrawn%20from%20market%22) + ## 601 records + ## exists: subject.ttd_drug_id, association.predicate.biolink:treats, object.mondo + ## not exists: subject.pubchem_compound + - supportBatch: true + useTemplating: true ## flag to say templating is being used below + inputs: + - id: "TTD.DRUG" + semantic: SmallMolecule + requestBody: ## no prefix + body: + q: "{{ queryInputs | rmPrefix() }}" + scopes: subject.ttd_drug_id + outputs: + - id: MONDO + semantic: Disease + parameters: + ## not including these fields due to data-processing / biolink-modeling issues + ## - association.clinical_trial.status + fields: >- + object.mondo, + object.name, + subject.name + size: 1000 + filter: >- + _exists_:subject.ttd_drug_id AND (NOT _exists_:subject.pubchem_compound) AND + _exists_:object.mondo AND association.predicate:"biolink:treats" AND + (association.clinical_trial.status:investigative OR association.clinical_trial.status:patented OR + association.clinical_trial.status:"discontinued in preregistration" OR association.clinical_trial.status:preregistration OR + association.clinical_trial.status:"withdrawn from market") + predicate: studied_to_treat + source: "infores:ttd" + knowledge_level: knowledge_assertion + agent_type: manual_agent + response_mapping: + "$ref": "#/components/x-bte-response-mapping/mondo-object" + testExamples: + - qInput: "TTD.DRUG:D03UFM" ## BMS-200980 + oneOutput: "MONDO:0004781" ## Myocardial infarction / acute myocardial infarction + ttd_drug_id_studiedToTreat_mondo-rev: - supportBatch: true useTemplating: true inputs: @@ -784,91 +1472,102 @@ components: q: "{{ queryInputs | rmPrefix() }}" scopes: object.mondo outputs: - - id: "PUBCHEM.COMPOUND" + - id: "TTD.DRUG" semantic: SmallMolecule parameters: fields: >- - subject.pubchem_compound, + subject.ttd_drug_id, subject.name, object.name size: 1000 - filter: _exists_:subject.pubchem_compound AND _exists_:object.mondo AND association.predicate:"biolink:treats" - predicate: treated_by + filter: >- + _exists_:subject.ttd_drug_id AND (NOT _exists_:subject.pubchem_compound) AND + _exists_:object.mondo AND association.predicate:"biolink:treats" AND + (association.clinical_trial.status:investigative OR association.clinical_trial.status:patented OR + association.clinical_trial.status:"discontinued in preregistration" OR association.clinical_trial.status:preregistration OR + association.clinical_trial.status:"withdrawn from market") + predicate: treated_in_studies_by source: "infores:ttd" knowledge_level: knowledge_assertion agent_type: manual_agent response_mapping: - "$ref": "#/components/x-bte-response-mapping/pubchem-subject" + "$ref": "#/components/x-bte-response-mapping/ttd_drug_id-subject" testExamples: - - qInput: "MONDO:0021094" ## Human immunodeficiency virus infection / immunodeficiency disease?? - oneOutput: "PUBCHEM.COMPOUND:103596027" ## GS-1156 (8-(3-Chloro-5-(trifluoromethyl)pyridin-2-yl)-8-azabicyclo[3.2.1]octan-3-one) - pubchem_treats_icd11: - ## url: https://biothings.transltr.io/ttd/query?q=_exists_:subject.pubchem_compound%20AND%20_exists_:object.icd11%20AND%20(NOT%20_exists_:object.mondo)%20AND%20association.predicate:%22biolink:treats%22 - ## 9985 records - ## exists: subject.pubchem_compound, association.predicate.biolink:treats, object.icd11 - ## not exists: object.mondo + - qInput: "MONDO:0005012" ## Melanoma / cutaneous melanoma + oneOutput: "TTD.DRUG:D01FWR" ## MPL-containing Pollinex allergy desensitization vaccine + ttd_drug_id_preclinicalTreats_mondo: + ## url: https://biothings.transltr.io/ttd/query?q=_exists_:subject.ttd_drug_id%20AND%20(NOT%20_exists_:subject.pubchem_compound)%20AND%20_exists_:object.mondo%20AND%20association.predicate:%22biolink:treats%22%20AND%20association.clinical_trial.status:preclinical + ## 37 records + ## exists: subject.ttd_drug_id, association.predicate.biolink:treats, object.mondo + ## not exists: subject.pubchem_compound - supportBatch: true useTemplating: true ## flag to say templating is being used below inputs: - - id: "PUBCHEM.COMPOUND" + - id: "TTD.DRUG" semantic: SmallMolecule requestBody: ## no prefix body: q: "{{ queryInputs | rmPrefix() }}" - scopes: subject.pubchem_compound + scopes: subject.ttd_drug_id outputs: - - id: ICD11 + - id: MONDO semantic: Disease parameters: - ## not including these fields due to data-processing / biolink-modeling issues - ## - association.clinical_trial.status + ## not including these fields due to data-processing / biolink-modeling issues + ## - association.clinical_trial.status fields: >- - object.icd11, + object.mondo, object.name, subject.name size: 1000 - filter: _exists_:subject.pubchem_compound AND _exists_:object.icd11 AND (NOT _exists_:object.mondo) AND association.predicate:"biolink:treats" - predicate: treats + filter: >- + _exists_:subject.ttd_drug_id AND (NOT _exists_:subject.pubchem_compound) AND + _exists_:object.mondo AND association.predicate:"biolink:treats" AND + association.clinical_trial.status:preclinical + predicate: in_preclinical_trials_for source: "infores:ttd" knowledge_level: knowledge_assertion agent_type: manual_agent response_mapping: - "$ref": "#/components/x-bte-response-mapping/icd11-object" + "$ref": "#/components/x-bte-response-mapping/mondo-object" testExamples: - - qInput: "PUBCHEM.COMPOUND:126843189" ## AVN-101 (AVN-101 HCl) - oneOutput: "ICD11:6D71" ## Cognitive impairment - pubchem_treats_icd11-rev: + - qInput: "TTD.DRUG:D03JZD" ## Neurosolve + oneOutput: "MONDO:0005041" ## Glaucoma/ocular hypertension + ttd_drug_id_preclinicalTreats_mondo-rev: - supportBatch: true useTemplating: true inputs: - - id: ICD11 + - id: MONDO semantic: Disease requestBody: ## no prefix body: q: "{{ queryInputs | rmPrefix() }}" - scopes: object.icd11 + scopes: object.mondo outputs: - - id: "PUBCHEM.COMPOUND" + - id: "TTD.DRUG" semantic: SmallMolecule parameters: fields: >- - subject.pubchem_compound, + subject.ttd_drug_id, subject.name, object.name size: 1000 - filter: _exists_:subject.pubchem_compound AND _exists_:object.icd11 AND (NOT _exists_:object.mondo) AND association.predicate:"biolink:treats" - predicate: treated_by + filter: >- + _exists_:subject.ttd_drug_id AND (NOT _exists_:subject.pubchem_compound) AND + _exists_:object.mondo AND association.predicate:"biolink:treats" AND + association.clinical_trial.status:preclinical + predicate: tested_by_preclinical_trials_of source: "infores:ttd" knowledge_level: knowledge_assertion agent_type: manual_agent response_mapping: - "$ref": "#/components/x-bte-response-mapping/pubchem-subject" + "$ref": "#/components/x-bte-response-mapping/ttd_drug_id-subject" testExamples: - - qInput: "ICD11:MG51" ## Multidrug resistant infection - oneOutput: "PUBCHEM.COMPOUND:139600308" ## SPR206 - ttd_drug_id_treats_mondo: - ## url: https://biothings.transltr.io/ttd/query?q=_exists_:subject.ttd_drug_id%20AND%20(NOT%20_exists_:subject.pubchem_compound)%20AND%20_exists_:object.mondo%20AND%20association.predicate:%22biolink:treats%22 - ## 2240 records + - qInput: "MONDO:0021094" ## Human immunodeficiency virus infection / immunodeficiency disease? + oneOutput: "TTD.DRUG:D03RYN" ## Cytolin + ttd_drug_id_clinicalTrialTreats_mondo: + ## url: https://biothings.transltr.io/ttd/query?q=_exists_:subject.ttd_drug_id%20AND%20(NOT%20_exists_:subject.pubchem_compound)%20AND%20_exists_:object.mondo%20AND%20association.predicate:%22biolink:treats%22%20AND%20NOT%20(association.clinical_trial.status:approved%20OR%20association.clinical_trial.status:%22phase%204%22%20OR%20association.clinical_trial.status:%22approved%20(orphan%20drug)%22%20OR%20association.clinical_trial.status:%22NDA%20filed%22%20OR%20association.clinical_trial.status:investigative%20OR%20association.clinical_trial.status:patented%20OR%20association.clinical_trial.status:%22discontinued%20in%20preregistration%22%20OR%20association.clinical_trial.status:preregistration%20OR%20association.clinical_trial.status:%22withdrawn%20from%20market%22%20OR%20association.clinical_trial.status:preclinical) + ## 1502 records ## exists: subject.ttd_drug_id, association.predicate.biolink:treats, object.mondo ## not exists: subject.pubchem_compound - supportBatch: true @@ -891,17 +1590,24 @@ components: object.name, subject.name size: 1000 - filter: _exists_:subject.ttd_drug_id AND (NOT _exists_:subject.pubchem_compound) AND _exists_:object.mondo AND association.predicate:"biolink:treats" - predicate: treats + filter: >- + _exists_:subject.ttd_drug_id AND (NOT _exists_:subject.pubchem_compound) AND + _exists_:object.mondo AND association.predicate:"biolink:treats" AND NOT + (association.clinical_trial.status:approved OR association.clinical_trial.status:"phase 4" OR + association.clinical_trial.status:"approved (orphan drug)" OR association.clinical_trial.status:"NDA filed" OR + association.clinical_trial.status:investigative OR association.clinical_trial.status:patented OR + association.clinical_trial.status:"discontinued in preregistration" OR association.clinical_trial.status:preregistration OR + association.clinical_trial.status:"withdrawn from market" OR association.clinical_trial.status:preclinical) + predicate: in_clinical_trials_for source: "infores:ttd" knowledge_level: knowledge_assertion agent_type: manual_agent response_mapping: "$ref": "#/components/x-bte-response-mapping/mondo-object" testExamples: - - qInput: "TTD.DRUG:DZJ3D5" ## PF-07220060 - oneOutput: "MONDO:0008315" ## Prostate cancer - ttd_drug_id_treats_mondo-rev: + - qInput: "TTD.DRUG:D02CFV" ## Solubilized type 1 native bovine collagen + oneOutput: "MONDO:0005100" ## Scleroderma / systemic sclerosis + ttd_drug_id_clinicalTrialTreats_mondo-rev: - supportBatch: true useTemplating: true inputs: @@ -920,19 +1626,26 @@ components: subject.name, object.name size: 1000 - filter: _exists_:subject.ttd_drug_id AND (NOT _exists_:subject.pubchem_compound) AND _exists_:object.mondo AND association.predicate:"biolink:treats" - predicate: treated_by + filter: >- + _exists_:subject.ttd_drug_id AND (NOT _exists_:subject.pubchem_compound) AND + _exists_:object.mondo AND association.predicate:"biolink:treats" AND NOT + (association.clinical_trial.status:approved OR association.clinical_trial.status:"phase 4" OR + association.clinical_trial.status:"approved (orphan drug)" OR association.clinical_trial.status:"NDA filed" OR + association.clinical_trial.status:investigative OR association.clinical_trial.status:patented OR + association.clinical_trial.status:"discontinued in preregistration" OR association.clinical_trial.status:preregistration OR + association.clinical_trial.status:"withdrawn from market" OR association.clinical_trial.status:preclinical) + predicate: tested_by_clinical_trials_of source: "infores:ttd" knowledge_level: knowledge_assertion agent_type: manual_agent response_mapping: "$ref": "#/components/x-bte-response-mapping/ttd_drug_id-subject" testExamples: - - qInput: "MONDO:0019056" ## Myasthenia gravis / neuromuscular disease?? - oneOutput: "TTD.DRUG:DZA98D" ## ARGX-113 + - qInput: "MONDO:0008315" ## Prostate cancer + oneOutput: "TTD.DRUG:D02DWX" ## Prostvac-VF ttd_drug_id_treats_icd11: - ## url: https://biothings.transltr.io/ttd/query?q=_exists_:subject.ttd_drug_id%20AND%20association.predicate:%22biolink:treats%22%20AND%20_exists_:object.icd11%20AND%20NOT%20_exists_:object.mondoAND%20NOT%20_exists_:subject.pubchem_compound - ## 16,956 records + ## url: https://biothings.transltr.io/ttd/query?q=_exists_:subject.ttd_drug_id%20AND%20association.predicate:%22biolink:treats%22%20AND%20_exists_:object.icd11%20AND%20NOT%20_exists_:object.mondo%20AND%20NOT%20_exists_:subject.pubchem_compound%20AND%20(association.clinical_trial.status:approved%20OR%20association.clinical_trial.status:%22phase%204%22%20OR%20association.clinical_trial.status:%22approved%20(orphan%20drug)%22%20OR%20association.clinical_trial.status:%22NDA%20filed%22) + ## 795 records ## exists: subject.ttd_drug_id, association.predicate.biolink:treats, object.icd11 ## not exists: subject.pubchem_compound, object.mondo - supportBatch: true @@ -957,9 +1670,11 @@ components: subject.name size: 1000 filter: >- - _exists_:subject.ttd_drug_id AND (NOT _exists_:subject.pubchem_compound) AND - _exists_:object.icd11 AND (NOT _exists_:object.mondo) AND - association.predicate:"biolink:treats" + _exists_:subject.ttd_drug_id AND (NOT _exists_:subject.pubchem_compound) AND + _exists_:object.icd11 AND (NOT _exists_:object.mondo) AND + association.predicate:"biolink:treats" AND + (association.clinical_trial.status:approved OR association.clinical_trial.status:"phase 4" OR + association.clinical_trial.status:"approved (orphan drug)" OR association.clinical_trial.status:"NDA filed") predicate: treats source: "infores:ttd" knowledge_level: knowledge_assertion @@ -967,8 +1682,8 @@ components: response_mapping: "$ref": "#/components/x-bte-response-mapping/icd11-object" testExamples: - - qInput: "TTD.DRUG:DZW53X" ## GSK4069889 - oneOutput: "ICD11:2C25" ## Non-small cell lung cancer + - qInput: "TTD.DRUG:D0A5DJ" ## Pancrecarb + oneOutput: "ICD11:DC30-DC3Z" ## Pancreatic malfunction ttd_drug_id_treats_icd11-rev: - supportBatch: true useTemplating: true @@ -990,19 +1705,258 @@ components: subject.name, object.name size: 1000 + filter: >- + _exists_:subject.ttd_drug_id AND (NOT _exists_:subject.pubchem_compound) AND + _exists_:object.icd11 AND (NOT _exists_:object.mondo) AND + association.predicate:"biolink:treats" AND + (association.clinical_trial.status:approved OR association.clinical_trial.status:"phase 4" OR + association.clinical_trial.status:"approved (orphan drug)" OR association.clinical_trial.status:"NDA filed") + predicate: treated_by + source: "infores:ttd" + knowledge_level: knowledge_assertion + agent_type: manual_agent + response_mapping: + "$ref": "#/components/x-bte-response-mapping/ttd_drug_id-subject" + testExamples: + - qInput: "ICD11:3B64.10" ## Idiopathic thrombocytopenic purpura + oneOutput: "TTD.DRUG:D09WZV" ## GMA-161 + ttd_drug_id_studiedToTreat_icd11: + ## url: https://biothings.transltr.io/ttd/query?q=_exists_:subject.ttd_drug_id%20AND%20association.predicate:%22biolink:treats%22%20AND%20_exists_:object.icd11%20AND%20NOT%20_exists_:object.mondo%20AND%20NOT%20_exists_:subject.pubchem_compound%20AND%20(association.clinical_trial.status:investigative%20OR%20association.clinical_trial.status:patented%20OR%20association.clinical_trial.status:%22discontinued%20in%20preregistration%22%20OR%20association.clinical_trial.status:preregistration%20OR%20association.clinical_trial.status:%22withdrawn%20from%20market%22) + ## 5000 records + ## exists: subject.ttd_drug_id, association.predicate.biolink:treats, object.icd11 + ## not exists: subject.pubchem_compound, object.mondo + - supportBatch: true + useTemplating: true ## flag to say templating is being used below + inputs: + - id: "TTD.DRUG" + semantic: SmallMolecule + requestBody: ## no prefix + body: + q: "{{ queryInputs | rmPrefix() }}" + scopes: subject.ttd_drug_id + outputs: + - id: ICD11 + semantic: Disease + parameters: + ## not including these fields due to data-processing / biolink-modeling issues + ## - association.clinical_trial.status + ## - object.mondo Not all object node has mondo + fields: >- + object.icd11, + object.name, + subject.name + size: 1000 + filter: >- + _exists_:subject.ttd_drug_id AND (NOT _exists_:subject.pubchem_compound) AND + _exists_:object.icd11 AND (NOT _exists_:object.mondo) AND + association.predicate:"biolink:treats" AND + (association.clinical_trial.status:investigative OR association.clinical_trial.status:patented OR + association.clinical_trial.status:"discontinued in preregistration" OR association.clinical_trial.status:preregistration OR + association.clinical_trial.status:"withdrawn from market") + predicate: studied_to_treat + source: "infores:ttd" + knowledge_level: knowledge_assertion + agent_type: manual_agent + response_mapping: + "$ref": "#/components/x-bte-response-mapping/icd11-object" + testExamples: + - qInput: "TTD.DRUG:D0DG0P" ## Triflupromazine + oneOutput: "ICD11:6A20" ## Schizophrenia + ttd_drug_id_studiedToTreat_icd11-rev: + - supportBatch: true + useTemplating: true + inputs: + - id: ICD11 + semantic: Disease + requestBody: ## no prefix + body: + q: "{{ queryInputs | rmPrefix() }}" + scopes: object.icd11 + outputs: + - id: "TTD.DRUG" + semantic: SmallMolecule + parameters: + ## not including these fields due to data-processing / biolink-modeling issues + ## - association.clinical_trial.status + fields: >- + subject.ttd_drug_id, + subject.name, + object.name + size: 1000 + filter: >- + _exists_:subject.ttd_drug_id AND (NOT _exists_:subject.pubchem_compound) AND + _exists_:object.icd11 AND (NOT _exists_:object.mondo) AND + association.predicate:"biolink:treats" AND + (association.clinical_trial.status:investigative OR association.clinical_trial.status:patented OR + association.clinical_trial.status:"discontinued in preregistration" OR association.clinical_trial.status:preregistration OR + association.clinical_trial.status:"withdrawn from market") + predicate: treated_in_studies_by + source: "infores:ttd" + knowledge_level: knowledge_assertion + agent_type: manual_agent + response_mapping: + "$ref": "#/components/x-bte-response-mapping/ttd_drug_id-subject" + testExamples: + - qInput: "ICD11:1F40-1F45" ## Malaria + oneOutput: "TTD.DRUG:D0YQ9P" ## Amodiaquine + ttd_drug_id_preclinicalTreats_icd11: + ## url: https://biothings.transltr.io/ttd/query?q=_exists_:subject.ttd_drug_id%20AND%20association.predicate:%22biolink:treats%22%20AND%20_exists_:object.icd11%20AND%20NOT%20_exists_:object.mondoAND%20NOT%20_exists_:subject.pubchem_compound%20AND%20association.clinical_trial.status:preclinical + ## 335 records + ## exists: subject.ttd_drug_id, association.predicate.biolink:treats, object.icd11 + ## not exists: subject.pubchem_compound, object.mondo + - supportBatch: true + useTemplating: true ## flag to say templating is being used below + inputs: + - id: "TTD.DRUG" + semantic: SmallMolecule + requestBody: ## no prefix + body: + q: "{{ queryInputs | rmPrefix() }}" + scopes: subject.ttd_drug_id + outputs: + - id: ICD11 + semantic: Disease + parameters: + ## not including these fields due to data-processing / biolink-modeling issues + ## - association.clinical_trial.status + ## - object.mondo Not all object node has mondo + fields: >- + object.icd11, + object.name, + subject.name + size: 1000 filter: >- _exists_:subject.ttd_drug_id AND (NOT _exists_:subject.pubchem_compound) AND _exists_:object.icd11 AND (NOT _exists_:object.mondo) AND - association.predicate:"biolink:treats" - predicate: treated_by + association.predicate:"biolink:treats" AND + association.clinical_trial.status:preclinical + predicate: in_preclinical_trials_for + source: "infores:ttd" + knowledge_level: knowledge_assertion + agent_type: manual_agent + response_mapping: + "$ref": "#/components/x-bte-response-mapping/icd11-object" + testExamples: + - qInput: "TTD.DRUG:D01ZCL" ## ACT-N + oneOutput: "ICD11:NA07.Z" ## Brain injury + ttd_drug_id_preclinicalTreats_icd11-rev: + - supportBatch: true + useTemplating: true + inputs: + - id: ICD11 + semantic: Disease + requestBody: ## no prefix + body: + q: "{{ queryInputs | rmPrefix() }}" + scopes: object.icd11 + outputs: + - id: "TTD.DRUG" + semantic: SmallMolecule + parameters: + ## not including these fields due to data-processing / biolink-modeling issues + ## - association.clinical_trial.status + fields: >- + subject.ttd_drug_id, + subject.name, + object.name + size: 1000 + filter: >- + _exists_:subject.ttd_drug_id AND (NOT _exists_:subject.pubchem_compound) AND + _exists_:object.icd11 AND (NOT _exists_:object.mondo) AND + association.predicate:"biolink:treats" AND + association.clinical_trial.status:preclinical + predicate: tested_by_preclinical_trials_of + source: "infores:ttd" + knowledge_level: knowledge_assertion + agent_type: manual_agent + response_mapping: + "$ref": "#/components/x-bte-response-mapping/ttd_drug_id-subject" + testExamples: + - qInput: "ICD11:1D64" ## Middle East Respiratory Syndrome (MERS) + oneOutput: "TTD.DRUG:D0CR6E" ## SSYA10-001 + ttd_drug_id_clinicalTrialTreats_icd11: + ## url: https://biothings.transltr.io/ttd/query?q=_exists_:subject.ttd_drug_id%20AND%20association.predicate:%22biolink:treats%22%20AND%20_exists_:object.icd11%20AND%20NOT%20_exists_:object.mondoAND%20NOT%20_exists_:subject.pubchem_compound%20AND%20NOT%20(association.clinical_trial.status:approved%20OR%20association.clinical_trial.status:%22phase%204%22%20OR%20association.clinical_trial.status:%22approved%20(orphan%20drug)%22%20OR%20association.clinical_trial.status:%22NDA%20filed%22%20OR%20association.clinical_trial.status:investigative%20OR%20association.clinical_trial.status:patented%20OR%20association.clinical_trial.status:%22discontinued%20in%20preregistration%22%20OR%20association.clinical_trial.status:preregistration%20OR%20association.clinical_trial.status:%22withdrawn%20from%20market%22%20OR%20association.clinical_trial.status:preclinical) + ## 8586 records + ## exists: subject.ttd_drug_id, association.predicate.biolink:treats, object.icd11 + ## not exists: subject.pubchem_compound, object.mondo + - supportBatch: true + useTemplating: true ## flag to say templating is being used below + inputs: + - id: "TTD.DRUG" + semantic: SmallMolecule + requestBody: ## no prefix + body: + q: "{{ queryInputs | rmPrefix() }}" + scopes: subject.ttd_drug_id + outputs: + - id: ICD11 + semantic: Disease + parameters: + ## not including these fields due to data-processing / biolink-modeling issues + ## - association.clinical_trial.status + ## - object.mondo Not all object node has mondo + fields: >- + object.icd11, + object.name, + subject.name + size: 1000 + filter: >- + _exists_:subject.ttd_drug_id AND (NOT _exists_:subject.pubchem_compound) AND + _exists_:object.icd11 AND (NOT _exists_:object.mondo) AND + association.predicate:"biolink:treats" AND NOT + (association.clinical_trial.status:approved OR association.clinical_trial.status:"phase 4" OR + association.clinical_trial.status:"approved (orphan drug)" OR association.clinical_trial.status:"NDA filed" OR + association.clinical_trial.status:investigative OR association.clinical_trial.status:patented OR + association.clinical_trial.status:"discontinued in preregistration" OR association.clinical_trial.status:preregistration OR + association.clinical_trial.status:"withdrawn from market" OR association.clinical_trial.status:preclinical) + predicate: in_clinical_trials_for + source: "infores:ttd" + knowledge_level: knowledge_assertion + agent_type: manual_agent + response_mapping: + "$ref": "#/components/x-bte-response-mapping/icd11-object" + testExamples: + - qInput: "TTD.DRUG:D01YDH" ## GSK2981710 + oneOutput: "ICD11:8A20" ## Alzheimer disease + ttd_drug_id_clinicalTrialTreats_icd11-rev: + - supportBatch: true + useTemplating: true + inputs: + - id: ICD11 + semantic: Disease + requestBody: ## no prefix + body: + q: "{{ queryInputs | rmPrefix() }}" + scopes: object.icd11 + outputs: + - id: "TTD.DRUG" + semantic: SmallMolecule + parameters: + ## not including these fields due to data-processing / biolink-modeling issues + ## - association.clinical_trial.status + fields: >- + subject.ttd_drug_id, + subject.name, + object.name + size: 1000 + filter: >- + _exists_:subject.ttd_drug_id AND (NOT _exists_:subject.pubchem_compound) AND + _exists_:object.icd11 AND (NOT _exists_:object.mondo) AND + association.predicate:"biolink:treats" AND NOT + (association.clinical_trial.status:approved OR association.clinical_trial.status:"phase 4" OR + association.clinical_trial.status:"approved (orphan drug)" OR association.clinical_trial.status:"NDA filed" OR + association.clinical_trial.status:investigative OR association.clinical_trial.status:patented OR + association.clinical_trial.status:"discontinued in preregistration" OR association.clinical_trial.status:preregistration OR + association.clinical_trial.status:"withdrawn from market" OR association.clinical_trial.status:preclinical) + predicate: tested_by_clinical_trials_of source: "infores:ttd" knowledge_level: knowledge_assertion agent_type: manual_agent response_mapping: "$ref": "#/components/x-bte-response-mapping/ttd_drug_id-subject" testExamples: - - qInput: "ICD11:1D48" ## Zika virus infection - oneOutput: "TTD.DRUG:DZTL59" ## INO-A002 + - qInput: "ICD11:2A83" ## Multiple myeloma + oneOutput: "TTD.DRUG:D01YZF" ## CART-BCMA uniprotkb_target_for_mondo: ## url: https://biothings.transltr.io/ttd/query?q=_exists_:subject.uniprotkb%20AND%20association.predicate:%22biolink:target_for%22%20AND%20_exists_:object.mondo ## 601 records diff --git a/uberon/smartapi.yaml b/uberon/smartapi.yaml index 8e1a2e02..81125a71 100644 --- a/uberon/smartapi.yaml +++ b/uberon/smartapi.yaml @@ -17,7 +17,7 @@ info: component: KP team: - Service Provider - biolink-version: "3.5.0" + biolink-version: "4.1.6" servers: - description: Encrypted Production server url: https://biothings.ncats.io/uberon