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Missing UTR Lengths #4

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mfansler opened this issue Feb 24, 2021 · 0 comments
Open

Missing UTR Lengths #4

mfansler opened this issue Feb 24, 2021 · 0 comments

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@mfansler
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Some transcripts are missing 3' UTR lengths (utr_length).

df_utrs <- read_tsv("20201111-txs_utr_metadata_lengths.tsv",
                    col_types='cc_______l__d___d____d_c_il',
                    col_names=c("transcript_id", "gene_id", "is_ipa", "utr_usage_no_ipa",
                                "ncelltypes", "n_utrs", "utr_type", "utr_length", "improper"), skip=1)

df_utrs %>% filter(is.na(utr_length)) %>% print(n=Inf)

Output

# A tibble: 307 x 9
    transcript_id   gene_id               is_ipa utr_usage_no_ipa ncelltypes n_utrs utr_type utr_length improper
    <chr>           <chr>                 <lgl>             <dbl>      <dbl>  <dbl> <chr>         <int> <lgl>   
  1 1700014D04Rik.1 ENSMUSG00000051054.4  FALSE         0.1                0      2 multi            NA NA      
  2 4932415D10Rik.1 ENSMUSG00000044581.8  FALSE         0                  0      0 single           NA NA      
  3 5730522E02Rik.1 ENSMUSG00000032985.15 TRUE          0                  0      1 single           NA NA      
  4 6720489N17Rik.2 ENSMUSG00000072066.7  FALSE         0.116             12      4 multi            NA NA      
  5 A630010A05Rik.1 ENSMUSG00000075395.11 FALSE         1                  0      1 single           NA NA      
  6 Adgrg4.1        ENSMUSG00000053852.11 FALSE         0                  0      1 single           NA NA      
  7 Ank2.1          ENSMUSG00000032826.17 FALSE         0.000311           0      2 multi            NA NA      
  8 Ankrd17.1       ENSMUSG00000055204.15 TRUE          0                  0      3 multi            NA NA      
  9 Ankrd65.1       ENSMUSG00000078487.8  FALSE         1                  0      1 single           NA NA      
 10 Auts2.1         ENSMUSG00000029673.17 FALSE         0.0181             1      5 multi            NA NA      
 11 Auts2.2         ENSMUSG00000029673.17 FALSE         0.0199             2      5 multi            NA NA      
 12 Ccdc188.1       ENSMUSG00000090777.2  FALSE         0                  0      1 single           NA NA      
 13 Cd300ld2.1      ENSMUSG00000089753.9  FALSE         0.979              0      1 single           NA NA      
 14 Cdh4.2          ENSMUSG00000000305.12 TRUE          0                  0      1 single           NA NA      
 15 Cep128.1        ENSMUSG00000061533.16 FALSE         0.282             19      3 multi            NA NA      
 16 Col6a3.2        ENSMUSG00000048126.16 FALSE         1                  1      1 single           NA NA      
 17 Col6a5.1        ENSMUSG00000091345.9  TRUE          0                  0      2 multi            NA NA      
 18 D930007J09Rik.1 ENSMUSG00000042874.1  FALSE         1                  0      1 single           NA NA      
 19 Dcdc2c.1        ENSMUSG00000020633.14 TRUE          0                  0      1 single           NA NA      
 20 Dnah12.1        ENSMUSG00000021879.13 FALSE         0.239              0      2 multi            NA NA      
 21 Dnah7c.1        ENSMUSG00000101337.6  FALSE         0.293              0      2 multi            NA NA      
 22 Elobl.1         ENSMUSG00000057534.13 FALSE         0                  0      1 single           NA NA      
 23 Fcho2.1         ENSMUSG00000041685.16 TRUE          0                  0      1 single           NA NA      
 24 Flg.1           ENSMUSG00000102439.4  FALSE         0.00111            0      1 single           NA NA      
 25 Flg.2           ENSMUSG00000102439.4  FALSE         0                  0      1 single           NA NA      
 26 Flg.3           ENSMUSG00000102439.4  FALSE         0                  0      1 single           NA NA      
 27 Flg.4           ENSMUSG00000102439.4  FALSE         0                  0      1 single           NA NA      
 28 Flg.5           ENSMUSG00000102439.4  FALSE         0.000186           0      1 single           NA NA      
 29 Flg.6           ENSMUSG00000102439.4  FALSE         0.00111            0      1 single           NA NA      
 30 Flg.7           ENSMUSG00000102439.4  FALSE         0.000186           0      1 single           NA NA      
 31 Galntl6.1       ENSMUSG00000096914.3  FALSE         0.411              2      3 multi            NA NA      
 32 Gm10128.1       ENSMUSG00000063277.7  FALSE         0                  0      0 single           NA NA      
 33 Gm10130.1       ENSMUSG00000095315.1  FALSE         1                  0      1 single           NA NA      
 34 Gm10139.1       ENSMUSG00000063905.2  FALSE         1                  0      1 single           NA NA      
 35 Gm10160.1       ENSMUSG00000066378.3  FALSE         1                 24      1 single           NA NA      
 36 Gm10181.1       ENSMUSG00000066810.2  FALSE         1                 23      1 single           NA NA      
 37 Gm10197.1       ENSMUSG00000067085.1  FALSE         1                  0      1 single           NA NA      
 38 Gm10198.1       ENSMUSG00000067122.2  FALSE         0                  0      0 single           NA NA      
 39 Gm10203.1       ENSMUSG00000067292.3  FALSE         1                  4      1 single           NA NA      
 40 Gm10217.1       ENSMUSG00000067627.2  FALSE         1                 13      1 single           NA NA      
 41 Gm10226.1       ENSMUSG00000067929.3  FALSE         1                  0      1 single           NA NA      
 42 Gm10234.1       ENSMUSG00000068181.1  FALSE         0                  0      0 single           NA NA      
 43 Gm10271.1       ENSMUSG00000069518.5  FALSE         1                  0      1 single           NA NA      
 44 Gm10337.1       ENSMUSG00000071586.4  FALSE         1                  0      1 single           NA NA      
 45 Gm10338.1       ENSMUSG00000094706.7  TRUE          0                  0      0 multi            NA NA      
 46 Gm10340.1       ENSMUSG00000071613.11 TRUE          0                  0      0 multi            NA NA      
 47 Gm10378.1       ENSMUSG00000093948.7  FALSE         0                  0      0 multi            NA NA      
 48 Gm10413.1       ENSMUSG00000095533.7  TRUE          0                  0      0 multi            NA NA      
 49 Gm10424.1       ENSMUSG00000096066.4  FALSE         0                  0      0 multi            NA NA      
 50 Gm10477.1       ENSMUSG00000073173.1  FALSE         1                  0      1 single           NA NA      
 51 Gm10490.1       ENSMUSG00000073290.1  FALSE         1                  5      1 single           NA NA      
 52 Gm10491.1       ENSMUSG00000073291.3  FALSE         1                  8      1 single           NA NA      
 53 Gm10563.1       ENSMUSG00000073682.3  FALSE         1                 44      1 single           NA NA      
 54 Gm10663.1       ENSMUSG00000074302.1  FALSE         0                  0      0 single           NA NA      
 55 Gm10715.1       ENSMUSG00000096201.1  FALSE         1                  0      1 single           NA NA      
 56 Gm10715.2       ENSMUSG00000096201.1  FALSE         0                  0      1 single           NA NA      
 57 Gm10717.1       ENSMUSG00000095891.7  FALSE         0                  0      1 single           NA NA      
 58 Gm10717.2       ENSMUSG00000095891.7  TRUE          0                  0      1 single           NA NA      
 59 Gm10717.3       ENSMUSG00000095891.7  TRUE          0                  0      1 single           NA NA      
 60 Gm10717.4       ENSMUSG00000095891.7  FALSE         0                  0      1 single           NA NA      
 61 Gm10717.6       ENSMUSG00000095891.7  TRUE          0                  0      1 single           NA NA      
 62 Gm10717.7       ENSMUSG00000095891.7  FALSE         1                  0      1 single           NA NA      
 63 Gm10717.8       ENSMUSG00000095891.7  TRUE          0                  0      1 single           NA NA      
 64 Gm10717.9       ENSMUSG00000095891.7  FALSE         0                  0      1 single           NA NA      
 65 Gm10718.1       ENSMUSG00000095186.1  FALSE         1                  0      1 single           NA NA      
 66 Gm10719.1       ENSMUSG00000095547.1  FALSE         0.455              0      2 multi            NA NA      
 67 Gm10719.2       ENSMUSG00000095547.1  FALSE         0.455              0      2 multi            NA NA      
 68 Gm10719.3       ENSMUSG00000095547.1  FALSE         0.0909             0      2 multi            NA NA      
 69 Gm10720.1       ENSMUSG00000074564.3  FALSE         1                  0      1 single           NA NA      
 70 Gm10721.1       ENSMUSG00000096519.1  FALSE         1                  0      1 single           NA NA      
 71 Gm10722.1       ENSMUSG00000091028.1  FALSE         1                  0      1 single           NA NA      
 72 Gm10770.1       ENSMUSG00000074837.2  FALSE         1                  0      1 single           NA NA      
 73 Gm10772.1       ENSMUSG00000091347.2  FALSE         1                  0      1 single           NA NA      
 74 Gm10799.1       ENSMUSG00000075006.2  FALSE         0                  0      0 single           NA NA      
 75 Gm10800.1       ENSMUSG00000075014.1  FALSE         1                  1      1 single           NA NA      
 76 Gm10801.1       ENSMUSG00000075015.3  FALSE         1                  0      1 single           NA NA      
 77 Gm10840.1       ENSMUSG00000075480.1  FALSE         1                  0      1 single           NA NA      
 78 Gm10944.1       ENSMUSG00000078481.1  FALSE         0                  0      0 single           NA NA      
 79 Gm10945.1       ENSMUSG00000078488.1  FALSE         0                  0      0 single           NA NA      
 80 Gm10959.1       ENSMUSG00000078590.1  FALSE         0                  0      0 single           NA NA      
 81 Gm10961.1       ENSMUSG00000078604.1  FALSE         1                  0      1 single           NA NA      
 82 Gm10964.1       ENSMUSG00000078620.1  FALSE         0                  0      0 single           NA NA      
 83 Gm10972.1       ENSMUSG00000078655.1  FALSE         1                  0      1 single           NA NA      
 84 Gm10974.1       ENSMUSG00000078677.1  FALSE         1                 19      1 single           NA NA      
 85 Gm10985.1       ENSMUSG00000078742.1  FALSE         1                  3      1 single           NA NA      
 86 Gm10999.1       ENSMUSG00000078840.1  FALSE         1                  0      1 single           NA NA      
 87 Gm11011.1       ENSMUSG00000078912.2  FALSE         1                  4      1 single           NA NA      
 88 Gm11027.1       ENSMUSG00000078984.1  FALSE         1                 27      1 single           NA NA      
 89 Gm11032.1       ENSMUSG00000079010.1  FALSE         1                  8      1 single           NA NA      
 90 Gm11034.1       ENSMUSG00000079016.1  FALSE         1                  0      1 single           NA NA      
 91 Gm11037.1       ENSMUSG00000079039.1  FALSE         1                  0      1 single           NA NA      
 92 Gm11042.1       ENSMUSG00000079061.3  FALSE         1                  3      1 single           NA NA      
 93 Gm11060.1       ENSMUSG00000079175.1  FALSE         1                  0      1 single           NA NA      
 94 Gm11077.1       ENSMUSG00000079264.1  FALSE         1                  0      1 single           NA NA      
 95 Gm11084.1       ENSMUSG00000079286.1  FALSE         1                  0      1 single           NA NA      
 96 Gm11096.1       ENSMUSG00000079333.3  FALSE         0                  0      0 single           NA NA      
 97 Gm11099.1       ENSMUSG00000079353.2  FALSE         1                  0      1 single           NA NA      
 98 Gm11111.1       ENSMUSG00000079416.1  FALSE         0                  0      0 single           NA NA      
 99 Gm11114.1       ENSMUSG00000079433.1  FALSE         1                  0      1 single           NA NA      
100 Gm11115.1       ENSMUSG00000079438.1  FALSE         0                  0      0 single           NA NA      
101 Gm11146.1       ENSMUSG00000079546.1  FALSE         0                  0      0 single           NA NA      
102 Gm11168.3       ENSMUSG00000096385.7  FALSE         0.288              0      2 multi            NA NA      
103 Gm11168.4       ENSMUSG00000096385.7  FALSE         0.712              0      2 multi            NA NA      
104 Gm11172.1       ENSMUSG00000079740.1  FALSE         1                 13      1 single           NA NA      
105 Gm13212.1       ENSMUSG00000078502.10 TRUE          0                  0      1 single           NA NA      
106 Gm15448.1       ENSMUSG00000074419.11 FALSE         0.336              0      2 multi            NA NA      
107 Gm15448.2       ENSMUSG00000074419.11 TRUE          0                  0      2 multi            NA NA      
108 Gm16427.2       ENSMUSG00000096044.4  FALSE         0                  0      0 multi            NA NA      
109 Gm17067.1       ENSMUSG00000091594.2  FALSE         0.955              0      1 single           NA NA      
110 Gm17267.1       ENSMUSG00000094203.1  FALSE         0                  0      0 single           NA NA      
111 Gm17268.1       ENSMUSG00000092157.1  FALSE         0                  0      0 single           NA NA      
112 Gm17304.1       ENSMUSG00000091096.1  FALSE         1                  0      1 single           NA NA      
113 Gm17332.1       ENSMUSG00000091195.1  FALSE         1                  0      1 single           NA NA      
114 Gm17361.1       ENSMUSG00000095850.1  FALSE         0                  0      0 single           NA NA      
115 Gm17364.1       ENSMUSG00000090853.1  FALSE         0                  0      0 single           NA NA      
116 Gm17374.1       ENSMUSG00000078197.2  FALSE         1                 30      1 single           NA NA      
117 Gm17387.1       ENSMUSG00000091441.1  FALSE         1                  0      1 single           NA NA      
118 Gm17402.1       ENSMUSG00000090408.1  FALSE         1                 48      1 single           NA NA      
119 Gm17409.1       ENSMUSG00000091922.1  FALSE         0                  0      0 single           NA NA      
120 Gm17428.1       ENSMUSG00000090889.1  FALSE         1                  0      1 single           NA NA      
121 Gm17467.1       ENSMUSG00000095108.1  FALSE         0                  0      0 single           NA NA      
122 Gm17469.1       ENSMUSG00000094252.1  FALSE         0                  0      0 single           NA NA      
123 Gm17482.1       ENSMUSG00000092004.1  FALSE         0                  0      0 single           NA NA      
124 Gm17490.1       ENSMUSG00000091312.1  FALSE         0                  0      0 single           NA NA      
125 Gm17521.1       ENSMUSG00000094864.1  FALSE         0                  0      0 single           NA NA      
126 Gm17535.1       ENSMUSG00000096736.1  FALSE         1                  0      1 single           NA NA      
127 Gm17542.1       ENSMUSG00000091731.1  FALSE         1                  0      1 single           NA NA      
128 Gm17545.1       ENSMUSG00000091159.1  FALSE         1                  8      1 single           NA NA      
129 Gm17555.1       ENSMUSG00000090353.2  FALSE         1                 95      1 single           NA NA      
130 Gm17571.1       ENSMUSG00000090592.2  FALSE         1                 17      1 single           NA NA      
131 Gm17577.1       ENSMUSG00000095034.1  FALSE         0                  0      0 single           NA NA      
132 Gm17581.1       ENSMUSG00000092123.1  FALSE         1                  0      1 single           NA NA      
133 Gm17584.1       ENSMUSG00000094044.1  FALSE         0                  0      0 single           NA NA      
134 Gm17604.1       ENSMUSG00000079600.2  FALSE         1                 15      1 single           NA NA      
135 Gm17606.1       ENSMUSG00000091306.2  FALSE         1                  0      1 single           NA NA      
136 Gm17617.1       ENSMUSG00000091768.1  FALSE         0                  0      0 single           NA NA      
137 Gm17622.1       ENSMUSG00000091109.1  FALSE         0                  0      0 single           NA NA      
138 Gm17631.1       ENSMUSG00000092047.1  FALSE         1                  0      1 single           NA NA      
139 Gm17651.1       ENSMUSG00000090441.2  FALSE         0                  0      0 single           NA NA      
140 Gm17657.1       ENSMUSG00000091614.2  FALSE         0.0000756          0      1 single           NA NA      
141 Gm17662.1       ENSMUSG00000095386.1  FALSE         0                  0      0 single           NA NA      
142 Gm17693.1       ENSMUSG00000095965.1  FALSE         0                  0      0 single           NA NA      
143 Gm17720.1       ENSMUSG00000091041.1  FALSE         0                  0      0 single           NA NA      
144 Gm20837.1       ENSMUSG00000096178.7  FALSE         0                  0      0 multi            NA NA      
145 Gm20838.1       ENSMUSG00000095011.7  FALSE         0                  0      0 multi            NA NA      
146 Gm20855.1       ENSMUSG00000095793.7  FALSE         0                  0      0 multi            NA NA      
147 Gm20896.1       ENSMUSG00000096650.7  FALSE         0                  0      0 multi            NA NA      
148 Gm20916.1       ENSMUSG00000094746.7  FALSE         0                  0      0 multi            NA NA      
149 Gm20931.1       ENSMUSG00000094570.7  FALSE         0                  0      0 multi            NA NA      
150 Gm21028.1       ENSMUSG00000094462.1  FALSE         1                  0      1 single           NA NA      
151 Gm21060.1       ENSMUSG00000095993.1  FALSE         1                  0      1 single           NA NA      
152 Gm21094.1       ENSMUSG00000095263.7  FALSE         0                  0      0 multi            NA NA      
153 Gm21095.1       ENSMUSG00000095153.7  FALSE         0                  0      1 single           NA NA      
154 Gm21117.1       ENSMUSG00000096769.7  FALSE         0                  0      0 multi            NA NA      
155 Gm21170.1       ENSMUSG00000094170.1  FALSE         0                  0      0 single           NA NA      
156 Gm21256.1       ENSMUSG00000094782.7  FALSE         0                  0      0 multi            NA NA      
157 Gm21411.1       ENSMUSG00000045699.3  FALSE         1                 14      1 single           NA NA      
158 Gm21477.1       ENSMUSG00000094399.7  FALSE         0                  0      0 multi            NA NA      
159 Gm21616.1       ENSMUSG00000094147.1  FALSE         0                  0      0 single           NA NA      
160 Gm21679.1       ENSMUSG00000094869.1  FALSE         0                  0      0 single           NA NA      
161 Gm21731.1       ENSMUSG00000063846.8  FALSE         0                  0      0 multi            NA NA      
162 Gm21732.1       ENSMUSG00000096379.1  FALSE         0                  0      0 single           NA NA      
163 Gm21738.1       ENSMUSG00000095280.1  FALSE         1                  0      1 single           NA NA      
164 Gm21739.1       ENSMUSG00000094181.7  FALSE         0                  0      0 multi            NA NA      
165 Gm21750.1       ENSMUSG00000096463.1  FALSE         1                 71      1 single           NA NA      
166 Gm21760.1       ENSMUSG00000095578.7  FALSE         0                  0      0 multi            NA NA      
167 Gm21773.1       ENSMUSG00000094939.1  FALSE         0                  0      0 single           NA NA      
168 Gm21775.1       ENSMUSG00000095860.1  FALSE         0                  0      0 single           NA NA      
169 Gm21776.1       ENSMUSG00000094404.1  FALSE         0                  0      0 single           NA NA      
170 Gm21798.1       ENSMUSG00000094296.1  FALSE         1                 10      1 single           NA NA      
171 Gm21820.1       ENSMUSG00000095693.1  FALSE         0                  0      0 single           NA NA      
172 Gm21830.1       ENSMUSG00000096240.1  FALSE         1                  0      1 single           NA NA      
173 Gm21833.1       ENSMUSG00000094030.1  FALSE         1                 12      1 single           NA NA      
174 Gm21834.1       ENSMUSG00000095330.1  FALSE         1                  0      1 single           NA NA      
175 Gm21836.1       ENSMUSG00000096734.1  FALSE         1                  0      1 single           NA NA      
176 Gm21858.1       ENSMUSG00000095135.7  FALSE         1                  0      1 single           NA NA      
177 Gm21861.1       ENSMUSG00000096626.7  FALSE         0                  0      0 multi            NA NA      
178 Gm21865.1       ENSMUSG00000093895.7  FALSE         0                  0      0 multi            NA NA      
179 Gm21876.1       ENSMUSG00000095316.1  FALSE         0                  0      0 single           NA NA      
180 Gm21882.1       ENSMUSG00000094354.1  FALSE         0                  0      0 single           NA NA      
181 Gm21887.3       ENSMUSG00000095562.7  FALSE         1                  0      1 single           NA NA      
182 Gm21897.1       ENSMUSG00000094472.1  FALSE         1                 42      1 single           NA NA      
183 Gm21903.1       ENSMUSG00000094168.1  FALSE         0                  0      0 single           NA NA      
184 Gm21905.1       ENSMUSG00000095346.1  FALSE         0                  0      0 single           NA NA      
185 Gm21913.1       ENSMUSG00000094507.1  FALSE         0                  0      0 single           NA NA      
186 Gm21921.1       ENSMUSG00000094911.1  FALSE         0                  0      0 single           NA NA      
187 Gm21954.1       ENSMUSG00000094962.1  FALSE         0                  0      0 single           NA NA      
188 Gm21961.1       ENSMUSG00000079024.2  FALSE         1                  4      1 single           NA NA      
189 Gm2310.1        ENSMUSG00000095663.1  FALSE         0                  0      0 single           NA NA      
190 Gm26602.1       ENSMUSG00000097854.1  FALSE         1                  0      1 single           NA NA      
191 Gm26657.1       ENSMUSG00000096930.1  FALSE         0                  0      0 single           NA NA      
192 Gm26897.1       ENSMUSG00000096949.1  FALSE         0                  0      0 single           NA NA      
193 Gm28490.1       ENSMUSG00000094789.7  FALSE         0                  0      0 multi            NA NA      
194 Gm28891.1       ENSMUSG00000095141.7  FALSE         0                  0      0 multi            NA NA      
195 Gm2956.1        ENSMUSG00000096574.7  TRUE          0                  0      1 single           NA NA      
196 Gm3002.2        ENSMUSG00000096793.7  FALSE         0                  0      0 multi            NA NA      
197 Gm3005.1        ENSMUSG00000095195.7  TRUE          0                  0      1 single           NA NA      
198 Gm3012.1        ENSMUSG00000095368.7  TRUE          0                  0      0 multi            NA NA      
199 Gm3015.1        ENSMUSG00000095466.7  TRUE          0                  0      0 multi            NA NA      
200 Gm3020.1        ENSMUSG00000079402.9  TRUE          0                  0      0 multi            NA NA      
201 Gm3147.1        ENSMUSG00000095503.4  FALSE         0                  0      0 multi            NA NA      
202 Gm3252.1        ENSMUSG00000094628.7  TRUE          0                  0      1 single           NA NA      
203 Gm3259.1        ENSMUSG00000079424.8  FALSE         0                  0      0 multi            NA NA      
204 Gm3298.2        ENSMUSG00000079383.9  FALSE         0                  0      0 multi            NA NA      
205 Gm3371.1        ENSMUSG00000090716.2  FALSE         0                  0      0 multi            NA NA      
206 Gm3476.4        ENSMUSG00000079371.9  FALSE         0                  0      0 multi            NA NA      
207 Gm3500.1        ENSMUSG00000096003.7  TRUE          0                  0      1 single           NA NA      
208 Gm3543.1        ENSMUSG00000093945.1  FALSE         0                  0      0 multi            NA NA      
209 Gm3633.1        ENSMUSG00000095113.1  FALSE         0                  0      0 multi            NA NA      
210 Gm3752.1        ENSMUSG00000091617.8  TRUE          0                  0      1 single           NA NA      
211 Gm379.1         ENSMUSG00000093916.1  FALSE         1                  0      1 single           NA NA      
212 Gm4553.1        ENSMUSG00000090471.2  FALSE         0                  0      1 single           NA NA      
213 Gm4779.1        ENSMUSG00000045010.14 TRUE          0                  0      1 single           NA NA      
214 Gm49403.1       ENSMUSG00000116166.1  FALSE         0                  0      0 single           NA NA      
215 Gm498.1         ENSMUSG00000031085.16 TRUE          0                  0      0 multi            NA NA      
216 Gm5152.1        ENSMUSG00000069355.12 FALSE         1                  0      1 single           NA NA      
217 Gm5795.1        ENSMUSG00000079409.8  TRUE          0                  0      1 single           NA NA      
218 Gm5798.1        ENSMUSG00000094925.7  FALSE         0                  0      0 multi            NA NA      
219 Gm5849.1        ENSMUSG00000096621.1  FALSE         0                  0      0 single           NA NA      
220 Gm5930.1        ENSMUSG00000079267.9  FALSE         0                  0      0 multi            NA NA      
221 Gm5965.1        ENSMUSG00000009047.3  FALSE         1                  0      1 single           NA NA      
222 Gm6020.1        ENSMUSG00000069475.1  FALSE         1                  0      1 single           NA NA      
223 Gm6401.1        ENSMUSG00000095044.7  TRUE          0                  0      0 multi            NA NA      
224 Gm6502.1        ENSMUSG00000095718.2  FALSE         0                  0      0 multi            NA NA      
225 Gm6509.1        ENSMUSG00000094195.2  FALSE         0                  0      0 multi            NA NA      
226 Gm6526.1        ENSMUSG00000091698.8  FALSE         0                  0      0 multi            NA NA      
227 Gm7173.2        ENSMUSG00000073077.6  TRUE          0                  0      1 single           NA NA      
228 Gm7929.1        ENSMUSG00000091740.3  TRUE          0                  0      0 multi            NA NA      
229 Gm7995.1        ENSMUSG00000094157.7  FALSE         0                  0      0 multi            NA NA      
230 Gm8220.1        ENSMUSG00000091725.8  FALSE         0                  0      1 single           NA NA      
231 Gm8220.2        ENSMUSG00000091725.8  TRUE          0                  0      1 single           NA NA      
232 Gm8257.1        ENSMUSG00000079265.10 FALSE         0                  0      0 multi            NA NA      
233 Gm8279.1        ENSMUSG00000079378.8  TRUE          0                  0      0 multi            NA NA      
234 Gm8281.1        ENSMUSG00000095681.7  TRUE          0                  0      1 single           NA NA      
235 Gm8356.1        ENSMUSG00000090627.8  TRUE          0                  0      1 single           NA NA      
236 Gm9507.1        ENSMUSG00000094913.3  FALSE         0                  0      0 multi            NA NA      
237 Gm9602.1        ENSMUSG00000090539.8  TRUE          0                  0      0 multi            NA NA      
238 Gm9611.1        ENSMUSG00000095371.1  FALSE         0                  0      0 multi            NA NA      
239 Gm9780.1        ENSMUSG00000094800.8  TRUE          0                  0      1 single           NA NA      
240 Hint3.1         ENSMUSG00000019791.12 FALSE         0.284             52      4 multi            NA NA      
241 Ifi206.1        ENSMUSG00000037849.8  FALSE         0.0168             0      1 single           NA NA      
242 Ighv6-4.1       ENSMUSG00000094174.2  FALSE         1                  0      1 single           NA NA      
243 Ighv6-5.1       ENSMUSG00000096407.2  FALSE         1                  0      1 single           NA NA      
244 Igkv4-54.1      ENSMUSG00000094319.2  FALSE         1                  0      1 single           NA NA      
245 Igkv4-62.1      ENSMUSG00000094262.2  FALSE         1                  0      1 single           NA NA      
246 Igkv4-71.1      ENSMUSG00000073028.4  FALSE         1                  1      1 single           NA NA      
247 Immp2l.1        ENSMUSG00000056899.10 FALSE         0.0304             1      3 multi            NA NA      
248 Kcnma1.9        ENSMUSG00000063142.15 FALSE         0                  0      0 multi            NA NA      
249 Krtap14.2       ENSMUSG00000074928.4  FALSE         0                  0      0 multi            NA NA      
250 Krtap15.1       ENSMUSG00000022931.7  FALSE         0.111              0      2 multi            NA NA      
251 Lrp1b.3         ENSMUSG00000049252.17 FALSE         0.0257             0      2 multi            NA NA      
252 Mecom.1         ENSMUSG00000027684.16 TRUE          0                  0      2 multi            NA NA      
253 mt-Co3.1        ENSMUSG00000064358.1  FALSE         1                118      1 single           NA NA      
254 mt-Cytb.1       ENSMUSG00000064370.1  FALSE         1                117      1 single           NA NA      
255 mt-Nd4.1        ENSMUSG00000064363.1  FALSE         1                118      1 single           NA NA      
256 Muc2.1          ENSMUSG00000025515.15 FALSE         0                  0      1 single           NA NA      
257 Muc2.2          ENSMUSG00000025515.15 FALSE         0                  0      1 single           NA NA      
258 Nkain2.2        ENSMUSG00000069670.8  FALSE         0.0270             0      1 single           NA NA      
259 Olfr1025-ps1.1  ENSMUSG00000058884.6  FALSE         0                  0      0 multi            NA NA      
260 Olfr1055.1      ENSMUSG00000075189.5  FALSE         0                  0      1 single           NA NA      
261 Olfr1177-ps.1   ENSMUSG00000075128.7  FALSE         0                  0      1 single           NA NA      
262 Olfr1293-ps.1   ENSMUSG00000108908.4  FALSE         0                  0      0 multi            NA NA      
263 Olfr1410.1      ENSMUSG00000063583.6  FALSE         0                  0      1 single           NA NA      
264 Olfr1432.1      ENSMUSG00000109022.2  FALSE         0                  0      1 single           NA NA      
265 Olfr396-ps1.1   ENSMUSG00000108605.2  FALSE         0                  0      0 single           NA NA      
266 Olfr548-ps1.1   ENSMUSG00000073978.8  FALSE         0                  0      0 multi            NA NA      
267 Olfr576.2       ENSMUSG00000073962.9  FALSE         0                  0      0 multi            NA NA      
268 Olfr587-ps1.1   ENSMUSG00000080891.4  FALSE         0                  0      0 single           NA NA      
269 Olfr588-ps1.1   ENSMUSG00000084262.5  FALSE         0                  0      0 multi            NA NA      
270 Olfr607.1       ENSMUSG00000081945.4  FALSE         0                  0      1 single           NA NA      
271 Olfr682-ps1.1   ENSMUSG00000059768.7  FALSE         0                  0      0 single           NA NA      
272 Olfr718-ps1.1   ENSMUSG00000090981.6  FALSE         0                  0      1 single           NA NA      
273 Olfr753-ps1.1   ENSMUSG00000090556.5  FALSE         1                  0      1 single           NA NA      
274 Olfr779.1       ENSMUSG00000044537.8  FALSE         0                  0      0 single           NA NA      
275 Pkhd1l1.1       ENSMUSG00000038725.13 TRUE          0                  0      1 single           NA NA      
276 Ppp2r3d.6       ENSMUSG00000093803.3  FALSE         0.194              5      3 multi            NA NA      
277 Prkn.1          ENSMUSG00000023826.16 TRUE          0                  0      1 single           NA NA      
278 Prkn.3          ENSMUSG00000023826.16 FALSE         0.0221             0      1 single           NA NA      
279 Prkn.4          ENSMUSG00000023826.16 TRUE          0                  0      1 single           NA NA      
280 Prss47.1        ENSMUSG00000090658.7  FALSE         0                  0      1 single           NA NA      
281 Psd3.1          ENSMUSG00000030465.19 TRUE          0                  0      1 single           NA NA      
282 Ralyl.1         ENSMUSG00000039717.16 TRUE          0                  0      1 single           NA NA      
283 Rgs6.2          ENSMUSG00000021219.16 FALSE         0                  0      4 multi            NA NA      
284 Rims1.1         ENSMUSG00000041670.16 TRUE          0                  0      2 multi            NA NA      
285 Rsph10b.1       ENSMUSG00000075569.10 TRUE          0                  0      1 single           NA NA      
286 Samd15.1        ENSMUSG00000090812.8  FALSE         0.0131             0      1 single           NA NA      
287 Skint5.1        ENSMUSG00000078598.11 TRUE          0                  0      1 single           NA NA      
288 Slc26a6.1       ENSMUSG00000023259.16 TRUE          0                  0      1 single           NA NA      
289 Slc6a16.1       ENSMUSG00000094152.5  TRUE          0                  0      1 single           NA NA      
290 Speer4c.1       ENSMUSG00000073208.12 FALSE         0.718              0      2 multi            NA NA      
291 Spink10.2       ENSMUSG00000044176.12 FALSE         0.00195            0      2 multi            NA NA      
292 Srsx.1          ENSMUSG00000091821.1  FALSE         0                  0      0 single           NA NA      
293 Ssxa1.1         ENSMUSG00000062814.9  FALSE         0                  0      0 single           NA NA      
294 Syne2.1         ENSMUSG00000063450.14 FALSE         0.00546            0      1 single           NA NA      
295 Tmem247.2       ENSMUSG00000037689.6  FALSE         1                  0      1 single           NA NA      
296 Ttn.2           ENSMUSG00000051747.14 TRUE          0                  0      2 multi            NA NA      
297 Vmn2r55.1       ENSMUSG00000091045.9  TRUE          0                  0      0 multi            NA NA      
298 Vwa5a.1         ENSMUSG00000023186.14 FALSE         0.0113             0      1 single           NA NA      
299 Wdpcp.1         ENSMUSG00000020319.9  FALSE         0.0983            12      2 multi            NA NA      
300 Wdr41.1         ENSMUSG00000042015.17 TRUE          0                  0      2 multi            NA NA      
301 Wdr49.1         ENSMUSG00000104301.3  FALSE         0.4                0      2 multi            NA NA      
302 Zfp626.1        ENSMUSG00000030604.9  FALSE         0.153             11      2 multi            NA NA      
303 Zfp853.1        ENSMUSG00000093910.2  FALSE         0.00429            0      1 single           NA NA      
304 Zfp950.5        ENSMUSG00000074733.14 TRUE          0                  0      2 multi            NA NA      
305 Zfp986.1        ENSMUSG00000078500.3  FALSE         0                  0      0 single           NA NA      
306 Zfp988.1        ENSMUSG00000078498.5  FALSE         0                  0      1 single           NA NA      
307 Zfp993.1        ENSMUSG00000063245.11 FALSE         1                 30      1 single           NA NA

Possible Cause

Inspect the some transcripts, seems to show missing three_prime_utr and stop_codon entries in the GTF. May need to flag these transcripts as improper.
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@mfansler