Vulgar is Verbose Useful Labelled Gapped Alignment Report, This format also starts with the same 9 fields as SUGAR output, and is followed by a series of <label, query_length, target_length> triplets. The label may be one of the following:
Operator | Description |
---|---|
M | Match |
C | Codon |
G | Gap |
N | Non-equivalenced region |
5 | 5' splice site |
3 | 3' splice site |
I | Intron |
S | Split codon |
F | Frameshift |
The format seems to have been originally develloped for the Exonerate tool. The F seems to have been used for the definition of the GFF3 gap attribute that use the CIGAR string as reference.