Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Improvements/issues with Genome Page #9

Open
cshenry opened this issue Aug 10, 2015 · 1 comment
Open

Improvements/issues with Genome Page #9

cshenry opened this issue Aug 10, 2015 · 1 comment

Comments

@cshenry
Copy link

cshenry commented Aug 10, 2015

I went to this genome page:
http://140.221.67.62/#/genome/plantseed/Genomes/Alyrata-v.1.0

Here's my feedback:
1.) There is never anything in the subsystems column. This seems like a mistake.

2.) I think we should show gene aliases if we've got them, with links to the source of each type of alias

3.) What's going on with the gene IDs? Is this right "fgenesh2_kg.6__1213__AT5G12330.3"? Did we forget to do some formatting?

@samseaver
Copy link
Contributor

I've yet to update subsystems, that's easy.

Will work on aliases but I don't think we need them here, I'd rather we have them in the feature viewer.

A. lyrata was sequenced as a draft 'companion' genome for A. thaliana, as such, nobody really made an effort with the gene ids. That value is a 'true' id for A. lyrata, and indicates that its the ortholog of the indicated A. thaliana gene.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants