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Plant Model page does not currently load for some reason #8
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yeah, the links use whatever is available at /plantseed/Models (http://140.221.67.62/#/data/plantseed/Models). I think Sam needs to build the models. The only model currently there is the hidden .Athaliana-TAIR10_Model . |
Yes, I was testing/playing with Athaliana, I'll do the others tonight. |
All PlantSEED models reconstructed and gapfilled. Model links appear to be working. |
The 'view model' links should be fixed and deployed. We should reduce the size of the plantseed images if we have time. |
Hey guys, On the PlantSEED model viewer, the gene links are broken. For PlantSEED models, the gene links need to go to our feature page� not PATRIC. Chris On Aug 10, 2015, at 5:39 PM, nconrad [email protected] wrote:
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Also, I understand that for public models, we can�t offer a �runfba� or �gapfill� button, but can we have a �Copy model� button? This would copy the model to my own workspace? Then I would see the model on the �My models� menu, and I could runfba or gap filling. On Aug 10, 2015, at 5:42 PM, Christopher Henry [email protected] wrote:
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This might be nice to have on the genomes page too. Like right below the �view model� link, could I have a �copy genome� link, which would copy the genome to my workspace. We could add �copy_model� and �copy_genome� commands to the API. What do we think? Chris On Aug 10, 2015, at 5:45 PM, Christopher Henry [email protected] wrote:
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Fine with me. Since there are hidden directories involved (right?), the api calls would be good to have. |
oh, it'd also be nice if the copy_model can return the same structure as list_models. |
Exactly. On Aug 10, 2015, at 5:55 PM, nconrad [email protected] wrote:
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Is copy_genome really needed? The genome is already being copied by ModelReconstruction(). |
It is for PlantSEED, because PlantSEED is going to permit the modification of genome annotations� thus, genomes have to be owned by users� In the long run� I think we are going to merge the concept of genome and model together in ModelSEED/PlantSEED. For now though, they will be separate objects. On Aug 11, 2015, at 8:11 AM, Mike Mundy [email protected] wrote:
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I clicked on the "View model" link on a plant genome and got here:
http://140.221.67.62/#/model/plantseed/Models/Alyrata-v.1.0
But I was left with an empty page...
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