From af5b3dcac43e83a233f916a23bac15bb43e4969c Mon Sep 17 00:00:00 2001 From: betolink Date: Tue, 1 Aug 2023 19:49:53 -0500 Subject: [PATCH] update environment --- .github/workflows/build.yml | 51 ++-- CHANGELOG.md | 9 + README.md | 2 +- ci/conda-linux-64.lock | 482 ++++++++++++++++++------------------ ci/conda-osx-64.lock | 462 ---------------------------------- ci/environment.yml | 15 +- ci/requirements.txt | 1 + ci/start | 2 +- 8 files changed, 284 insertions(+), 740 deletions(-) create mode 100644 CHANGELOG.md delete mode 100644 ci/conda-osx-64.lock diff --git a/.github/workflows/build.yml b/.github/workflows/build.yml index c994ba7..dc529be 100644 --- a/.github/workflows/build.yml +++ b/.github/workflows/build.yml @@ -1,8 +1,8 @@ name: Build and push Docker image on: push: - tags: - - 'v*' + release: + types: [published] jobs: build-and-push-docker: @@ -29,45 +29,28 @@ jobs: run: | SHA7="${GITHUB_SHA::7}" DOCKER_TAG=$SHA7 - echo $DOCKER_TAG > docker-tag.txt + echo "RELEASE_DATE=$(date +'%Y-%m-%d')" >> $GITHUB_ENV echo "DOCKER_TAG=${DOCKER_TAG}" >> $GITHUB_ENV - - name: Upload docker tag - uses: actions/upload-artifact@v3 - with: - name: docker-tag - path: docker-tag.txt + - name: "Set up QEMU" + uses: docker/setup-qemu-action@v2 + + - name: "Set up Docker Buildx" + uses: docker/setup-buildx-action@v2 - - name: "Build and Publish to DockerHub" - uses: elgohr/Publish-Docker-Github-Action@2.12 + - name: "Login to Docker Hub" + uses: docker/login-action@v2 with: - name: openscapes/python username: openscapes password: ${{ secrets.DOCKERHUB_TOKEN }} - workdir: ci - tags: "main, ${{env.DOCKER_TAG}}" + + - name: "Build and push" + uses: docker/build-push-action@v4 + with: + context: ci + push: true + tags: openscapes/python:latest, openscapes/python:${{ env.RELEASE_DATE }} - name: Export Full Conda Environment run: | docker run openscapes/python:main conda list --export - - update-hub-image: - runs-on: ubuntu-latest - if: github.event_name == 'push' && startsWith(github.event.ref, 'refs/tags/v') - needs: build-and-push-docker - steps: - - name: get docker tag - uses: actions/download-artifact@v3 - with: - name: docker-tag - - shell: bash - run: | - DOCKER_TAG=`cat docker-tag.txt` - echo "DOCKER_TAG=${DOCKER_TAG}" >> $GITHUB_ENV - - name: Push new image to hub - shell: bash - env: - JUPYTERHUB_TOKEN: ${{ secrets.HUB_TOKEN }} - run: | - echo $DOCKER_TAG - curl -Lv "https://staging.openscapes.2i2c.cloud/services/configurator/config" -X POST -H "Content-Type: application/json" -H "Authorization: token ${{env.JUPYTERHUB_TOKEN}}" --data '{"Spawner.default_url":"/lab","KubeSpawner.image":"openscapes/python:${{env.DOCKER_TAG}}"}' diff --git a/CHANGELOG.md b/CHANGELOG.md new file mode 100644 index 0000000..888ae37 --- /dev/null +++ b/CHANGELOG.md @@ -0,0 +1,9 @@ +## corn v2023.08.01 + +* using earthaccess v0.5.3 +* pinned netcdf to 1.6.4 but still getting libnetcdf 1.9.2 via conda +* added quarto jupyterlab extension +* jupyter-resource-uage got updated to 1.0 +* removing pangeo-notebook and using the Jupyter packages directly +* using official docker action to build and push image + diff --git a/README.md b/README.md index 3894d01..ec2b713 100644 --- a/README.md +++ b/README.md @@ -3,7 +3,7 @@ Jupyterhub base image for the [NASA Openscapes Hub](https://nasa-openscapes.github.io/2021-Cloud-Hackathon/) ![](https://img.shields.io/docker/image-size/openscapes/corn?sort=date) - + ## Overview diff --git a/ci/conda-linux-64.lock b/ci/conda-linux-64.lock index a13d16f..bb4ece7 100644 --- a/ci/conda-linux-64.lock +++ b/ci/conda-linux-64.lock @@ -1,31 +1,31 @@ # Generated by conda-lock. # platform: linux-64 -# input_hash: 8b547b373d85bf866379dfcff2ff34d8c37db48e568a5e1be895db9ca1fbc133 +# input_hash: 769a06cd19598d17bc0e5ae6ec8481ddbe13fcf8b8dfd8d73f19c809516f7a43 @EXPLICIT https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81 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-https://conda.anaconda.org/conda-forge/noarch/icepyx-0.7.0-pyhd8ed1ab_0.conda#03cf6dbe3a74ae873628057eb1167d80 -https://conda.anaconda.org/conda-forge/noarch/pangeo-notebook-2023.05.02-hd8ed1ab_0.conda#f2d3b0411d293f8e09047cea601b9577 diff --git a/ci/environment.yml b/ci/environment.yml index 124e8e1..155d1f7 100644 --- a/ci/environment.yml +++ b/ci/environment.yml @@ -3,13 +3,12 @@ channels: - conda-forge dependencies: - python=3.9 - - pangeo-notebook - dask - distributed - rioxarray - xarray>=2022.12 - h5netcdf - - netcdf4 + - netcdf4=1.6.4 - h5py - gdal~=3.6 - libgdal @@ -34,25 +33,27 @@ dependencies: - pydap - lxml - ipyleaflet + - dask-labextension + - jupyterlab>=4.0 + - jupyter-server-proxy + - jupyterhub-singleuser - jupyterlab-geojson - jupyterlab-git - jupyter-resource-usage - - jupyterlab-link-share + - jupyter-collaboration - jupyterlab-h5web - hdf5plugin - ipympl - conda-lock - pooch - - earthaccess>=0.5.1 + - earthaccess>=0.5.3 - rasterstats - kerchunk - rechunker - pqdm - coiled - s3fs - - jinja2~=3.0.3 - - nbgitpuller~=1.1.0 + - nbgitpuller - pip platforms: - linux-64 - - osx-64 diff --git a/ci/requirements.txt b/ci/requirements.txt index 3e88f4b..cc5b152 100644 --- a/ci/requirements.txt +++ b/ci/requirements.txt @@ -1 +1,2 @@ harmony-py +jupyterlab-quarto diff --git a/ci/start b/ci/start index 649c69c..251b73b 100644 --- a/ci/start +++ b/ci/start @@ -6,4 +6,4 @@ export PANGEO_ENV="openscapes" # ==== ONLY EDIT WITHIN THIS BLOCK ===== -exec "$@" +exec "$@" --ResourceUseDisplay.track_cpu_percent=True