Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

change default sbatch options #29

Open
rmcminds opened this issue Mar 15, 2023 · 0 comments
Open

change default sbatch options #29

rmcminds opened this issue Mar 15, 2023 · 0 comments

Comments

@rmcminds
Copy link
Contributor

though in the long term i should convert these workflows to be agnostic to the system and scheduler, for now it is convenient to have them pre-written for the USF hpc. My former default method of parallel cpus is not ideal, because --ntasks can spread the number of assigned cpus across multiple nodes, and almost all of my scripts use multithreading, not mpi. i should intead specify that i only want a single node per script, and use --cpus-per-node for multithreading purposes.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant