diff --git a/docs/_modules/index.html b/docs/_modules/index.html index c8f1abe..3b90bf1 100644 --- a/docs/_modules/index.html +++ b/docs/_modules/index.html @@ -3,7 +3,7 @@ - Overview: module code — turbomoleio 1.3.1 documentation + Overview: module code — turbomoleio 1.4.0 documentation @@ -14,7 +14,7 @@ - + @@ -34,7 +34,7 @@ turbomoleio
- 1.3.1 + 1.4.0
diff --git a/docs/_modules/turbomoleio/core/base.html b/docs/_modules/turbomoleio/core/base.html index cb19058..e551af9 100644 --- a/docs/_modules/turbomoleio/core/base.html +++ b/docs/_modules/turbomoleio/core/base.html @@ -3,7 +3,7 @@ - turbomoleio.core.base — turbomoleio 1.3.1 documentation + turbomoleio.core.base — turbomoleio 1.4.0 documentation @@ -14,7 +14,7 @@ - + @@ -34,7 +34,7 @@ turbomoleio
- 1.3.1 + 1.4.0
diff --git a/docs/_modules/turbomoleio/core/control.html b/docs/_modules/turbomoleio/core/control.html index fc9f790..0c4f005 100644 --- a/docs/_modules/turbomoleio/core/control.html +++ b/docs/_modules/turbomoleio/core/control.html @@ -3,7 +3,7 @@ - turbomoleio.core.control — turbomoleio 1.3.1 documentation + turbomoleio.core.control — turbomoleio 1.4.0 documentation @@ -14,7 +14,7 @@ - + @@ -34,7 +34,7 @@ turbomoleio
- 1.3.1 + 1.4.0
diff --git a/docs/_modules/turbomoleio/core/datagroups.html b/docs/_modules/turbomoleio/core/datagroups.html index 8c0ceaf..d18f35b 100644 --- a/docs/_modules/turbomoleio/core/datagroups.html +++ b/docs/_modules/turbomoleio/core/datagroups.html @@ -3,7 +3,7 @@ - turbomoleio.core.datagroups — turbomoleio 1.3.1 documentation + turbomoleio.core.datagroups — turbomoleio 1.4.0 documentation @@ -14,7 +14,7 @@ - + @@ -34,7 +34,7 @@ turbomoleio
- 1.3.1 + 1.4.0
diff --git a/docs/_modules/turbomoleio/core/molecule.html b/docs/_modules/turbomoleio/core/molecule.html index 695bac2..5b9fa05 100644 --- a/docs/_modules/turbomoleio/core/molecule.html +++ b/docs/_modules/turbomoleio/core/molecule.html @@ -3,7 +3,7 @@ - turbomoleio.core.molecule — turbomoleio 1.3.1 documentation + turbomoleio.core.molecule — turbomoleio 1.4.0 documentation @@ -14,7 +14,7 @@ - + @@ -34,7 +34,7 @@ turbomoleio
- 1.3.1 + 1.4.0
diff --git a/docs/_modules/turbomoleio/core/periodic.html b/docs/_modules/turbomoleio/core/periodic.html index c8cdadc..54cff88 100644 --- a/docs/_modules/turbomoleio/core/periodic.html +++ b/docs/_modules/turbomoleio/core/periodic.html @@ -3,7 +3,7 @@ - turbomoleio.core.periodic — turbomoleio 1.3.1 documentation + turbomoleio.core.periodic — turbomoleio 1.4.0 documentation @@ -14,7 +14,7 @@ - + @@ -34,7 +34,7 @@ turbomoleio
- 1.3.1 + 1.4.0
diff --git a/docs/_modules/turbomoleio/core/tests/test_control.html b/docs/_modules/turbomoleio/core/tests/test_control.html index c245443..4378487 100644 --- a/docs/_modules/turbomoleio/core/tests/test_control.html +++ b/docs/_modules/turbomoleio/core/tests/test_control.html @@ -3,7 +3,7 @@ - turbomoleio.core.tests.test_control — turbomoleio 1.3.1 documentation + turbomoleio.core.tests.test_control — turbomoleio 1.4.0 documentation @@ -14,7 +14,7 @@ - + @@ -34,7 +34,7 @@ turbomoleio
- 1.3.1 + 1.4.0
diff --git a/docs/_modules/turbomoleio/core/tests/test_datagroups.html b/docs/_modules/turbomoleio/core/tests/test_datagroups.html index 4a2af27..9a5b152 100644 --- a/docs/_modules/turbomoleio/core/tests/test_datagroups.html +++ b/docs/_modules/turbomoleio/core/tests/test_datagroups.html @@ -3,7 +3,7 @@ - turbomoleio.core.tests.test_datagroups — turbomoleio 1.3.1 documentation + turbomoleio.core.tests.test_datagroups — turbomoleio 1.4.0 documentation @@ -14,7 +14,7 @@ - + @@ -34,7 +34,7 @@ turbomoleio
- 1.3.1 + 1.4.0
diff --git a/docs/_modules/turbomoleio/core/tests/test_molecule.html b/docs/_modules/turbomoleio/core/tests/test_molecule.html index ca1fbb8..472ddea 100644 --- a/docs/_modules/turbomoleio/core/tests/test_molecule.html +++ b/docs/_modules/turbomoleio/core/tests/test_molecule.html @@ -3,7 +3,7 @@ - turbomoleio.core.tests.test_molecule — turbomoleio 1.3.1 documentation + turbomoleio.core.tests.test_molecule — turbomoleio 1.4.0 documentation @@ -14,7 +14,7 @@ - + @@ -34,7 +34,7 @@ turbomoleio
- 1.3.1 + 1.4.0
diff --git a/docs/_modules/turbomoleio/core/tests/test_periodic.html b/docs/_modules/turbomoleio/core/tests/test_periodic.html index 0c75a36..2f8f00f 100644 --- a/docs/_modules/turbomoleio/core/tests/test_periodic.html +++ b/docs/_modules/turbomoleio/core/tests/test_periodic.html @@ -3,7 +3,7 @@ - turbomoleio.core.tests.test_periodic — turbomoleio 1.3.1 documentation + turbomoleio.core.tests.test_periodic — turbomoleio 1.4.0 documentation @@ -14,7 +14,7 @@ - + @@ -34,7 +34,7 @@ turbomoleio
- 1.3.1 + 1.4.0
diff --git a/docs/_modules/turbomoleio/core/tests/test_utils.html b/docs/_modules/turbomoleio/core/tests/test_utils.html index 90f0745..2bc786e 100644 --- a/docs/_modules/turbomoleio/core/tests/test_utils.html +++ b/docs/_modules/turbomoleio/core/tests/test_utils.html @@ -3,7 +3,7 @@ - turbomoleio.core.tests.test_utils — turbomoleio 1.3.1 documentation + turbomoleio.core.tests.test_utils — turbomoleio 1.4.0 documentation @@ -14,7 +14,7 @@ - + @@ -34,7 +34,7 @@ turbomoleio
- 1.3.1 + 1.4.0
diff --git a/docs/_modules/turbomoleio/core/utils.html b/docs/_modules/turbomoleio/core/utils.html index cce33c2..cb61e72 100644 --- a/docs/_modules/turbomoleio/core/utils.html +++ b/docs/_modules/turbomoleio/core/utils.html @@ -3,7 +3,7 @@ - turbomoleio.core.utils — turbomoleio 1.3.1 documentation + turbomoleio.core.utils — turbomoleio 1.4.0 documentation @@ -14,7 +14,7 @@ - + @@ -34,7 +34,7 @@ turbomoleio
- 1.3.1 + 1.4.0
diff --git a/docs/_modules/turbomoleio/input/define.html b/docs/_modules/turbomoleio/input/define.html index 9dc0c1b..cb7fb03 100644 --- a/docs/_modules/turbomoleio/input/define.html +++ b/docs/_modules/turbomoleio/input/define.html @@ -3,7 +3,7 @@ - turbomoleio.input.define — turbomoleio 1.3.1 documentation + turbomoleio.input.define — turbomoleio 1.4.0 documentation @@ -14,7 +14,7 @@ - + @@ -34,7 +34,7 @@ turbomoleio
- 1.3.1 + 1.4.0
diff --git a/docs/_modules/turbomoleio/input/tests/test_define.html b/docs/_modules/turbomoleio/input/tests/test_define.html index d9a4148..ff511b3 100644 --- a/docs/_modules/turbomoleio/input/tests/test_define.html +++ b/docs/_modules/turbomoleio/input/tests/test_define.html @@ -3,7 +3,7 @@ - turbomoleio.input.tests.test_define — turbomoleio 1.3.1 documentation + turbomoleio.input.tests.test_define — turbomoleio 1.4.0 documentation @@ -14,7 +14,7 @@ - + @@ -34,7 +34,7 @@ turbomoleio
- 1.3.1 + 1.4.0
diff --git a/docs/_modules/turbomoleio/input/tests/test_utils.html b/docs/_modules/turbomoleio/input/tests/test_utils.html index 8afe626..91f7e29 100644 --- a/docs/_modules/turbomoleio/input/tests/test_utils.html +++ b/docs/_modules/turbomoleio/input/tests/test_utils.html @@ -3,7 +3,7 @@ - turbomoleio.input.tests.test_utils — turbomoleio 1.3.1 documentation + turbomoleio.input.tests.test_utils — turbomoleio 1.4.0 documentation @@ -14,7 +14,7 @@ - + @@ -34,7 +34,7 @@ turbomoleio
- 1.3.1 + 1.4.0
diff --git a/docs/_modules/turbomoleio/input/utils.html b/docs/_modules/turbomoleio/input/utils.html index 9f66448..7ef02c6 100644 --- a/docs/_modules/turbomoleio/input/utils.html +++ b/docs/_modules/turbomoleio/input/utils.html @@ -3,7 +3,7 @@ - turbomoleio.input.utils — turbomoleio 1.3.1 documentation + turbomoleio.input.utils — turbomoleio 1.4.0 documentation @@ -14,7 +14,7 @@ - + @@ -34,7 +34,7 @@ turbomoleio
- 1.3.1 + 1.4.0
diff --git a/docs/_modules/turbomoleio/output/data.html b/docs/_modules/turbomoleio/output/data.html index 66ea89c..ecc308d 100644 --- a/docs/_modules/turbomoleio/output/data.html +++ b/docs/_modules/turbomoleio/output/data.html @@ -3,7 +3,7 @@ - turbomoleio.output.data — turbomoleio 1.3.1 documentation + turbomoleio.output.data — turbomoleio 1.4.0 documentation @@ -14,7 +14,7 @@ - + @@ -34,7 +34,7 @@ turbomoleio
- 1.3.1 + 1.4.0
diff --git a/docs/_modules/turbomoleio/output/files.html b/docs/_modules/turbomoleio/output/files.html index e850b7f..a0badf9 100644 --- a/docs/_modules/turbomoleio/output/files.html +++ b/docs/_modules/turbomoleio/output/files.html @@ -3,7 +3,7 @@ - turbomoleio.output.files — turbomoleio 1.3.1 documentation + turbomoleio.output.files — turbomoleio 1.4.0 documentation @@ -14,7 +14,7 @@ - + @@ -34,7 +34,7 @@ turbomoleio
- 1.3.1 + 1.4.0
diff --git a/docs/_modules/turbomoleio/output/parser.html b/docs/_modules/turbomoleio/output/parser.html index 148555a..199b1b8 100644 --- a/docs/_modules/turbomoleio/output/parser.html +++ b/docs/_modules/turbomoleio/output/parser.html @@ -3,7 +3,7 @@ - turbomoleio.output.parser — turbomoleio 1.3.1 documentation + turbomoleio.output.parser — turbomoleio 1.4.0 documentation @@ -14,7 +14,7 @@ - + @@ -34,7 +34,7 @@ turbomoleio
- 1.3.1 + 1.4.0
@@ -504,12 +504,15 @@

Source code for turbomoleio.output.parser

         # In this case turbomole version and build will be set to None.
         # For example it may be:
         # escf (node001) : TURBOMOLE rev. compiled 1 Jul 2018 at 20:38:15
-        r_version = r"V([\d\.]+\d)\s+.*"
+        #
+        # Note: TURBOMOLE 7.6 uses the notation 7-6. Catch it and convert to 7.6
+        r_version = r"V([\d\.-]+\d)\s+.*"
         r_build = r"V[\d\.]+\d\s+\((.*)\)"
         match_version = re.search(r_version, match.group(3).strip())
         match_build = re.search(r_build, match.group(3).strip())
         if match_version:
             tm_version = match_version.group(1).strip()
+            tm_version = tm_version.replace("-", ".")
         else:
             tm_version = None
         if match_build:
diff --git a/docs/_modules/turbomoleio/output/states.html b/docs/_modules/turbomoleio/output/states.html
index bec479d..ef03168 100644
--- a/docs/_modules/turbomoleio/output/states.html
+++ b/docs/_modules/turbomoleio/output/states.html
@@ -3,7 +3,7 @@
 
   
   
-  turbomoleio.output.states — turbomoleio 1.3.1 documentation
+  turbomoleio.output.states — turbomoleio 1.4.0 documentation
       
       
 
@@ -14,7 +14,7 @@
   
         
         
-        
+        
         
         
     
@@ -34,7 +34,7 @@
             turbomoleio
           
               
- 1.3.1 + 1.4.0
diff --git a/docs/_modules/turbomoleio/output/tests/test_data.html b/docs/_modules/turbomoleio/output/tests/test_data.html index 3e62591..c13fc90 100644 --- a/docs/_modules/turbomoleio/output/tests/test_data.html +++ b/docs/_modules/turbomoleio/output/tests/test_data.html @@ -3,7 +3,7 @@ - turbomoleio.output.tests.test_data — turbomoleio 1.3.1 documentation + turbomoleio.output.tests.test_data — turbomoleio 1.4.0 documentation @@ -14,7 +14,7 @@ - + @@ -34,7 +34,7 @@ turbomoleio
- 1.3.1 + 1.4.0
diff --git a/docs/_modules/turbomoleio/output/tests/test_files.html b/docs/_modules/turbomoleio/output/tests/test_files.html index 89e3f96..7a0c577 100644 --- a/docs/_modules/turbomoleio/output/tests/test_files.html +++ b/docs/_modules/turbomoleio/output/tests/test_files.html @@ -3,7 +3,7 @@ - turbomoleio.output.tests.test_files — turbomoleio 1.3.1 documentation + turbomoleio.output.tests.test_files — turbomoleio 1.4.0 documentation @@ -14,7 +14,7 @@ - + @@ -34,7 +34,7 @@ turbomoleio
- 1.3.1 + 1.4.0
diff --git a/docs/_modules/turbomoleio/output/tests/test_parser.html b/docs/_modules/turbomoleio/output/tests/test_parser.html index ec20a79..854f8ad 100644 --- a/docs/_modules/turbomoleio/output/tests/test_parser.html +++ b/docs/_modules/turbomoleio/output/tests/test_parser.html @@ -3,7 +3,7 @@ - turbomoleio.output.tests.test_parser — turbomoleio 1.3.1 documentation + turbomoleio.output.tests.test_parser — turbomoleio 1.4.0 documentation @@ -14,7 +14,7 @@ - + @@ -34,7 +34,7 @@ turbomoleio
- 1.3.1 + 1.4.0
diff --git a/docs/_modules/turbomoleio/output/tests/test_states.html b/docs/_modules/turbomoleio/output/tests/test_states.html index 8936173..f7bc829 100644 --- a/docs/_modules/turbomoleio/output/tests/test_states.html +++ b/docs/_modules/turbomoleio/output/tests/test_states.html @@ -3,7 +3,7 @@ - turbomoleio.output.tests.test_states — turbomoleio 1.3.1 documentation + turbomoleio.output.tests.test_states — turbomoleio 1.4.0 documentation @@ -14,7 +14,7 @@ - + @@ -34,7 +34,7 @@ turbomoleio
- 1.3.1 + 1.4.0
diff --git a/docs/_modules/turbomoleio/testfiles/utils.html b/docs/_modules/turbomoleio/testfiles/utils.html index 3c2338f..6c16b71 100644 --- a/docs/_modules/turbomoleio/testfiles/utils.html +++ b/docs/_modules/turbomoleio/testfiles/utils.html @@ -3,7 +3,7 @@ - turbomoleio.testfiles.utils — turbomoleio 1.3.1 documentation + turbomoleio.testfiles.utils — turbomoleio 1.4.0 documentation @@ -14,7 +14,7 @@ - + @@ -34,7 +34,7 @@ turbomoleio
- 1.3.1 + 1.4.0
@@ -142,7 +142,7 @@

Source code for turbomoleio.testfiles.utils

 from turbomoleio.output.states import EigerRunner, States
 
 TESTDIR = os.path.split(__file__)[0]
-TM_VERSIONS = ["TM_v7.3", "TM_v7.3.1", "TM_v7.4.1", "TM_v7.5.1"]
+TM_VERSIONS = ["TM_v7.3", "TM_v7.3.1", "TM_v7.4.1", "TM_v7.5.1", "TM_v7.6"]
 TESTS_CONFIGS_TM_VERSIONS = {
     tmv: loadfn(os.path.join(TESTDIR, "outputs", tmv, "tests_config.yaml"))
     for tmv in TM_VERSIONS
diff --git a/docs/_sources/index.rst.txt b/docs/_sources/index.rst.txt
index 85a6ef5..714e8d9 100644
--- a/docs/_sources/index.rst.txt
+++ b/docs/_sources/index.rst.txt
@@ -27,14 +27,15 @@ turbomoleio
 turbomoleio is a python library containing a set of tools for the generation of inputs and parsing of
 outputs for `TURBOMOLE `_, based on the open-source `pymatgen `_
 library. turbomoleio is compatible with python version 3.8 and higher. The current version of turbomoleio is
-compatible with TURBOMOLE version 7.5. Care is taken to provide backward compatibility for parsing of output
+compatible with TURBOMOLE version 7.6. Care is taken to provide backward compatibility for parsing of output
 files generated with versions of TURBOMOLE down to 7.3. Full compatibility (i.e. input generation using define)
-is only tested for TURBOMOLE version 7.5. The following table summarizes the compatibility (full, including input
+is only tested for TURBOMOLE version 7.6. The following table summarizes the compatibility (full, including input
 generation using define) between TURBOMOLE and turbomoleio versions:
 
 ======================= =======================
 TURBOMOLE version(s)    turbomoleio version(s)
 ======================= =======================
+7.6 series              1.4.x series
 7.5 series              1.3.x series
 7.4 series              1.2.x series
 7.3 series              1.0.x and 1.1.x series
diff --git a/docs/_static/documentation_options.js b/docs/_static/documentation_options.js
index db0704b..849f66f 100644
--- a/docs/_static/documentation_options.js
+++ b/docs/_static/documentation_options.js
@@ -1,6 +1,6 @@
 var DOCUMENTATION_OPTIONS = {
     URL_ROOT: document.getElementById("documentation_options").getAttribute('data-url_root'),
-    VERSION: '1.3.1',
+    VERSION: '1.4.0',
     LANGUAGE: 'en',
     COLLAPSE_INDEX: false,
     BUILDER: 'html',
diff --git a/docs/api/modules.html b/docs/api/modules.html
index b3b52dc..70c6fbd 100644
--- a/docs/api/modules.html
+++ b/docs/api/modules.html
@@ -4,7 +4,7 @@
   
 
   
-  turbomoleio — turbomoleio 1.3.1 documentation
+  turbomoleio — turbomoleio 1.4.0 documentation
       
       
 
@@ -15,7 +15,7 @@
   
         
         
-        
+        
         
         
     
@@ -37,7 +37,7 @@
             turbomoleio
           
               
- 1.3.1 + 1.4.0
diff --git a/docs/api/turbomoleio.core.html b/docs/api/turbomoleio.core.html index 69c565e..bdd5d7d 100644 --- a/docs/api/turbomoleio.core.html +++ b/docs/api/turbomoleio.core.html @@ -4,7 +4,7 @@ - turbomoleio.core package — turbomoleio 1.3.1 documentation + turbomoleio.core package — turbomoleio 1.4.0 documentation @@ -15,7 +15,7 @@ - + @@ -37,7 +37,7 @@ turbomoleio
- 1.3.1 + 1.4.0
diff --git a/docs/api/turbomoleio.core.tests.html b/docs/api/turbomoleio.core.tests.html index b0d64c2..53818e9 100644 --- a/docs/api/turbomoleio.core.tests.html +++ b/docs/api/turbomoleio.core.tests.html @@ -4,7 +4,7 @@ - turbomoleio.core.tests package — turbomoleio 1.3.1 documentation + turbomoleio.core.tests package — turbomoleio 1.4.0 documentation @@ -15,7 +15,7 @@ - + @@ -37,7 +37,7 @@ turbomoleio
- 1.3.1 + 1.4.0
diff --git a/docs/api/turbomoleio.html b/docs/api/turbomoleio.html index f0071f0..e393193 100644 --- a/docs/api/turbomoleio.html +++ b/docs/api/turbomoleio.html @@ -4,7 +4,7 @@ - turbomoleio package — turbomoleio 1.3.1 documentation + turbomoleio package — turbomoleio 1.4.0 documentation @@ -15,7 +15,7 @@ - + @@ -37,7 +37,7 @@ turbomoleio
- 1.3.1 + 1.4.0
diff --git a/docs/api/turbomoleio.input.html b/docs/api/turbomoleio.input.html index 0d28cbe..7c5a743 100644 --- a/docs/api/turbomoleio.input.html +++ b/docs/api/turbomoleio.input.html @@ -4,7 +4,7 @@ - turbomoleio.input package — turbomoleio 1.3.1 documentation + turbomoleio.input package — turbomoleio 1.4.0 documentation @@ -15,7 +15,7 @@ - + @@ -37,7 +37,7 @@ turbomoleio
- 1.3.1 + 1.4.0
diff --git a/docs/api/turbomoleio.input.templates.html b/docs/api/turbomoleio.input.templates.html index 4a50324..2ecbacb 100644 --- a/docs/api/turbomoleio.input.templates.html +++ b/docs/api/turbomoleio.input.templates.html @@ -4,7 +4,7 @@ - turbomoleio.input.templates package — turbomoleio 1.3.1 documentation + turbomoleio.input.templates package — turbomoleio 1.4.0 documentation @@ -15,7 +15,7 @@ - + @@ -37,7 +37,7 @@ turbomoleio
- 1.3.1 + 1.4.0
diff --git a/docs/api/turbomoleio.input.tests.html b/docs/api/turbomoleio.input.tests.html index d2758f6..e40db7b 100644 --- a/docs/api/turbomoleio.input.tests.html +++ b/docs/api/turbomoleio.input.tests.html @@ -4,7 +4,7 @@ - turbomoleio.input.tests package — turbomoleio 1.3.1 documentation + turbomoleio.input.tests package — turbomoleio 1.4.0 documentation @@ -15,7 +15,7 @@ - + @@ -37,7 +37,7 @@ turbomoleio
- 1.3.1 + 1.4.0
diff --git a/docs/api/turbomoleio.output.html b/docs/api/turbomoleio.output.html index d2e110b..a34981b 100644 --- a/docs/api/turbomoleio.output.html +++ b/docs/api/turbomoleio.output.html @@ -4,7 +4,7 @@ - turbomoleio.output package — turbomoleio 1.3.1 documentation + turbomoleio.output package — turbomoleio 1.4.0 documentation @@ -15,7 +15,7 @@ - + @@ -37,7 +37,7 @@ turbomoleio
- 1.3.1 + 1.4.0
diff --git a/docs/api/turbomoleio.output.tests.html b/docs/api/turbomoleio.output.tests.html index 22b1520..5fc4520 100644 --- a/docs/api/turbomoleio.output.tests.html +++ b/docs/api/turbomoleio.output.tests.html @@ -4,7 +4,7 @@ - turbomoleio.output.tests package — turbomoleio 1.3.1 documentation + turbomoleio.output.tests package — turbomoleio 1.4.0 documentation @@ -15,7 +15,7 @@ - + @@ -37,7 +37,7 @@ turbomoleio
- 1.3.1 + 1.4.0
diff --git a/docs/api/turbomoleio.testfiles.html b/docs/api/turbomoleio.testfiles.html index 793db22..efe0993 100644 --- a/docs/api/turbomoleio.testfiles.html +++ b/docs/api/turbomoleio.testfiles.html @@ -4,7 +4,7 @@ - turbomoleio.testfiles package — turbomoleio 1.3.1 documentation + turbomoleio.testfiles package — turbomoleio 1.4.0 documentation @@ -15,7 +15,7 @@ - + @@ -37,7 +37,7 @@ turbomoleio
- 1.3.1 + 1.4.0
diff --git a/docs/appendix.html b/docs/appendix.html index b88699c..fa864ba 100644 --- a/docs/appendix.html +++ b/docs/appendix.html @@ -4,7 +4,7 @@ - Appendix — turbomoleio 1.3.1 documentation + Appendix — turbomoleio 1.4.0 documentation @@ -15,7 +15,7 @@ - + @@ -37,7 +37,7 @@ turbomoleio
- 1.3.1 + 1.4.0
diff --git a/docs/bugs.html b/docs/bugs.html index 1f737e8..f7411ad 100644 --- a/docs/bugs.html +++ b/docs/bugs.html @@ -4,7 +4,7 @@ - Reporting bugs — turbomoleio 1.3.1 documentation + Reporting bugs — turbomoleio 1.4.0 documentation @@ -15,7 +15,7 @@ - + @@ -36,7 +36,7 @@ turbomoleio
- 1.3.1 + 1.4.0
diff --git a/docs/changelog.html b/docs/changelog.html index 4e519ef..62451d0 100644 --- a/docs/changelog.html +++ b/docs/changelog.html @@ -4,7 +4,7 @@ - Changelog — turbomoleio 1.3.1 documentation + Changelog — turbomoleio 1.4.0 documentation @@ -15,7 +15,7 @@ - + @@ -37,7 +37,7 @@ turbomoleio
- 1.3.1 + 1.4.0
diff --git a/docs/coord.html b/docs/coord.html index 54efbe0..69150fa 100644 --- a/docs/coord.html +++ b/docs/coord.html @@ -4,7 +4,7 @@ - The coord file — turbomoleio 1.3.1 documentation + The coord file — turbomoleio 1.4.0 documentation @@ -15,7 +15,7 @@ - + @@ -37,7 +37,7 @@ turbomoleio
- 1.3.1 + 1.4.0
diff --git a/docs/datagroups.html b/docs/datagroups.html index 31101ec..4427927 100644 --- a/docs/datagroups.html +++ b/docs/datagroups.html @@ -4,7 +4,7 @@ - The data group files — turbomoleio 1.3.1 documentation + The data group files — turbomoleio 1.4.0 documentation @@ -15,7 +15,7 @@ - + @@ -37,7 +37,7 @@ turbomoleio
- 1.3.1 + 1.4.0
diff --git a/docs/definerunner.html b/docs/definerunner.html index 5bb5293..00e627a 100644 --- a/docs/definerunner.html +++ b/docs/definerunner.html @@ -4,7 +4,7 @@ - Running define — turbomoleio 1.3.1 documentation + Running define — turbomoleio 1.4.0 documentation @@ -15,7 +15,7 @@ - + @@ -37,7 +37,7 @@ turbomoleio
- 1.3.1 + 1.4.0
diff --git a/docs/developer/definerunner.html b/docs/developer/definerunner.html index 070602b..7baceda 100644 --- a/docs/developer/definerunner.html +++ b/docs/developer/definerunner.html @@ -4,7 +4,7 @@ - Define runner — turbomoleio 1.3.1 documentation + Define runner — turbomoleio 1.4.0 documentation @@ -15,7 +15,7 @@ - + @@ -37,7 +37,7 @@ turbomoleio
- 1.3.1 + 1.4.0
diff --git a/docs/developer/introduction.html b/docs/developer/introduction.html index 19b6ce9..16df5b7 100644 --- a/docs/developer/introduction.html +++ b/docs/developer/introduction.html @@ -4,7 +4,7 @@ - Contributing — turbomoleio 1.3.1 documentation + Contributing — turbomoleio 1.4.0 documentation @@ -15,7 +15,7 @@ - + @@ -37,7 +37,7 @@ turbomoleio
- 1.3.1 + 1.4.0
diff --git a/docs/developer/parsing_logs.html b/docs/developer/parsing_logs.html index 5ed5546..c46e1fb 100644 --- a/docs/developer/parsing_logs.html +++ b/docs/developer/parsing_logs.html @@ -4,7 +4,7 @@ - Output logs parsing — turbomoleio 1.3.1 documentation + Output logs parsing — turbomoleio 1.4.0 documentation @@ -15,7 +15,7 @@ - + @@ -37,7 +37,7 @@ turbomoleio
- 1.3.1 + 1.4.0
diff --git a/docs/developer/testing.html b/docs/developer/testing.html index 55e6aee..9f664f7 100644 --- a/docs/developer/testing.html +++ b/docs/developer/testing.html @@ -4,7 +4,7 @@ - Testing — turbomoleio 1.3.1 documentation + Testing — turbomoleio 1.4.0 documentation @@ -15,7 +15,7 @@ - + @@ -37,7 +37,7 @@ turbomoleio
- 1.3.1 + 1.4.0
diff --git a/docs/developer/versioning.html b/docs/developer/versioning.html index eb19195..dc4efd7 100644 --- a/docs/developer/versioning.html +++ b/docs/developer/versioning.html @@ -4,7 +4,7 @@ - Versioning — turbomoleio 1.3.1 documentation + Versioning — turbomoleio 1.4.0 documentation @@ -15,7 +15,7 @@ - + @@ -37,7 +37,7 @@ turbomoleio
- 1.3.1 + 1.4.0
diff --git a/docs/genindex.html b/docs/genindex.html index 60ce12f..17f64f3 100644 --- a/docs/genindex.html +++ b/docs/genindex.html @@ -3,7 +3,7 @@ - Index — turbomoleio 1.3.1 documentation + Index — turbomoleio 1.4.0 documentation @@ -14,7 +14,7 @@ - + @@ -34,7 +34,7 @@ turbomoleio
- 1.3.1 + 1.4.0
diff --git a/docs/index.html b/docs/index.html index 4bbd44a..a1201c8 100644 --- a/docs/index.html +++ b/docs/index.html @@ -4,7 +4,7 @@ - turbomoleio — turbomoleio 1.3.1 documentation + turbomoleio — turbomoleio 1.4.0 documentation @@ -15,7 +15,7 @@ - + @@ -36,7 +36,7 @@ turbomoleio
- 1.3.1 + 1.4.0
@@ -99,9 +99,9 @@

turbomoleioTURBOMOLE, based on the open-source pymatgen library. turbomoleio is compatible with python version 3.8 and higher. The current version of turbomoleio is -compatible with TURBOMOLE version 7.5. Care is taken to provide backward compatibility for parsing of output +compatible with TURBOMOLE version 7.6. Care is taken to provide backward compatibility for parsing of output files generated with versions of TURBOMOLE down to 7.3. Full compatibility (i.e. input generation using define) -is only tested for TURBOMOLE version 7.5. The following table summarizes the compatibility (full, including input +is only tested for TURBOMOLE version 7.6. The following table summarizes the compatibility (full, including input generation using define) between TURBOMOLE and turbomoleio versions:

@@ -110,13 +110,16 @@

turbomoleio

+ + + + - + - + diff --git a/docs/license.html b/docs/license.html index 0dfd04d..3cfe3ce 100644 --- a/docs/license.html +++ b/docs/license.html @@ -4,7 +4,7 @@ - License — turbomoleio 1.3.1 documentation + License — turbomoleio 1.4.0 documentation @@ -15,7 +15,7 @@ - + @@ -37,7 +37,7 @@ turbomoleio
- 1.3.1 + 1.4.0
diff --git a/docs/objects.inv b/docs/objects.inv index 6b32926..9ed23fb 100644 Binary files a/docs/objects.inv and b/docs/objects.inv differ diff --git a/docs/output_parsing.html b/docs/output_parsing.html index a9bb0e9..c2012b8 100644 --- a/docs/output_parsing.html +++ b/docs/output_parsing.html @@ -4,7 +4,7 @@ - Outputs parsing — turbomoleio 1.3.1 documentation + Outputs parsing — turbomoleio 1.4.0 documentation @@ -15,7 +15,7 @@ - + @@ -37,7 +37,7 @@ turbomoleio
- 1.3.1 + 1.4.0
diff --git a/docs/py-modindex.html b/docs/py-modindex.html index 807f27b..5111519 100644 --- a/docs/py-modindex.html +++ b/docs/py-modindex.html @@ -3,7 +3,7 @@ - Python Module Index — turbomoleio 1.3.1 documentation + Python Module Index — turbomoleio 1.4.0 documentation @@ -14,7 +14,7 @@ - + @@ -37,7 +37,7 @@ turbomoleio
- 1.3.1 + 1.4.0
diff --git a/docs/search.html b/docs/search.html index 8fdec4c..ece90f3 100644 --- a/docs/search.html +++ b/docs/search.html @@ -3,7 +3,7 @@ - Search — turbomoleio 1.3.1 documentation + Search — turbomoleio 1.4.0 documentation @@ -15,7 +15,7 @@ - + @@ -37,7 +37,7 @@ turbomoleio
- 1.3.1 + 1.4.0
diff --git a/docs/searchindex.js b/docs/searchindex.js index bcfba6d..deca981 100644 --- a/docs/searchindex.js +++ b/docs/searchindex.js @@ -1 +1 @@ -Search.setIndex({"docnames": ["api/modules", "api/turbomoleio", "api/turbomoleio.core", "api/turbomoleio.core.tests", "api/turbomoleio.input", "api/turbomoleio.input.templates", "api/turbomoleio.input.tests", "api/turbomoleio.output", "api/turbomoleio.output.tests", "api/turbomoleio.testfiles", "appendix", "bugs", "changelog", "coord", "datagroups", "definerunner", "developer/definerunner", "developer/introduction", "developer/parsing_logs", "developer/testing", "developer/versioning", "index", "license", "output_parsing"], "filenames": ["api/modules.rst", "api/turbomoleio.rst", "api/turbomoleio.core.rst", "api/turbomoleio.core.tests.rst", "api/turbomoleio.input.rst", "api/turbomoleio.input.templates.rst", "api/turbomoleio.input.tests.rst", "api/turbomoleio.output.rst", "api/turbomoleio.output.tests.rst", "api/turbomoleio.testfiles.rst", "appendix.rst", "bugs.rst", "changelog.rst", "coord.rst", "datagroups.rst", "definerunner.rst", "developer/definerunner.rst", "developer/introduction.rst", "developer/parsing_logs.rst", "developer/testing.rst", "developer/versioning.rst", "index.rst", "license.rst", "output_parsing.rst"], "titles": ["turbomoleio", "turbomoleio package", "turbomoleio.core package", "turbomoleio.core.tests package", "turbomoleio.input package", "turbomoleio.input.templates package", "turbomoleio.input.tests package", "turbomoleio.output package", "turbomoleio.output.tests package", "turbomoleio.testfiles package", "Appendix", "Reporting bugs", "Changelog", "The coord file", "The data group files", "Running define", "Define runner", "Contributing", "Output logs parsing", "Testing", "Versioning", "turbomoleio", "License", "Outputs parsing"], "terms": {"packag": [0, 10, 11, 12, 13, 15, 17, 18, 19, 20, 21, 22], "subpackag": 0, "core": [0, 1, 7, 13, 14, 16], "submodul": [0, 1], "base": [0, 1, 3, 4, 6, 7, 8, 9, 13, 14, 15, 16, 18, 19, 21, 22, 23], "modul": [0, 12, 14, 15, 16, 19, 20, 21, 23], "control": [0, 1, 3, 4, 7, 9, 12, 15, 16, 19, 21, 22, 23], "datagroup": [0, 1, 3, 7, 9, 12, 20, 21, 23], "molecul": [0, 1, 3, 7, 13, 15, 19, 21, 23], "period": [0, 1, 7, 12, 21, 23], "symmetri": [0, 1, 7, 14, 15, 23], "util": [0, 1, 6, 7, 15, 16, 19], "content": [0, 14, 22, 23], "input": [0, 1, 2, 7, 12, 14, 15, 16, 18, 19, 20, 21, 23], "defin": [0, 1, 2, 3, 5, 6, 7, 9, 12, 13, 14, 17, 19, 20, 21, 22], "output": [0, 1, 2, 4, 9, 12, 13, 14, 15, 20, 21, 22], "data": [0, 1, 2, 3, 8, 12, 13, 15, 16, 18, 21, 22], "file": [0, 1, 2, 4, 8, 9, 11, 12, 15, 16, 17, 18, 19, 20, 21, 22], "parser": [0, 1, 8, 9, 18, 19, 21, 23], "state": [0, 1, 2, 4, 14, 15, 21, 22], "testfil": [0, 1, 7, 8, 12, 18, 19], "test": [1, 2, 4, 7, 9, 15, 17, 21], "test_control": [1, 2], "test_datagroup": [1, 2], "test_molecul": [1, 2], "test_period": [1, 2], "test_util": [1, 2, 4], "basesystem": [1, 2], "coord_lin": [1, 2], "to_coord_fil": [1, 2], "to_coord_str": [1, 2], "to_fil": [1, 2, 7, 14], "get_coord_lin": [1, 2], "get_mol_and_indices_frozen": [1, 2], "add_cosmo": [1, 2, 16], "cpc": [1, 2, 14], "energi": [1, 2, 7, 14, 15, 18, 21, 23], "from_fil": [1, 2, 7, 13, 14, 18, 23], "from_metr": [1, 2], "get_charg": [1, 2, 14], "get_shel": [1, 2, 7, 14], "get_subfiles_list": [1, 2], "gradient": [1, 2, 7, 12, 14, 23], "is_uhf": [1, 2, 7], "remove_last_energi": [1, 2], "remove_last_gradi": [1, 2], "set_disp": [1, 2, 14, 16], "default": [1, 2, 4, 7, 9, 14, 15, 18, 19], "metric": [1, 2, 4, 15], "delta_": [1, 2], "from_str": [1, 2, 7, 18], "n_step": [1, 2, 7], "plot": [1, 2, 7, 14, 23], "last_grad_max": [1, 2], "last_grad_norm": [1, 2], "max_gradi": [1, 2], "norm": [1, 2, 7], "shell": [1, 2, 7, 14, 15], "as_dict": [1, 2, 7, 23], "from_dict": [1, 2, 7, 23], "irrep": [1, 2, 7, 15], "to_datagroup": [1, 2], "total_electron": [1, 2, 7], "adg": [1, 2, 14], "cdg": [1, 2, 9, 14, 15], "kdg": [1, 2, 14], "mdgo": [1, 2, 14], "sdg": [1, 2, 14], "sdgo": [1, 2, 14], "add_data_group": [1, 2, 14], "change_data_group": [1, 2, 14, 16], "compar": [1, 2, 3, 7, 8, 9, 18, 19], "empti": [1, 2, 7, 14, 15, 23], "kill_data_group": [1, 2, 14], "modify_data_group_opt": [1, 2, 14], "ndg": [1, 2], "number_of_data_group": [1, 2], "show_data_group": [1, 2, 14], "show_data_group_opt": [1, 2, 14], "show_subfile_fnam": [1, 2], "cleanup_str": [1, 2], "compare_datagroup_str": [1, 2], "remove_com": [1, 2], "remove_dg_from_list": [1, 2], "split_string_to_dg_list": [1, 2], "bondangl": [1, 2], "compute_valu": [1, 2], "coord_str": [1, 2], "coord_typ": [1, 2], "n_atom": [1, 2], "collinearbendingangl": [1, 2], "dihedralangl": [1, 2], "distanc": [1, 2, 7, 13, 15], "internaldefinit": [1, 2, 13], "get_subclass_from_str": [1, 2], "is_valid": [1, 2], "to_str": [1, 2], "inversedist": [1, 2], "moleculesystem": [1, 2, 13, 21], "add_bond_angl": [1, 2, 13], "add_dihedr": [1, 2], "add_dist": [1, 2, 13], "get_int_def_inconsist": [1, 2], "has_inconsist": [1, 2], "outofplaneangl": [1, 2], "perpendicularbendingangl": [1, 2], "periodicsystem": [1, 2, 12, 13], "structur": [1, 2, 3, 7, 9, 12, 13, 14, 18, 19, 21], "define_quit": [1, 2], "get_tm_vers": [1, 2], "templat": [1, 4, 6, 12, 15], "test_defin": [1, 4], "defineerror": [1, 4, 15, 16], "defineexpecterror": [1, 4, 15], "defineirederror": [1, 4], "defineparametererror": [1, 4], "definerunn": [1, 4, 6, 9, 16, 19, 21], "dump_command_fil": [1, 4], "run_ful": [1, 4, 15, 16], "run_generate_mo_fil": [1, 4, 15, 16], "run_update_internal_coord": [1, 4, 15, 16], "unsupporteddefinestateerror": [1, 4], "parametersvalidationerror": [1, 4], "ex_sett": [1, 4], "get_define_templ": [1, 4, 15], "schema_define_param": [1, 4, 16], "validate_paramet": [1, 4, 15], "test_data": [1, 7], "test_fil": [1, 7, 18], "test_pars": [1, 7, 18], "test_stat": [1, 7], "aoforcenumericalintegrationdata": [1, 7, 23], "from_pars": [1, 7, 18, 23], "aoforcerotationaldata": [1, 7, 23], "aoforcevibrationaldata": [1, 7, 23], "get_freqs_df": [1, 7], "n_negative_freq": [1, 7], "n_positive_freq": [1, 7], "n_zero_freq": [1, 7], "basedata": [1, 7, 9, 18], "basisdata": [1, 7, 23], "cosmodata": [1, 7, 23], "dftdata": [1, 7, 23], "dispersioncorrectiondata": [1, 7, 23], "electrostaticmomentsdata": [1, 7, 23], "escfdata": [1, 7, 23], "escfiterationdata": [1, 7, 23], "functionaldata": [1, 7, 23], "geometrydata": [1, 7, 23], "integraldata": [1, 7, 23], "mp2data": [1, 7, 23], "mp2result": [1, 7, 23], "periodicitydata": [1, 7, 23], "relaxconvergencedata": [1, 7, 23], "relaxdata": [1, 7, 23], "relaxgradientsdata": [1, 7, 23], "ridata": [1, 7, 23], "rundata": [1, 7, 23], "scfdata": [1, 7, 23], "scfenergiesdata": [1, 7, 18, 23], "scfiterationdata": [1, 7, 23], "plot_energi": [1, 7, 23], "singleexcit": [1, 7], "smearingdata": [1, 7, 23], "spindata": [1, 7, 23], "statptdata": [1, 7, 23], "symmetrydata": [1, 7, 23], "turbomoledata": [1, 7, 23], "aoforceoutput": [1, 7, 23], "egradoutput": [1, 7, 23], "escfonlyoutput": [1, 7, 18, 23], "escfoutput": [1, 7, 23], "gradoutput": [1, 7, 23], "jobexoutput": [1, 7, 23], "mp2output": [1, 7, 23], "relaxoutput": [1, 7, 23], "ricc2output": [1, 7, 23], "scfoutput": [1, 7, 23], "statptoutput": [1, 7, 23], "all_don": [1, 7], "aoforce_analysi": [1, 7], "aoforce_numerical_integr": [1, 7], "basi": [1, 2, 4, 7, 15, 18, 23], "center": [1, 7, 23], "coordin": [1, 2, 4, 7, 12, 13, 15], "cosmo_head": [1, 7], "cosmo_result": [1, 7], "density_functional_data": [1, 7], "dftd": [1, 7], "egrad_excited_st": [1, 7], "electrostatic_mo": [1, 7], "escf_excit": [1, 7], "escf_gs_total_en": [1, 7], "escf_iter": [1, 7], "fermi": [1, 7], "get_split_jobex_pars": [1, 7], "get_valu": [1, 7], "grep_lin": [1, 7], "header": [1, 2, 7, 18], "integr": [1, 7, 9, 16, 17, 21, 23], "mp2_data": [1, 7], "mp2_result": [1, 7], "periodicity_data": [1, 7], "pre_escf_run": [1, 7], "pre_scf_run": [1, 7], "rdgrad_memori": [1, 7], "relax_conv_info": [1, 7], "relax_gradient_valu": [1, 7], "relax_info": [1, 7], "rij_info": [1, 7], "riper_scf_energi": [1, 7], "s2": [1, 7], "scf_energi": [1, 7], "scf_iter": [1, 7], "statpt_info": [1, 7], "string": [1, 2, 3, 4, 6, 7, 8, 9, 14, 15, 16, 18, 20, 23], "time": [1, 4, 7, 14, 15, 19, 22, 23], "convert_float": [1, 7], "convert_int": [1, 7], "convert_time_str": [1, 7], "eigeroutput": [1, 7], "compare_st": [1, 7], "eigerrunn": [1, 7], "get_eiger_output": [1, 7], "run": [1, 2, 4, 7, 9, 12, 14, 16, 18, 19, 21, 22], "has_fractional_occ": [1, 7], "max_occup": [1, 7], "eigenvalu": [1, 7, 19, 23], "filter_st": [1, 7], "gap": [1, 7, 23], "generate_lowest_filled_st": [1, 7], "has_hol": [1, 7, 23], "homo": [1, 7], "homo_index": [1, 7], "insert": [1, 7, 15], "irrep_indic": [1, 7], "lumo": [1, 7], "lumo_index": [1, 7], "n_state": [1, 7], "occup": [1, 2, 7, 23], "spin": [1, 7, 23], "get_mos_energi": [1, 7], "itestconfig": [1, 9], "define_timeout": [1, 9], "delete_tmp_dir": [1, 3, 6, 8, 9, 19], "dryrun": [1, 9, 19], "dryrun_fpath": [1, 9], "dryrun_use_ref_control": [1, 9], "generate_ref": [1, 9], "tol": [1, 2, 7, 9, 19], "itesterror": [1, 9], "assert_mson": [1, 9], "assert_almost_equ": [1, 9, 19], "compare_differ": [1, 9], "generate_control_for_test": [1, 9], "generate_reference_out_parser_fil": [1, 9], "generate_reference_output": [1, 9], "get_control_filepath": [1, 9], "get_control_integr": [1, 9], "get_sp": [1, 9], "get_tfp": [1, 9], "gisnan": [1, 9], "has_matplotlib": [1, 9], "run_itest": [1, 9, 19], "temp_dir": [1, 9, 19], "touch_fil": [1, 9], "i": [1, 2, 3, 4, 7, 8, 9, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23], "act": [1, 14], "an": [1, 2, 4, 7, 9, 13, 14, 15, 16, 17, 18, 19, 21, 22, 23], "interfac": [1, 4, 9, 12, 21, 22], "turbomol": [1, 2, 7, 9, 11, 12, 13, 14, 15, 16, 18, 20, 21, 23], "It": [1, 2, 3, 7, 14, 15, 17, 18, 19, 22], "allow": [1, 2, 4, 7, 8, 9, 13, 14, 15, 16, 18, 19, 22], "gener": [1, 2, 4, 7, 8, 9, 12, 13, 14, 15, 17, 18, 19, 20, 21, 22, 23], "pars": [1, 2, 7, 8, 12, 13, 14, 16, 20, 21], "easili": [1, 7, 15, 18, 19, 23], "thi": [1, 2, 4, 6, 7, 8, 9, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23], "root": [1, 7, 19, 23], "testcontrol": [2, 3], "test_add_cosmo": [2, 3, 4, 6], "test_cpc": [2, 3], "test_disp": [2, 3], "test_energi": [2, 3], "test_from_fil": [2, 3], "test_from_metr": [2, 3], "test_get_charg": [2, 3], "test_get_shel": [2, 3], "test_get_subfiles_list": [2, 3], "test_gradi": [2, 3], "test_is_uhf": [2, 3], "test_remove_energi": [2, 3], "test_remove_energy_in_control": [2, 3], "test_remove_gradi": [2, 3], "test_remove_gradient_in_control": [2, 3], "testdatagroupfunct": [2, 3], "pytestmark": [2, 3, 19], "test_adg": [2, 3], "test_cdg": [2, 3], "test_kdg": [2, 3], "test_mdgo": [2, 3], "test_sdg": [2, 3], "test_sdgo": [2, 3], "testenergi": [2, 3], "test_energy_mp2": [2, 3], "test_energy_scf": [2, 3], "testgradi": [2, 3], "test_empty_gradi": [2, 3], "test_fail_pars": [2, 3], "testshel": [2, 3], "test_clos": [2, 3, 4, 6, 7, 8], "test_fract": [2, 3], "test_uhf": [2, 3, 7, 8], "check_equivalent_dg": [2, 3], "test_cleanup": [2, 3], "test_compar": [2, 3], "test_compare_datagroup_str": [2, 3], "test_empti": [2, 3], "test_modify_data_group_opt": [2, 3], "test_remove_com": [2, 3], "test_remove_dg_from_list": [2, 3], "test_sdg_subfil": [2, 3], "test_show_data_group_opt": [2, 3], "test_show_subfile_fnam": [2, 3], "test_split_string_to_dg_list": [2, 3], "testinternaldefinit": [2, 3], "test_bond_angl": [2, 3], "test_collinear_bending_angl": [2, 3], "test_dihedral_angl": [2, 3], "test_dist": [2, 3], "test_from_str": [2, 3], "test_inverse_dist": [2, 3], "test_out_of_plane_angl": [2, 3], "test_perpendicular_bending_angl": [2, 3], "testmoleculesystem": [2, 3], "test_add_bond_angl": [2, 3], "test_add_dihedr": [2, 3], "test_add_dist": [2, 3], "test_check_index": [2, 3], "test_disord": [2, 3], "test_dummy_atom": [2, 3], "test_to_coord_str": [2, 3], "test_to_fil": [2, 3], "check_dg": [2, 3], "check_user_defined_bonds_dg": [2, 3], "testperiodicsystem": [2, 3], "test_periodic_2d": [2, 3], "test_periodic_3d": [2, 3], "test_periodic_wrong_rot": [2, 3], "test_read_periodic_2d": [2, 3], "testgetvers": [2, 3], "test_v72": [2, 3], "test_v731": [2, 3], "test_v741": [2, 3], "test_v751": [2, 3], "object": [2, 3, 4, 6, 7, 8, 9, 12, 13, 15, 16, 17, 18, 19, 21, 22], "repres": [2, 3, 7, 13, 15, 19, 22], "physic": [2, 7, 19, 22], "system": [2, 4, 7, 12, 14, 15, 19, 21, 22, 23], "class": [2, 3, 4, 6, 7, 8, 9, 18, 19, 22, 23], "molecule_or_structur": 2, "frozen_indic": [2, 13], "none": [2, 4, 6, 7, 8, 9, 14, 15, 18, 23], "0": [2, 4, 7, 9, 13, 19, 20, 21, 22, 23], "sourc": [2, 3, 4, 6, 7, 8, 9, 17, 19, 21, 22], "msonabl": [2, 7, 9, 21, 23], "common": [2, 7, 15, 18, 21, 22], "construct": [2, 4, 7, 8, 15], "paramet": [2, 3, 4, 6, 7, 8, 9, 16, 19, 21], "pymatgen": [2, 13, 21], "set": [2, 3, 4, 7, 9, 13, 14, 15, 16, 18, 19, 21, 23], "indic": [2, 7, 13, 22], "atom": [2, 7, 12, 13, 15], "should": [2, 3, 4, 6, 7, 8, 9, 13, 14, 15, 16, 17, 18, 19, 20, 22, 23], "have": [2, 6, 13, 14, 15, 17, 18, 19, 21, 22, 23], "fix": [2, 16, 19, 20, 21, 22], "cartesian": [2, 7, 13], "1": [2, 7, 9, 13, 15, 19, 20, 21, 22, 23], "2": [2, 4, 7, 9, 13, 15, 19, 21, 22], "3": [2, 7, 13, 15, 17, 19, 20, 21, 22], "give": [2, 11, 19, 22], "line": [2, 3, 7, 13, 14, 15, 18, 19, 22], "coord": [2, 3, 4, 7, 9, 14, 15, 19, 21], "intern": [2, 4, 7, 13, 14, 15, 16, 23], "return": [2, 3, 4, 6, 7, 9, 14, 15, 16, 18, 19, 22, 23], "list": [2, 3, 4, 6, 7, 8, 9, 13, 14, 15, 16, 18, 19, 22, 23], "type": [2, 3, 4, 7, 8, 9, 13, 14, 15, 16, 21, 22, 23], "filepath": [2, 4, 7], "write": [2, 7, 14, 18, 21, 22], "str": [2, 3, 4, 7, 9, 15], "path": [2, 4, 7, 9, 14, 15, 16, 19, 23], "abstract": [2, 7, 17, 18], "creat": [2, 4, 7, 9, 12, 15, 16, 18, 19, 20, 23], "implement": [2, 4, 9, 14, 15, 16, 17, 18, 19, 22, 23], "separ": [2, 6, 8, 14, 19, 22], "fmt": 2, "depend": [2, 4, 7, 15, 18, 19], "specifi": [2, 7, 9, 11, 14, 15, 22], "format": [2, 7, 13, 14, 17, 19, 21, 22], "The": [2, 3, 4, 7, 8, 9, 16, 17, 18, 20, 21, 22], "can": [2, 4, 7, 9, 11, 13, 14, 15, 16, 17, 18, 19, 21, 22, 23], "ani": [2, 7, 9, 14, 15, 16, 19, 22], "other": [2, 4, 6, 7, 8, 9, 13, 14, 15, 16, 17, 18, 19, 22, 23], "support": [2, 7, 9, 14, 15, 17, 18, 19, 20, 22], "could": [2, 7, 13, 16, 18, 19, 22, 23], "If": [2, 4, 7, 8, 9, 14, 15, 16, 18, 19, 22, 23], "code": [2, 4, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 22, 23], "would": [2, 7, 13, 15, 16, 17, 18, 19, 22, 23], "try": [2, 11, 14, 16], "infer": 2, "from": [2, 3, 4, 7, 8, 9, 12, 13, 14, 15, 16, 17, 18, 19, 21, 22, 23], "name": [2, 3, 4, 7, 8, 9, 14, 15, 16, 18, 19, 22, 23], "contain": [2, 7, 9, 11, 12, 13, 14, 15, 16, 18, 19, 21, 22, 23], "convert": [2, 4, 7, 9, 14, 17, 18, 23], "frozen": [2, 7, 13], "f": [2, 7, 13, 22], "append": [2, 9, 13, 19], "end": [2, 4, 7, 9, 13, 14, 15, 18, 22], "cell_str": 2, "periodic_str": 2, "lattice_str": 2, "periodic_extens": 2, "5": [2, 12, 13, 15, 19, 20, 21, 22], "get": [2, 6, 7, 9, 14, 18, 19, 22], "cell": 2, "For": [2, 7, 11, 13, 14, 15, 16, 18, 19, 20, 22, 23], "1d": [2, 7], "consist": [2, 12, 22], "singl": [2, 7, 9, 14, 15, 18, 19, 20, 22, 23], "number": [2, 3, 7, 9, 14, 15, 20, 22], "lattic": [2, 7, 12], "2d": [2, 7], "b": [2, 4, 7, 14, 15, 22], "gamma": [2, 7], "angl": [2, 7], "between": [2, 7, 9, 14, 15, 19, 21, 22], "3d": [2, 7], "6": [2, 7, 15, 19, 22], "c": [2, 7, 14, 15, 22], "alpha": [2, 7, 14, 15], "beta": [2, 7, 14, 15], "onli": [2, 4, 7, 8, 9, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23], "both": [2, 9, 14, 18, 19, 22, 23], "describ": [2, 4, 7, 14, 16, 17, 18, 19, 23], "matrix": [2, 7, 15], "float": [2, 3, 4, 7, 9, 15, 18], "amount": [2, 19, 21], "angstrom": [2, 7, 13, 15], "artifici": 2, "ad": [2, 14, 15, 16, 18, 19, 21, 22], "vacuum": 2, "non": [2, 7, 22], "direct": [2, 7, 19, 22], "when": [2, 4, 7, 13, 14, 15, 16, 17, 18, 19, 20, 22], "ar": [2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 16, 17, 18, 19, 21, 22, 23], "provid": [2, 4, 7, 8, 11, 13, 14, 15, 16, 17, 18, 19, 21, 22, 23], "namedtupl": [2, 7], "function": [2, 3, 4, 6, 7, 8, 9, 13, 14, 15, 16, 18, 19, 20, 22, 23], "interact": [2, 14, 15, 22, 23], "directli": [2, 7, 14, 15, 16, 18, 19, 22, 23], "also": [2, 4, 7, 11, 13, 14, 15, 16, 17, 18, 19, 20, 22, 23], "relat": [2, 4, 12, 15, 23], "e": [2, 4, 7, 11, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23], "g": [2, 4, 7, 11, 14, 15, 18, 19, 20, 23], "etc": 2, "dg_list": [2, 14], "us": [2, 4, 7, 8, 9, 11, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23], "store": [2, 7, 8, 9, 12, 13, 14, 15, 18, 19, 20, 21, 23], "group": [2, 3, 13, 15, 16, 18, 19, 21, 23], "A": [2, 7, 8, 12, 14, 15, 17, 18, 19, 22], "kei": [2, 7, 9, 14, 15, 22], "valu": [2, 3, 4, 7, 8, 9, 13, 15, 16, 18, 19, 21, 23], "pair": 2, "specif": [2, 4, 6, 7, 8, 12, 13, 14, 15, 16, 17, 18, 19, 20, 22, 23], "mai": [2, 6, 7, 12, 14, 18, 19, 22], "seri": [2, 14, 18, 19, 20, 21, 23], "combin": [2, 7, 15, 18, 22], "thereof": 2, "initi": [2, 7, 14, 19, 22, 23], "usual": [2, 7, 14, 15, 18, 23], "read": [2, 7, 13, 14, 19, 20, 21, 22, 23], "epsilon": [2, 4, 7, 15], "nppa": [2, 4, 7, 15], "nspa": [2, 4, 7, 15], "disex": [2, 4, 7, 15], "rsolv": [2, 4, 7, 15], "routf": [2, 4, 7, 15], "caviti": [2, 4, 7, 15], "use_old_amat": [2, 4, 15], "add": [2, 7, 14, 15, 16, 18, 19, 20, 22], "cosmo": [2, 3, 7, 15, 23], "keyword": [2, 7, 9, 14, 15], "option": [2, 4, 7, 9, 13, 14, 15, 16, 18, 19, 22, 23], "all": [2, 3, 4, 6, 7, 8, 9, 12, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23], "written": [2, 4, 13, 14, 17, 19, 22, 23], "permitt": [2, 15], "scale": [2, 15], "screen": [2, 7, 15], "charg": [2, 4, 7, 15, 18, 22, 23], "int": [2, 4, 7, 15], "grid": [2, 7, 15, 23], "point": [2, 7, 15, 16, 18, 19, 20], "per": [2, 7, 15], "segment": [2, 15], "threshold": [2, 7, 15, 23], "element": [2, 3, 7, 9, 14, 15], "outer": [2, 15], "solvent": [2, 15], "sphere": [2, 15], "factor": [2, 7, 15], "outli": [2, 15], "correct": [2, 7, 8, 9, 12, 14, 15, 16, 19, 22, 23], "accept": [2, 15, 16, 17, 18, 22], "open": [2, 11, 14, 15, 21], "leav": [2, 15, 19], "untidi": [2, 15], "seam": [2, 15], "close": [2, 7, 14, 15, 22], "pave": [2, 15], "intersect": [2, 15], "bool": [2, 4, 7, 8, 9, 15], "true": [2, 3, 4, 7, 8, 9, 13, 14, 15, 19], "setup": [2, 15, 19, 20], "7": [2, 12, 15, 19, 20, 21, 22], "dest_dir": 2, "force_overwrit": 2, "fals": [2, 4, 7, 8, 9, 14, 15, 19], "copi": [2, 4, 15, 22], "referenc": [2, 19], "here": [2, 7, 8, 9, 14, 16, 17, 18, 19, 23], "destin": 2, "folder": [2, 4, 8, 9, 12, 14, 15, 17, 18, 19], "alreadi": [2, 4, 8, 14, 15, 16, 18, 19, 22], "exist": [2, 9, 13, 14, 15, 16, 18, 19], "present": [2, 4, 7, 13, 14, 15, 17, 19, 22], "overwritten": [2, 8], "properti": [2, 7, 8, 13, 18, 22, 23], "absent": [2, 7], "miss": [2, 7, 14, 15, 18], "classmethod": [2, 7], "filenam": [2, 7, 9], "given": [2, 3, 4, 7, 9, 13, 14, 15, 16, 18, 19, 20, 22, 23], "which": [2, 7, 8, 9, 11, 13, 14, 16, 18, 19, 22, 23], "new": [2, 7, 11, 12, 14, 15, 16, 17, 20, 21, 22], "redund_inp": 2, "extract": [2, 7, 12, 14, 15, 18, 19, 21, 23], "xxx": 2, "shells_typ": 2, "instanc": [2, 7, 9, 13, 14, 15, 16, 18, 23], "form": [2, 9, 13, 15, 22, 23], "grad": [2, 7, 12, 23], "determin": [2, 7, 9, 13, 14, 15, 19, 22, 23], "uhf": [2, 7, 14, 15, 23], "backup_suffix": 2, "remov": [2, 3, 7, 9, 14, 18, 19, 22], "last": [2, 7, 13, 23], "step": [2, 7, 14, 15, 22, 23], "In": [2, 3, 7, 8, 13, 14, 15, 16, 17, 18, 19, 20, 22, 23], "addit": [2, 3, 9, 12, 13, 14, 15, 16, 18, 19, 20, 22, 23], "origin": [2, 9, 14, 19, 22], "locat": [2, 17, 19], "n": [2, 4, 13, 15], "extern": [2, 11, 19, 23], "call": [2, 6, 7, 13, 14, 15, 16, 18, 19, 22, 23], "current": [2, 4, 7, 12, 14, 15, 17, 18, 19, 21], "modif": [2, 9, 12, 19, 20, 22], "been": [2, 4, 6, 7, 12, 15, 16, 18, 19, 21, 22, 23], "done": [2, 6, 7, 8, 13, 14, 15, 16, 19], "well": [2, 12, 13, 15, 18, 19, 20, 22, 23], "case": [2, 3, 4, 7, 8, 9, 14, 15, 16, 17, 18, 19, 22], "ignor": [2, 3, 7, 15], "rais": [2, 3, 4, 7, 9, 14, 15, 16, 19], "runtimeerror": [2, 7], "dispersion_correct": [2, 7], "dispers": [2, 7, 14, 15, 23], "method": [2, 4, 6, 7, 8, 9, 13, 14, 15, 16, 18, 19, 22, 23], "dft": [2, 4, 7, 14, 15, 23], "d1": [2, 4, 7, 15], "d2": [2, 4, 7, 15], "d3": [2, 4, 15], "bj": [2, 4, 15], "insensit": 2, "disp": [2, 4, 15], "elimin": 2, "collect": [2, 19, 22, 23], "tm": [2, 7], "execut": [2, 4, 7, 9, 14, 15, 16, 18, 19, 20, 21, 22, 23], "some": [2, 4, 7, 9, 12, 14, 15, 16, 18, 19, 22, 23], "scf": [2, 7, 15, 23], "scfkin": 2, "scfpot": 2, "mp2": [2, 4, 7, 12, 15, 23], "calcul": [2, 7, 8, 9, 12, 13, 15, 16, 18, 19, 21, 23], "kinet": [2, 7], "contribut": [2, 7, 11, 16, 19, 23], "potenti": [2, 7, 13, 16, 18], "total": [2, 7], "count": 2, "variat": 2, "less": [2, 23], "than": [2, 7, 14, 15, 18, 22, 23], "come": [2, 7, 15, 18, 19, 22, 23], "subfil": [2, 14, 23], "ax": [2, 7], "kwarg": [2, 3, 7], "evolut": [2, 7, 14], "matplotlib": [2, 7, 9], "figur": [2, 7, 15], "argument": [2, 4, 7, 9, 14, 15, 19], "pass": [2, 4, 7, 9, 14, 15, 16, 19, 22], "displai": [2, 7, 22], "mean": [2, 7, 12, 14, 18, 19, 22, 23], "titl": [2, 4, 7, 15], "show": [2, 7, 22], "savefig": [2, 7], "abc": [2, 7, 23], "png": [2, 7], "ep": [2, 7], "save": [2, 7], "size_kwarg": [2, 7], "dictionari": [2, 4, 7, 9, 14, 15, 16, 18, 23], "fig": [2, 7], "set_size_inch": [2, 7], "dict": [2, 4, 7, 9, 15], "w": [2, 7, 22], "h": [2, 7], "4": [2, 4, 7, 12, 13, 15, 19, 20, 21, 22], "tight_layout": [2, 7], "ax_grid": [2, 7], "left": [2, 7], "unchang": [2, 7], "ax_annot": [2, 7], "label": [2, 7], "subplot": [2, 7], "fig_clos": [2, 7], "lattice_vector": 2, "lattice_gradi": 2, "shape": [2, 7], "nstep": 2, "natom": [2, 7], "each": [2, 7, 9, 13, 14, 15, 18, 19, 22, 23], "perform": [2, 6, 7, 9, 12, 13, 14, 15, 16, 18, 19, 22, 23], "riper": [2, 7, 12, 23], "vector": [2, 7], "size": [2, 7, 15, 23], "dimension": [2, 12, 13], "one": [2, 3, 4, 7, 8, 9, 13, 14, 15, 16, 18, 19, 22, 23], "note": [2, 7, 9, 12, 13, 14, 15, 18, 19, 21, 23], "either": [2, 18, 19, 22], "differ": [2, 3, 7, 8, 9, 13, 14, 15, 16, 18, 19, 20, 22, 23], "One": [2, 7], "thu": [2, 15, 16, 18, 19, 20, 22, 23], "gradlatt": 2, "maximum": [2, 4, 7, 15], "largest": 2, "map": 2, "handl": [2, 4, 7, 12, 18], "integ": [2, 4], "fraction": [2, 7, 19], "presenc": [2, 14, 19], "same": [2, 3, 7, 13, 14, 18, 19, 22, 23], "multipl": [2, 7, 15, 19], "tupl": [2, 7, 8, 9, 13], "irrep_index": [2, 7], "occupi": [2, 7, 14, 23], "json": [2, 3, 7, 8, 9, 15, 18, 19, 21], "serializ": [2, 7], "represent": [2, 7, 14, 23], "d": [2, 7, 19, 22], "serial": [2, 12, 18, 19], "valueerror": [2, 7], "exampl": [2, 7, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23], "a1": [2, 7, 15], "b1": [2, 7], "b2": [2, 7], "irreduc": [2, 7, 14, 23], "electron": [2, 7, 15, 22], "data_group": [2, 14], "data_block": [2, 14], "backup_fil": 2, "comment": [2, 3, 14, 15, 17], "dollar": [2, 14], "sign": [2, 14, 22], "automat": [2, 7, 12, 13, 14, 16, 17, 19, 22], "block": [2, 14], "correspond": [2, 7, 8, 13, 14, 16, 18, 19, 20, 22], "back": [2, 9, 19, 23], "up": [2, 14, 15, 18, 19], "backup": 2, "replac": [2, 14, 19], "equival": [2, 3, 7, 9, 14, 18, 19, 22], "To": [2, 14, 19, 20, 22], "explicit": [2, 9, 14, 19], "simpli": [2, 7, 14, 16, 18], "control_dir": 2, "its": [2, 4, 7, 8, 13, 14, 15, 16, 19, 22, 23], "anoth": [2, 14, 19], "doe": [2, 14, 15, 22, 23], "directori": [2, 4, 7, 9, 14, 15, 19], "dir": 2, "strict": [2, 14, 19], "exact": [2, 14, 18, 22], "match": [2, 6, 7, 14, 19], "start": [2, 7, 14, 15, 16, 18, 19, 20, 21, 22], "modifi": [2, 7, 15, 16, 18, 19, 20, 21, 22], "sever": [2, 7, 18, 19, 21, 23], "updat": [2, 4, 7, 12, 14, 15, 18, 19, 20, 22], "accord": [2, 4, 7, 14, 15, 16, 17, 22], "option_name1": 2, "option_valu": 2, "option_name2": 2, "identifi": [2, 7, 9, 14, 16, 19, 20, 22], "entir": [2, 14, 18, 19, 22], "sinc": [2, 9, 14, 15, 16, 17, 18, 19, 23], "wai": [2, 4, 7, 14, 15, 16, 18, 19, 21, 22, 23], "attempt": [2, 22], "made": [2, 18, 22], "suitabl": [2, 7, 16, 17, 18, 19], "respons": [2, 14, 15, 16, 22], "caller": 2, "safer": 2, "chang": [2, 4, 7, 8, 13, 14, 17, 18, 20, 21, 22], "show_from_subfil": [2, 14], "raise_if_multiple_subfil": 2, "raise_if_missing_subfil": 2, "raise_if_regular_and_subfil": 2, "full": [2, 7, 9, 14, 15, 16, 21, 22], "just": [2, 14, 15, 18, 23], "so": [2, 14, 15, 16, 18, 19, 21, 22, 23], "correctli": [2, 18, 19], "within": [2, 7, 9, 15, 22], "suppos": 2, "whether": [2, 7, 9, 19, 22], "error": [2, 4, 7, 9, 14, 15, 16, 19], "standard": [2, 4, 7, 14, 15, 17, 22], "refer": [2, 3, 8, 9, 12, 13, 14, 16, 18, 19, 22], "regular": [2, 18, 23], "select": [2, 7, 14, 15], "found": [2, 4, 7, 9, 14, 17, 18, 19, 21, 22, 23], "includ": [2, 7, 14, 16, 21, 22], "anyth": [2, 22], "after": [2, 7, 14, 15, 16, 18, 19, 22], "symbol": [2, 7, 13, 14], "like": [2, 4, 7, 8, 9, 12, 13, 14, 15, 17, 18, 19, 20, 21, 22, 23], "queri": 2, "model": [2, 22], "manipul": 2, "convent": [2, 13, 14, 16, 17, 19], "fashion": [2, 22], "mani": 2, "human": 2, "readabl": [2, 22], "ascii": 2, "formal": 2, "split": [2, 3, 7, 14], "optim": [2, 7, 13, 14], "associ": [2, 7, 22, 23], "word": [2, 14], "veri": [2, 16, 18, 19], "larg": [2, 15], "molecular": [2, 4, 7, 15], "orbit": [2, 4, 7, 15, 23], "scfmo": [2, 23], "mo": [2, 7, 15], "complet": [2, 4, 7, 13, 14, 15, 16, 23], "descript": [2, 7, 16, 19, 23], "user": [2, 3, 8, 13, 14, 15, 16, 17, 18, 22, 23], "": [2, 7, 16, 18, 21, 22], "manual": [2, 15], "avail": [2, 4, 7, 12, 13, 14, 15, 16, 18, 19, 21, 22, 23], "unnecessari": [2, 22], "space": [2, 3, 7, 14], "kept": [2, 18, 19], "appli": [2, 12, 14, 15, 19, 22], "interfer": 2, "actual": [2, 7, 9, 15, 19, 22], "alwai": [2, 4, 7, 9, 13, 14, 16, 18, 19], "first": [2, 3, 4, 7, 9, 12, 14, 16, 18, 19, 22, 23], "move": [2, 14, 19], "befor": [2, 4, 7, 9, 14, 15, 16, 18, 19, 21, 23], "ignored_dg": 2, "return_all_diff": 2, "asid": [2, 19], "two": [2, 3, 7, 9, 15, 19, 22], "chunk": [2, 7], "exactli": [2, 6, 18, 19], "except": [2, 3, 4, 6, 7, 9, 14, 15, 17, 19, 22], "thei": [2, 4, 7, 9, 13, 14, 17, 18, 19, 21, 22, 23], "lower": [2, 7, 19, 23], "toler": [2, 7, 9, 15, 18, 19], "otherwis": [2, 4, 7, 15, 18, 19, 22], "messag": [2, 4, 7, 9], "caus": [2, 22], "fail": [2, 3, 4, 7, 8, 9, 15, 16, 19, 22, 23], "varieti": [2, 15], "notat": [2, 7], "intend": [2, 19, 22], "more": [2, 13, 14, 16, 17, 18, 19, 21, 22, 23], "purpos": [2, 22], "rather": 2, "tool": [2, 4, 16, 19, 21, 22], "guarante": [2, 22], "even": [2, 4, 7, 9, 15, 16, 19, 22], "comparison": [2, 3, 9, 19], "expect": [2, 4, 6, 7, 9, 12, 15, 16, 19, 22], "skip": [2, 4, 9, 16], "result": [2, 7, 13, 14, 15, 19, 22, 23], "occurr": [2, 7], "coexist": 2, "shown": [2, 14, 19], "anywai": [2, 15, 19], "cleanup_typ": 2, "clean": [2, 12, 14], "everyth": [2, 14], "blank": [2, 14], "tab": [2, 14], "typic": [2, 14, 15, 22], "cleanup": [2, 3], "valid": [2, 4, 7, 14, 21, 22], "before_first_dollar": 2, "blank_lin": 2, "leading_spaces_dollar": 2, "leading_spaces_hash": 2, "four": 2, "hash": 2, "preced": [2, 7], "charact": 2, "dg1": [2, 3], "dg2": [2, 3], "second": [2, 3, 7, 15, 19, 23], "comment_typ": 2, "inform": [2, 4, 7, 11, 12, 13, 18, 19, 22, 23], "three": [2, 7, 15, 22, 23], "dummi": [2, 14], "span": 2, "inlin": [2, 14], "newlin": 2, "hash_start": 2, "after_end": 2, "hash_inlin": 2, "without": [2, 4, 8, 12, 13, 14, 18, 19, 22], "dg_to_remov": 2, "duplic": 2, "usag": 2, "follow": [2, 4, 7, 13, 14, 15, 16, 17, 18, 19, 21, 22, 23], "remove_comment_typ": 2, "five": 2, "incorrectli": 2, "respect": [2, 7, 14, 19, 22, 23], "redund": [2, 13, 18], "off": [2, 7, 16], "global": [2, 19], "statu": [2, 13, 22], "weight": 2, "bond": [2, 3, 13], "bend": [2, 13], "k": [2, 13, 19], "involv": [2, 18], "linear": 2, "consid": [2, 4, 7, 14, 15, 16, 18, 19, 22, 23], "length": [2, 7], "collinear": 2, "linc": 2, "dihedr": 2, "tor": [2, 13], "stre": [2, 13], "definit": [2, 7, 9, 12, 13, 15, 19, 22], "establish": 2, "notimpl": 2, "concret": 2, "subclass": [2, 7, 9, 13, 14, 15, 16, 18, 19, 23], "intdef": [2, 3, 13], "static": [2, 6], "appropri": [2, 18, 19, 22], "0001": [2, 9], "check": [2, 3, 4, 6, 7, 9, 12, 14, 15, 16, 18, 19, 23], "posit": [2, 7], "index": [2, 7, 21, 23], "prepend": [2, 14], "insid": [2, 9, 15, 16, 18, 19, 22], "invers": 2, "invr": 2, "int_def": [2, 13], "user_defined_bond": [2, 13], "about": [2, 7, 11, 13, 15, 16, 18, 19, 21, 22, 23], "geometri": [2, 4, 7, 13, 14, 15, 23], "dynam": [2, 13, 15, 22], "while": [2, 13, 14, 15, 16, 18, 19], "constraint": [2, 18], "attribut": [2, 9, 13, 14, 15, 16, 18, 19, 22, 23], "notabl": 2, "inconsist": 2, "obtain": [2, 7, 8, 14, 18, 23], "order": [2, 3, 6, 7, 15, 16, 19, 22, 23], "index1": [2, 13], "index2": [2, 13], "where": [2, 4, 7, 13, 14, 15, 16, 18, 19, 22, 23], "atom1": [2, 13], "atom2": [2, 13], "vertex": [2, 13], "add_user_def_bond": 2, "simpl": [2, 7, 15], "produc": [2, 7, 9, 13, 15, 16, 19, 22, 23], "those": [2, 8, 13, 15, 18, 19, 22], "atom3": 2, "atom4": 2, "third": [2, 22], "fourth": 2, "overwrit": [2, 8, 18, 19], "atol": [2, 9], "ltol": 2, "whose": [2, 14, 17, 22], "bohr": [2, 13], "degre": 2, "out": [2, 7, 15, 22, 23], "plane": [2, 7], "outp": 2, "linp": 2, "miscellan": 2, "quit": [2, 4], "send": [2, 15, 16], "qq": [2, 15], "version": [2, 7, 9, 11, 12, 14, 17, 18, 21, 22, 23], "basic": [2, 7, 14, 17, 19, 22, 23], "exit": 2, "begin": [2, 14], "testdir": [3, 8], "instanti": [3, 18, 23], "mark": [3, 14, 18, 19, 22], "parametr": 3, "arg": 3, "control_filenam": 3, "control_test": 3, "control_filepath": 3, "variabl": [3, 4, 13], "repetit": 3, "white": 3, "import": [3, 9, 13, 14, 15, 17, 19, 22, 23], "param": 3, "molecule_filenam": 3, "ch4": 3, "molecule_filepath": 3, "to_test": 3, "ref": [3, 19], "helper": [3, 8, 13, 16, 18, 19, 23], "treat": [3, 7, 22], "them": [3, 4, 7, 13, 14, 16, 18, 19, 21, 22, 23], "approx": 3, "intedef": 3, "assum": [3, 19, 22], "val": [3, 13], "through": [3, 4, 8, 13, 14, 15, 16, 22, 23], "assert": [3, 9, 22], "properli": [3, 4], "sort": [3, 7, 23], "structure_filepath": 3, "testdefinerunn": [4, 6], "assert_sendline_cal": [4, 6], "assert_sendline_has_cal": [4, 6], "test_add_atomic_coordinates_from_fil": [4, 6], "test_add_atomic_coordinates_from_file_cartesian": [4, 6], "test_copy_mo_files_ab_mo": [4, 6], "test_copy_mo_files_alpha_beta": [4, 6], "test_copy_mo_files_error": [4, 6], "test_copy_mo_files_mo": [4, 6], "test_define_basis_set": [4, 6], "test_define_core_potenti": [4, 6], "test_define_symmetri": [4, 6], "test_define_symmetry_error": [4, 6], "test_determine_symmetri": [4, 6], "test_determine_symmetry_ep": [4, 6], "test_dump_command_fil": [4, 6], "test_excited_state_menu_error_not_activ": [4, 6], "test_excited_state_menu_frequ": [4, 6], "test_excited_state_menu_irrep": [4, 6], "test_excited_state_menu_irrep_wrong_sym": [4, 6], "test_excited_state_menu_polli": [4, 6], "test_excited_state_menu_rpa": [4, 6], "test_excited_state_menu_urpa": [4, 6], "test_excited_state_menu_urpa_error": [4, 6], "test_excited_state_menu_wrong_ex_method": [4, 6], "test_excited_state_menu_wrong_menu": [4, 6], "test_existing_coordin": [4, 6], "test_existing_coordinates_cartesian": [4, 6], "test_existing_coordinates_error": [4, 6], "test_existing_coordinates_no_upd": [4, 6], "test_existing_coordinates_unsupport": [4, 6], "test_expect": [4, 6], "test_expect_raise_eof": [4, 6], "test_expect_raise_timeout": [4, 6], "test_extended_hueckel_theory_menu_charg": [4, 6], "test_extended_hueckel_theory_menu_default": [4, 6], "test_extended_hueckel_theory_menu_error": [4, 6], "test_extended_hueckel_theory_menu_nocharg": [4, 6], "test_extended_hueckel_theory_menu_unpair": [4, 6], "test_general_menu_ccsdt": [4, 6], "test_general_menu_dft": [4, 6], "test_general_menu_hf": [4, 6], "test_general_menu_wrong_method": [4, 6], "test_generate_internal_coordin": [4, 6], "test_generate_internal_coordinates_error": [4, 6], "test_geometry_menu_copymo": [4, 6], "test_geometry_menu_incompatibility_1": [4, 6], "test_geometry_menu_incompatibility_2": [4, 6], "test_geometry_menu_new_coords_1": [4, 6], "test_geometry_menu_new_coords_2": [4, 6], "test_geometry_menu_new_coords_3": [4, 6], "test_geometry_menu_new_coords_4": [4, 6], "test_geometry_menu_no_new_coord": [4, 6], "test_get_bin_path": [4, 6], "test_go_to_general_menu": [4, 6], "test_init": [4, 6], "test_initialize_control_1": [4, 6], "test_initialize_control_2": [4, 6], "test_initialize_control_incompat": [4, 6], "test_is_al": [4, 6], "test_postprocess": [4, 6], "test_quit_general_menu": [4, 6], "test_run_full_1": [4, 6], "test_run_full_2": [4, 6], "test_run_generate_mo_fil": [4, 6], "test_run_generate_mo_files_sym": [4, 6], "test_run_update_internal_coord": [4, 6], "test_run_update_internal_coords_error": [4, 6], "test_sendlin": [4, 6], "test_set_basi": [4, 6], "test_set_basis_error": [4, 6], "test_set_basis_error_2": [4, 6], "test_set_basis_error_3": [4, 6], "test_set_dft_options_no_dft": [4, 6], "test_set_dft_options_use_dft": [4, 6], "test_set_dft_options_wrong_xc": [4, 6], "test_set_ecp_error": [4, 6], "test_set_ecp_error_2": [4, 6], "test_set_ecp_error_3": [4, 6], "test_set_metr": [4, 6], "test_set_mo_from_control_fil": [4, 6], "test_set_mo_from_control_file_2": [4, 6], "test_set_mo_from_control_file_error": [4, 6], "test_set_mo_from_control_file_longpath": [4, 6], "test_set_mp2_opt": [4, 6], "test_set_mp2_options_f12": [4, 6], "test_set_mp2_options_geoopt": [4, 6], "test_set_mp2_options_mp2": [4, 6], "test_set_mp2_options_mp2_error": [4, 6], "test_set_ri_st": [4, 6], "test_set_ri_state_marij": [4, 6], "test_set_scf_opt": [4, 6], "test_skip_atomic_attribute_menu": [4, 6], "test_skip_atomic_attribute_menu_error": [4, 6], "test_skip_atomic_attribute_menu_intern": [4, 6], "test_switch_to_atomic_attribute_menu": [4, 6], "test_switch_to_atomic_attribute_menu_intern": [4, 6], "test_switch_to_atomic_attribute_menu_internal_error": [4, 6], "test_switch_to_molecular_orbital_definition_menu": [4, 6], "test_switch_to_scf_menu": [4, 6], "testexcept": [4, 6], "test_creat": [4, 6], "dr_data": [4, 6, 16], "test_get_define_templ": [4, 6], "test_validate_paramet": [4, 6], "pattern": [4, 15, 22], "go": [4, 15, 19], "timeout": [4, 15], "eof": 4, "problem": [4, 7, 9, 11, 15, 16, 18, 22], "incomplet": 4, "ir": [4, 7, 13, 15], "happen": [4, 14, 15, 16, 18, 19], "incompat": [4, 17, 19, 20, 22], "among": [4, 7, 14, 15, 19, 22], "previou": [4, 7, 12, 15, 18, 19, 22, 23], "60": [4, 15, 22], "log_filepath": 4, "log": [4, 12, 20, 21], "workdir": 4, "use_popen": 4, "pexpect": [4, 15], "commun": [4, 18, 22], "avoid": [4, 7, 14, 16, 19, 22], "side": [4, 14, 19, 23], "effect": [4, 14, 19, 22], "dure": [4, 13, 14, 18], "wait": 4, "search": [4, 7, 21], "environ": [4, 11, 19], "popen_spawn": 4, "popenspawn": 4, "popen": 4, "spawn": [4, 15, 16], "pty": 4, "define_command": 4, "dump": [4, 7], "command": [4, 6, 7, 9, 14, 15, 16, 19, 22], "behavior": [4, 14, 16, 19], "menu": [4, 15, 16, 22], "job": [4, 7, 9, 15], "reach": 4, "being": [4, 7, 14, 15, 19, 22], "normal": [4, 7, 22, 23], "abnorm": [4, 15], "regener": [4, 9, 12, 15, 19, 22], "must": [4, 22], "usemo": [4, 15], "taken": [4, 9, 19, 21], "scratch": 4, "extend": [4, 15, 22], "hueckel": [4, 15], "guess": [4, 15], "edit": 4, "least": [4, 6, 16, 18, 19, 22], "enabl": [4, 15, 21, 22], "enter": [4, 22], "sym": [4, 15], "desi": [4, 15], "notic": [4, 7, 12, 13, 19, 22], "disabl": [4, 15], "termin": [4, 15, 22], "similar": [4, 14, 18, 22, 23], "afterward": [4, 13, 15], "were": [4, 6, 7, 14, 19, 22], "successfulli": [4, 9], "unexpect": 4, "proper": [4, 7], "ha": [4, 7, 8, 12, 13, 14, 15, 16, 18, 19, 22, 23], "do": [4, 9, 16, 17, 18, 21, 22], "schema": [4, 15, 16], "excit": [4, 7, 15], "cerberu": [4, 15, 16], "yaml": [4, 15, 19], "nullabl": [4, 16], "basis_atom": [4, 15], "keysrul": 4, "valuesrul": 4, "use_cosmo": [4, 15], "coord_fil": [4, 15], "copymo": [4, 15], "boolean": [4, 7, 19], "desy_ep": [4, 15], "min": 4, "ecp_atom": 4, "ex_all_st": [4, 15], "default_sett": 4, "local": [4, 22], "setter": 4, "ex_method": [4, 15], "ex_multi": [4, 15], "ex_exopt": [4, 15], "ex_frequ": [4, 15], "ex_frequency_unit": [4, 15], "ex_irrep_st": [4, 15], "rpa": [4, 7, 15], "ci": [4, 15], "dynpol": [4, 15], "polli": [4, 15], "singlet": [4, 7, 15], "doublet": [4, 15], "triplet": [4, 15], "ex_mp2": [4, 15], "gridsiz": [4, 14, 15], "marij": [4, 7, 15], "oneof": 4, "rijk": [4, 15], "ri": [4, 7, 15, 23], "maxcor": [4, 15], "adc": [4, 15], "ccsd": [4, 15], "t": [4, 15], "ccsdt": [4, 15], "maxit": [4, 15], "hf": [4, 15], "mp2energi": [4, 15], "scfconv": [4, 14, 15], "max": [4, 7], "9": [4, 15, 22], "scfiterlimit": [4, 14, 15], "200": 4, "sym_ep": [4, 15], "unpaired_electron": [4, 15], "use_f12": [4, 15], "experiment": [4, 12, 13, 15, 16], "featur": [4, 11, 13, 15, 16, 17, 19, 20, 21, 22], "unit": [6, 13, 15, 16, 17, 18, 21], "mainli": [6, 13, 15, 17, 18, 19, 23], "mock": [6, 16, 19], "sendline_mock": 6, "sendlin": 6, "els": 6, "assert_has_cal": 6, "mo_dirpath": [6, 8], "request": [6, 7, 8, 11], "test_aoforcevibrationaldata": [7, 8], "test_scfiterationdata": [7, 8], "test_str": [7, 8], "test_properti": [7, 8], "cls_dict_path": [7, 8, 18], "generate_fil": [7, 8, 18], "testfunct": [7, 8], "test_convert_float": [7, 8], "test_convert_int": [7, 8], "test_convert_time_str": [7, 8], "testpars": [7, 8], "test_fail_all_done_check": [7, 8], "test_get_split_jobex_pars": [7, 8], "test_get_valu": [7, 8], "test_grep_lin": [7, 8], "parser_and_dict": [7, 8], "test_eiger_runn": [7, 8], "test_error_homo": [7, 8], "test_hol": [7, 8], "test_no_empty_st": [7, 8], "test_parsing_failur": [7, 8], "stdout": [7, 9, 19, 23], "reli": [7, 16, 17, 18, 19, 22, 23], "core_memory_dft": 7, "memory_per_atom": 7, "atoms_per_loop": 7, "construction_tim": 7, "numer": [7, 9, 14, 18, 19, 23], "aoforc": [7, 12, 19, 23], "Will": [7, 9], "numforc": 7, "remain": [7, 14, 22], "memori": [7, 15], "mb": 7, "need": [7, 14, 15, 16, 18, 19, 22, 23], "kb": 7, "loop": 7, "timing_descript": 7, "cpu_tim": 7, "wall_tim": 7, "cpu": 7, "wall": 7, "intens": 7, "m": [7, 13, 19], "dipole_mo": 7, "analysi": [7, 19, 23], "rotat": [7, 23], "constant": 7, "cm": 7, "optic": 7, "u": [7, 13, 18, 19], "3x3": 7, "dipol": [7, 23], "moment": [7, 15, 16, 23], "principl": [7, 17, 19], "axi": 7, "frequenc": [7, 15], "ddip_dq": 7, "intensities_perc": 7, "raman": 7, "eigenvector": [7, 19], "reduced_mass": 7, "vibrat": [7, 23], "mode": [7, 19, 22], "deriv": 7, "km": 7, "mol": 7, "percentag": 7, "num": 7, "reduc": [7, 14], "mass": [7, 23], "zpve": 7, "panda": 7, "datafram": 7, "neg": 7, "satisfi": [7, 22], "condit": [7, 18, 19, 22], "ab": 7, "zero": 7, "relev": [7, 14, 18, 19, 21, 22, 23], "basis_per_speci": 7, "aux_basis_per_speci": 7, "number_scf_basis_func": 7, "number_scf_aux_basis_func": 7, "most": [7, 13, 14, 15, 16, 17, 18, 19, 21, 22, 23], "escf": [7, 12, 18, 23], "speci": 7, "auxiliari": [7, 9], "auxialiari": 7, "info": 7, "screening_charg": 7, "element_radiu": 7, "area": [7, 22], "volum": [7, 22], "nsph": 7, "npspher": 7, "disex2": 7, "phsran": 7, "ampran": 7, "refind": 7, "fepsi": 7, "dielectr": 7, "total_energi": [7, 23], "total_energy_oc_corr": 7, "dielectric_energi": 7, "dielectric_energy_oc_corr": 7, "radiu": 7, "site": 7, "egrad": [7, 12, 23], "spherical_grids": 7, "gridpoint": 7, "exchang": [7, 19, 23], "correl": [7, 19, 23], "spheric": 7, "en_corr": 7, "paser": 7, "unrestricted_electron": 7, "dipole_vector": 7, "dipole_norm": 7, "quadrupole_tensor": 7, "quadrupole_trac": 7, "quadrupole_anisotropi": 7, "electrostat": [7, 23], "quadrupol": [7, 23], "unrestrict": 7, "compon": [7, 19, 22], "tensor": 7, "trace": 7, "anisotropi": 7, "calc_typ": 7, "iter": [7, 15, 23], "residuum_convergence_criterium": 7, "n_occupied_orbit": 7, "orbital_character": 7, "max_davidson_it": 7, "machine_precis": 7, "max_core_mem": 7, "max_cao_basis_vector": 7, "max_treated_vector": 7, "irrep_data": 7, "gs_tot_en": 7, "residuum": 7, "converg": [7, 12, 23], "criterium": 7, "how": [7, 16, 18, 19, 21, 22, 23], "davidson": 7, "machin": [7, 19, 22], "precis": [7, 13, 22], "cao": 7, "simultan": [7, 22], "degeneraci": 7, "dimens": 7, "ground": 7, "detail": [7, 17, 18, 19, 21, 22, 23], "sublist": 7, "convern": 7, "dealt": 7, "inner": 7, "euclidean": 7, "residu": 7, "msg": 7, "func_typ": 7, "xcfun": 7, "relax": [7, 12, 23], "concern": [7, 16, 17, 18, 22], "xc": 7, "gga": 7, "lda": 7, "center_of_mass": 7, "center_of_charg": 7, "integral_neglect_threshold": 7, "thize": [7, 14], "thime": [7, 14], "gradien": 7, "neglect": 7, "storag": [7, 22], "energy_onli": 7, "lattice_param": 7, "shortest_interatomic_dist": 7, "direct_space_vector": 7, "reciprocal_space_vector": 7, "shortest": 7, "interatom": 7, "align": 7, "x": [7, 9, 19, 20, 21], "xy": 7, "reciproc": 7, "pi": 7, "v": 7, "a2": 7, "a3": 7, "b3": 7, "crystallograph": 7, "recov": 7, "energy_chang": 7, "rms_displ": 7, "max_displ": 7, "rms_grad": 7, "max_grad": 7, "final": [7, 14, 17, 18, 22, 23], "what": [7, 18, 19, 22], "statpt": [7, 12, 18, 23], "thr": 7, "conv": 7, "achiev": [7, 19, 22], "rm": 7, "displac": 7, "thr_int_coord": 7, "criterion": [7, 22], "norm_cartesian": 7, "norm_intern": 7, "max_intern": 7, "stapt": [7, 23], "take": [7, 13, 15, 16, 18, 19, 22, 23], "account": 7, "ricor": 7, "rij_memori": 7, "rik": 7, "ridft": [7, 12, 15, 18, 19, 23], "approxim": [7, 22], "rij": 7, "host": [7, 22], "start_tim": 7, "end_tim": 7, "wa": [7, 15, 22, 23], "datetim": 7, "dii": [7, 23], "diis_error_vect": 7, "conv_tot_en": 7, "conv_one_e_en": 7, "virtual_orbital_shift_on": 7, "virtual_orbital_shift_limit": 7, "restart_fil": 7, "oper": [7, 14, 16, 22, 23], "switch": [7, 19], "increment": [7, 20], "virtual": [7, 23], "shift": [7, 23], "character": [7, 22], "restart": 7, "kinetic_energi": 7, "potential_energi": 7, "virial_theorem": [7, 23], "wavefunction_norm": 7, "coulomb_energi": 7, "xc_energi": 7, "ts_energi": 7, "free_energi": 7, "sigma0_energi": 7, "virial": 7, "theorem": 7, "wavefunct": 7, "coulomb": 7, "entrop": 7, "free": [7, 22], "sigma0": 7, "first_index": 7, "damp": 7, "keep": [7, 14, 16, 19, 22], "wast": [7, 18], "higher": [7, 12, 21, 23], "tot_en": 7, "osc_str": 7, "rot_str": 7, "dominant_contribut": 7, "moments_column": 7, "cannot": [7, 14, 15, 19, 22], "oscil": 7, "strength": 7, "rotatori": 7, "domin": 7, "occ_orb": 7, "virt_orb": 7, "coeff": 7, "coeffici": 7, "electr": 7, "magnet": 7, "column": 7, "electric_dipol": 7, "magnetic_dipol": 7, "electric_quadrupol": 7, "initial_elec_temp": 7, "final_elec_temp": 7, "annealing_factor": 7, "annealing_homo_lumo_gap_limit": 7, "smearing_de_limit": 7, "smear": [7, 23], "temperatur": 7, "anneal": 7, "de": 7, "max_trust_radiu": 7, "min_trust_radiu": 7, "init_trust_radiu": 7, "min_grad_norm_for_gdii": 7, "prev_steps_for_gdii": 7, "hessian_update_method": 7, "thr_energy_chang": 7, "thr_max_displ": 7, "thr_max_grad": 7, "thr_rms_displ": 7, "thr_rms_grad": 7, "use_default": 7, "final_step_radiu": 7, "trust": 7, "minimum": [7, 15], "gdii": 7, "hessian": 7, "n_rep": 7, "rep": 7, "part": [7, 12, 14, 18, 19, 22], "might": [7, 12, 13, 14, 15, 16, 18, 19, 21, 22], "build": [7, 18, 23], "numerical_integr": 7, "aforc": 7, "work": [7, 8, 12, 13, 14, 15, 18, 19, 22], "nativ": 7, "ex_stat": 7, "minim": 7, "rel": [7, 9, 14, 16, 18], "prece": 7, "rdgrad": [7, 23], "jobex": [7, 12, 23], "mpgrad": [7, 12, 23], "ricc2": [7, 12, 15, 23], "pnoccsd": [7, 23], "pno": 7, "program": [7, 9, 12, 17, 22], "yet": [7, 19], "dscf": [7, 12, 15, 19, 23], "main": [7, 16, 18, 19, 21], "portion": [7, 16, 18, 19, 22], "aim": [7, 15, 19, 22], "reusabl": 7, "possibl": [7, 14, 15, 16, 17, 18, 19, 22], "across": [7, 19, 22], "quantiti": [7, 21, 23], "access": [7, 15, 16, 18, 19, 20, 21, 22, 23], "lazi": [7, 18, 23], "section": [7, 15, 16, 17, 18, 19, 22, 23], "crash": 7, "lead": [7, 14, 15, 17, 19], "wrong": 7, "heavili": [7, 16], "regex": 7, "isotop": 7, "activ": [7, 15, 22], "subdictionari": 7, "xf": 7, "functional_msg": 7, "functional_nam": 7, "functional_typ": 7, "chosen": [7, 18], "exopt": [7, 15], "check_all_don": 7, "exec_en": 7, "parser_en": 7, "exec_grad": 7, "parser_grad": 7, "exec_relax": 7, "parser_relax": 7, "text": [7, 18, 21, 23], "find": [7, 22], "th": [7, 15], "callabl": 7, "better": [7, 19], "instead": [7, 9, 13, 14, 16, 18, 19, 22, 23], "nline": 7, "similarli": [7, 23], "grep": 7, "plu": [7, 15, 22], "tm_version": [7, 8], "tm_build": 7, "tm_lattice_param": 7, "pre": [7, 12], "print": [7, 9, 19, 23], "alloc": 7, "exponenti": 7, "11": [7, 21, 22], "23": 7, "123e": 7, "01": [7, 19], "123d": 7, "compos": [7, 23], "asterisk": 7, "fortran": 7, "dai": [7, 22], "hour": 7, "12": [7, 22], "minut": 7, "55": 7, "nelec": 7, "eiger": [7, 23], "ascend": [7, 23], "inddic": 7, "1e": [7, 9], "06": 7, "anot": 7, "data_path": 7, "compat": [7, 18, 19, 21], "mutablesequ": [7, 23], "sequenc": [7, 16], "increas": [7, 14, 15, 21], "eigenst": [7, 23], "subset": [7, 16], "filter": 7, "shortcut": [7, 14], "hole": 7, "allow_fract": 7, "only_occupi": 7, "reorder_irrep_index": 7, "lowest": [7, 23], "fill": [7, 13], "ones": [7, 15, 18, 19], "procedur": [7, 16, 22, 23], "becaus": [7, 18, 22], "equal": [7, 9, 17], "self": [7, 11, 16], "ly": 7, "dg_string": 7, "py": [8, 17, 19, 20], "repeat": [8, 18, 19, 23], "verifi": [8, 14, 15, 19], "implicitli": 8, "target": [8, 16, 18, 19], "extens": [8, 15, 22], "files_list": [8, 18], "pytest": [8, 9, 19], "fixtur": [8, 16, 18, 19], "These": [8, 13, 14, 15, 19, 22, 23], "ensur": [8, 16, 22], "parser_method": [8, 9, 18], "infrastructur": [9, 19], "configur": [9, 19, 20], "10": [9, 15, 22], "dryrun_itest": [9, 19], "baseexcept": 9, "itest": [9, 19], "obj": 9, "test_if_subclass": 9, "tri": 9, "By": [9, 15, 19, 22], "deactiv": 9, "desir": [9, 16], "rtol": 9, "07": 9, "ignored_valu": 9, "err_msg": 9, "verbos": 9, "numpi": 9, "assert_equ": 9, "16": [9, 21, 22], "assertionerror": 9, "requir": [9, 12, 13, 14, 15, 16, 17, 18, 19, 22], "scalar": 9, "arrai": 9, "almost": 9, "conflict": 9, "assert_allclos": 9, "absolut": [9, 15, 19, 22], "still": [9, 13, 14, 18, 19], "though": [9, 15, 18, 19, 22, 23], "failur": [9, 15, 16, 19, 22], "current_level": 9, "nest": 9, "test_definit": 9, "log_fpath": 9, "outdir": 9, "logfil": 9, "struc": 9, "file_nam": 9, "_privat": 9, "expos": 9, "public": [9, 22], "isnan": 9, "typeerror": 9, "rubric": 9, "ufunc": 9, "sometim": 9, "notimplementedtyp": 9, "wrapper": 9, "make": [9, 11, 14, 16, 17, 18, 19, 20, 22], "sure": [9, 14, 16, 22], "onc": [9, 18, 19], "solv": [9, 15], "level": [9, 16, 18, 19, 23], "instal": [9, 19, 22], "define_opt": 9, "coord_filenam": 9, "control_reference_filenam": 9, "file_class": 9, "datagroups_opt": 9, "success": [9, 19], "datagroup_nam": 9, "datagroup_valu": 9, "delet": [9, 19], "changedir": 9, "context": [9, 18, 19, 22], "manag": [9, 18, 19, 21], "temporari": [9, 19], "tempfil": 9, "mkdtemp": 9, "cd": 9, "monti": [9, 18, 21, 23], "o": [9, 11, 13, 19], "preserv": [9, 22], "yield": 9, "touch": 9, "turbomoleio": [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 22, 23], "you": [11, 13, 14, 15, 16, 18, 19, 20, 22, 23], "patch": [11, 20], "issu": 11, "github": [11, 12], "http": [11, 22], "com": 11, "matgenix": 11, "pleas": [11, 22], "much": [11, 14, 15, 16, 19, 23], "small": [11, 15, 18, 19], "snippet": 11, "reproduc": [11, 14, 19], "your": [11, 15, 16, 18, 19, 22, 23], "python": [11, 12, 13, 14, 17, 19, 20, 21], "document": [12, 16, 17, 19, 20, 22, 23], "commit": [12, 22], "hook": 12, "lint": 12, "workflow": [12, 15, 21], "adapt": [12, 22], "progress": [12, 13], "api": [12, 13, 14, 17, 20, 23], "prior": [12, 13, 19, 22], "preliminari": 12, "rimp2": 12, "reorgan": 12, "script": [12, 14, 19, 22, 23], "offici": [12, 22], "gpl": [12, 22], "v3": 12, "licens": [12, 21], "simul": 13, "howev": [13, 14, 15, 16, 18, 22, 23], "further": [13, 22, 23], "reason": [13, 14, 15, 19, 22], "advantag": [13, 15, 16, 17, 18], "convers": 13, "limit": [13, 14, 15, 19, 22], "capabl": 13, "isol": [13, 18], "see": [13, 15, 16, 17, 19, 22, 23], "below": [13, 14, 18, 19, 22, 23], "exploit": 13, "simplest": [13, 15], "translat": 13, "look": [13, 14, 19, 23], "00000000000000": 13, "17616323936717": 13, "03717448857876": 13, "35232647873438": 13, "complic": [13, 16], "commonli": 13, "we": [13, 14, 15, 16, 18, 19, 22, 23], "stress": 13, "again": [13, 18, 23], "oppos": 13, "Their": [13, 19], "bring": [13, 16], "few": [13, 14, 16, 17, 23], "let": [13, 18], "never": [13, 14], "nor": [13, 22], "As": [13, 14, 15, 18, 19], "subsequ": 14, "lack": 14, "unambigu": 14, "distinct": 14, "superflu": 14, "particular": [14, 15, 16, 18, 19, 20, 22, 23], "appar": 14, "strictli": [14, 17], "mandatori": 14, "under": [14, 18, 19, 22], "offer": [14, 22, 23], "view": [14, 18, 22], "inspir": 14, "distribut": [14, 16, 19, 22], "simplic": 14, "ambigu": 14, "encount": [14, 15], "ask": [14, 22], "intent": [14, 22], "p": [14, 15], "m3": 14, "interest": [14, 22], "dg": 14, "kind": [14, 15, 18, 19, 22, 23], "uniform": 14, "next": [14, 19, 22], "join": 14, "want": [14, 15, 16, 18, 21, 22], "c1": 14, "100": 14, "abov": [14, 15, 18, 19, 22, 23], "lastli": [14, 18, 19, 23], "whole": [14, 15, 18, 19, 22], "connect": [14, 19, 21, 22], "pbe": 14, "design": [14, 18, 19, 21, 22, 23], "besid": 14, "frequent": 14, "over": [14, 19], "best": [14, 16, 19, 22], "attent": 14, "organ": [14, 18, 19, 22, 23], "analys": 14, "divid": [14, 19], "mention": [14, 15, 19], "explicitli": [14, 15, 22], "crucial": 15, "challeng": 15, "autom": 15, "child": 15, "applic": [15, 19, 22], "respond": 15, "complex": 15, "speed": 15, "navig": 15, "histori": [15, 16], "submit": 15, "sent_command": [15, 16], "repli": [15, 16], "brought": 15, "situat": 15, "foreseen": 15, "realli": [15, 19], "low": 15, "too": [15, 22], "120": 15, "good": [15, 16, 18, 19, 23], "compromis": 15, "previous": [15, 19], "interrupt": 15, "help": [15, 17, 19], "predefin": 15, "prepar": [15, 19], "dp": 15, "dr": 15, "prepapar": 15, "Of": [15, 22], "cours": [15, 19, 22], "tune": [15, 19], "proceed": 15, "retriev": 15, "cover": [15, 19, 22], "everi": [15, 22], "scenario": 15, "focus": [15, 23], "keywork": 15, "overrid": [15, 19], "forc": [15, 22], "sy": 15, "distinguish": [15, 22], "ciss": 15, "rpat": 15, "cist": 15, "outcom": [15, 19], "eht": 15, "uht": 15, "larger": [15, 22], "num_exc_st": 15, "multiplicity_int": 15, "exci": 15, "nexc": 15, "polaris": 15, "589": 15, "nm": 15, "enforc": [15, 17, 22], "treatment": 15, "geoopt": 15, "def2": 15, "sv": 15, "specic": 15, "unpair": 15, "f12": 15, "ccsdapprox": 15, "rir12": 15, "accuraci": 15, "rang": 15, "cosmo_out": 15, "paramat": 15, "At": [15, 23], "prevent": [15, 19, 22], "typo": 15, "altern": [15, 16, 22], "define_parameters_valid": 15, "Being": [15, 16], "bit": 15, "care": [15, 18, 19, 21], "certain": [15, 22], "probabl": [15, 16, 18, 23], "guid": [16, 17, 18, 19, 23], "briefli": 16, "discuss": [16, 18, 19], "aspect": [16, 17], "rememb": [16, 18], "trivial": [16, 19], "prone": 16, "littl": [16, 19], "wish": [16, 19, 22, 23], "explor": 16, "plan": [16, 19], "protect": [16, 22], "_": 16, "right": [16, 22], "turn": 16, "introduc": [16, 18, 19], "carefulli": [16, 18, 19, 21], "There": 16, "mind": [16, 18], "advanc": [16, 21], "_sendlin": 16, "_expect": 16, "track": 16, "receiv": [16, 22], "known": 16, "intercept": 16, "signal": 16, "disrupt": 16, "flow": [16, 22], "run_": 16, "share": [16, 18, 22], "idea": [16, 22, 23], "mimic": 16, "reus": 16, "develop": [16, 17, 18, 19, 22, 23], "natur": [16, 18, 21, 22], "variou": [16, 23], "explan": [16, 17, 18], "hoc": 16, "interconnected": 16, "introduct": [16, 19], "succe": 16, "against": [16, 22], "real": 16, "welcom": [16, 22], "improv": 16, "power": [16, 22], "place": [16, 19, 22, 23], "learn": 16, "dependeci": 16, "With": 17, "nonetheless": 17, "compli": [17, 22], "guidelin": 17, "greater": 17, "8": [17, 21, 22], "understand": [17, 19, 23], "orient": 17, "inherit": 17, "often": [17, 19], "pep": 17, "style": 17, "although": [17, 22, 23], "deviat": 17, "advis": [17, 21, 22], "stick": [17, 19], "essenti": [17, 19, 22], "futur": [17, 22], "googl": 17, "docstr": 17, "docs_rst": 17, "typeset": 17, "restructuredtext": 17, "html": [17, 19, 22], "sphinx": 17, "doc": [17, 20], "rst": 17, "invok": 17, "task": 17, "remark": 17, "strongli": 17, "discourag": [17, 19], "backward": [17, 18, 19, 21], "clear": [17, 22], "clearli": [17, 22], "highlight": 17, "possibli": [17, 19, 23], "agre": [17, 18, 22], "maintain": [17, 22], "explain": [18, 19, 22], "depth": 18, "inspect": [18, 19], "meant": 18, "lazy_properti": 18, "mix": 18, "temporarili": 18, "dispos": 18, "narrow": 18, "down": [18, 21], "abl": 18, "togeth": [18, 23], "On": 18, "hand": 18, "prefer": [18, 22, 23], "approach": [18, 23], "quickli": 18, "he": 18, "rest": [18, 23], "impact": 18, "proce": [18, 19], "bottom": 18, "express": [18, 22, 23], "focu": [18, 23], "analyz": [18, 19], "consider": 18, "appear": 18, "disappear": 18, "latter": 18, "newli": 18, "__init__": [18, 20], "deseri": 18, "old": [18, 19], "anymor": 18, "upon": 18, "manner": [18, 20, 22, 23], "address": [18, 22], "encapsul": 18, "recommend": 18, "hold": 18, "exec_to_out_obj": 18, "decid": [18, 22], "mayb": 18, "extrem": [18, 19], "becom": 18, "bug": [18, 19, 20, 21], "partial": 18, "loos": 18, "warn": 18, "deal": [18, 23], "process": 19, "meet": [19, 22], "behav": 19, "exhaust": 19, "beyond": [19, 22], "scope": [19, 22], "somewhat": 19, "arbitrari": 19, "own": [19, 22], "reintroduc": 19, "later": [19, 22], "wide": [19, 22], "custom": [19, 22], "coverag": [19, 22], "cov": 19, "sum": 19, "easiest": 19, "pip": 19, "mongomock": 19, "runtest": 19, "sh": 19, "project": 19, "report": [19, 21], "coverage_html": 19, "coveragerc_unit": 19, "coveragerc_integr": 19, "subfold": 19, "creation": 19, "toward": 19, "high": 19, "rate": 19, "alon": [19, 23], "99": 19, "tm_v7": 19, "additionn": 19, "necessari": [19, 22], "integrations_test": 19, "exclud": [19, 22], "outright": 19, "obvious": 19, "meaningless": 19, "date": [19, 22], "elaps": 19, "chemic": 19, "slightli": [19, 20], "impract": 19, "meaning": 19, "acoust": 19, "vari": 19, "inde": 19, "cumbersom": 19, "inevit": 19, "underli": 19, "renam": 19, "altogeth": 19, "now": 19, "releas": [19, 20, 21, 22], "light": 19, "looser": 19, "tolear": 19, "wise": 19, "test_dscf": 19, "test_run_dscf_hf": 19, "trigger": 19, "imposs": 19, "wrongli": 19, "systemat": [19, 22, 23], "short": [19, 22], "enough": [19, 23], "comput": [19, 22], "resourc": 19, "gain": 19, "89": 19, "test_": 19, "discov": 19, "experi": 19, "unittest": 19, "testcas": 19, "onlin": 19, "practic": [19, 22], "whenev": 19, "tmpdir": 19, "why": [19, 22], "conftest": 19, "eas": [19, 20], "itself": [19, 22], "benzen": 19, "benzene_myxc": 19, "hereaft": [19, 22], "testgen": 19, "testexec": 19, "testnam": 19, "excerpt": 19, "tree": 19, "aceton_ful": 19, "h2_numforc": 19, "aceton_dftd3_tzvp": 19, "h2o_std": 19, "h2o_uhf": 19, "nh3_cosmo_fermi": 19, "nh3_dftd1": 19, "tests_config": 19, "generate_output_fil": 19, "generate_control": 19, "tm_vx": 19, "y": [19, 20], "z": 19, "v7": 19, "thing": [19, 22], "action": [19, 22], "fulli": 19, "due": 19, "critic": 19, "measur": [19, 22], "dev_script": 19, "parsing_update_differ": 19, "dry": 19, "minor": [19, 20], "occur": [19, 22], "fpath": 19, "aris": [19, 22], "newest": 19, "older": [19, 20], "safe": 19, "transit": 19, "facilit": 19, "know": [19, 22], "adopt": [20, 22], "semant": 20, "major": [20, 22], "__version__": 20, "conf": 20, "latest": 20, "librari": [21, 22], "summar": 21, "mongodb": 21, "databas": 21, "firework": 21, "quick": 21, "overal": 21, "appendix": 21, "runner": 21, "suit": 21, "changelog": 21, "feb": 21, "24": 21, "2022": 21, "15": [21, 22], "sep": 21, "20": [21, 22], "2021": 21, "mar": 21, "page": 21, "softwar": 22, "redistribut": 22, "term": 22, "gnu": 22, "publish": 22, "foundat": 22, "hope": 22, "warranti": 22, "impli": 22, "merchant": 22, "fit": 22, "FOR": 22, "29": 22, "june": 22, "2007": 22, "copyright": 22, "inc": 22, "fsf": 22, "org": 22, "everyon": 22, "permit": 22, "verbatim": 22, "preambl": 22, "copyleft": 22, "awai": 22, "freedom": 22, "contrast": 22, "our": 22, "author": 22, "speak": 22, "price": 22, "piec": [22, 23], "deni": 22, "surrend": 22, "therefor": 22, "grati": 22, "fee": 22, "recipi": 22, "And": 22, "legal": 22, "permiss": 22, "sake": 22, "erron": 22, "devic": 22, "manufactur": 22, "fundament": 22, "abus": 22, "product": 22, "individu": 22, "unaccept": 22, "prohibit": 22, "substanti": 22, "domain": 22, "stand": 22, "readi": 22, "provis": 22, "threaten": 22, "constantli": 22, "patent": 22, "restrict": 22, "special": 22, "danger": 22, "proprietari": 22, "assur": 22, "render": 22, "AND": 22, "law": 22, "semiconductor": 22, "mask": 22, "license": 22, "earlier": 22, "unmodifi": 22, "propag": 22, "secondarili": 22, "liabl": 22, "infring": 22, "privat": 22, "countri": 22, "convei": 22, "parti": 22, "mere": 22, "network": 22, "transfer": 22, "extent": 22, "conveni": 22, "promin": 22, "visibl": 22, "tell": 22, "item": 22, "recogn": 22, "bodi": 22, "languag": 22, "serv": 22, "kernel": 22, "window": 22, "compil": 22, "interpret": 22, "link": [22, 23], "subprogram": 22, "intim": 22, "grant": 22, "irrevoc": 22, "met": 22, "affirm": 22, "unlimit": 22, "constitut": 22, "acknowledg": 22, "fair": 22, "long": 22, "sole": 22, "exclus": 22, "facil": 22, "materi": 22, "behalf": 22, "outsid": 22, "relationship": 22, "circumst": 22, "sublicens": 22, "anti": 22, "circumvent": 22, "No": 22, "shall": 22, "deem": 22, "technolog": 22, "fulfil": 22, "oblig": 22, "articl": 22, "wipo": 22, "treati": 22, "decemb": 22, "1996": 22, "waiv": 22, "forbid": 22, "exercis": 22, "disclaim": 22, "medium": 22, "conspicu": 22, "intact": 22, "absenc": 22, "along": [22, 23], "carri": 22, "anyon": 22, "who": [22, 23], "possess": 22, "regardless": 22, "invalid": 22, "independ": 22, "aggreg": 22, "inclus": 22, "embodi": 22, "accompani": 22, "durabl": 22, "customarili": 22, "interchang": 22, "year": 22, "spare": 22, "cost": 22, "server": 22, "occasion": 22, "noncommerci": 22, "subsect": [22, 23], "6b": 22, "sai": 22, "peer": 22, "transmiss": 22, "6d": 22, "consum": 22, "tangibl": 22, "person": 22, "famili": 22, "household": 22, "sold": 22, "incorpor": 22, "dwell": 22, "doubt": 22, "resolv": 22, "favor": 22, "commerci": 22, "industri": 22, "unless": 22, "signific": 22, "suffic": 22, "continu": 22, "interf": 22, "transact": 22, "perpetu": 22, "But": 22, "neither": 22, "retain": 22, "abil": 22, "rom": 22, "servic": 22, "advers": 22, "affect": 22, "violat": 22, "rule": 22, "protocol": 22, "publicli": 22, "password": 22, "unpack": 22, "supplement": 22, "govern": 22, "regard": 22, "notwithstand": 22, "holder": 22, "liabil": 22, "misrepresent": 22, "licensor": 22, "declin": 22, "trademark": 22, "trade": 22, "indemnif": 22, "contractu": 22, "assumpt": 22, "impos": 22, "relicens": 22, "surviv": 22, "statement": 22, "expressli": 22, "void": 22, "paragraph": 22, "ceas": 22, "reinstat": 22, "provision": 22, "until": 22, "perman": 22, "notifi": 22, "cessat": 22, "moreov": 22, "cure": 22, "30": 22, "receipt": 22, "qualifi": 22, "Not": 22, "ancillari": 22, "consequ": 22, "likewis": 22, "noth": 22, "downstream": 22, "subject": 22, "complianc": 22, "entiti": 22, "asset": 22, "subdivid": 22, "merg": 22, "whatev": 22, "predecessor": 22, "had": 22, "effort": 22, "royalti": 22, "litig": 22, "cross": 22, "claim": 22, "counterclaim": 22, "lawsuit": 22, "alleg": 22, "sell": 22, "sale": 22, "contributor": 22, "acquir": 22, "worldwid": 22, "agreement": 22, "denomin": 22, "coven": 22, "sue": 22, "knowingli": 22, "readili": 22, "arrang": 22, "depriv": 22, "yourself": 22, "benefit": 22, "knowledg": 22, "believ": 22, "pursuant": 22, "procur": 22, "convey": 22, "discriminatori": 22, "busi": 22, "payment": 22, "primarili": 22, "28": 22, "march": 22, "constru": 22, "defens": 22, "court": 22, "contradict": 22, "excus": 22, "pertin": 22, "whom": 22, "refrain": 22, "13": 22, "affero": 22, "14": 22, "revis": 22, "Such": 22, "spirit": 22, "choos": 22, "ever": 22, "proxi": 22, "THERE": 22, "NO": 22, "THE": 22, "TO": 22, "BY": 22, "IN": 22, "OR": 22, "AS": 22, "OF": 22, "BUT": 22, "NOT": 22, "risk": 22, "qualiti": 22, "WITH": 22, "prove": 22, "defect": 22, "repair": 22, "event": 22, "WILL": 22, "BE": 22, "damag": 22, "incident": 22, "consequenti": 22, "inabl": 22, "loss": 22, "BEING": 22, "inaccur": 22, "sustain": 22, "IF": 22, "SUCH": 22, "17": 22, "review": 22, "waiver": 22, "civil": 22, "greatest": 22, "attach": 22, "safest": 22, "pointer": 22, "brief": 22, "www": 22, "contact": 22, "paper": 22, "mail": 22, "hypothet": 22, "gui": 22, "box": 22, "employ": 22, "programm": 22, "school": 22, "subroutin": 22, "lesser": 22, "lgpl": 22, "name_of_the_execut": 23, "dig": 23, "decomposit": 23, "energy_data": 23, "0x7fb15f425eb8": 23, "49586861429": 23, "42945116692": 23, "gather": 23, "scf_output": 23, "0x7fd37d6282b0": 23, "tailor": 23, "sens": 23, "punctual": 23, "mostli": 23, "top": 23, "resolut": 23, "ident": 23, "criteria": 23, "cc2": 23, "uhfmo_alpha": 23, "uhfmo_beta": 23}, "objects": {"": [[1, 0, 0, "-", "turbomoleio"]], "turbomoleio": [[2, 0, 0, "-", "core"], [4, 0, 0, "-", "input"], [7, 0, 0, "-", "output"], [9, 0, 0, "-", "testfiles"]], "turbomoleio.core": [[2, 0, 0, "-", "base"], [2, 0, 0, "-", "control"], [2, 0, 0, "-", "datagroups"], [2, 0, 0, "-", "molecule"], [2, 0, 0, "-", "periodic"], [2, 0, 0, "-", "symmetry"], [3, 0, 0, "-", "tests"], [2, 0, 0, "-", "utils"]], "turbomoleio.core.base": [[2, 1, 1, "", "BaseSystem"], [2, 3, 1, "", "get_coord_lines"], [2, 3, 1, "", "get_mol_and_indices_frozen"]], "turbomoleio.core.base.BaseSystem": [[2, 2, 1, "", "coord_lines"], [2, 2, 1, "", "to_coord_file"], [2, 2, 1, "", "to_coord_string"], [2, 2, 1, "", "to_file"]], "turbomoleio.core.control": [[2, 1, 1, "", "Control"], [2, 1, 1, "", "Defaults"], [2, 1, 1, "", "Energy"], [2, 1, 1, "", "Gradient"], [2, 1, 1, "", "Shells"], [2, 3, 1, "", "adg"], [2, 3, 1, "", "cdg"], [2, 3, 1, "", "cpc"], [2, 3, 1, "", "kdg"], [2, 3, 1, "", "mdgo"], [2, 3, 1, "", "sdg"], [2, 3, 1, "", "sdgo"]], "turbomoleio.core.control.Control": [[2, 2, 1, "", "add_cosmo"], [2, 2, 1, "", "cpc"], [2, 4, 1, "", "energy"], [2, 2, 1, "", "from_file"], [2, 2, 1, "", "from_metric"], [2, 2, 1, "", "get_charge"], [2, 2, 1, "", "get_shells"], [2, 2, 1, "", "get_subfiles_list"], [2, 4, 1, "", "gradient"], [2, 4, 1, "", "is_uhf"], [2, 2, 1, "", "remove_last_energy"], [2, 2, 1, "", "remove_last_gradient"], [2, 2, 1, "", "set_disp"], [2, 2, 1, "", "to_file"]], "turbomoleio.core.control.Defaults": [[2, 5, 1, "", "METRIC"]], "turbomoleio.core.control.Energy": [[2, 4, 1, "", "delta_e"], [2, 2, 1, "", "from_file"], [2, 2, 1, "", "from_string"], [2, 4, 1, "", "n_steps"], [2, 2, 1, "", "plot"]], "turbomoleio.core.control.Gradient": [[2, 2, 1, "", "from_file"], [2, 2, 1, "", "from_string"], [2, 4, 1, "", "last_grad_max"], [2, 4, 1, "", "last_grad_norm"], [2, 4, 1, "", "max_gradients"], [2, 4, 1, "", "n_steps"], [2, 4, 1, "", "norms"], [2, 2, 1, "", "plot"]], "turbomoleio.core.control.Shells": [[2, 2, 1, "", "as_dict"], [2, 2, 1, "", "from_dict"], [2, 2, 1, "", "from_file"], [2, 2, 1, "", "from_string"], [2, 4, 1, "", "irreps"], [2, 2, 1, "", "to_datagroup"], [2, 4, 1, "", "total_electrons"]], "turbomoleio.core.datagroups": [[2, 1, 1, "", "DataGroups"], [2, 3, 1, "", "cleanup_string"], [2, 3, 1, "", "compare_datagroup_string"], [2, 3, 1, "", "remove_comments"], [2, 3, 1, "", "remove_dg_from_list"], [2, 3, 1, "", "split_string_to_dg_list"]], "turbomoleio.core.datagroups.DataGroups": [[2, 2, 1, "", "add_data_group"], [2, 2, 1, "", "adg"], [2, 2, 1, "", "as_dict"], [2, 2, 1, "", "cdg"], [2, 2, 1, "", "change_data_group"], [2, 2, 1, "", "compare"], [2, 2, 1, "", "empty"], [2, 2, 1, "", "from_dict"], [2, 2, 1, "", "from_file"], [2, 2, 1, "", "kdg"], [2, 2, 1, "", "kill_data_group"], [2, 2, 1, "", "mdgo"], [2, 2, 1, "", "modify_data_group_options"], [2, 4, 1, "", "ndg"], [2, 4, 1, "", "number_of_data_groups"], [2, 2, 1, "", "sdg"], [2, 2, 1, "", "sdgo"], [2, 2, 1, "", "show_data_group"], [2, 2, 1, "", "show_data_group_option"], [2, 2, 1, "", "show_subfile_fname"], [2, 2, 1, "", "to_file"]], "turbomoleio.core.molecule": [[2, 1, 1, "", "BondAngle"], [2, 1, 1, "", "CollinearBendingAngle"], [2, 1, 1, "", "DihedralAngle"], [2, 1, 1, "", "Distance"], [2, 1, 1, "", "InternalDefinition"], [2, 1, 1, "", "InverseDistance"], [2, 1, 1, "", "MoleculeSystem"], [2, 1, 1, "", "OutOfPlaneAngle"], [2, 1, 1, "", "PerpendicularBendingAngle"]], "turbomoleio.core.molecule.BondAngle": [[2, 2, 1, "", "compute_value"], [2, 5, 1, "", "coord_str"], [2, 5, 1, "", "coord_type"], [2, 5, 1, "", "n_atoms"]], "turbomoleio.core.molecule.CollinearBendingAngle": [[2, 2, 1, "", "compute_value"], [2, 5, 1, "", "coord_str"], [2, 5, 1, "", "coord_type"], [2, 5, 1, "", "n_atoms"]], "turbomoleio.core.molecule.DihedralAngle": [[2, 2, 1, "", "compute_value"], [2, 5, 1, "", "coord_str"], [2, 5, 1, "", "coord_type"], [2, 5, 1, "", "n_atoms"]], "turbomoleio.core.molecule.Distance": [[2, 2, 1, "", "compute_value"], [2, 5, 1, "", "coord_str"], [2, 5, 1, "", "coord_type"], [2, 5, 1, "", "n_atoms"]], "turbomoleio.core.molecule.InternalDefinition": [[2, 2, 1, "", "compute_value"], [2, 5, 1, "", "coord_str"], [2, 5, 1, "", "coord_type"], [2, 2, 1, "", "from_string"], [2, 2, 1, "", "get_subclass_from_str"], [2, 2, 1, "", "is_valid"], [2, 5, 1, "", "n_atoms"], [2, 2, 1, "", "to_string"]], "turbomoleio.core.molecule.InverseDistance": [[2, 2, 1, "", "compute_value"], [2, 5, 1, "", "coord_str"], [2, 5, 1, "", "coord_type"], [2, 5, 1, "", "n_atoms"]], "turbomoleio.core.molecule.MoleculeSystem": [[2, 2, 1, "", "add_bond_angle"], [2, 2, 1, "", "add_dihedral"], [2, 2, 1, "", "add_distance"], [2, 2, 1, "", "as_dict"], [2, 2, 1, "", "from_dict"], [2, 2, 1, "", "from_file"], [2, 2, 1, "", "from_string"], [2, 2, 1, "", "get_int_def_inconsistencies"], [2, 2, 1, "", "has_inconsistencies"], [2, 4, 1, "", "molecule"], [2, 2, 1, "", "to_coord_string"]], "turbomoleio.core.molecule.OutOfPlaneAngle": [[2, 2, 1, "", "compute_value"], [2, 5, 1, "", "coord_str"], [2, 5, 1, "", "coord_type"], [2, 5, 1, "", "n_atoms"]], "turbomoleio.core.molecule.PerpendicularBendingAngle": [[2, 2, 1, "", "compute_value"], [2, 5, 1, "", "coord_str"], [2, 5, 1, "", "coord_type"], [2, 5, 1, "", "n_atoms"]], "turbomoleio.core.periodic": [[2, 1, 1, "", "PeriodicSystem"]], "turbomoleio.core.periodic.PeriodicSystem": [[2, 2, 1, "", "as_dict"], [2, 2, 1, "", "from_dict"], [2, 2, 1, "", "from_file"], [2, 2, 1, "", "from_string"], [2, 4, 1, "", "structure"], [2, 2, 1, "", "to_coord_string"]], "turbomoleio.core.tests": [[3, 0, 0, "-", "test_control"], [3, 0, 0, "-", "test_datagroups"], [3, 0, 0, "-", "test_molecule"], [3, 0, 0, "-", "test_periodic"], [3, 0, 0, "-", "test_utils"]], "turbomoleio.core.tests.test_control": [[3, 1, 1, "", "TestControl"], [3, 1, 1, "", "TestDatagroupFunctions"], [3, 1, 1, "", "TestEnergy"], [3, 1, 1, "", "TestGradient"], [3, 1, 1, "", "TestShells"], [3, 3, 1, "", "check_equivalent_dg"]], "turbomoleio.core.tests.test_control.TestControl": [[3, 2, 1, "", "test_add_cosmo"], [3, 2, 1, "", "test_cpc"], [3, 2, 1, "", "test_disp"], [3, 2, 1, "", "test_energy"], [3, 2, 1, "", "test_from_file"], [3, 2, 1, "", "test_from_metric"], [3, 2, 1, "", "test_get_charge"], [3, 2, 1, "", "test_get_shells"], [3, 2, 1, "", "test_get_subfiles_list"], [3, 2, 1, "", "test_gradient"], [3, 2, 1, "", "test_is_uhf"], [3, 2, 1, "", "test_remove_energy"], [3, 2, 1, "", "test_remove_energy_in_control"], [3, 2, 1, "", "test_remove_gradient"], [3, 2, 1, "", "test_remove_gradient_in_control"]], "turbomoleio.core.tests.test_control.TestDatagroupFunctions": [[3, 5, 1, "", "pytestmark"], [3, 2, 1, "", "test_adg"], [3, 2, 1, "", "test_cdg"], [3, 2, 1, "", "test_cpc"], [3, 2, 1, "", "test_kdg"], [3, 2, 1, "", "test_mdgo"], [3, 2, 1, "", "test_sdg"], [3, 2, 1, "", "test_sdgo"]], "turbomoleio.core.tests.test_control.TestEnergy": [[3, 2, 1, "", "test_energy_mp2"], [3, 2, 1, "", "test_energy_scf"]], "turbomoleio.core.tests.test_control.TestGradient": [[3, 2, 1, "", "test_empty_gradient"], [3, 2, 1, "", "test_fail_parsing"], [3, 2, 1, "", "test_gradient"], [3, 2, 1, "", "test_periodic"]], "turbomoleio.core.tests.test_control.TestShells": [[3, 2, 1, "", "test_closed"], [3, 2, 1, "", "test_fail_parse"], [3, 2, 1, "", "test_fractional"], [3, 2, 1, "", "test_uhf"]], "turbomoleio.core.tests.test_datagroups": [[3, 3, 1, "", "test_cleanup"], [3, 3, 1, "", "test_compare"], [3, 3, 1, "", "test_compare_datagroup_string"], [3, 3, 1, "", "test_datagroups"], [3, 3, 1, "", "test_empty"], [3, 3, 1, "", "test_modify_data_group_options"], [3, 3, 1, "", "test_remove_comments"], [3, 3, 1, "", "test_remove_dg_from_list"], [3, 3, 1, "", "test_sdg_subfiles"], [3, 3, 1, "", "test_show_data_group_option"], [3, 3, 1, "", "test_show_subfile_fname"], [3, 3, 1, "", "test_split_string_to_dg_list"]], "turbomoleio.core.tests.test_molecule": [[3, 1, 1, "", "TestInternalDefinition"], [3, 1, 1, "", "TestMoleculeSystem"], [3, 3, 1, "", "check_dg"], [3, 3, 1, "", "check_user_defined_bonds_dg"]], "turbomoleio.core.tests.test_molecule.TestInternalDefinition": [[3, 5, 1, "", "pytestmark"], [3, 2, 1, "", "test_bond_angle"], [3, 2, 1, "", "test_collinear_bending_angle"], [3, 2, 1, "", "test_dihedral_angle"], [3, 2, 1, "", "test_distance"], [3, 2, 1, "", "test_from_string"], [3, 2, 1, "", "test_inverse_distance"], [3, 2, 1, "", "test_out_of_plane_angle"], [3, 2, 1, "", "test_perpendicular_bending_angle"]], "turbomoleio.core.tests.test_molecule.TestMoleculeSystem": [[3, 2, 1, "", "test_add_bond_angle"], [3, 2, 1, "", "test_add_dihedral"], [3, 2, 1, "", "test_add_distance"], [3, 2, 1, "", "test_check_index"], [3, 2, 1, "", "test_disordered"], [3, 2, 1, "", "test_dummy_atoms"], [3, 2, 1, "", "test_from_string"], [3, 2, 1, "", "test_to_coord_string"], [3, 2, 1, "", "test_to_file"]], "turbomoleio.core.tests.test_periodic": [[3, 1, 1, "", "TestPeriodicSystem"]], "turbomoleio.core.tests.test_periodic.TestPeriodicSystem": [[3, 2, 1, "", "test_periodic_2d"], [3, 2, 1, "", "test_periodic_3d"], [3, 2, 1, "", "test_periodic_wrong_rotation"], [3, 2, 1, "", "test_read_periodic_2d"]], "turbomoleio.core.tests.test_utils": [[3, 1, 1, "", "TestGetVersion"]], "turbomoleio.core.tests.test_utils.TestGetVersion": [[3, 2, 1, "", "test_V72"], [3, 2, 1, "", "test_V731"], [3, 2, 1, "", "test_V741"], [3, 2, 1, "", "test_V751"]], "turbomoleio.core.utils": [[2, 3, 1, "", "define_quit"], [2, 3, 1, "", "get_tm_version"]], "turbomoleio.input": [[4, 0, 0, "-", "define"], [5, 0, 0, "-", "templates"], [6, 0, 0, "-", "tests"], [4, 0, 0, "-", "utils"]], "turbomoleio.input.define": [[4, 6, 1, "", "DefineError"], [4, 6, 1, "", "DefineExpectError"], [4, 6, 1, "", "DefineIredError"], [4, 6, 1, "", "DefineParameterError"], [4, 1, 1, "", "DefineRunner"], [4, 6, 1, "", "UnsupportedDefineStateError"]], "turbomoleio.input.define.DefineRunner": [[4, 2, 1, "", "dump_command_file"], [4, 2, 1, "", "run_full"], [4, 2, 1, "", "run_generate_mo_files"], [4, 2, 1, "", "run_update_internal_coords"]], "turbomoleio.input.tests": [[6, 0, 0, "-", "test_define"], [6, 0, 0, "-", "test_utils"]], "turbomoleio.input.tests.test_define": [[6, 1, 1, "", "TestDefineRunner"], [6, 1, 1, "", "TestExceptions"], [6, 3, 1, "", "dr_data"]], "turbomoleio.input.tests.test_define.TestDefineRunner": [[6, 2, 1, "", "assert_sendline_calls"], [6, 2, 1, "", "assert_sendline_has_calls"], [6, 2, 1, "", "test_add_atomic_coordinates_from_file"], [6, 2, 1, "", "test_add_atomic_coordinates_from_file_cartesian"], [6, 2, 1, "", "test_add_cosmo"], [6, 2, 1, "", "test_close"], [6, 2, 1, "", "test_copy_mo_files_ab_mos"], [6, 2, 1, "", "test_copy_mo_files_alpha_beta"], [6, 2, 1, "", "test_copy_mo_files_error"], [6, 2, 1, "", "test_copy_mo_files_mo"], [6, 2, 1, "", "test_define_basis_sets"], [6, 2, 1, "", "test_define_core_potentials"], [6, 2, 1, "", "test_define_symmetry"], [6, 2, 1, "", "test_define_symmetry_error"], [6, 2, 1, "", "test_determine_symmetry"], [6, 2, 1, "", "test_determine_symmetry_eps"], [6, 2, 1, "", "test_dump_command_file"], [6, 2, 1, "", "test_excited_state_menu_error_not_activated"], [6, 2, 1, "", "test_excited_state_menu_frequency"], [6, 2, 1, "", "test_excited_state_menu_irrep"], [6, 2, 1, "", "test_excited_state_menu_irrep_wrong_sym"], [6, 2, 1, "", "test_excited_state_menu_polly"], [6, 2, 1, "", "test_excited_state_menu_rpas"], [6, 2, 1, "", "test_excited_state_menu_urpa"], [6, 2, 1, "", "test_excited_state_menu_urpa_error"], [6, 2, 1, "", "test_excited_state_menu_wrong_ex_method"], [6, 2, 1, "", "test_excited_state_menu_wrong_menu"], [6, 2, 1, "", "test_existing_coordinates"], [6, 2, 1, "", "test_existing_coordinates_cartesian"], [6, 2, 1, "", "test_existing_coordinates_error"], [6, 2, 1, "", "test_existing_coordinates_no_update"], [6, 2, 1, "", "test_existing_coordinates_unsupported"], [6, 2, 1, "", "test_expect"], [6, 2, 1, "", "test_expect_raise_eof"], [6, 2, 1, "", "test_expect_raise_timeout"], [6, 2, 1, "", "test_extended_hueckel_theory_menu_charge"], [6, 2, 1, "", "test_extended_hueckel_theory_menu_default"], [6, 2, 1, "", "test_extended_hueckel_theory_menu_error"], [6, 2, 1, "", "test_extended_hueckel_theory_menu_nocharge"], [6, 2, 1, "", "test_extended_hueckel_theory_menu_unpaired"], [6, 2, 1, "", "test_general_menu_ccsdt"], [6, 2, 1, "", "test_general_menu_dft"], [6, 2, 1, "", "test_general_menu_hf"], [6, 2, 1, "", "test_general_menu_wrong_method"], [6, 2, 1, "", "test_generate_internal_coordinates"], [6, 2, 1, "", "test_generate_internal_coordinates_error"], [6, 2, 1, "", "test_geometry_menu_copymo"], [6, 2, 1, "", "test_geometry_menu_incompatibility_1"], [6, 2, 1, "", "test_geometry_menu_incompatibility_2"], [6, 2, 1, "", "test_geometry_menu_new_coords_1"], [6, 2, 1, "", "test_geometry_menu_new_coords_2"], [6, 2, 1, "", "test_geometry_menu_new_coords_3"], [6, 2, 1, "", "test_geometry_menu_new_coords_4"], [6, 2, 1, "", "test_geometry_menu_no_new_coords"], [6, 2, 1, "", "test_get_bin_path"], [6, 2, 1, "", "test_go_to_general_menu"], [6, 2, 1, "", "test_init"], [6, 2, 1, "", "test_initialize_control_1"], [6, 2, 1, "", "test_initialize_control_2"], [6, 2, 1, "", "test_initialize_control_incompatibility"], [6, 2, 1, "", "test_is_alive"], [6, 2, 1, "", "test_postprocess"], [6, 2, 1, "", "test_quit_general_menu"], [6, 2, 1, "", "test_run_full_1"], [6, 2, 1, "", "test_run_full_2"], [6, 2, 1, "", "test_run_generate_mo_files"], [6, 2, 1, "", "test_run_generate_mo_files_sym"], [6, 2, 1, "", "test_run_update_internal_coords"], [6, 2, 1, "", "test_run_update_internal_coords_error"], [6, 2, 1, "", "test_sendline"], [6, 2, 1, "", "test_set_basis"], [6, 2, 1, "", "test_set_basis_error"], [6, 2, 1, "", "test_set_basis_error_2"], [6, 2, 1, "", "test_set_basis_error_3"], [6, 2, 1, "", "test_set_dft_options_no_dft"], [6, 2, 1, "", "test_set_dft_options_use_dft"], [6, 2, 1, "", "test_set_dft_options_wrong_xc"], [6, 2, 1, "", "test_set_ecp_error"], [6, 2, 1, "", "test_set_ecp_error_2"], [6, 2, 1, "", "test_set_ecp_error_3"], [6, 2, 1, "", "test_set_metric"], [6, 2, 1, "", "test_set_mo_from_control_file"], [6, 2, 1, "", "test_set_mo_from_control_file_2"], [6, 2, 1, "", "test_set_mo_from_control_file_error"], [6, 2, 1, "", "test_set_mo_from_control_file_longpath"], [6, 2, 1, "", "test_set_mp2_options"], [6, 2, 1, "", "test_set_mp2_options_f12"], [6, 2, 1, "", "test_set_mp2_options_geoopt"], [6, 2, 1, "", "test_set_mp2_options_mp2"], [6, 2, 1, "", "test_set_mp2_options_mp2_error"], [6, 2, 1, "", "test_set_ri_state"], [6, 2, 1, "", "test_set_ri_state_marij"], [6, 2, 1, "", "test_set_scf_options"], [6, 2, 1, "", "test_skip_atomic_attribute_menu"], [6, 2, 1, "", "test_skip_atomic_attribute_menu_error"], [6, 2, 1, "", "test_skip_atomic_attribute_menu_internal"], [6, 2, 1, "", "test_switch_to_atomic_attribute_menu"], [6, 2, 1, "", "test_switch_to_atomic_attribute_menu_internal"], [6, 2, 1, "", "test_switch_to_atomic_attribute_menu_internal_error"], [6, 2, 1, "", "test_switch_to_molecular_orbital_definition_menu"], [6, 2, 1, "", "test_switch_to_scf_menu"]], "turbomoleio.input.tests.test_define.TestExceptions": [[6, 2, 1, "", "test_create"]], "turbomoleio.input.tests.test_utils": [[6, 3, 1, "", "test_get_define_template"], [6, 3, 1, "", "test_validate_parameters"]], "turbomoleio.input.utils": [[4, 6, 1, "", "ParametersValidationError"], [4, 3, 1, "", "ex_setter"], [4, 3, 1, "", "get_define_template"], [4, 7, 1, "", "schema_define_params"], [4, 3, 1, "", "validate_parameters"]], "turbomoleio.output": [[7, 0, 0, "-", "data"], [7, 0, 0, "-", "files"], [7, 0, 0, "-", "parser"], [7, 0, 0, "-", "states"], [8, 0, 0, "-", "tests"]], "turbomoleio.output.data": [[7, 1, 1, "", "AoforceNumericalIntegrationData"], [7, 1, 1, "", "AoforceRotationalData"], [7, 1, 1, "", "AoforceVibrationalData"], [7, 1, 1, "", "BaseData"], [7, 1, 1, "", "BasisData"], [7, 1, 1, "", "CosmoData"], [7, 1, 1, "", "DFTData"], [7, 1, 1, "", "DispersionCorrectionData"], [7, 1, 1, "", "ElectrostaticMomentsData"], [7, 1, 1, "", "EscfData"], [7, 1, 1, "", "EscfIterationData"], [7, 1, 1, "", "FunctionalData"], [7, 1, 1, "", "GeometryData"], [7, 1, 1, "", "IntegralData"], [7, 1, 1, "", "MP2Data"], [7, 1, 1, "", "MP2Results"], [7, 1, 1, "", "PeriodicityData"], [7, 1, 1, "", "RelaxConvergenceData"], [7, 1, 1, "", "RelaxData"], [7, 1, 1, "", "RelaxGradientsData"], [7, 1, 1, "", "RiData"], [7, 1, 1, "", "RunData"], [7, 1, 1, "", "ScfData"], [7, 1, 1, "", "ScfEnergiesData"], [7, 1, 1, "", "ScfIterationData"], [7, 1, 1, "", "SingleExcitation"], [7, 1, 1, "", "SmearingData"], [7, 1, 1, "", "SpinData"], [7, 1, 1, "", "StatptData"], [7, 1, 1, "", "SymmetryData"], [7, 1, 1, "", "TurbomoleData"]], "turbomoleio.output.data.AoforceNumericalIntegrationData": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.data.AoforceRotationalData": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.data.AoforceVibrationalData": [[7, 2, 1, "", "from_parser"], [7, 2, 1, "", "get_freqs_df"], [7, 2, 1, "", "n_negative_freqs"], [7, 2, 1, "", "n_positive_freqs"], [7, 2, 1, "", "n_zero_freqs"]], "turbomoleio.output.data.BaseData": [[7, 2, 1, "", "from_file"], [7, 2, 1, "", "from_parser"], [7, 2, 1, "", "from_string"]], "turbomoleio.output.data.BasisData": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.data.CosmoData": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.data.DFTData": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.data.DispersionCorrectionData": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.data.ElectrostaticMomentsData": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.data.EscfData": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.data.EscfIterationData": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.data.FunctionalData": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.data.GeometryData": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.data.IntegralData": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.data.MP2Data": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.data.MP2Results": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.data.PeriodicityData": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.data.RelaxConvergenceData": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.data.RelaxData": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.data.RelaxGradientsData": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.data.RiData": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.data.RunData": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.data.ScfData": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.data.ScfEnergiesData": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.data.ScfIterationData": [[7, 2, 1, "", "from_parser"], [7, 2, 1, "", "plot_energies"]], "turbomoleio.output.data.SmearingData": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.data.SpinData": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.data.StatptData": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.data.SymmetryData": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.data.TurbomoleData": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.files": [[7, 1, 1, "", "AoforceOutput"], [7, 1, 1, "", "EgradOutput"], [7, 1, 1, "", "EscfOnlyOutput"], [7, 1, 1, "", "EscfOutput"], [7, 1, 1, "", "GradOutput"], [7, 1, 1, "", "JobexOutput"], [7, 1, 1, "", "MP2Output"], [7, 1, 1, "", "RelaxOutput"], [7, 1, 1, "", "Ricc2Output"], [7, 1, 1, "", "ScfOutput"], [7, 1, 1, "", "StatptOutput"]], "turbomoleio.output.files.AoforceOutput": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.files.EgradOutput": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.files.EscfOnlyOutput": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.files.EscfOutput": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.files.GradOutput": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.files.JobexOutput": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.files.MP2Output": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.files.RelaxOutput": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.files.Ricc2Output": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.files.ScfOutput": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.files.StatptOutput": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.parser": [[7, 1, 1, "", "Parser"], [7, 3, 1, "", "convert_float"], [7, 3, 1, "", "convert_int"], [7, 3, 1, "", "convert_time_string"]], "turbomoleio.output.parser.Parser": [[7, 2, 1, "", "all_done"], [7, 2, 1, "", "aoforce_analysis"], [7, 2, 1, "", "aoforce_numerical_integration"], [7, 2, 1, "", "basis"], [7, 2, 1, "", "centers"], [7, 2, 1, "", "coordinates"], [7, 2, 1, "", "cosmo_header"], [7, 2, 1, "", "cosmo_results"], [7, 2, 1, "", "density_functional_data"], [7, 2, 1, "", "dftd"], [7, 2, 1, "", "egrad_excited_state"], [7, 2, 1, "", "electrostatic_moments"], [7, 2, 1, "", "escf_excitations"], [7, 2, 1, "", "escf_gs_total_en"], [7, 2, 1, "", "escf_iterations"], [7, 2, 1, "", "fermi"], [7, 2, 1, "", "from_file"], [7, 2, 1, "", "get_split_jobex_parsers"], [7, 2, 1, "", "get_value"], [7, 2, 1, "", "gradient"], [7, 2, 1, "", "grep_line"], [7, 2, 1, "", "header"], [7, 2, 1, "", "integral"], [7, 2, 1, "", "is_uhf"], [7, 2, 1, "", "mp2_data"], [7, 2, 1, "", "mp2_results"], [7, 2, 1, "", "periodicity_data"], [7, 2, 1, "", "pre_escf_run"], [7, 2, 1, "", "pre_scf_run"], [7, 2, 1, "", "rdgrad_memory"], [7, 2, 1, "", "relax_conv_info"], [7, 2, 1, "", "relax_gradient_values"], [7, 2, 1, "", "relax_info"], [7, 2, 1, "", "rij_info"], [7, 2, 1, "", "riper_scf_energies"], [7, 2, 1, "", "s2"], [7, 2, 1, "", "scf_energies"], [7, 2, 1, "", "scf_iterations"], [7, 2, 1, "", "statpt_info"], [7, 4, 1, "", "string"], [7, 2, 1, "", "symmetry"], [7, 2, 1, "", "timings"]], "turbomoleio.output.states": [[7, 1, 1, "", "EigerOutput"], [7, 1, 1, "", "EigerRunner"], [7, 1, 1, "", "State"], [7, 1, 1, "", "States"], [7, 3, 1, "", "get_mos_energies"]], "turbomoleio.output.states.EigerOutput": [[7, 2, 1, "", "compare_states"], [7, 2, 1, "", "from_file"], [7, 2, 1, "", "from_string"]], "turbomoleio.output.states.EigerRunner": [[7, 2, 1, "", "get_eiger_output"], [7, 2, 1, "", "run"], [7, 2, 1, "", "to_file"]], "turbomoleio.output.states.State": [[7, 2, 1, "", "as_dict"], [7, 2, 1, "", "from_dict"], [7, 4, 1, "", "has_fractional_occ"], [7, 4, 1, "", "max_occupation"]], "turbomoleio.output.states.States": [[7, 2, 1, "", "as_dict"], [7, 4, 1, "", "eigenvalues"], [7, 2, 1, "", "filter_states"], [7, 2, 1, "", "from_file"], [7, 4, 1, "", "gap"], [7, 2, 1, "", "generate_lowest_filled_states"], [7, 2, 1, "", "get_shells"], [7, 4, 1, "", "has_fractional_occ"], [7, 4, 1, "", "has_hole"], [7, 4, 1, "", "homo"], [7, 4, 1, "", "homo_index"], [7, 2, 1, "", "insert"], [7, 4, 1, "", "irrep_indices"], [7, 4, 1, "", "irreps"], [7, 4, 1, "", "is_uhf"], [7, 4, 1, "", "lumo"], [7, 4, 1, "", "lumo_index"], [7, 4, 1, "", "n_states"], [7, 4, 1, "", "occupations"], [7, 4, 1, "", "spins"], [7, 4, 1, "", "total_electrons"]], "turbomoleio.output.tests": [[8, 0, 0, "-", "test_data"], [8, 0, 0, "-", "test_files"], [8, 0, 0, "-", "test_parser"], [8, 0, 0, "-", "test_states"]], "turbomoleio.output.tests.test_data": [[8, 3, 1, "", "test_AoforceVibrationalData"], [8, 3, 1, "", "test_ScfIterationData"], [8, 3, 1, "", "test_str"]], "turbomoleio.output.tests.test_files": [[8, 1, 1, "", "TestFiles"], [8, 3, 1, "", "cls_dict_path"], [8, 3, 1, "", "generate_files"]], "turbomoleio.output.tests.test_files.TestFiles": [[8, 2, 1, "", "test_properties"]], "turbomoleio.output.tests.test_parser": [[8, 1, 1, "", "TestFunctions"], [8, 1, 1, "", "TestParser"], [8, 3, 1, "", "generate_files"], [8, 3, 1, "", "method"], [8, 3, 1, "", "parser_and_dict"]], "turbomoleio.output.tests.test_parser.TestFunctions": [[8, 2, 1, "", "test_convert_float"], [8, 2, 1, "", "test_convert_int"], [8, 2, 1, "", "test_convert_time_string"]], "turbomoleio.output.tests.test_parser.TestParser": [[8, 2, 1, "", "test_fail_all_done_check"], [8, 2, 1, "", "test_get_split_jobex_parsers"], [8, 2, 1, "", "test_get_value"], [8, 2, 1, "", "test_grep_line"], [8, 2, 1, "", "test_properties"]], "turbomoleio.output.tests.test_states": [[8, 3, 1, "", "test_closed"], [8, 3, 1, "", "test_eiger_runner"], [8, 3, 1, "", "test_error_homo"], [8, 3, 1, "", "test_hole"], [8, 3, 1, "", "test_no_empty_states"], [8, 3, 1, "", "test_parsing_failures"], [8, 3, 1, "", "test_state"], [8, 3, 1, "", "test_uhf"]], "turbomoleio.testfiles": [[9, 0, 0, "-", "utils"]], "turbomoleio.testfiles.utils": [[9, 1, 1, "", "ItestConfig"], [9, 6, 1, "", "ItestError"], [9, 3, 1, "", "assert_MSONable"], [9, 3, 1, "", "assert_almost_equal"], [9, 3, 1, "", "compare_differences"], [9, 3, 1, "", "generate_control_for_test"], [9, 3, 1, "", "generate_reference_out_parser_files"], [9, 3, 1, "", "generate_reference_output"], [9, 3, 1, "", "get_control_filepath"], [9, 3, 1, "", "get_control_integration"], [9, 3, 1, "", "get_sp"], [9, 3, 1, "", "get_tfp"], [9, 3, 1, "", "gisnan"], [9, 3, 1, "", "has_matplotlib"], [9, 3, 1, "", "run_itest"], [9, 3, 1, "", "temp_dir"], [9, 3, 1, "", "touch_file"]], "turbomoleio.testfiles.utils.ItestConfig": [[9, 5, 1, "", "define_timeout"], [9, 5, 1, "", "delete_tmp_dir"], [9, 5, 1, "", "dryrun"], [9, 5, 1, "", "dryrun_fpath"], [9, 5, 1, "", "dryrun_use_ref_control"], [9, 5, 1, "", "generate_ref"], [9, 5, 1, "", "tol"]]}, "objtypes": {"0": "py:module", "1": "py:class", "2": "py:method", "3": "py:function", "4": "py:property", "5": "py:attribute", "6": "py:exception", "7": "py:data"}, "objnames": {"0": ["py", "module", "Python module"], "1": ["py", "class", "Python class"], "2": ["py", "method", "Python method"], "3": ["py", "function", "Python function"], "4": ["py", "property", "Python property"], "5": ["py", "attribute", "Python attribute"], "6": ["py", "exception", "Python exception"], "7": ["py", "data", "Python data"]}, "titleterms": {"turbomoleio": [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 21], "packag": [1, 2, 3, 4, 5, 6, 7, 8, 9], "subpackag": [1, 2, 4, 7], "modul": [1, 2, 3, 4, 5, 6, 7, 8, 9], "content": [1, 2, 3, 4, 5, 6, 7, 8, 9], "core": [2, 3], "submodul": [2, 3, 4, 6, 7, 8, 9], "base": 2, "control": [2, 14], "datagroup": [2, 14], "molecul": 2, "period": [2, 13], "symmetri": 2, "util": [2, 4, 9], "test": [3, 6, 8, 12, 16, 18, 19], "test_control": 3, "test_datagroup": 3, "test_molecul": 3, "test_period": 3, "test_util": [3, 6], "input": [4, 5, 6], "defin": [4, 15, 16], "templat": 5, "test_defin": 6, "output": [7, 8, 18, 19, 23], "data": [7, 14, 23], "file": [7, 13, 14, 23], "parser": 7, "state": [7, 23], "test_data": 8, "test_fil": 8, "test_pars": 8, "test_stat": 8, "testfil": 9, "appendix": 10, "report": 11, "bug": [11, 12], "changelog": 12, "releas": 12, "1": 12, "3": 12, "0": 12, "feb": 12, "24": 12, "2022": 12, "develop": [12, 21], "chang": [12, 19], "2": 12, "16": 12, "15": 12, "featur": 12, "ad": 12, "sep": 12, "20": 12, "2021": 12, "fix": 12, "mar": 12, "11": 12, "The": [13, 14, 15, 19, 23], "coord": 13, "system": 13, "group": 14, "object": [14, 23], "access": 14, "valu": 14, "modifi": 14, "run": 15, "definerunn": 15, "paramet": 15, "valid": [15, 16], "runner": 16, "contribut": [17, 21], "log": [18, 23], "pars": [18, 19, 23], "new": [18, 19], "quantiti": 18, "type": 18, "suit": 19, "unit": 19, "integr": 19, "write": 19, "turbomol": 19, "version": [19, 20], "standard": 19, "procedur": 19, "backward": 20, "compat": 20, "user": 21, "guid": 21, "addit": 21, "inform": 21, "indic": 21, "tabl": 21, "licens": 22, "quick": 23, "start": 23, "overal": 23, "structur": 23, "common": 23}, "envversion": {"sphinx.domains.c": 3, "sphinx.domains.changeset": 1, "sphinx.domains.citation": 1, "sphinx.domains.cpp": 9, "sphinx.domains.index": 1, "sphinx.domains.javascript": 3, "sphinx.domains.math": 2, "sphinx.domains.python": 4, "sphinx.domains.rst": 2, "sphinx.domains.std": 2, "sphinx.ext.intersphinx": 1, "sphinx.ext.todo": 2, "sphinx.ext.viewcode": 1, "sphinx": 58}, "alltitles": {"turbomoleio": [[0, "turbomoleio"], [21, "turbomoleio"]], "turbomoleio package": [[1, "turbomoleio-package"]], "Subpackages": [[1, "subpackages"], [2, "subpackages"], [4, "subpackages"], [7, "subpackages"]], "Module contents": [[1, "module-turbomoleio"], [2, "module-turbomoleio.core"], [3, "module-turbomoleio.core.tests"], [4, "module-turbomoleio.input"], [5, "module-turbomoleio.input.templates"], [6, "module-turbomoleio.input.tests"], [7, "module-turbomoleio.output"], [8, "module-turbomoleio.output.tests"], [9, "module-turbomoleio.testfiles"]], "turbomoleio.core package": [[2, "turbomoleio-core-package"]], "Submodules": [[2, "submodules"], [3, "submodules"], [4, "submodules"], [6, "submodules"], [7, "submodules"], [8, "submodules"], [9, "submodules"]], "turbomoleio.core.base module": [[2, "module-turbomoleio.core.base"]], "turbomoleio.core.control module": [[2, "module-turbomoleio.core.control"]], "turbomoleio.core.datagroups module": [[2, "module-turbomoleio.core.datagroups"]], "turbomoleio.core.molecule module": [[2, "module-turbomoleio.core.molecule"]], "turbomoleio.core.periodic module": [[2, "module-turbomoleio.core.periodic"]], "turbomoleio.core.symmetry module": [[2, "module-turbomoleio.core.symmetry"]], "turbomoleio.core.utils module": [[2, "module-turbomoleio.core.utils"]], "turbomoleio.core.tests package": [[3, "turbomoleio-core-tests-package"]], "turbomoleio.core.tests.test_control module": [[3, "module-turbomoleio.core.tests.test_control"]], "turbomoleio.core.tests.test_datagroups module": [[3, "module-turbomoleio.core.tests.test_datagroups"]], "turbomoleio.core.tests.test_molecule module": [[3, "module-turbomoleio.core.tests.test_molecule"]], "turbomoleio.core.tests.test_periodic module": [[3, "module-turbomoleio.core.tests.test_periodic"]], "turbomoleio.core.tests.test_utils module": [[3, "module-turbomoleio.core.tests.test_utils"]], "turbomoleio.input package": [[4, "turbomoleio-input-package"]], "turbomoleio.input.define module": [[4, "module-turbomoleio.input.define"]], "turbomoleio.input.utils module": [[4, "module-turbomoleio.input.utils"]], "turbomoleio.input.templates package": [[5, "turbomoleio-input-templates-package"]], "turbomoleio.input.tests package": [[6, "turbomoleio-input-tests-package"]], "turbomoleio.input.tests.test_define module": [[6, "module-turbomoleio.input.tests.test_define"]], "turbomoleio.input.tests.test_utils module": [[6, "module-turbomoleio.input.tests.test_utils"]], "turbomoleio.output package": [[7, "turbomoleio-output-package"]], "turbomoleio.output.data module": [[7, "module-turbomoleio.output.data"]], "turbomoleio.output.files module": [[7, "module-turbomoleio.output.files"]], "turbomoleio.output.parser module": [[7, "module-turbomoleio.output.parser"]], "turbomoleio.output.states module": [[7, "module-turbomoleio.output.states"]], "turbomoleio.output.tests package": [[8, "turbomoleio-output-tests-package"]], "turbomoleio.output.tests.test_data module": [[8, "module-turbomoleio.output.tests.test_data"]], "turbomoleio.output.tests.test_files module": [[8, "module-turbomoleio.output.tests.test_files"]], "turbomoleio.output.tests.test_parser module": [[8, "module-turbomoleio.output.tests.test_parser"]], "turbomoleio.output.tests.test_states module": [[8, "module-turbomoleio.output.tests.test_states"]], "turbomoleio.testfiles package": [[9, "turbomoleio-testfiles-package"]], "turbomoleio.testfiles.utils module": [[9, "module-turbomoleio.testfiles.utils"]], "Appendix": [[10, "appendix"]], "Reporting bugs": [[11, "reporting-bugs"]], "Changelog": [[12, "changelog"]], "Release 1.3.0 (Feb 24, 2022)": [[12, "release-1-3-0-feb-24-2022"]], "Developer changes": [[12, "developer-changes"]], "Release 1.2.0 (Feb 16, 2022)": [[12, "release-1-2-0-feb-16-2022"]], "Release 1.1.1 (Feb 15, 2022)": [[12, "release-1-1-1-feb-15-2022"]], "Features added": [[12, "features-added"], [12, "id1"]], "Release 1.1.0 (Sep 20, 2021)": [[12, "release-1-1-0-sep-20-2021"]], "Bug fixing": [[12, "bug-fixing"]], "Testing and development": [[12, "testing-and-development"]], "Release 1.0.0 (Mar 11, 2021)": [[12, "release-1-0-0-mar-11-2021"]], "The coord file": [[13, "the-coord-file"]], "Periodic systems": [[13, "periodic-systems"]], "The data group files": [[14, "the-data-group-files"]], "The DataGroups object": [[14, "the-datagroups-object"]], "Accessing a data group value": [[14, "accessing-a-data-group-value"]], "Modifying a data group value": [[14, "modifying-a-data-group-value"]], "The Control object": [[14, "the-control-object"]], "Running define": [[15, "running-define"]], "The DefineRunner parameters": [[15, "the-definerunner-parameters"]], "Validation": [[15, "validation"], [16, "validation"]], "Define runner": [[16, "define-runner"]], "Tests": [[16, "tests"], [18, "tests"]], "Contributing": [[17, "contributing"]], "Output logs parsing": [[18, "output-logs-parsing"]], "Parsing a new quantity": [[18, "parsing-a-new-quantity"]], "Parsing a new type of log": [[18, "parsing-a-new-type-of-log"]], "Testing": [[19, "testing"]], "The test suite": [[19, "the-test-suite"]], "Unit tests": [[19, "unit-tests"]], "Integration tests": [[19, "integration-tests"], [19, "id1"]], "Writing new tests": [[19, "writing-new-tests"]], "Tests for output parsing": [[19, "tests-for-output-parsing"]], "Turbomole version change": [[19, "turbomole-version-change"]], "Standard procedure": [[19, "standard-procedure"]], "Unit-tests for output parsing": [[19, "unit-tests-for-output-parsing"]], "Versioning": [[20, "versioning"]], "Backward-compatibility": [[20, "backward-compatibility"]], "User guide": [[21, null]], "Contributing to turbomoleio": [[21, "contributing-to-turbomoleio"]], "Developer guide": [[21, null]], "Additional information": [[21, "additional-information"], [21, null]], "Indices and tables": [[21, "indices-and-tables"]], "License": [[22, "license"]], "Outputs parsing": [[23, "outputs-parsing"]], "The log files": [[23, "the-log-files"]], "Quick Start": [[23, "quick-start"]], "Overall Structure": [[23, "overall-structure"]], "Data and File Objects": [[23, "data-and-file-objects"]], "Common data objects": [[23, "common-data-objects"]], "File data objects": [[23, "file-data-objects"]], "The States object": [[23, "the-states-object"]]}, "indexentries": {"module": [[1, "module-turbomoleio"], [2, "module-turbomoleio.core"], [2, "module-turbomoleio.core.base"], [2, "module-turbomoleio.core.control"], [2, "module-turbomoleio.core.datagroups"], [2, "module-turbomoleio.core.molecule"], [2, "module-turbomoleio.core.periodic"], [2, "module-turbomoleio.core.symmetry"], [2, "module-turbomoleio.core.utils"], [3, "module-turbomoleio.core.tests"], [3, "module-turbomoleio.core.tests.test_control"], [3, "module-turbomoleio.core.tests.test_datagroups"], [3, "module-turbomoleio.core.tests.test_molecule"], [3, "module-turbomoleio.core.tests.test_periodic"], [3, "module-turbomoleio.core.tests.test_utils"], [4, "module-turbomoleio.input"], [4, "module-turbomoleio.input.define"], [4, "module-turbomoleio.input.utils"], [5, "module-turbomoleio.input.templates"], [6, "module-turbomoleio.input.tests"], [6, "module-turbomoleio.input.tests.test_define"], [6, "module-turbomoleio.input.tests.test_utils"], [7, "module-turbomoleio.output"], [7, "module-turbomoleio.output.data"], [7, "module-turbomoleio.output.files"], [7, "module-turbomoleio.output.parser"], [7, "module-turbomoleio.output.states"], [8, "module-turbomoleio.output.tests"], [8, "module-turbomoleio.output.tests.test_data"], [8, "module-turbomoleio.output.tests.test_files"], [8, "module-turbomoleio.output.tests.test_parser"], [8, "module-turbomoleio.output.tests.test_states"], [9, "module-turbomoleio.testfiles"], [9, "module-turbomoleio.testfiles.utils"]], "turbomoleio": [[1, "module-turbomoleio"]], "basesystem (class in turbomoleio.core.base)": [[2, "turbomoleio.core.base.BaseSystem"]], "bondangle (class in turbomoleio.core.molecule)": [[2, "turbomoleio.core.molecule.BondAngle"]], "collinearbendingangle (class in turbomoleio.core.molecule)": [[2, "turbomoleio.core.molecule.CollinearBendingAngle"]], "control (class in turbomoleio.core.control)": [[2, "turbomoleio.core.control.Control"]], "datagroups (class in turbomoleio.core.datagroups)": [[2, "turbomoleio.core.datagroups.DataGroups"]], "defaults (class in turbomoleio.core.control)": [[2, "turbomoleio.core.control.Defaults"]], "dihedralangle (class in turbomoleio.core.molecule)": [[2, "turbomoleio.core.molecule.DihedralAngle"]], "distance (class in turbomoleio.core.molecule)": [[2, "turbomoleio.core.molecule.Distance"]], "energy (class in turbomoleio.core.control)": [[2, "turbomoleio.core.control.Energy"]], "gradient (class in turbomoleio.core.control)": [[2, "turbomoleio.core.control.Gradient"]], "internaldefinition (class in turbomoleio.core.molecule)": [[2, "turbomoleio.core.molecule.InternalDefinition"]], "inversedistance (class in turbomoleio.core.molecule)": [[2, "turbomoleio.core.molecule.InverseDistance"]], "metric (turbomoleio.core.control.defaults attribute)": [[2, "turbomoleio.core.control.Defaults.METRIC"]], "moleculesystem (class in turbomoleio.core.molecule)": [[2, "turbomoleio.core.molecule.MoleculeSystem"]], "outofplaneangle (class in turbomoleio.core.molecule)": [[2, "turbomoleio.core.molecule.OutOfPlaneAngle"]], "periodicsystem (class in turbomoleio.core.periodic)": [[2, "turbomoleio.core.periodic.PeriodicSystem"]], "perpendicularbendingangle (class in turbomoleio.core.molecule)": [[2, "turbomoleio.core.molecule.PerpendicularBendingAngle"]], "shells (class in turbomoleio.core.control)": [[2, "turbomoleio.core.control.Shells"]], "add_bond_angle() (turbomoleio.core.molecule.moleculesystem method)": [[2, "turbomoleio.core.molecule.MoleculeSystem.add_bond_angle"]], "add_cosmo() (turbomoleio.core.control.control method)": [[2, "turbomoleio.core.control.Control.add_cosmo"]], "add_data_group() (turbomoleio.core.datagroups.datagroups method)": [[2, "turbomoleio.core.datagroups.DataGroups.add_data_group"]], "add_dihedral() (turbomoleio.core.molecule.moleculesystem method)": [[2, "turbomoleio.core.molecule.MoleculeSystem.add_dihedral"]], "add_distance() (turbomoleio.core.molecule.moleculesystem method)": [[2, "turbomoleio.core.molecule.MoleculeSystem.add_distance"]], "adg() (in module turbomoleio.core.control)": [[2, "turbomoleio.core.control.adg"]], "adg() (turbomoleio.core.datagroups.datagroups method)": [[2, "turbomoleio.core.datagroups.DataGroups.adg"]], "as_dict() (turbomoleio.core.control.shells method)": [[2, "turbomoleio.core.control.Shells.as_dict"]], "as_dict() (turbomoleio.core.datagroups.datagroups method)": [[2, "turbomoleio.core.datagroups.DataGroups.as_dict"]], "as_dict() (turbomoleio.core.molecule.moleculesystem method)": [[2, "turbomoleio.core.molecule.MoleculeSystem.as_dict"]], "as_dict() (turbomoleio.core.periodic.periodicsystem method)": [[2, "turbomoleio.core.periodic.PeriodicSystem.as_dict"]], "cdg() (in module turbomoleio.core.control)": [[2, "turbomoleio.core.control.cdg"]], "cdg() (turbomoleio.core.datagroups.datagroups method)": [[2, "turbomoleio.core.datagroups.DataGroups.cdg"]], "change_data_group() (turbomoleio.core.datagroups.datagroups method)": [[2, "turbomoleio.core.datagroups.DataGroups.change_data_group"]], "cleanup_string() (in module turbomoleio.core.datagroups)": [[2, "turbomoleio.core.datagroups.cleanup_string"]], "compare() (turbomoleio.core.datagroups.datagroups method)": [[2, "turbomoleio.core.datagroups.DataGroups.compare"]], "compare_datagroup_string() (in module turbomoleio.core.datagroups)": [[2, "turbomoleio.core.datagroups.compare_datagroup_string"]], "compute_value() (turbomoleio.core.molecule.bondangle method)": [[2, "turbomoleio.core.molecule.BondAngle.compute_value"]], "compute_value() (turbomoleio.core.molecule.collinearbendingangle method)": [[2, "turbomoleio.core.molecule.CollinearBendingAngle.compute_value"]], "compute_value() (turbomoleio.core.molecule.dihedralangle method)": [[2, "turbomoleio.core.molecule.DihedralAngle.compute_value"]], "compute_value() (turbomoleio.core.molecule.distance method)": [[2, "turbomoleio.core.molecule.Distance.compute_value"]], "compute_value() (turbomoleio.core.molecule.internaldefinition method)": [[2, "turbomoleio.core.molecule.InternalDefinition.compute_value"]], "compute_value() (turbomoleio.core.molecule.inversedistance method)": [[2, "turbomoleio.core.molecule.InverseDistance.compute_value"]], "compute_value() (turbomoleio.core.molecule.outofplaneangle method)": [[2, "turbomoleio.core.molecule.OutOfPlaneAngle.compute_value"]], "compute_value() (turbomoleio.core.molecule.perpendicularbendingangle method)": [[2, "turbomoleio.core.molecule.PerpendicularBendingAngle.compute_value"]], "coord_lines() (turbomoleio.core.base.basesystem method)": [[2, "turbomoleio.core.base.BaseSystem.coord_lines"]], "coord_str (turbomoleio.core.molecule.bondangle attribute)": [[2, "turbomoleio.core.molecule.BondAngle.coord_str"]], "coord_str (turbomoleio.core.molecule.collinearbendingangle attribute)": [[2, "turbomoleio.core.molecule.CollinearBendingAngle.coord_str"]], "coord_str (turbomoleio.core.molecule.dihedralangle attribute)": [[2, "turbomoleio.core.molecule.DihedralAngle.coord_str"]], "coord_str (turbomoleio.core.molecule.distance attribute)": [[2, "turbomoleio.core.molecule.Distance.coord_str"]], "coord_str (turbomoleio.core.molecule.internaldefinition attribute)": [[2, "turbomoleio.core.molecule.InternalDefinition.coord_str"]], "coord_str (turbomoleio.core.molecule.inversedistance attribute)": [[2, "turbomoleio.core.molecule.InverseDistance.coord_str"]], "coord_str (turbomoleio.core.molecule.outofplaneangle attribute)": [[2, "turbomoleio.core.molecule.OutOfPlaneAngle.coord_str"]], "coord_str (turbomoleio.core.molecule.perpendicularbendingangle attribute)": [[2, "turbomoleio.core.molecule.PerpendicularBendingAngle.coord_str"]], "coord_type (turbomoleio.core.molecule.bondangle attribute)": [[2, "turbomoleio.core.molecule.BondAngle.coord_type"]], "coord_type (turbomoleio.core.molecule.collinearbendingangle attribute)": [[2, "turbomoleio.core.molecule.CollinearBendingAngle.coord_type"]], "coord_type (turbomoleio.core.molecule.dihedralangle attribute)": [[2, "turbomoleio.core.molecule.DihedralAngle.coord_type"]], "coord_type (turbomoleio.core.molecule.distance attribute)": [[2, "turbomoleio.core.molecule.Distance.coord_type"]], "coord_type (turbomoleio.core.molecule.internaldefinition attribute)": [[2, "turbomoleio.core.molecule.InternalDefinition.coord_type"]], "coord_type (turbomoleio.core.molecule.inversedistance attribute)": [[2, "turbomoleio.core.molecule.InverseDistance.coord_type"]], "coord_type (turbomoleio.core.molecule.outofplaneangle attribute)": [[2, "turbomoleio.core.molecule.OutOfPlaneAngle.coord_type"]], "coord_type (turbomoleio.core.molecule.perpendicularbendingangle attribute)": [[2, "turbomoleio.core.molecule.PerpendicularBendingAngle.coord_type"]], "cpc() (in module turbomoleio.core.control)": [[2, "turbomoleio.core.control.cpc"]], "cpc() (turbomoleio.core.control.control method)": [[2, "turbomoleio.core.control.Control.cpc"]], "define_quit() (in module turbomoleio.core.utils)": [[2, "turbomoleio.core.utils.define_quit"]], "delta_e (turbomoleio.core.control.energy property)": [[2, "turbomoleio.core.control.Energy.delta_e"]], "empty() (turbomoleio.core.datagroups.datagroups class method)": [[2, "turbomoleio.core.datagroups.DataGroups.empty"]], "energy (turbomoleio.core.control.control property)": [[2, "turbomoleio.core.control.Control.energy"]], "from_dict() (turbomoleio.core.control.shells class method)": [[2, "turbomoleio.core.control.Shells.from_dict"]], "from_dict() (turbomoleio.core.datagroups.datagroups class method)": [[2, "turbomoleio.core.datagroups.DataGroups.from_dict"]], "from_dict() (turbomoleio.core.molecule.moleculesystem class method)": [[2, "turbomoleio.core.molecule.MoleculeSystem.from_dict"]], "from_dict() (turbomoleio.core.periodic.periodicsystem class method)": [[2, "turbomoleio.core.periodic.PeriodicSystem.from_dict"]], "from_file() (turbomoleio.core.control.control class method)": [[2, "turbomoleio.core.control.Control.from_file"]], "from_file() (turbomoleio.core.control.energy class method)": [[2, "turbomoleio.core.control.Energy.from_file"]], "from_file() (turbomoleio.core.control.gradient class method)": [[2, "turbomoleio.core.control.Gradient.from_file"]], "from_file() (turbomoleio.core.control.shells class method)": [[2, "turbomoleio.core.control.Shells.from_file"]], "from_file() (turbomoleio.core.datagroups.datagroups class method)": [[2, "turbomoleio.core.datagroups.DataGroups.from_file"]], "from_file() (turbomoleio.core.molecule.moleculesystem class method)": [[2, "turbomoleio.core.molecule.MoleculeSystem.from_file"]], "from_file() (turbomoleio.core.periodic.periodicsystem class method)": [[2, "turbomoleio.core.periodic.PeriodicSystem.from_file"]], "from_metric() (turbomoleio.core.control.control class method)": [[2, "turbomoleio.core.control.Control.from_metric"]], "from_string() (turbomoleio.core.control.energy class method)": [[2, "turbomoleio.core.control.Energy.from_string"]], "from_string() (turbomoleio.core.control.gradient class method)": [[2, "turbomoleio.core.control.Gradient.from_string"]], "from_string() (turbomoleio.core.control.shells class method)": [[2, "turbomoleio.core.control.Shells.from_string"]], "from_string() (turbomoleio.core.molecule.internaldefinition class method)": [[2, "turbomoleio.core.molecule.InternalDefinition.from_string"]], "from_string() (turbomoleio.core.molecule.moleculesystem class method)": [[2, "turbomoleio.core.molecule.MoleculeSystem.from_string"]], "from_string() (turbomoleio.core.periodic.periodicsystem class method)": [[2, "turbomoleio.core.periodic.PeriodicSystem.from_string"]], "get_charge() (turbomoleio.core.control.control method)": [[2, "turbomoleio.core.control.Control.get_charge"]], "get_coord_lines() (in module turbomoleio.core.base)": [[2, "turbomoleio.core.base.get_coord_lines"]], "get_int_def_inconsistencies() (turbomoleio.core.molecule.moleculesystem method)": [[2, "turbomoleio.core.molecule.MoleculeSystem.get_int_def_inconsistencies"]], "get_mol_and_indices_frozen() (in module turbomoleio.core.base)": [[2, "turbomoleio.core.base.get_mol_and_indices_frozen"]], "get_shells() (turbomoleio.core.control.control method)": [[2, "turbomoleio.core.control.Control.get_shells"]], "get_subclass_from_str() (turbomoleio.core.molecule.internaldefinition static method)": [[2, "turbomoleio.core.molecule.InternalDefinition.get_subclass_from_str"]], "get_subfiles_list() (turbomoleio.core.control.control method)": [[2, "turbomoleio.core.control.Control.get_subfiles_list"]], "get_tm_version() (in module turbomoleio.core.utils)": [[2, "turbomoleio.core.utils.get_tm_version"]], "gradient (turbomoleio.core.control.control property)": [[2, "turbomoleio.core.control.Control.gradient"]], "has_inconsistencies() (turbomoleio.core.molecule.moleculesystem method)": [[2, "turbomoleio.core.molecule.MoleculeSystem.has_inconsistencies"]], "irreps (turbomoleio.core.control.shells property)": [[2, "turbomoleio.core.control.Shells.irreps"]], "is_uhf (turbomoleio.core.control.control property)": [[2, "turbomoleio.core.control.Control.is_uhf"]], "is_valid() (turbomoleio.core.molecule.internaldefinition method)": [[2, "turbomoleio.core.molecule.InternalDefinition.is_valid"]], "kdg() (in module turbomoleio.core.control)": [[2, "turbomoleio.core.control.kdg"]], "kdg() (turbomoleio.core.datagroups.datagroups method)": [[2, "turbomoleio.core.datagroups.DataGroups.kdg"]], "kill_data_group() (turbomoleio.core.datagroups.datagroups method)": [[2, "turbomoleio.core.datagroups.DataGroups.kill_data_group"]], "last_grad_max (turbomoleio.core.control.gradient property)": [[2, "turbomoleio.core.control.Gradient.last_grad_max"]], "last_grad_norm (turbomoleio.core.control.gradient property)": [[2, "turbomoleio.core.control.Gradient.last_grad_norm"]], "max_gradients (turbomoleio.core.control.gradient property)": [[2, "turbomoleio.core.control.Gradient.max_gradients"]], "mdgo() (in module turbomoleio.core.control)": [[2, "turbomoleio.core.control.mdgo"]], "mdgo() (turbomoleio.core.datagroups.datagroups method)": [[2, "turbomoleio.core.datagroups.DataGroups.mdgo"]], "modify_data_group_options() (turbomoleio.core.datagroups.datagroups method)": [[2, "turbomoleio.core.datagroups.DataGroups.modify_data_group_options"]], "molecule (turbomoleio.core.molecule.moleculesystem property)": [[2, "turbomoleio.core.molecule.MoleculeSystem.molecule"]], "n_atoms (turbomoleio.core.molecule.bondangle attribute)": [[2, "turbomoleio.core.molecule.BondAngle.n_atoms"]], "n_atoms (turbomoleio.core.molecule.collinearbendingangle attribute)": [[2, "turbomoleio.core.molecule.CollinearBendingAngle.n_atoms"]], "n_atoms (turbomoleio.core.molecule.dihedralangle attribute)": [[2, "turbomoleio.core.molecule.DihedralAngle.n_atoms"]], "n_atoms (turbomoleio.core.molecule.distance attribute)": [[2, "turbomoleio.core.molecule.Distance.n_atoms"]], "n_atoms (turbomoleio.core.molecule.internaldefinition attribute)": [[2, "turbomoleio.core.molecule.InternalDefinition.n_atoms"]], "n_atoms (turbomoleio.core.molecule.inversedistance attribute)": [[2, "turbomoleio.core.molecule.InverseDistance.n_atoms"]], "n_atoms (turbomoleio.core.molecule.outofplaneangle attribute)": [[2, "turbomoleio.core.molecule.OutOfPlaneAngle.n_atoms"]], "n_atoms (turbomoleio.core.molecule.perpendicularbendingangle attribute)": [[2, "turbomoleio.core.molecule.PerpendicularBendingAngle.n_atoms"]], "n_steps (turbomoleio.core.control.energy property)": [[2, "turbomoleio.core.control.Energy.n_steps"]], "n_steps (turbomoleio.core.control.gradient property)": [[2, "turbomoleio.core.control.Gradient.n_steps"]], "ndg (turbomoleio.core.datagroups.datagroups property)": [[2, "turbomoleio.core.datagroups.DataGroups.ndg"]], "norms (turbomoleio.core.control.gradient property)": [[2, "turbomoleio.core.control.Gradient.norms"]], "number_of_data_groups (turbomoleio.core.datagroups.datagroups property)": [[2, "turbomoleio.core.datagroups.DataGroups.number_of_data_groups"]], "plot() (turbomoleio.core.control.energy method)": [[2, "turbomoleio.core.control.Energy.plot"]], "plot() (turbomoleio.core.control.gradient method)": [[2, "turbomoleio.core.control.Gradient.plot"]], "remove_comments() (in module turbomoleio.core.datagroups)": [[2, "turbomoleio.core.datagroups.remove_comments"]], "remove_dg_from_list() (in module turbomoleio.core.datagroups)": [[2, "turbomoleio.core.datagroups.remove_dg_from_list"]], "remove_last_energy() (turbomoleio.core.control.control method)": [[2, "turbomoleio.core.control.Control.remove_last_energy"]], "remove_last_gradient() (turbomoleio.core.control.control method)": [[2, "turbomoleio.core.control.Control.remove_last_gradient"]], "sdg() (in module turbomoleio.core.control)": [[2, "turbomoleio.core.control.sdg"]], "sdg() (turbomoleio.core.datagroups.datagroups method)": [[2, "turbomoleio.core.datagroups.DataGroups.sdg"]], "sdgo() (in module turbomoleio.core.control)": [[2, "turbomoleio.core.control.sdgo"]], "sdgo() (turbomoleio.core.datagroups.datagroups method)": [[2, "turbomoleio.core.datagroups.DataGroups.sdgo"]], "set_disp() (turbomoleio.core.control.control method)": [[2, "turbomoleio.core.control.Control.set_disp"]], "show_data_group() (turbomoleio.core.datagroups.datagroups method)": [[2, "turbomoleio.core.datagroups.DataGroups.show_data_group"]], "show_data_group_option() (turbomoleio.core.datagroups.datagroups method)": [[2, "turbomoleio.core.datagroups.DataGroups.show_data_group_option"]], "show_subfile_fname() (turbomoleio.core.datagroups.datagroups method)": [[2, "turbomoleio.core.datagroups.DataGroups.show_subfile_fname"]], "split_string_to_dg_list() (in module turbomoleio.core.datagroups)": [[2, "turbomoleio.core.datagroups.split_string_to_dg_list"]], "structure (turbomoleio.core.periodic.periodicsystem property)": [[2, "turbomoleio.core.periodic.PeriodicSystem.structure"]], "to_coord_file() (turbomoleio.core.base.basesystem method)": [[2, "turbomoleio.core.base.BaseSystem.to_coord_file"]], "to_coord_string() (turbomoleio.core.base.basesystem method)": [[2, "turbomoleio.core.base.BaseSystem.to_coord_string"]], "to_coord_string() (turbomoleio.core.molecule.moleculesystem method)": [[2, "turbomoleio.core.molecule.MoleculeSystem.to_coord_string"]], "to_coord_string() (turbomoleio.core.periodic.periodicsystem method)": [[2, "turbomoleio.core.periodic.PeriodicSystem.to_coord_string"]], "to_datagroup() (turbomoleio.core.control.shells method)": [[2, "turbomoleio.core.control.Shells.to_datagroup"]], "to_file() (turbomoleio.core.base.basesystem method)": [[2, "turbomoleio.core.base.BaseSystem.to_file"]], "to_file() (turbomoleio.core.control.control method)": [[2, "turbomoleio.core.control.Control.to_file"]], "to_file() (turbomoleio.core.datagroups.datagroups method)": [[2, "turbomoleio.core.datagroups.DataGroups.to_file"]], "to_string() (turbomoleio.core.molecule.internaldefinition method)": [[2, "turbomoleio.core.molecule.InternalDefinition.to_string"]], "total_electrons (turbomoleio.core.control.shells property)": [[2, "turbomoleio.core.control.Shells.total_electrons"]], "turbomoleio.core": [[2, "module-turbomoleio.core"]], "turbomoleio.core.base": [[2, "module-turbomoleio.core.base"]], "turbomoleio.core.control": [[2, "module-turbomoleio.core.control"]], "turbomoleio.core.datagroups": [[2, "module-turbomoleio.core.datagroups"]], "turbomoleio.core.molecule": [[2, "module-turbomoleio.core.molecule"]], "turbomoleio.core.periodic": [[2, "module-turbomoleio.core.periodic"]], "turbomoleio.core.symmetry": [[2, "module-turbomoleio.core.symmetry"]], "turbomoleio.core.utils": [[2, "module-turbomoleio.core.utils"]], "testcontrol (class in turbomoleio.core.tests.test_control)": [[3, "turbomoleio.core.tests.test_control.TestControl"]], "testdatagroupfunctions (class in turbomoleio.core.tests.test_control)": [[3, "turbomoleio.core.tests.test_control.TestDatagroupFunctions"]], "testenergy (class in turbomoleio.core.tests.test_control)": [[3, "turbomoleio.core.tests.test_control.TestEnergy"]], "testgetversion (class in turbomoleio.core.tests.test_utils)": [[3, "turbomoleio.core.tests.test_utils.TestGetVersion"]], "testgradient (class in turbomoleio.core.tests.test_control)": [[3, "turbomoleio.core.tests.test_control.TestGradient"]], "testinternaldefinition (class in turbomoleio.core.tests.test_molecule)": [[3, "turbomoleio.core.tests.test_molecule.TestInternalDefinition"]], "testmoleculesystem (class in turbomoleio.core.tests.test_molecule)": [[3, "turbomoleio.core.tests.test_molecule.TestMoleculeSystem"]], "testperiodicsystem (class in turbomoleio.core.tests.test_periodic)": [[3, "turbomoleio.core.tests.test_periodic.TestPeriodicSystem"]], "testshells (class in turbomoleio.core.tests.test_control)": [[3, "turbomoleio.core.tests.test_control.TestShells"]], "check_dg() (in module turbomoleio.core.tests.test_molecule)": [[3, "turbomoleio.core.tests.test_molecule.check_dg"]], "check_equivalent_dg() (in module turbomoleio.core.tests.test_control)": [[3, "turbomoleio.core.tests.test_control.check_equivalent_dg"]], "check_user_defined_bonds_dg() (in module turbomoleio.core.tests.test_molecule)": [[3, "turbomoleio.core.tests.test_molecule.check_user_defined_bonds_dg"]], "pytestmark (turbomoleio.core.tests.test_control.testdatagroupfunctions attribute)": [[3, "turbomoleio.core.tests.test_control.TestDatagroupFunctions.pytestmark"]], "pytestmark (turbomoleio.core.tests.test_molecule.testinternaldefinition attribute)": [[3, "turbomoleio.core.tests.test_molecule.TestInternalDefinition.pytestmark"]], "test_v72() (turbomoleio.core.tests.test_utils.testgetversion method)": [[3, "turbomoleio.core.tests.test_utils.TestGetVersion.test_V72"]], "test_v731() (turbomoleio.core.tests.test_utils.testgetversion method)": [[3, "turbomoleio.core.tests.test_utils.TestGetVersion.test_V731"]], "test_v741() (turbomoleio.core.tests.test_utils.testgetversion method)": [[3, "turbomoleio.core.tests.test_utils.TestGetVersion.test_V741"]], "test_v751() (turbomoleio.core.tests.test_utils.testgetversion method)": [[3, "turbomoleio.core.tests.test_utils.TestGetVersion.test_V751"]], "test_add_bond_angle() (turbomoleio.core.tests.test_molecule.testmoleculesystem method)": [[3, "turbomoleio.core.tests.test_molecule.TestMoleculeSystem.test_add_bond_angle"]], "test_add_cosmo() (turbomoleio.core.tests.test_control.testcontrol method)": [[3, "turbomoleio.core.tests.test_control.TestControl.test_add_cosmo"]], "test_add_dihedral() (turbomoleio.core.tests.test_molecule.testmoleculesystem method)": [[3, "turbomoleio.core.tests.test_molecule.TestMoleculeSystem.test_add_dihedral"]], "test_add_distance() (turbomoleio.core.tests.test_molecule.testmoleculesystem method)": [[3, "turbomoleio.core.tests.test_molecule.TestMoleculeSystem.test_add_distance"]], "test_adg() (turbomoleio.core.tests.test_control.testdatagroupfunctions method)": [[3, "turbomoleio.core.tests.test_control.TestDatagroupFunctions.test_adg"]], "test_bond_angle() (turbomoleio.core.tests.test_molecule.testinternaldefinition method)": [[3, "turbomoleio.core.tests.test_molecule.TestInternalDefinition.test_bond_angle"]], "test_cdg() (turbomoleio.core.tests.test_control.testdatagroupfunctions method)": [[3, "turbomoleio.core.tests.test_control.TestDatagroupFunctions.test_cdg"]], "test_check_index() (turbomoleio.core.tests.test_molecule.testmoleculesystem method)": [[3, "turbomoleio.core.tests.test_molecule.TestMoleculeSystem.test_check_index"]], "test_cleanup() (in module turbomoleio.core.tests.test_datagroups)": [[3, "turbomoleio.core.tests.test_datagroups.test_cleanup"]], "test_closed() (turbomoleio.core.tests.test_control.testshells method)": [[3, "turbomoleio.core.tests.test_control.TestShells.test_closed"]], "test_collinear_bending_angle() (turbomoleio.core.tests.test_molecule.testinternaldefinition method)": [[3, "turbomoleio.core.tests.test_molecule.TestInternalDefinition.test_collinear_bending_angle"]], "test_compare() (in module turbomoleio.core.tests.test_datagroups)": [[3, "turbomoleio.core.tests.test_datagroups.test_compare"]], "test_compare_datagroup_string() (in module turbomoleio.core.tests.test_datagroups)": [[3, "turbomoleio.core.tests.test_datagroups.test_compare_datagroup_string"]], "test_cpc() (turbomoleio.core.tests.test_control.testcontrol method)": [[3, "turbomoleio.core.tests.test_control.TestControl.test_cpc"]], "test_cpc() (turbomoleio.core.tests.test_control.testdatagroupfunctions method)": [[3, "turbomoleio.core.tests.test_control.TestDatagroupFunctions.test_cpc"]], "test_datagroups() (in module turbomoleio.core.tests.test_datagroups)": [[3, "turbomoleio.core.tests.test_datagroups.test_datagroups"]], "test_dihedral_angle() (turbomoleio.core.tests.test_molecule.testinternaldefinition method)": [[3, "turbomoleio.core.tests.test_molecule.TestInternalDefinition.test_dihedral_angle"]], "test_disordered() (turbomoleio.core.tests.test_molecule.testmoleculesystem method)": [[3, "turbomoleio.core.tests.test_molecule.TestMoleculeSystem.test_disordered"]], "test_disp() (turbomoleio.core.tests.test_control.testcontrol method)": [[3, "turbomoleio.core.tests.test_control.TestControl.test_disp"]], "test_distance() (turbomoleio.core.tests.test_molecule.testinternaldefinition method)": [[3, "turbomoleio.core.tests.test_molecule.TestInternalDefinition.test_distance"]], "test_dummy_atoms() (turbomoleio.core.tests.test_molecule.testmoleculesystem method)": [[3, "turbomoleio.core.tests.test_molecule.TestMoleculeSystem.test_dummy_atoms"]], "test_empty() (in module turbomoleio.core.tests.test_datagroups)": [[3, "turbomoleio.core.tests.test_datagroups.test_empty"]], "test_empty_gradient() (turbomoleio.core.tests.test_control.testgradient method)": [[3, "turbomoleio.core.tests.test_control.TestGradient.test_empty_gradient"]], "test_energy() (turbomoleio.core.tests.test_control.testcontrol method)": [[3, "turbomoleio.core.tests.test_control.TestControl.test_energy"]], "test_energy_mp2() (turbomoleio.core.tests.test_control.testenergy method)": [[3, "turbomoleio.core.tests.test_control.TestEnergy.test_energy_mp2"]], "test_energy_scf() (turbomoleio.core.tests.test_control.testenergy method)": [[3, "turbomoleio.core.tests.test_control.TestEnergy.test_energy_scf"]], "test_fail_parse() (turbomoleio.core.tests.test_control.testshells method)": [[3, "turbomoleio.core.tests.test_control.TestShells.test_fail_parse"]], "test_fail_parsing() (turbomoleio.core.tests.test_control.testgradient method)": [[3, "turbomoleio.core.tests.test_control.TestGradient.test_fail_parsing"]], "test_fractional() (turbomoleio.core.tests.test_control.testshells method)": [[3, "turbomoleio.core.tests.test_control.TestShells.test_fractional"]], "test_from_file() (turbomoleio.core.tests.test_control.testcontrol method)": [[3, "turbomoleio.core.tests.test_control.TestControl.test_from_file"]], "test_from_metric() (turbomoleio.core.tests.test_control.testcontrol method)": [[3, "turbomoleio.core.tests.test_control.TestControl.test_from_metric"]], "test_from_string() (turbomoleio.core.tests.test_molecule.testinternaldefinition method)": [[3, "turbomoleio.core.tests.test_molecule.TestInternalDefinition.test_from_string"]], "test_from_string() (turbomoleio.core.tests.test_molecule.testmoleculesystem method)": [[3, "turbomoleio.core.tests.test_molecule.TestMoleculeSystem.test_from_string"]], "test_get_charge() (turbomoleio.core.tests.test_control.testcontrol method)": [[3, "turbomoleio.core.tests.test_control.TestControl.test_get_charge"]], "test_get_shells() (turbomoleio.core.tests.test_control.testcontrol method)": [[3, "turbomoleio.core.tests.test_control.TestControl.test_get_shells"]], "test_get_subfiles_list() (turbomoleio.core.tests.test_control.testcontrol method)": [[3, "turbomoleio.core.tests.test_control.TestControl.test_get_subfiles_list"]], "test_gradient() (turbomoleio.core.tests.test_control.testcontrol method)": [[3, "turbomoleio.core.tests.test_control.TestControl.test_gradient"]], "test_gradient() (turbomoleio.core.tests.test_control.testgradient method)": [[3, "turbomoleio.core.tests.test_control.TestGradient.test_gradient"]], "test_inverse_distance() (turbomoleio.core.tests.test_molecule.testinternaldefinition method)": [[3, "turbomoleio.core.tests.test_molecule.TestInternalDefinition.test_inverse_distance"]], "test_is_uhf() (turbomoleio.core.tests.test_control.testcontrol method)": [[3, "turbomoleio.core.tests.test_control.TestControl.test_is_uhf"]], "test_kdg() (turbomoleio.core.tests.test_control.testdatagroupfunctions method)": [[3, "turbomoleio.core.tests.test_control.TestDatagroupFunctions.test_kdg"]], "test_mdgo() (turbomoleio.core.tests.test_control.testdatagroupfunctions method)": [[3, "turbomoleio.core.tests.test_control.TestDatagroupFunctions.test_mdgo"]], "test_modify_data_group_options() (in module turbomoleio.core.tests.test_datagroups)": [[3, "turbomoleio.core.tests.test_datagroups.test_modify_data_group_options"]], "test_out_of_plane_angle() (turbomoleio.core.tests.test_molecule.testinternaldefinition method)": [[3, "turbomoleio.core.tests.test_molecule.TestInternalDefinition.test_out_of_plane_angle"]], "test_periodic() (turbomoleio.core.tests.test_control.testgradient method)": [[3, "turbomoleio.core.tests.test_control.TestGradient.test_periodic"]], "test_periodic_2d() (turbomoleio.core.tests.test_periodic.testperiodicsystem method)": [[3, "turbomoleio.core.tests.test_periodic.TestPeriodicSystem.test_periodic_2d"]], "test_periodic_3d() (turbomoleio.core.tests.test_periodic.testperiodicsystem method)": [[3, "turbomoleio.core.tests.test_periodic.TestPeriodicSystem.test_periodic_3d"]], "test_periodic_wrong_rotation() (turbomoleio.core.tests.test_periodic.testperiodicsystem method)": [[3, "turbomoleio.core.tests.test_periodic.TestPeriodicSystem.test_periodic_wrong_rotation"]], "test_perpendicular_bending_angle() (turbomoleio.core.tests.test_molecule.testinternaldefinition method)": [[3, "turbomoleio.core.tests.test_molecule.TestInternalDefinition.test_perpendicular_bending_angle"]], "test_read_periodic_2d() (turbomoleio.core.tests.test_periodic.testperiodicsystem method)": [[3, "turbomoleio.core.tests.test_periodic.TestPeriodicSystem.test_read_periodic_2d"]], "test_remove_comments() (in module turbomoleio.core.tests.test_datagroups)": [[3, "turbomoleio.core.tests.test_datagroups.test_remove_comments"]], "test_remove_dg_from_list() (in module turbomoleio.core.tests.test_datagroups)": [[3, "turbomoleio.core.tests.test_datagroups.test_remove_dg_from_list"]], "test_remove_energy() (turbomoleio.core.tests.test_control.testcontrol method)": [[3, "turbomoleio.core.tests.test_control.TestControl.test_remove_energy"]], "test_remove_energy_in_control() (turbomoleio.core.tests.test_control.testcontrol method)": [[3, "turbomoleio.core.tests.test_control.TestControl.test_remove_energy_in_control"]], "test_remove_gradient() (turbomoleio.core.tests.test_control.testcontrol method)": [[3, "turbomoleio.core.tests.test_control.TestControl.test_remove_gradient"]], "test_remove_gradient_in_control() (turbomoleio.core.tests.test_control.testcontrol method)": [[3, "turbomoleio.core.tests.test_control.TestControl.test_remove_gradient_in_control"]], "test_sdg() (turbomoleio.core.tests.test_control.testdatagroupfunctions method)": [[3, "turbomoleio.core.tests.test_control.TestDatagroupFunctions.test_sdg"]], "test_sdg_subfiles() (in module turbomoleio.core.tests.test_datagroups)": [[3, "turbomoleio.core.tests.test_datagroups.test_sdg_subfiles"]], "test_sdgo() (turbomoleio.core.tests.test_control.testdatagroupfunctions method)": [[3, "turbomoleio.core.tests.test_control.TestDatagroupFunctions.test_sdgo"]], "test_show_data_group_option() (in module turbomoleio.core.tests.test_datagroups)": [[3, "turbomoleio.core.tests.test_datagroups.test_show_data_group_option"]], "test_show_subfile_fname() (in module turbomoleio.core.tests.test_datagroups)": [[3, "turbomoleio.core.tests.test_datagroups.test_show_subfile_fname"]], "test_split_string_to_dg_list() (in module turbomoleio.core.tests.test_datagroups)": [[3, "turbomoleio.core.tests.test_datagroups.test_split_string_to_dg_list"]], "test_to_coord_string() (turbomoleio.core.tests.test_molecule.testmoleculesystem method)": [[3, "turbomoleio.core.tests.test_molecule.TestMoleculeSystem.test_to_coord_string"]], "test_to_file() (turbomoleio.core.tests.test_molecule.testmoleculesystem method)": [[3, "turbomoleio.core.tests.test_molecule.TestMoleculeSystem.test_to_file"]], "test_uhf() (turbomoleio.core.tests.test_control.testshells method)": [[3, "turbomoleio.core.tests.test_control.TestShells.test_uhf"]], "turbomoleio.core.tests": [[3, "module-turbomoleio.core.tests"]], "turbomoleio.core.tests.test_control": [[3, "module-turbomoleio.core.tests.test_control"]], "turbomoleio.core.tests.test_datagroups": [[3, "module-turbomoleio.core.tests.test_datagroups"]], "turbomoleio.core.tests.test_molecule": [[3, "module-turbomoleio.core.tests.test_molecule"]], "turbomoleio.core.tests.test_periodic": [[3, "module-turbomoleio.core.tests.test_periodic"]], "turbomoleio.core.tests.test_utils": [[3, "module-turbomoleio.core.tests.test_utils"]], "defineerror": [[4, "turbomoleio.input.define.DefineError"]], "defineexpecterror": [[4, "turbomoleio.input.define.DefineExpectError"]], "defineirederror": [[4, "turbomoleio.input.define.DefineIredError"]], "defineparametererror": [[4, "turbomoleio.input.define.DefineParameterError"]], "definerunner (class in turbomoleio.input.define)": [[4, "turbomoleio.input.define.DefineRunner"]], "parametersvalidationerror": [[4, "turbomoleio.input.utils.ParametersValidationError"]], "unsupporteddefinestateerror": [[4, "turbomoleio.input.define.UnsupportedDefineStateError"]], "dump_command_file() (turbomoleio.input.define.definerunner method)": [[4, "turbomoleio.input.define.DefineRunner.dump_command_file"]], "ex_setter() (in module turbomoleio.input.utils)": [[4, "turbomoleio.input.utils.ex_setter"]], "get_define_template() (in module turbomoleio.input.utils)": [[4, "turbomoleio.input.utils.get_define_template"]], "run_full() (turbomoleio.input.define.definerunner method)": [[4, "turbomoleio.input.define.DefineRunner.run_full"]], "run_generate_mo_files() (turbomoleio.input.define.definerunner method)": [[4, "turbomoleio.input.define.DefineRunner.run_generate_mo_files"]], "run_update_internal_coords() (turbomoleio.input.define.definerunner method)": [[4, "turbomoleio.input.define.DefineRunner.run_update_internal_coords"]], "schema_define_params (in module turbomoleio.input.utils)": [[4, "turbomoleio.input.utils.schema_define_params"]], "turbomoleio.input": [[4, "module-turbomoleio.input"]], "turbomoleio.input.define": [[4, "module-turbomoleio.input.define"]], "turbomoleio.input.utils": [[4, "module-turbomoleio.input.utils"]], "validate_parameters() (in module turbomoleio.input.utils)": [[4, "turbomoleio.input.utils.validate_parameters"]], "turbomoleio.input.templates": [[5, "module-turbomoleio.input.templates"]], "testdefinerunner (class in turbomoleio.input.tests.test_define)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner"]], "testexceptions (class in turbomoleio.input.tests.test_define)": [[6, "turbomoleio.input.tests.test_define.TestExceptions"]], "assert_sendline_calls() (turbomoleio.input.tests.test_define.testdefinerunner static method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.assert_sendline_calls"]], "assert_sendline_has_calls() (turbomoleio.input.tests.test_define.testdefinerunner static method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.assert_sendline_has_calls"]], "dr_data() (in module turbomoleio.input.tests.test_define)": [[6, "turbomoleio.input.tests.test_define.dr_data"]], "test_add_atomic_coordinates_from_file() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_add_atomic_coordinates_from_file"]], "test_add_atomic_coordinates_from_file_cartesian() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_add_atomic_coordinates_from_file_cartesian"]], "test_add_cosmo() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_add_cosmo"]], "test_close() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_close"]], "test_copy_mo_files_ab_mos() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_copy_mo_files_ab_mos"]], "test_copy_mo_files_alpha_beta() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_copy_mo_files_alpha_beta"]], "test_copy_mo_files_error() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_copy_mo_files_error"]], "test_copy_mo_files_mo() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_copy_mo_files_mo"]], "test_create() (turbomoleio.input.tests.test_define.testexceptions method)": [[6, "turbomoleio.input.tests.test_define.TestExceptions.test_create"]], "test_define_basis_sets() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_define_basis_sets"]], "test_define_core_potentials() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_define_core_potentials"]], "test_define_symmetry() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_define_symmetry"]], "test_define_symmetry_error() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_define_symmetry_error"]], "test_determine_symmetry() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_determine_symmetry"]], "test_determine_symmetry_eps() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_determine_symmetry_eps"]], "test_dump_command_file() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_dump_command_file"]], "test_excited_state_menu_error_not_activated() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_excited_state_menu_error_not_activated"]], "test_excited_state_menu_frequency() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_excited_state_menu_frequency"]], "test_excited_state_menu_irrep() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_excited_state_menu_irrep"]], "test_excited_state_menu_irrep_wrong_sym() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_excited_state_menu_irrep_wrong_sym"]], "test_excited_state_menu_polly() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_excited_state_menu_polly"]], "test_excited_state_menu_rpas() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_excited_state_menu_rpas"]], "test_excited_state_menu_urpa() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_excited_state_menu_urpa"]], "test_excited_state_menu_urpa_error() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_excited_state_menu_urpa_error"]], "test_excited_state_menu_wrong_ex_method() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_excited_state_menu_wrong_ex_method"]], "test_excited_state_menu_wrong_menu() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_excited_state_menu_wrong_menu"]], "test_existing_coordinates() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_existing_coordinates"]], "test_existing_coordinates_cartesian() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_existing_coordinates_cartesian"]], "test_existing_coordinates_error() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_existing_coordinates_error"]], "test_existing_coordinates_no_update() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_existing_coordinates_no_update"]], "test_existing_coordinates_unsupported() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_existing_coordinates_unsupported"]], "test_expect() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_expect"]], "test_expect_raise_eof() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_expect_raise_eof"]], "test_expect_raise_timeout() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_expect_raise_timeout"]], "test_extended_hueckel_theory_menu_charge() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_extended_hueckel_theory_menu_charge"]], "test_extended_hueckel_theory_menu_default() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_extended_hueckel_theory_menu_default"]], "test_extended_hueckel_theory_menu_error() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_extended_hueckel_theory_menu_error"]], "test_extended_hueckel_theory_menu_nocharge() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_extended_hueckel_theory_menu_nocharge"]], "test_extended_hueckel_theory_menu_unpaired() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_extended_hueckel_theory_menu_unpaired"]], "test_general_menu_ccsdt() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_general_menu_ccsdt"]], "test_general_menu_dft() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_general_menu_dft"]], "test_general_menu_hf() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_general_menu_hf"]], "test_general_menu_wrong_method() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_general_menu_wrong_method"]], "test_generate_internal_coordinates() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_generate_internal_coordinates"]], "test_generate_internal_coordinates_error() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_generate_internal_coordinates_error"]], "test_geometry_menu_copymo() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_geometry_menu_copymo"]], "test_geometry_menu_incompatibility_1() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_geometry_menu_incompatibility_1"]], "test_geometry_menu_incompatibility_2() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_geometry_menu_incompatibility_2"]], "test_geometry_menu_new_coords_1() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_geometry_menu_new_coords_1"]], "test_geometry_menu_new_coords_2() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_geometry_menu_new_coords_2"]], "test_geometry_menu_new_coords_3() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_geometry_menu_new_coords_3"]], "test_geometry_menu_new_coords_4() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_geometry_menu_new_coords_4"]], "test_geometry_menu_no_new_coords() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_geometry_menu_no_new_coords"]], "test_get_bin_path() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_get_bin_path"]], "test_get_define_template() (in module turbomoleio.input.tests.test_utils)": [[6, "turbomoleio.input.tests.test_utils.test_get_define_template"]], "test_go_to_general_menu() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_go_to_general_menu"]], "test_init() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_init"]], "test_initialize_control_1() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_initialize_control_1"]], "test_initialize_control_2() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_initialize_control_2"]], "test_initialize_control_incompatibility() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_initialize_control_incompatibility"]], "test_is_alive() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_is_alive"]], "test_postprocess() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_postprocess"]], "test_quit_general_menu() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_quit_general_menu"]], "test_run_full_1() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_run_full_1"]], "test_run_full_2() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_run_full_2"]], "test_run_generate_mo_files() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_run_generate_mo_files"]], "test_run_generate_mo_files_sym() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_run_generate_mo_files_sym"]], "test_run_update_internal_coords() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_run_update_internal_coords"]], "test_run_update_internal_coords_error() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_run_update_internal_coords_error"]], "test_sendline() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_sendline"]], "test_set_basis() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_set_basis"]], "test_set_basis_error() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_set_basis_error"]], "test_set_basis_error_2() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_set_basis_error_2"]], "test_set_basis_error_3() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_set_basis_error_3"]], "test_set_dft_options_no_dft() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_set_dft_options_no_dft"]], "test_set_dft_options_use_dft() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_set_dft_options_use_dft"]], "test_set_dft_options_wrong_xc() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_set_dft_options_wrong_xc"]], "test_set_ecp_error() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_set_ecp_error"]], "test_set_ecp_error_2() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_set_ecp_error_2"]], "test_set_ecp_error_3() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_set_ecp_error_3"]], "test_set_metric() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_set_metric"]], "test_set_mo_from_control_file() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_set_mo_from_control_file"]], "test_set_mo_from_control_file_2() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_set_mo_from_control_file_2"]], "test_set_mo_from_control_file_error() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_set_mo_from_control_file_error"]], "test_set_mo_from_control_file_longpath() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_set_mo_from_control_file_longpath"]], "test_set_mp2_options() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_set_mp2_options"]], "test_set_mp2_options_f12() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_set_mp2_options_f12"]], "test_set_mp2_options_geoopt() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_set_mp2_options_geoopt"]], "test_set_mp2_options_mp2() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_set_mp2_options_mp2"]], "test_set_mp2_options_mp2_error() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_set_mp2_options_mp2_error"]], "test_set_ri_state() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_set_ri_state"]], "test_set_ri_state_marij() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_set_ri_state_marij"]], "test_set_scf_options() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_set_scf_options"]], "test_skip_atomic_attribute_menu() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_skip_atomic_attribute_menu"]], "test_skip_atomic_attribute_menu_error() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_skip_atomic_attribute_menu_error"]], "test_skip_atomic_attribute_menu_internal() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_skip_atomic_attribute_menu_internal"]], "test_switch_to_atomic_attribute_menu() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_switch_to_atomic_attribute_menu"]], "test_switch_to_atomic_attribute_menu_internal() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_switch_to_atomic_attribute_menu_internal"]], "test_switch_to_atomic_attribute_menu_internal_error() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_switch_to_atomic_attribute_menu_internal_error"]], "test_switch_to_molecular_orbital_definition_menu() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_switch_to_molecular_orbital_definition_menu"]], "test_switch_to_scf_menu() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_switch_to_scf_menu"]], "test_validate_parameters() (in module turbomoleio.input.tests.test_utils)": [[6, "turbomoleio.input.tests.test_utils.test_validate_parameters"]], "turbomoleio.input.tests": [[6, "module-turbomoleio.input.tests"]], "turbomoleio.input.tests.test_define": [[6, "module-turbomoleio.input.tests.test_define"]], "turbomoleio.input.tests.test_utils": [[6, "module-turbomoleio.input.tests.test_utils"]], "aoforcenumericalintegrationdata (class in turbomoleio.output.data)": [[7, "turbomoleio.output.data.AoforceNumericalIntegrationData"]], "aoforceoutput (class in turbomoleio.output.files)": [[7, "turbomoleio.output.files.AoforceOutput"]], "aoforcerotationaldata (class in turbomoleio.output.data)": [[7, "turbomoleio.output.data.AoforceRotationalData"]], "aoforcevibrationaldata (class in turbomoleio.output.data)": [[7, "turbomoleio.output.data.AoforceVibrationalData"]], "basedata (class in turbomoleio.output.data)": [[7, "turbomoleio.output.data.BaseData"]], "basisdata (class in turbomoleio.output.data)": [[7, "turbomoleio.output.data.BasisData"]], "cosmodata (class in turbomoleio.output.data)": [[7, "turbomoleio.output.data.CosmoData"]], "dftdata (class in turbomoleio.output.data)": [[7, "turbomoleio.output.data.DFTData"]], "dispersioncorrectiondata (class in turbomoleio.output.data)": [[7, "turbomoleio.output.data.DispersionCorrectionData"]], "egradoutput (class in turbomoleio.output.files)": [[7, "turbomoleio.output.files.EgradOutput"]], "eigeroutput (class in turbomoleio.output.states)": [[7, "turbomoleio.output.states.EigerOutput"]], "eigerrunner (class in turbomoleio.output.states)": [[7, "turbomoleio.output.states.EigerRunner"]], "electrostaticmomentsdata (class in turbomoleio.output.data)": [[7, "turbomoleio.output.data.ElectrostaticMomentsData"]], "escfdata (class in turbomoleio.output.data)": [[7, "turbomoleio.output.data.EscfData"]], "escfiterationdata (class in turbomoleio.output.data)": [[7, "turbomoleio.output.data.EscfIterationData"]], "escfonlyoutput (class in turbomoleio.output.files)": [[7, "turbomoleio.output.files.EscfOnlyOutput"]], "escfoutput (class in turbomoleio.output.files)": [[7, "turbomoleio.output.files.EscfOutput"]], "functionaldata (class in turbomoleio.output.data)": [[7, "turbomoleio.output.data.FunctionalData"]], "geometrydata (class in turbomoleio.output.data)": [[7, "turbomoleio.output.data.GeometryData"]], "gradoutput (class in turbomoleio.output.files)": [[7, "turbomoleio.output.files.GradOutput"]], "integraldata (class in turbomoleio.output.data)": [[7, "turbomoleio.output.data.IntegralData"]], "jobexoutput (class in turbomoleio.output.files)": [[7, "turbomoleio.output.files.JobexOutput"]], "mp2data (class in turbomoleio.output.data)": [[7, "turbomoleio.output.data.MP2Data"]], "mp2output (class in turbomoleio.output.files)": [[7, "turbomoleio.output.files.MP2Output"]], "mp2results (class in turbomoleio.output.data)": [[7, "turbomoleio.output.data.MP2Results"]], "parser (class in turbomoleio.output.parser)": [[7, "turbomoleio.output.parser.Parser"]], "periodicitydata (class in turbomoleio.output.data)": [[7, "turbomoleio.output.data.PeriodicityData"]], "relaxconvergencedata (class in turbomoleio.output.data)": [[7, "turbomoleio.output.data.RelaxConvergenceData"]], "relaxdata (class in turbomoleio.output.data)": [[7, "turbomoleio.output.data.RelaxData"]], "relaxgradientsdata (class in turbomoleio.output.data)": [[7, "turbomoleio.output.data.RelaxGradientsData"]], "relaxoutput (class in turbomoleio.output.files)": [[7, "turbomoleio.output.files.RelaxOutput"]], "ridata (class in turbomoleio.output.data)": [[7, "turbomoleio.output.data.RiData"]], "ricc2output (class in turbomoleio.output.files)": [[7, "turbomoleio.output.files.Ricc2Output"]], "rundata (class in turbomoleio.output.data)": [[7, "turbomoleio.output.data.RunData"]], "scfdata (class in turbomoleio.output.data)": [[7, "turbomoleio.output.data.ScfData"]], "scfenergiesdata (class in turbomoleio.output.data)": [[7, "turbomoleio.output.data.ScfEnergiesData"]], "scfiterationdata (class in turbomoleio.output.data)": [[7, "turbomoleio.output.data.ScfIterationData"]], "scfoutput (class in turbomoleio.output.files)": [[7, "turbomoleio.output.files.ScfOutput"]], "singleexcitation (class in turbomoleio.output.data)": [[7, "turbomoleio.output.data.SingleExcitation"]], "smearingdata (class in turbomoleio.output.data)": [[7, "turbomoleio.output.data.SmearingData"]], "spindata (class in turbomoleio.output.data)": [[7, "turbomoleio.output.data.SpinData"]], "state (class in turbomoleio.output.states)": [[7, "turbomoleio.output.states.State"]], "states (class in turbomoleio.output.states)": [[7, "turbomoleio.output.states.States"]], "statptdata (class in turbomoleio.output.data)": [[7, "turbomoleio.output.data.StatptData"]], "statptoutput (class in turbomoleio.output.files)": [[7, "turbomoleio.output.files.StatptOutput"]], "symmetrydata (class in turbomoleio.output.data)": [[7, "turbomoleio.output.data.SymmetryData"]], "turbomoledata (class in turbomoleio.output.data)": [[7, "turbomoleio.output.data.TurbomoleData"]], "all_done() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.all_done"]], "aoforce_analysis() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.aoforce_analysis"]], "aoforce_numerical_integration() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.aoforce_numerical_integration"]], "as_dict() (turbomoleio.output.states.state method)": [[7, "turbomoleio.output.states.State.as_dict"]], "as_dict() (turbomoleio.output.states.states method)": [[7, "turbomoleio.output.states.States.as_dict"]], "basis() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.basis"]], "centers() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.centers"]], "compare_states() (turbomoleio.output.states.eigeroutput method)": [[7, "turbomoleio.output.states.EigerOutput.compare_states"]], "convert_float() (in module turbomoleio.output.parser)": [[7, "turbomoleio.output.parser.convert_float"]], "convert_int() (in module turbomoleio.output.parser)": [[7, "turbomoleio.output.parser.convert_int"]], "convert_time_string() (in module turbomoleio.output.parser)": [[7, "turbomoleio.output.parser.convert_time_string"]], "coordinates() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.coordinates"]], "cosmo_header() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.cosmo_header"]], "cosmo_results() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.cosmo_results"]], "density_functional_data() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.density_functional_data"]], "dftd() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.dftd"]], "egrad_excited_state() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.egrad_excited_state"]], "eigenvalues (turbomoleio.output.states.states property)": [[7, "turbomoleio.output.states.States.eigenvalues"]], "electrostatic_moments() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.electrostatic_moments"]], "escf_excitations() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.escf_excitations"]], "escf_gs_total_en() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.escf_gs_total_en"]], "escf_iterations() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.escf_iterations"]], "fermi() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.fermi"]], "filter_states() (turbomoleio.output.states.states method)": [[7, "turbomoleio.output.states.States.filter_states"]], "from_dict() (turbomoleio.output.states.state class method)": [[7, "turbomoleio.output.states.State.from_dict"]], "from_file() (turbomoleio.output.data.basedata class method)": [[7, "turbomoleio.output.data.BaseData.from_file"]], "from_file() (turbomoleio.output.parser.parser class method)": [[7, "turbomoleio.output.parser.Parser.from_file"]], "from_file() (turbomoleio.output.states.eigeroutput class method)": [[7, "turbomoleio.output.states.EigerOutput.from_file"]], "from_file() (turbomoleio.output.states.states class method)": [[7, "turbomoleio.output.states.States.from_file"]], "from_parser() (turbomoleio.output.data.aoforcenumericalintegrationdata class method)": [[7, "turbomoleio.output.data.AoforceNumericalIntegrationData.from_parser"]], "from_parser() (turbomoleio.output.data.aoforcerotationaldata class method)": [[7, "turbomoleio.output.data.AoforceRotationalData.from_parser"]], "from_parser() (turbomoleio.output.data.aoforcevibrationaldata class method)": [[7, "turbomoleio.output.data.AoforceVibrationalData.from_parser"]], "from_parser() (turbomoleio.output.data.basedata class method)": [[7, "turbomoleio.output.data.BaseData.from_parser"]], "from_parser() (turbomoleio.output.data.basisdata class method)": [[7, "turbomoleio.output.data.BasisData.from_parser"]], "from_parser() (turbomoleio.output.data.cosmodata class method)": [[7, "turbomoleio.output.data.CosmoData.from_parser"]], "from_parser() (turbomoleio.output.data.dftdata class method)": [[7, "turbomoleio.output.data.DFTData.from_parser"]], "from_parser() (turbomoleio.output.data.dispersioncorrectiondata class method)": [[7, "turbomoleio.output.data.DispersionCorrectionData.from_parser"]], "from_parser() (turbomoleio.output.data.electrostaticmomentsdata class method)": [[7, "turbomoleio.output.data.ElectrostaticMomentsData.from_parser"]], "from_parser() (turbomoleio.output.data.escfdata class method)": [[7, "turbomoleio.output.data.EscfData.from_parser"]], "from_parser() (turbomoleio.output.data.escfiterationdata class method)": [[7, "turbomoleio.output.data.EscfIterationData.from_parser"]], "from_parser() (turbomoleio.output.data.functionaldata class method)": [[7, "turbomoleio.output.data.FunctionalData.from_parser"]], "from_parser() (turbomoleio.output.data.geometrydata class method)": [[7, "turbomoleio.output.data.GeometryData.from_parser"]], "from_parser() (turbomoleio.output.data.integraldata class method)": [[7, "turbomoleio.output.data.IntegralData.from_parser"]], "from_parser() (turbomoleio.output.data.mp2data class method)": [[7, "turbomoleio.output.data.MP2Data.from_parser"]], "from_parser() (turbomoleio.output.data.mp2results class method)": [[7, "turbomoleio.output.data.MP2Results.from_parser"]], "from_parser() (turbomoleio.output.data.periodicitydata class method)": [[7, "turbomoleio.output.data.PeriodicityData.from_parser"]], "from_parser() (turbomoleio.output.data.relaxconvergencedata class method)": [[7, "turbomoleio.output.data.RelaxConvergenceData.from_parser"]], "from_parser() (turbomoleio.output.data.relaxdata class method)": [[7, "turbomoleio.output.data.RelaxData.from_parser"]], "from_parser() (turbomoleio.output.data.relaxgradientsdata class method)": [[7, "turbomoleio.output.data.RelaxGradientsData.from_parser"]], "from_parser() (turbomoleio.output.data.ridata class method)": [[7, "turbomoleio.output.data.RiData.from_parser"]], "from_parser() (turbomoleio.output.data.rundata class method)": [[7, "turbomoleio.output.data.RunData.from_parser"]], "from_parser() (turbomoleio.output.data.scfdata class method)": [[7, "turbomoleio.output.data.ScfData.from_parser"]], "from_parser() (turbomoleio.output.data.scfenergiesdata class method)": [[7, "turbomoleio.output.data.ScfEnergiesData.from_parser"]], "from_parser() (turbomoleio.output.data.scfiterationdata class method)": [[7, "turbomoleio.output.data.ScfIterationData.from_parser"]], "from_parser() (turbomoleio.output.data.smearingdata class method)": [[7, "turbomoleio.output.data.SmearingData.from_parser"]], "from_parser() (turbomoleio.output.data.spindata class method)": [[7, "turbomoleio.output.data.SpinData.from_parser"]], "from_parser() (turbomoleio.output.data.statptdata class method)": [[7, "turbomoleio.output.data.StatptData.from_parser"]], "from_parser() (turbomoleio.output.data.symmetrydata class method)": [[7, "turbomoleio.output.data.SymmetryData.from_parser"]], "from_parser() (turbomoleio.output.data.turbomoledata class method)": [[7, "turbomoleio.output.data.TurbomoleData.from_parser"]], "from_parser() (turbomoleio.output.files.aoforceoutput class method)": [[7, "turbomoleio.output.files.AoforceOutput.from_parser"]], "from_parser() (turbomoleio.output.files.egradoutput class method)": [[7, "turbomoleio.output.files.EgradOutput.from_parser"]], "from_parser() (turbomoleio.output.files.escfonlyoutput class method)": [[7, "turbomoleio.output.files.EscfOnlyOutput.from_parser"]], "from_parser() (turbomoleio.output.files.escfoutput class method)": [[7, "turbomoleio.output.files.EscfOutput.from_parser"]], "from_parser() (turbomoleio.output.files.gradoutput class method)": [[7, "turbomoleio.output.files.GradOutput.from_parser"]], "from_parser() (turbomoleio.output.files.jobexoutput class method)": [[7, "turbomoleio.output.files.JobexOutput.from_parser"]], "from_parser() (turbomoleio.output.files.mp2output class method)": [[7, "turbomoleio.output.files.MP2Output.from_parser"]], "from_parser() (turbomoleio.output.files.relaxoutput class method)": [[7, "turbomoleio.output.files.RelaxOutput.from_parser"]], "from_parser() (turbomoleio.output.files.ricc2output class method)": [[7, "turbomoleio.output.files.Ricc2Output.from_parser"]], "from_parser() (turbomoleio.output.files.scfoutput class method)": [[7, "turbomoleio.output.files.ScfOutput.from_parser"]], "from_parser() (turbomoleio.output.files.statptoutput class method)": [[7, "turbomoleio.output.files.StatptOutput.from_parser"]], "from_string() (turbomoleio.output.data.basedata class method)": [[7, "turbomoleio.output.data.BaseData.from_string"]], "from_string() (turbomoleio.output.states.eigeroutput class method)": [[7, "turbomoleio.output.states.EigerOutput.from_string"]], "gap (turbomoleio.output.states.states property)": [[7, "turbomoleio.output.states.States.gap"]], "generate_lowest_filled_states() (turbomoleio.output.states.states method)": [[7, "turbomoleio.output.states.States.generate_lowest_filled_states"]], "get_eiger_output() (turbomoleio.output.states.eigerrunner method)": [[7, "turbomoleio.output.states.EigerRunner.get_eiger_output"]], "get_freqs_df() (turbomoleio.output.data.aoforcevibrationaldata method)": [[7, "turbomoleio.output.data.AoforceVibrationalData.get_freqs_df"]], "get_mos_energies() (in module turbomoleio.output.states)": [[7, "turbomoleio.output.states.get_mos_energies"]], "get_shells() (turbomoleio.output.states.states method)": [[7, "turbomoleio.output.states.States.get_shells"]], "get_split_jobex_parsers() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.get_split_jobex_parsers"]], "get_value() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.get_value"]], "gradient() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.gradient"]], "grep_line() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.grep_line"]], "has_fractional_occ (turbomoleio.output.states.state property)": [[7, "turbomoleio.output.states.State.has_fractional_occ"]], "has_fractional_occ (turbomoleio.output.states.states property)": [[7, "turbomoleio.output.states.States.has_fractional_occ"]], "has_hole (turbomoleio.output.states.states property)": [[7, "turbomoleio.output.states.States.has_hole"]], "header() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.header"]], "homo (turbomoleio.output.states.states property)": [[7, "turbomoleio.output.states.States.homo"]], "homo_index (turbomoleio.output.states.states property)": [[7, "turbomoleio.output.states.States.homo_index"]], "insert() (turbomoleio.output.states.states method)": [[7, "turbomoleio.output.states.States.insert"]], "integral() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.integral"]], "irrep_indices (turbomoleio.output.states.states property)": [[7, "turbomoleio.output.states.States.irrep_indices"]], "irreps (turbomoleio.output.states.states property)": [[7, "turbomoleio.output.states.States.irreps"]], "is_uhf (turbomoleio.output.states.states property)": [[7, "turbomoleio.output.states.States.is_uhf"]], "is_uhf() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.is_uhf"]], "lumo (turbomoleio.output.states.states property)": [[7, "turbomoleio.output.states.States.lumo"]], "lumo_index (turbomoleio.output.states.states property)": [[7, "turbomoleio.output.states.States.lumo_index"]], "max_occupation (turbomoleio.output.states.state property)": [[7, "turbomoleio.output.states.State.max_occupation"]], "mp2_data() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.mp2_data"]], "mp2_results() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.mp2_results"]], "n_negative_freqs() (turbomoleio.output.data.aoforcevibrationaldata method)": [[7, "turbomoleio.output.data.AoforceVibrationalData.n_negative_freqs"]], "n_positive_freqs() (turbomoleio.output.data.aoforcevibrationaldata method)": [[7, "turbomoleio.output.data.AoforceVibrationalData.n_positive_freqs"]], "n_states (turbomoleio.output.states.states property)": [[7, "turbomoleio.output.states.States.n_states"]], "n_zero_freqs() (turbomoleio.output.data.aoforcevibrationaldata method)": [[7, "turbomoleio.output.data.AoforceVibrationalData.n_zero_freqs"]], "occupations (turbomoleio.output.states.states property)": [[7, "turbomoleio.output.states.States.occupations"]], "periodicity_data() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.periodicity_data"]], "plot_energies() (turbomoleio.output.data.scfiterationdata method)": [[7, "turbomoleio.output.data.ScfIterationData.plot_energies"]], "pre_escf_run() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.pre_escf_run"]], "pre_scf_run() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.pre_scf_run"]], "rdgrad_memory() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.rdgrad_memory"]], "relax_conv_info() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.relax_conv_info"]], "relax_gradient_values() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.relax_gradient_values"]], "relax_info() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.relax_info"]], "rij_info() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.rij_info"]], "riper_scf_energies() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.riper_scf_energies"]], "run() (turbomoleio.output.states.eigerrunner method)": [[7, "turbomoleio.output.states.EigerRunner.run"]], "s2() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.s2"]], "scf_energies() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.scf_energies"]], "scf_iterations() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.scf_iterations"]], "spins (turbomoleio.output.states.states property)": [[7, "turbomoleio.output.states.States.spins"]], "statpt_info() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.statpt_info"]], "string (turbomoleio.output.parser.parser property)": [[7, "turbomoleio.output.parser.Parser.string"]], "symmetry() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.symmetry"]], "timings() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.timings"]], "to_file() (turbomoleio.output.states.eigerrunner method)": [[7, "turbomoleio.output.states.EigerRunner.to_file"]], "total_electrons (turbomoleio.output.states.states property)": [[7, "turbomoleio.output.states.States.total_electrons"]], "turbomoleio.output": [[7, "module-turbomoleio.output"]], "turbomoleio.output.data": [[7, "module-turbomoleio.output.data"]], "turbomoleio.output.files": [[7, "module-turbomoleio.output.files"]], "turbomoleio.output.parser": [[7, "module-turbomoleio.output.parser"]], "turbomoleio.output.states": [[7, "module-turbomoleio.output.states"]], "testfiles (class in turbomoleio.output.tests.test_files)": [[8, "turbomoleio.output.tests.test_files.TestFiles"]], "testfunctions (class in turbomoleio.output.tests.test_parser)": [[8, "turbomoleio.output.tests.test_parser.TestFunctions"]], "testparser (class in turbomoleio.output.tests.test_parser)": [[8, "turbomoleio.output.tests.test_parser.TestParser"]], "cls_dict_path() (in module turbomoleio.output.tests.test_files)": [[8, "turbomoleio.output.tests.test_files.cls_dict_path"]], "generate_files() (in module turbomoleio.output.tests.test_files)": [[8, "turbomoleio.output.tests.test_files.generate_files"]], "generate_files() (in module turbomoleio.output.tests.test_parser)": [[8, "turbomoleio.output.tests.test_parser.generate_files"]], "method() (in module turbomoleio.output.tests.test_parser)": [[8, "turbomoleio.output.tests.test_parser.method"]], "parser_and_dict() (in module turbomoleio.output.tests.test_parser)": [[8, "turbomoleio.output.tests.test_parser.parser_and_dict"]], "test_aoforcevibrationaldata() (in module turbomoleio.output.tests.test_data)": [[8, "turbomoleio.output.tests.test_data.test_AoforceVibrationalData"]], "test_scfiterationdata() (in module turbomoleio.output.tests.test_data)": [[8, "turbomoleio.output.tests.test_data.test_ScfIterationData"]], "test_closed() (in module turbomoleio.output.tests.test_states)": [[8, "turbomoleio.output.tests.test_states.test_closed"]], "test_convert_float() (turbomoleio.output.tests.test_parser.testfunctions method)": [[8, "turbomoleio.output.tests.test_parser.TestFunctions.test_convert_float"]], "test_convert_int() (turbomoleio.output.tests.test_parser.testfunctions method)": [[8, "turbomoleio.output.tests.test_parser.TestFunctions.test_convert_int"]], "test_convert_time_string() (turbomoleio.output.tests.test_parser.testfunctions method)": [[8, "turbomoleio.output.tests.test_parser.TestFunctions.test_convert_time_string"]], "test_eiger_runner() (in module turbomoleio.output.tests.test_states)": [[8, "turbomoleio.output.tests.test_states.test_eiger_runner"]], "test_error_homo() (in module turbomoleio.output.tests.test_states)": [[8, "turbomoleio.output.tests.test_states.test_error_homo"]], "test_fail_all_done_check() (turbomoleio.output.tests.test_parser.testparser method)": [[8, "turbomoleio.output.tests.test_parser.TestParser.test_fail_all_done_check"]], "test_get_split_jobex_parsers() (turbomoleio.output.tests.test_parser.testparser method)": [[8, "turbomoleio.output.tests.test_parser.TestParser.test_get_split_jobex_parsers"]], "test_get_value() (turbomoleio.output.tests.test_parser.testparser method)": [[8, "turbomoleio.output.tests.test_parser.TestParser.test_get_value"]], "test_grep_line() (turbomoleio.output.tests.test_parser.testparser method)": [[8, "turbomoleio.output.tests.test_parser.TestParser.test_grep_line"]], "test_hole() (in module turbomoleio.output.tests.test_states)": [[8, "turbomoleio.output.tests.test_states.test_hole"]], "test_no_empty_states() (in module turbomoleio.output.tests.test_states)": [[8, "turbomoleio.output.tests.test_states.test_no_empty_states"]], "test_parsing_failures() (in module turbomoleio.output.tests.test_states)": [[8, "turbomoleio.output.tests.test_states.test_parsing_failures"]], "test_properties() (turbomoleio.output.tests.test_files.testfiles method)": [[8, "turbomoleio.output.tests.test_files.TestFiles.test_properties"]], "test_properties() (turbomoleio.output.tests.test_parser.testparser method)": [[8, "turbomoleio.output.tests.test_parser.TestParser.test_properties"]], "test_state() (in module turbomoleio.output.tests.test_states)": [[8, "turbomoleio.output.tests.test_states.test_state"]], "test_str() (in module turbomoleio.output.tests.test_data)": [[8, "turbomoleio.output.tests.test_data.test_str"]], "test_uhf() (in module turbomoleio.output.tests.test_states)": [[8, "turbomoleio.output.tests.test_states.test_uhf"]], "turbomoleio.output.tests": [[8, "module-turbomoleio.output.tests"]], "turbomoleio.output.tests.test_data": [[8, "module-turbomoleio.output.tests.test_data"]], "turbomoleio.output.tests.test_files": [[8, "module-turbomoleio.output.tests.test_files"]], "turbomoleio.output.tests.test_parser": [[8, "module-turbomoleio.output.tests.test_parser"]], "turbomoleio.output.tests.test_states": [[8, "module-turbomoleio.output.tests.test_states"]], "itestconfig (class in turbomoleio.testfiles.utils)": [[9, "turbomoleio.testfiles.utils.ItestConfig"]], "itesterror": [[9, "turbomoleio.testfiles.utils.ItestError"]], "assert_msonable() (in module turbomoleio.testfiles.utils)": [[9, "turbomoleio.testfiles.utils.assert_MSONable"]], "assert_almost_equal() (in module turbomoleio.testfiles.utils)": [[9, "turbomoleio.testfiles.utils.assert_almost_equal"]], "compare_differences() (in module turbomoleio.testfiles.utils)": [[9, "turbomoleio.testfiles.utils.compare_differences"]], "define_timeout (turbomoleio.testfiles.utils.itestconfig attribute)": [[9, "turbomoleio.testfiles.utils.ItestConfig.define_timeout"]], "delete_tmp_dir (turbomoleio.testfiles.utils.itestconfig attribute)": [[9, "turbomoleio.testfiles.utils.ItestConfig.delete_tmp_dir"]], "dryrun (turbomoleio.testfiles.utils.itestconfig attribute)": [[9, "turbomoleio.testfiles.utils.ItestConfig.dryrun"]], "dryrun_fpath (turbomoleio.testfiles.utils.itestconfig attribute)": [[9, "turbomoleio.testfiles.utils.ItestConfig.dryrun_fpath"]], "dryrun_use_ref_control (turbomoleio.testfiles.utils.itestconfig attribute)": [[9, "turbomoleio.testfiles.utils.ItestConfig.dryrun_use_ref_control"]], "generate_control_for_test() (in module turbomoleio.testfiles.utils)": [[9, "turbomoleio.testfiles.utils.generate_control_for_test"]], "generate_ref (turbomoleio.testfiles.utils.itestconfig attribute)": [[9, "turbomoleio.testfiles.utils.ItestConfig.generate_ref"]], "generate_reference_out_parser_files() (in module turbomoleio.testfiles.utils)": [[9, "turbomoleio.testfiles.utils.generate_reference_out_parser_files"]], "generate_reference_output() (in module turbomoleio.testfiles.utils)": [[9, "turbomoleio.testfiles.utils.generate_reference_output"]], "get_control_filepath() (in module turbomoleio.testfiles.utils)": [[9, "turbomoleio.testfiles.utils.get_control_filepath"]], "get_control_integration() (in module turbomoleio.testfiles.utils)": [[9, "turbomoleio.testfiles.utils.get_control_integration"]], "get_sp() (in module turbomoleio.testfiles.utils)": [[9, "turbomoleio.testfiles.utils.get_sp"]], "get_tfp() (in module turbomoleio.testfiles.utils)": [[9, "turbomoleio.testfiles.utils.get_tfp"]], "gisnan() (in module turbomoleio.testfiles.utils)": [[9, "turbomoleio.testfiles.utils.gisnan"]], "has_matplotlib() (in module turbomoleio.testfiles.utils)": [[9, "turbomoleio.testfiles.utils.has_matplotlib"]], "run_itest() (in module turbomoleio.testfiles.utils)": [[9, "turbomoleio.testfiles.utils.run_itest"]], "temp_dir() (in module turbomoleio.testfiles.utils)": [[9, "turbomoleio.testfiles.utils.temp_dir"]], "tol (turbomoleio.testfiles.utils.itestconfig attribute)": [[9, "turbomoleio.testfiles.utils.ItestConfig.tol"]], "touch_file() (in module turbomoleio.testfiles.utils)": [[9, "turbomoleio.testfiles.utils.touch_file"]], "turbomoleio.testfiles": [[9, "module-turbomoleio.testfiles"]], "turbomoleio.testfiles.utils": [[9, "module-turbomoleio.testfiles.utils"]]}}) \ No newline at end of file +Search.setIndex({"docnames": ["api/modules", "api/turbomoleio", "api/turbomoleio.core", "api/turbomoleio.core.tests", "api/turbomoleio.input", "api/turbomoleio.input.templates", "api/turbomoleio.input.tests", "api/turbomoleio.output", "api/turbomoleio.output.tests", "api/turbomoleio.testfiles", "appendix", "bugs", "changelog", "coord", "datagroups", "definerunner", "developer/definerunner", "developer/introduction", "developer/parsing_logs", "developer/testing", "developer/versioning", "index", "license", "output_parsing"], "filenames": ["api/modules.rst", "api/turbomoleio.rst", "api/turbomoleio.core.rst", "api/turbomoleio.core.tests.rst", "api/turbomoleio.input.rst", "api/turbomoleio.input.templates.rst", "api/turbomoleio.input.tests.rst", "api/turbomoleio.output.rst", "api/turbomoleio.output.tests.rst", "api/turbomoleio.testfiles.rst", "appendix.rst", "bugs.rst", "changelog.rst", "coord.rst", "datagroups.rst", "definerunner.rst", "developer/definerunner.rst", "developer/introduction.rst", "developer/parsing_logs.rst", "developer/testing.rst", "developer/versioning.rst", "index.rst", "license.rst", "output_parsing.rst"], "titles": ["turbomoleio", "turbomoleio package", "turbomoleio.core package", "turbomoleio.core.tests package", "turbomoleio.input package", "turbomoleio.input.templates package", "turbomoleio.input.tests package", "turbomoleio.output package", "turbomoleio.output.tests package", "turbomoleio.testfiles package", "Appendix", "Reporting bugs", "Changelog", "The coord file", "The data group files", "Running define", "Define runner", "Contributing", "Output logs parsing", "Testing", "Versioning", "turbomoleio", "License", "Outputs parsing"], "terms": {"packag": [0, 10, 11, 12, 13, 15, 17, 18, 19, 20, 21, 22], "subpackag": 0, "core": [0, 1, 7, 13, 14, 16], "submodul": [0, 1], "base": [0, 1, 3, 4, 6, 7, 8, 9, 13, 14, 15, 16, 18, 19, 21, 22, 23], "modul": [0, 12, 14, 15, 16, 19, 20, 21, 23], "control": [0, 1, 3, 4, 7, 9, 12, 15, 16, 19, 21, 22, 23], "datagroup": [0, 1, 3, 7, 9, 12, 20, 21, 23], "molecul": [0, 1, 3, 7, 13, 15, 19, 21, 23], "period": [0, 1, 7, 12, 21, 23], "symmetri": [0, 1, 7, 14, 15, 23], "util": [0, 1, 6, 7, 15, 16, 19], "content": [0, 14, 22, 23], "input": [0, 1, 2, 7, 12, 14, 15, 16, 18, 19, 20, 21, 23], "defin": [0, 1, 2, 3, 5, 6, 7, 9, 12, 13, 14, 17, 19, 20, 21, 22], "output": [0, 1, 2, 4, 9, 12, 13, 14, 15, 20, 21, 22], "data": [0, 1, 2, 3, 8, 12, 13, 15, 16, 18, 21, 22], "file": [0, 1, 2, 4, 8, 9, 11, 12, 15, 16, 17, 18, 19, 20, 21, 22], "parser": [0, 1, 8, 9, 18, 19, 21, 23], "state": [0, 1, 2, 4, 14, 15, 21, 22], "testfil": [0, 1, 7, 8, 12, 18, 19], "test": [1, 2, 4, 7, 9, 15, 17, 21], "test_control": [1, 2], "test_datagroup": [1, 2], "test_molecul": [1, 2], "test_period": [1, 2], "test_util": [1, 2, 4], "basesystem": [1, 2], "coord_lin": [1, 2], "to_coord_fil": [1, 2], "to_coord_str": [1, 2], "to_fil": [1, 2, 7, 14], "get_coord_lin": [1, 2], "get_mol_and_indices_frozen": [1, 2], "add_cosmo": [1, 2, 16], "cpc": [1, 2, 14], "energi": [1, 2, 7, 14, 15, 18, 21, 23], "from_fil": [1, 2, 7, 13, 14, 18, 23], "from_metr": [1, 2], "get_charg": [1, 2, 14], "get_shel": [1, 2, 7, 14], "get_subfiles_list": [1, 2], "gradient": [1, 2, 7, 12, 14, 23], "is_uhf": [1, 2, 7], "remove_last_energi": [1, 2], "remove_last_gradi": [1, 2], "set_disp": [1, 2, 14, 16], "default": [1, 2, 4, 7, 9, 14, 15, 18, 19], "metric": [1, 2, 4, 15], "delta_": [1, 2], "from_str": [1, 2, 7, 18], "n_step": [1, 2, 7], "plot": [1, 2, 7, 14, 23], "last_grad_max": [1, 2], "last_grad_norm": [1, 2], "max_gradi": [1, 2], "norm": [1, 2, 7], "shell": [1, 2, 7, 14, 15], "as_dict": [1, 2, 7, 23], "from_dict": [1, 2, 7, 23], "irrep": [1, 2, 7, 15], "to_datagroup": [1, 2], "total_electron": [1, 2, 7], "adg": [1, 2, 14], "cdg": [1, 2, 9, 14, 15], "kdg": [1, 2, 14], "mdgo": [1, 2, 14], "sdg": [1, 2, 14], "sdgo": [1, 2, 14], "add_data_group": [1, 2, 14], "change_data_group": [1, 2, 14, 16], "compar": [1, 2, 3, 7, 8, 9, 18, 19], "empti": [1, 2, 7, 14, 15, 23], "kill_data_group": [1, 2, 14], "modify_data_group_opt": [1, 2, 14], "ndg": [1, 2], "number_of_data_group": [1, 2], "show_data_group": [1, 2, 14], "show_data_group_opt": [1, 2, 14], "show_subfile_fnam": [1, 2], "cleanup_str": [1, 2], "compare_datagroup_str": [1, 2], "remove_com": [1, 2], "remove_dg_from_list": [1, 2], "split_string_to_dg_list": [1, 2], "bondangl": [1, 2], "compute_valu": [1, 2], "coord_str": [1, 2], "coord_typ": [1, 2], "n_atom": [1, 2], "collinearbendingangl": [1, 2], "dihedralangl": [1, 2], "distanc": [1, 2, 7, 13, 15], "internaldefinit": [1, 2, 13], "get_subclass_from_str": [1, 2], "is_valid": [1, 2], "to_str": [1, 2], "inversedist": [1, 2], "moleculesystem": [1, 2, 13, 21], "add_bond_angl": [1, 2, 13], "add_dihedr": [1, 2], "add_dist": [1, 2, 13], "get_int_def_inconsist": [1, 2], "has_inconsist": [1, 2], "outofplaneangl": [1, 2], "perpendicularbendingangl": [1, 2], "periodicsystem": [1, 2, 12, 13], "structur": [1, 2, 3, 7, 9, 12, 13, 14, 18, 19, 21], "define_quit": [1, 2], "get_tm_vers": [1, 2], "templat": [1, 4, 6, 12, 15], "test_defin": [1, 4], "defineerror": [1, 4, 15, 16], "defineexpecterror": [1, 4, 15], "defineirederror": [1, 4], "defineparametererror": [1, 4], "definerunn": [1, 4, 6, 9, 16, 19, 21], "dump_command_fil": [1, 4], "run_ful": [1, 4, 15, 16], "run_generate_mo_fil": [1, 4, 15, 16], "run_update_internal_coord": [1, 4, 15, 16], "unsupporteddefinestateerror": [1, 4], "parametersvalidationerror": [1, 4], "ex_sett": [1, 4], "get_define_templ": [1, 4, 15], "schema_define_param": [1, 4, 16], "validate_paramet": [1, 4, 15], "test_data": [1, 7], "test_fil": [1, 7, 18], "test_pars": [1, 7, 18], "test_stat": [1, 7], "aoforcenumericalintegrationdata": [1, 7, 23], "from_pars": [1, 7, 18, 23], "aoforcerotationaldata": [1, 7, 23], "aoforcevibrationaldata": [1, 7, 23], "get_freqs_df": [1, 7], "n_negative_freq": [1, 7], "n_positive_freq": [1, 7], "n_zero_freq": [1, 7], "basedata": [1, 7, 9, 18], "basisdata": [1, 7, 23], "cosmodata": [1, 7, 23], "dftdata": [1, 7, 23], "dispersioncorrectiondata": [1, 7, 23], "electrostaticmomentsdata": [1, 7, 23], "escfdata": [1, 7, 23], "escfiterationdata": [1, 7, 23], "functionaldata": [1, 7, 23], "geometrydata": [1, 7, 23], "integraldata": [1, 7, 23], "mp2data": [1, 7, 23], "mp2result": [1, 7, 23], "periodicitydata": [1, 7, 23], "relaxconvergencedata": [1, 7, 23], "relaxdata": [1, 7, 23], "relaxgradientsdata": [1, 7, 23], "ridata": [1, 7, 23], "rundata": [1, 7, 23], "scfdata": [1, 7, 23], "scfenergiesdata": [1, 7, 18, 23], "scfiterationdata": [1, 7, 23], "plot_energi": [1, 7, 23], "singleexcit": [1, 7], "smearingdata": [1, 7, 23], "spindata": [1, 7, 23], "statptdata": [1, 7, 23], "symmetrydata": [1, 7, 23], "turbomoledata": [1, 7, 23], "aoforceoutput": [1, 7, 23], "egradoutput": [1, 7, 23], "escfonlyoutput": [1, 7, 18, 23], "escfoutput": [1, 7, 23], "gradoutput": [1, 7, 23], "jobexoutput": [1, 7, 23], "mp2output": [1, 7, 23], "relaxoutput": [1, 7, 23], "ricc2output": [1, 7, 23], "scfoutput": [1, 7, 23], "statptoutput": [1, 7, 23], "all_don": [1, 7], "aoforce_analysi": [1, 7], "aoforce_numerical_integr": [1, 7], "basi": [1, 2, 4, 7, 15, 18, 23], "center": [1, 7, 23], "coordin": [1, 2, 4, 7, 12, 13, 15], "cosmo_head": [1, 7], "cosmo_result": [1, 7], "density_functional_data": [1, 7], "dftd": [1, 7], "egrad_excited_st": [1, 7], "electrostatic_mo": [1, 7], "escf_excit": [1, 7], "escf_gs_total_en": [1, 7], "escf_iter": [1, 7], "fermi": [1, 7], "get_split_jobex_pars": [1, 7], "get_valu": [1, 7], "grep_lin": [1, 7], "header": [1, 2, 7, 18], "integr": [1, 7, 9, 16, 17, 21, 23], "mp2_data": [1, 7], "mp2_result": [1, 7], "periodicity_data": [1, 7], "pre_escf_run": [1, 7], "pre_scf_run": [1, 7], "rdgrad_memori": [1, 7], "relax_conv_info": [1, 7], "relax_gradient_valu": [1, 7], "relax_info": [1, 7], "rij_info": [1, 7], "riper_scf_energi": [1, 7], "s2": [1, 7], "scf_energi": [1, 7], "scf_iter": [1, 7], "statpt_info": [1, 7], "string": [1, 2, 3, 4, 6, 7, 8, 9, 14, 15, 16, 18, 20, 23], "time": [1, 4, 7, 14, 15, 19, 22, 23], "convert_float": [1, 7], "convert_int": [1, 7], "convert_time_str": [1, 7], "eigeroutput": [1, 7], "compare_st": [1, 7], "eigerrunn": [1, 7], "get_eiger_output": [1, 7], "run": [1, 2, 4, 7, 9, 12, 14, 16, 18, 19, 21, 22], "has_fractional_occ": [1, 7], "max_occup": [1, 7], "eigenvalu": [1, 7, 19, 23], "filter_st": [1, 7], "gap": [1, 7, 23], "generate_lowest_filled_st": [1, 7], "has_hol": [1, 7, 23], "homo": [1, 7], "homo_index": [1, 7], "insert": [1, 7, 15], "irrep_indic": [1, 7], "lumo": [1, 7], "lumo_index": [1, 7], "n_state": [1, 7], "occup": [1, 2, 7, 23], "spin": [1, 7, 23], "get_mos_energi": [1, 7], "itestconfig": [1, 9], "define_timeout": [1, 9], "delete_tmp_dir": [1, 3, 6, 8, 9, 19], "dryrun": [1, 9, 19], "dryrun_fpath": [1, 9], "dryrun_use_ref_control": [1, 9], "generate_ref": [1, 9], "tol": [1, 2, 7, 9, 19], "itesterror": [1, 9], "assert_mson": [1, 9], "assert_almost_equ": [1, 9, 19], "compare_differ": [1, 9], "generate_control_for_test": [1, 9], "generate_reference_out_parser_fil": [1, 9], "generate_reference_output": [1, 9], "get_control_filepath": [1, 9], "get_control_integr": [1, 9], "get_sp": [1, 9], "get_tfp": [1, 9], "gisnan": [1, 9], "has_matplotlib": [1, 9], "run_itest": [1, 9, 19], "temp_dir": [1, 9, 19], "touch_fil": [1, 9], "i": [1, 2, 3, 4, 7, 8, 9, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23], "act": [1, 14], "an": [1, 2, 4, 7, 9, 13, 14, 15, 16, 17, 18, 19, 21, 22, 23], "interfac": [1, 4, 9, 12, 21, 22], "turbomol": [1, 2, 7, 9, 11, 12, 13, 14, 15, 16, 18, 20, 21, 23], "It": [1, 2, 3, 7, 14, 15, 17, 18, 19, 22], "allow": [1, 2, 4, 7, 8, 9, 13, 14, 15, 16, 18, 19, 22], "gener": [1, 2, 4, 7, 8, 9, 12, 13, 14, 15, 17, 18, 19, 20, 21, 22, 23], "pars": [1, 2, 7, 8, 12, 13, 14, 16, 20, 21], "easili": [1, 7, 15, 18, 19, 23], "thi": [1, 2, 4, 6, 7, 8, 9, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23], "root": [1, 7, 19, 23], "testcontrol": [2, 3], "test_add_cosmo": [2, 3, 4, 6], "test_cpc": [2, 3], "test_disp": [2, 3], "test_energi": [2, 3], "test_from_fil": [2, 3], "test_from_metr": [2, 3], "test_get_charg": [2, 3], "test_get_shel": [2, 3], "test_get_subfiles_list": [2, 3], "test_gradi": [2, 3], "test_is_uhf": [2, 3], "test_remove_energi": [2, 3], "test_remove_energy_in_control": [2, 3], "test_remove_gradi": [2, 3], "test_remove_gradient_in_control": [2, 3], "testdatagroupfunct": [2, 3], "pytestmark": [2, 3, 19], "test_adg": [2, 3], "test_cdg": [2, 3], "test_kdg": [2, 3], "test_mdgo": [2, 3], "test_sdg": [2, 3], "test_sdgo": [2, 3], "testenergi": [2, 3], "test_energy_mp2": [2, 3], "test_energy_scf": [2, 3], "testgradi": [2, 3], "test_empty_gradi": [2, 3], "test_fail_pars": [2, 3], "testshel": [2, 3], "test_clos": [2, 3, 4, 6, 7, 8], "test_fract": [2, 3], "test_uhf": [2, 3, 7, 8], "check_equivalent_dg": [2, 3], "test_cleanup": [2, 3], "test_compar": [2, 3], "test_compare_datagroup_str": [2, 3], "test_empti": [2, 3], "test_modify_data_group_opt": [2, 3], "test_remove_com": [2, 3], "test_remove_dg_from_list": [2, 3], "test_sdg_subfil": [2, 3], "test_show_data_group_opt": [2, 3], "test_show_subfile_fnam": [2, 3], "test_split_string_to_dg_list": [2, 3], "testinternaldefinit": [2, 3], "test_bond_angl": [2, 3], "test_collinear_bending_angl": [2, 3], "test_dihedral_angl": [2, 3], "test_dist": [2, 3], "test_from_str": [2, 3], "test_inverse_dist": [2, 3], "test_out_of_plane_angl": [2, 3], "test_perpendicular_bending_angl": [2, 3], "testmoleculesystem": [2, 3], "test_add_bond_angl": [2, 3], "test_add_dihedr": [2, 3], "test_add_dist": [2, 3], "test_check_index": [2, 3], "test_disord": [2, 3], "test_dummy_atom": [2, 3], "test_to_coord_str": [2, 3], "test_to_fil": [2, 3], "check_dg": [2, 3], "check_user_defined_bonds_dg": [2, 3], "testperiodicsystem": [2, 3], "test_periodic_2d": [2, 3], "test_periodic_3d": [2, 3], "test_periodic_wrong_rot": [2, 3], "test_read_periodic_2d": [2, 3], "testgetvers": [2, 3], "test_v72": [2, 3], "test_v731": [2, 3], "test_v741": [2, 3], "test_v751": [2, 3], "object": [2, 3, 4, 6, 7, 8, 9, 12, 13, 15, 16, 17, 18, 19, 21, 22], "repres": [2, 3, 7, 13, 15, 19, 22], "physic": [2, 7, 19, 22], "system": [2, 4, 7, 12, 14, 15, 19, 21, 22, 23], "class": [2, 3, 4, 6, 7, 8, 9, 18, 19, 22, 23], "molecule_or_structur": 2, "frozen_indic": [2, 13], "none": [2, 4, 6, 7, 8, 9, 14, 15, 18, 23], "0": [2, 4, 7, 9, 13, 19, 20, 21, 22, 23], "sourc": [2, 3, 4, 6, 7, 8, 9, 17, 19, 21, 22], "msonabl": [2, 7, 9, 21, 23], "common": [2, 7, 15, 18, 21, 22], "construct": [2, 4, 7, 8, 15], "paramet": [2, 3, 4, 6, 7, 8, 9, 16, 19, 21], "pymatgen": [2, 13, 21], "set": [2, 3, 4, 7, 9, 13, 14, 15, 16, 18, 19, 21, 23], "indic": [2, 7, 13, 22], "atom": [2, 7, 12, 13, 15], "should": [2, 3, 4, 6, 7, 8, 9, 13, 14, 15, 16, 17, 18, 19, 20, 22, 23], "have": [2, 6, 13, 14, 15, 17, 18, 19, 21, 22, 23], "fix": [2, 16, 19, 20, 21, 22], "cartesian": [2, 7, 13], "1": [2, 7, 9, 13, 15, 19, 20, 21, 22, 23], "2": [2, 4, 7, 9, 13, 15, 19, 21, 22], "3": [2, 7, 13, 15, 17, 19, 20, 21, 22], "give": [2, 11, 19, 22], "line": [2, 3, 7, 13, 14, 15, 18, 19, 22], "coord": [2, 3, 4, 7, 9, 14, 15, 19, 21], "intern": [2, 4, 7, 13, 14, 15, 16, 23], "return": [2, 3, 4, 6, 7, 9, 14, 15, 16, 18, 19, 22, 23], "list": [2, 3, 4, 6, 7, 8, 9, 13, 14, 15, 16, 18, 19, 22, 23], "type": [2, 3, 4, 7, 8, 9, 13, 14, 15, 16, 21, 22, 23], "filepath": [2, 4, 7], "write": [2, 7, 14, 18, 21, 22], "str": [2, 3, 4, 7, 9, 15], "path": [2, 4, 7, 9, 14, 15, 16, 19, 23], "abstract": [2, 7, 17, 18], "creat": [2, 4, 7, 9, 12, 15, 16, 18, 19, 20, 23], "implement": [2, 4, 9, 14, 15, 16, 17, 18, 19, 22, 23], "separ": [2, 6, 8, 14, 19, 22], "fmt": 2, "depend": [2, 4, 7, 15, 18, 19], "specifi": [2, 7, 9, 11, 14, 15, 22], "format": [2, 7, 13, 14, 17, 19, 21, 22], "The": [2, 3, 4, 7, 8, 9, 16, 17, 18, 20, 21, 22], "can": [2, 4, 7, 9, 11, 13, 14, 15, 16, 17, 18, 19, 21, 22, 23], "ani": [2, 7, 9, 14, 15, 16, 19, 22], "other": [2, 4, 6, 7, 8, 9, 13, 14, 15, 16, 17, 18, 19, 22, 23], "support": [2, 7, 9, 14, 15, 17, 18, 19, 20, 22], "could": [2, 7, 13, 16, 18, 19, 22, 23], "If": [2, 4, 7, 8, 9, 14, 15, 16, 18, 19, 22, 23], "code": [2, 4, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 22, 23], "would": [2, 7, 13, 15, 16, 17, 18, 19, 22, 23], "try": [2, 11, 14, 16], "infer": 2, "from": [2, 3, 4, 7, 8, 9, 12, 13, 14, 15, 16, 17, 18, 19, 21, 22, 23], "name": [2, 3, 4, 7, 8, 9, 14, 15, 16, 18, 19, 22, 23], "contain": [2, 7, 9, 11, 12, 13, 14, 15, 16, 18, 19, 21, 22, 23], "convert": [2, 4, 7, 9, 14, 17, 18, 23], "frozen": [2, 7, 13], "f": [2, 7, 13, 22], "append": [2, 9, 13, 19], "end": [2, 4, 7, 9, 13, 14, 15, 18, 22], "cell_str": 2, "periodic_str": 2, "lattice_str": 2, "periodic_extens": 2, "5": [2, 12, 13, 15, 19, 20, 21, 22], "get": [2, 6, 7, 9, 14, 18, 19, 22], "cell": 2, "For": [2, 7, 11, 13, 14, 15, 16, 18, 19, 20, 22, 23], "1d": [2, 7], "consist": [2, 12, 22], "singl": [2, 7, 9, 14, 15, 18, 19, 20, 22, 23], "number": [2, 3, 7, 9, 14, 15, 20, 22], "lattic": [2, 7, 12], "2d": [2, 7], "b": [2, 4, 7, 14, 15, 22], "gamma": [2, 7], "angl": [2, 7], "between": [2, 7, 9, 14, 15, 19, 21, 22], "3d": [2, 7], "6": [2, 7, 15, 19, 21, 22], "c": [2, 7, 14, 15, 22], "alpha": [2, 7, 14, 15], "beta": [2, 7, 14, 15], "onli": [2, 4, 7, 8, 9, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23], "both": [2, 9, 14, 18, 19, 22, 23], "describ": [2, 4, 7, 14, 16, 17, 18, 19, 23], "matrix": [2, 7, 15], "float": [2, 3, 4, 7, 9, 15, 18], "amount": [2, 19, 21], "angstrom": [2, 7, 13, 15], "artifici": 2, "ad": [2, 14, 15, 16, 18, 19, 21, 22], "vacuum": 2, "non": [2, 7, 22], "direct": [2, 7, 19, 22], "when": [2, 4, 7, 13, 14, 15, 16, 17, 18, 19, 20, 22], "ar": [2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 16, 17, 18, 19, 21, 22, 23], "provid": [2, 4, 7, 8, 11, 13, 14, 15, 16, 17, 18, 19, 21, 22, 23], "namedtupl": [2, 7], "function": [2, 3, 4, 6, 7, 8, 9, 13, 14, 15, 16, 18, 19, 20, 22, 23], "interact": [2, 14, 15, 22, 23], "directli": [2, 7, 14, 15, 16, 18, 19, 22, 23], "also": [2, 4, 7, 11, 13, 14, 15, 16, 17, 18, 19, 20, 22, 23], "relat": [2, 4, 12, 15, 23], "e": [2, 4, 7, 11, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23], "g": [2, 4, 7, 11, 14, 15, 18, 19, 20, 23], "etc": 2, "dg_list": [2, 14], "us": [2, 4, 7, 8, 9, 11, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23], "store": [2, 7, 8, 9, 12, 13, 14, 15, 18, 19, 20, 21, 23], "group": [2, 3, 13, 15, 16, 18, 19, 21, 23], "A": [2, 7, 8, 12, 14, 15, 17, 18, 19, 22], "kei": [2, 7, 9, 14, 15, 22], "valu": [2, 3, 4, 7, 8, 9, 13, 15, 16, 18, 19, 21, 23], "pair": 2, "specif": [2, 4, 6, 7, 8, 12, 13, 14, 15, 16, 17, 18, 19, 20, 22, 23], "mai": [2, 6, 7, 12, 14, 18, 19, 22], "seri": [2, 14, 18, 19, 20, 21, 23], "combin": [2, 7, 15, 18, 22], "thereof": 2, "initi": [2, 7, 14, 19, 22, 23], "usual": [2, 7, 14, 15, 18, 23], "read": [2, 7, 13, 14, 19, 20, 21, 22, 23], "epsilon": [2, 4, 7, 15], "nppa": [2, 4, 7, 15], "nspa": [2, 4, 7, 15], "disex": [2, 4, 7, 15], "rsolv": [2, 4, 7, 15], "routf": [2, 4, 7, 15], "caviti": [2, 4, 7, 15], "use_old_amat": [2, 4, 15], "add": [2, 7, 14, 15, 16, 18, 19, 20, 22], "cosmo": [2, 3, 7, 15, 23], "keyword": [2, 7, 9, 14, 15], "option": [2, 4, 7, 9, 13, 14, 15, 16, 18, 19, 22, 23], "all": [2, 3, 4, 6, 7, 8, 9, 12, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23], "written": [2, 4, 13, 14, 17, 19, 22, 23], "permitt": [2, 15], "scale": [2, 15], "screen": [2, 7, 15], "charg": [2, 4, 7, 15, 18, 22, 23], "int": [2, 4, 7, 15], "grid": [2, 7, 15, 23], "point": [2, 7, 15, 16, 18, 19, 20], "per": [2, 7, 15], "segment": [2, 15], "threshold": [2, 7, 15, 23], "element": [2, 3, 7, 9, 14, 15], "outer": [2, 15], "solvent": [2, 15], "sphere": [2, 15], "factor": [2, 7, 15], "outli": [2, 15], "correct": [2, 7, 8, 9, 12, 14, 15, 16, 19, 22, 23], "accept": [2, 15, 16, 17, 18, 22], "open": [2, 11, 14, 15, 21], "leav": [2, 15, 19], "untidi": [2, 15], "seam": [2, 15], "close": [2, 7, 14, 15, 22], "pave": [2, 15], "intersect": [2, 15], "bool": [2, 4, 7, 8, 9, 15], "true": [2, 3, 4, 7, 8, 9, 13, 14, 15, 19], "setup": [2, 15, 19, 20], "7": [2, 12, 15, 19, 20, 21, 22], "dest_dir": 2, "force_overwrit": 2, "fals": [2, 4, 7, 8, 9, 14, 15, 19], "copi": [2, 4, 15, 22], "referenc": [2, 19], "here": [2, 7, 8, 9, 14, 16, 17, 18, 19, 23], "destin": 2, "folder": [2, 4, 8, 9, 12, 14, 15, 17, 18, 19], "alreadi": [2, 4, 8, 14, 15, 16, 18, 19, 22], "exist": [2, 9, 13, 14, 15, 16, 18, 19], "present": [2, 4, 7, 13, 14, 15, 17, 19, 22], "overwritten": [2, 8], "properti": [2, 7, 8, 13, 18, 22, 23], "absent": [2, 7], "miss": [2, 7, 14, 15, 18], "classmethod": [2, 7], "filenam": [2, 7, 9], "given": [2, 3, 4, 7, 9, 13, 14, 15, 16, 18, 19, 20, 22, 23], "which": [2, 7, 8, 9, 11, 13, 14, 16, 18, 19, 22, 23], "new": [2, 7, 11, 12, 14, 15, 16, 17, 20, 21, 22], "redund_inp": 2, "extract": [2, 7, 12, 14, 15, 18, 19, 21, 23], "xxx": 2, "shells_typ": 2, "instanc": [2, 7, 9, 13, 14, 15, 16, 18, 23], "form": [2, 9, 13, 15, 22, 23], "grad": [2, 7, 12, 23], "determin": [2, 7, 9, 13, 14, 15, 19, 22, 23], "uhf": [2, 7, 14, 15, 23], "backup_suffix": 2, "remov": [2, 3, 7, 9, 14, 18, 19, 22], "last": [2, 7, 13, 23], "step": [2, 7, 14, 15, 22, 23], "In": [2, 3, 7, 8, 13, 14, 15, 16, 17, 18, 19, 20, 22, 23], "addit": [2, 3, 9, 12, 13, 14, 15, 16, 18, 19, 20, 22, 23], "origin": [2, 9, 14, 19, 22], "locat": [2, 17, 19], "n": [2, 4, 13, 15], "extern": [2, 11, 19, 23], "call": [2, 6, 7, 13, 14, 15, 16, 18, 19, 22, 23], "current": [2, 4, 7, 12, 14, 15, 17, 18, 19, 21], "modif": [2, 9, 12, 19, 20, 22], "been": [2, 4, 6, 7, 12, 15, 16, 18, 19, 21, 22, 23], "done": [2, 6, 7, 8, 13, 14, 15, 16, 19], "well": [2, 12, 13, 15, 18, 19, 20, 22, 23], "case": [2, 3, 4, 7, 8, 9, 14, 15, 16, 17, 18, 19, 22], "ignor": [2, 3, 7, 15], "rais": [2, 3, 4, 7, 9, 14, 15, 16, 19], "runtimeerror": [2, 7], "dispersion_correct": [2, 7], "dispers": [2, 7, 14, 15, 23], "method": [2, 4, 6, 7, 8, 9, 13, 14, 15, 16, 18, 19, 22, 23], "dft": [2, 4, 7, 14, 15, 23], "d1": [2, 4, 7, 15], "d2": [2, 4, 7, 15], "d3": [2, 4, 15], "bj": [2, 4, 15], "insensit": 2, "disp": [2, 4, 15], "elimin": 2, "collect": [2, 19, 22, 23], "tm": [2, 7], "execut": [2, 4, 7, 9, 14, 15, 16, 18, 19, 20, 21, 22, 23], "some": [2, 4, 7, 9, 12, 14, 15, 16, 18, 19, 22, 23], "scf": [2, 7, 15, 23], "scfkin": 2, "scfpot": 2, "mp2": [2, 4, 7, 12, 15, 23], "calcul": [2, 7, 8, 9, 12, 13, 15, 16, 18, 19, 21, 23], "kinet": [2, 7], "contribut": [2, 7, 11, 16, 19, 23], "potenti": [2, 7, 13, 16, 18], "total": [2, 7], "count": 2, "variat": 2, "less": [2, 23], "than": [2, 7, 14, 15, 18, 22, 23], "come": [2, 7, 15, 18, 19, 22, 23], "subfil": [2, 14, 23], "ax": [2, 7], "kwarg": [2, 3, 7], "evolut": [2, 7, 14], "matplotlib": [2, 7, 9], "figur": [2, 7, 15], "argument": [2, 4, 7, 9, 14, 15, 19], "pass": [2, 4, 7, 9, 14, 15, 16, 19, 22], "displai": [2, 7, 22], "mean": [2, 7, 12, 14, 18, 19, 22, 23], "titl": [2, 4, 7, 15], "show": [2, 7, 22], "savefig": [2, 7], "abc": [2, 7, 23], "png": [2, 7], "ep": [2, 7], "save": [2, 7], "size_kwarg": [2, 7], "dictionari": [2, 4, 7, 9, 14, 15, 16, 18, 23], "fig": [2, 7], "set_size_inch": [2, 7], "dict": [2, 4, 7, 9, 15], "w": [2, 7, 22], "h": [2, 7], "4": [2, 4, 7, 12, 13, 15, 19, 20, 21, 22], "tight_layout": [2, 7], "ax_grid": [2, 7], "left": [2, 7], "unchang": [2, 7], "ax_annot": [2, 7], "label": [2, 7], "subplot": [2, 7], "fig_clos": [2, 7], "lattice_vector": 2, "lattice_gradi": 2, "shape": [2, 7], "nstep": 2, "natom": [2, 7], "each": [2, 7, 9, 13, 14, 15, 18, 19, 22, 23], "perform": [2, 6, 7, 9, 12, 13, 14, 15, 16, 18, 19, 22, 23], "riper": [2, 7, 12, 23], "vector": [2, 7], "size": [2, 7, 15, 23], "dimension": [2, 12, 13], "one": [2, 3, 4, 7, 8, 9, 13, 14, 15, 16, 18, 19, 22, 23], "note": [2, 7, 9, 12, 13, 14, 15, 18, 19, 21, 23], "either": [2, 18, 19, 22], "differ": [2, 3, 7, 8, 9, 13, 14, 15, 16, 18, 19, 20, 22, 23], "One": [2, 7], "thu": [2, 15, 16, 18, 19, 20, 22, 23], "gradlatt": 2, "maximum": [2, 4, 7, 15], "largest": 2, "map": 2, "handl": [2, 4, 7, 12, 18], "integ": [2, 4], "fraction": [2, 7, 19], "presenc": [2, 14, 19], "same": [2, 3, 7, 13, 14, 18, 19, 22, 23], "multipl": [2, 7, 15, 19], "tupl": [2, 7, 8, 9, 13], "irrep_index": [2, 7], "occupi": [2, 7, 14, 23], "json": [2, 3, 7, 8, 9, 15, 18, 19, 21], "serializ": [2, 7], "represent": [2, 7, 14, 23], "d": [2, 7, 19, 22], "serial": [2, 12, 18, 19], "valueerror": [2, 7], "exampl": [2, 7, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23], "a1": [2, 7, 15], "b1": [2, 7], "b2": [2, 7], "irreduc": [2, 7, 14, 23], "electron": [2, 7, 15, 22], "data_group": [2, 14], "data_block": [2, 14], "backup_fil": 2, "comment": [2, 3, 14, 15, 17], "dollar": [2, 14], "sign": [2, 14, 22], "automat": [2, 7, 12, 13, 14, 16, 17, 19, 22], "block": [2, 14], "correspond": [2, 7, 8, 13, 14, 16, 18, 19, 20, 22], "back": [2, 9, 19, 23], "up": [2, 14, 15, 18, 19], "backup": 2, "replac": [2, 14, 19], "equival": [2, 3, 7, 9, 14, 18, 19, 22], "To": [2, 14, 19, 20, 22], "explicit": [2, 9, 14, 19], "simpli": [2, 7, 14, 16, 18], "control_dir": 2, "its": [2, 4, 7, 8, 13, 14, 15, 16, 19, 22, 23], "anoth": [2, 14, 19], "doe": [2, 14, 15, 22, 23], "directori": [2, 4, 7, 9, 14, 15, 19], "dir": 2, "strict": [2, 14, 19], "exact": [2, 14, 18, 22], "match": [2, 6, 7, 14, 19], "start": [2, 7, 14, 15, 16, 18, 19, 20, 21, 22], "modifi": [2, 7, 15, 16, 18, 19, 20, 21, 22], "sever": [2, 7, 18, 19, 21, 23], "updat": [2, 4, 7, 12, 14, 15, 18, 19, 20, 22], "accord": [2, 4, 7, 14, 15, 16, 17, 22], "option_name1": 2, "option_valu": 2, "option_name2": 2, "identifi": [2, 7, 9, 14, 16, 19, 20, 22], "entir": [2, 14, 18, 19, 22], "sinc": [2, 9, 14, 15, 16, 17, 18, 19, 23], "wai": [2, 4, 7, 14, 15, 16, 18, 19, 21, 22, 23], "attempt": [2, 22], "made": [2, 18, 22], "suitabl": [2, 7, 16, 17, 18, 19], "respons": [2, 14, 15, 16, 22], "caller": 2, "safer": 2, "chang": [2, 4, 7, 8, 13, 14, 17, 18, 20, 21, 22], "show_from_subfil": [2, 14], "raise_if_multiple_subfil": 2, "raise_if_missing_subfil": 2, "raise_if_regular_and_subfil": 2, "full": [2, 7, 9, 14, 15, 16, 21, 22], "just": [2, 14, 15, 18, 23], "so": [2, 14, 15, 16, 18, 19, 21, 22, 23], "correctli": [2, 18, 19], "within": [2, 7, 9, 15, 22], "suppos": 2, "whether": [2, 7, 9, 19, 22], "error": [2, 4, 7, 9, 14, 15, 16, 19], "standard": [2, 4, 7, 14, 15, 17, 22], "refer": [2, 3, 8, 9, 12, 13, 14, 16, 18, 19, 22], "regular": [2, 18, 23], "select": [2, 7, 14, 15], "found": [2, 4, 7, 9, 14, 17, 18, 19, 21, 22, 23], "includ": [2, 7, 14, 16, 21, 22], "anyth": [2, 22], "after": [2, 7, 14, 15, 16, 18, 19, 22], "symbol": [2, 7, 13, 14], "like": [2, 4, 7, 8, 9, 12, 13, 14, 15, 17, 18, 19, 20, 21, 22, 23], "queri": 2, "model": [2, 22], "manipul": 2, "convent": [2, 13, 14, 16, 17, 19], "fashion": [2, 22], "mani": 2, "human": 2, "readabl": [2, 22], "ascii": 2, "formal": 2, "split": [2, 3, 7, 14], "optim": [2, 7, 13, 14], "associ": [2, 7, 22, 23], "word": [2, 14], "veri": [2, 16, 18, 19], "larg": [2, 15], "molecular": [2, 4, 7, 15], "orbit": [2, 4, 7, 15, 23], "scfmo": [2, 23], "mo": [2, 7, 15], "complet": [2, 4, 7, 13, 14, 15, 16, 23], "descript": [2, 7, 16, 19, 23], "user": [2, 3, 8, 13, 14, 15, 16, 17, 18, 22, 23], "": [2, 7, 16, 18, 21, 22], "manual": [2, 15], "avail": [2, 4, 7, 12, 13, 14, 15, 16, 18, 19, 21, 22, 23], "unnecessari": [2, 22], "space": [2, 3, 7, 14], "kept": [2, 18, 19], "appli": [2, 12, 14, 15, 19, 22], "interfer": 2, "actual": [2, 7, 9, 15, 19, 22], "alwai": [2, 4, 7, 9, 13, 14, 16, 18, 19], "first": [2, 3, 4, 7, 9, 12, 14, 16, 18, 19, 22, 23], "move": [2, 14, 19], "befor": [2, 4, 7, 9, 14, 15, 16, 18, 19, 21, 23], "ignored_dg": 2, "return_all_diff": 2, "asid": [2, 19], "two": [2, 3, 7, 9, 15, 19, 22], "chunk": [2, 7], "exactli": [2, 6, 18, 19], "except": [2, 3, 4, 6, 7, 9, 14, 15, 17, 19, 22], "thei": [2, 4, 7, 9, 13, 14, 17, 18, 19, 21, 22, 23], "lower": [2, 7, 19, 23], "toler": [2, 7, 9, 15, 18, 19], "otherwis": [2, 4, 7, 15, 18, 19, 22], "messag": [2, 4, 7, 9], "caus": [2, 22], "fail": [2, 3, 4, 7, 8, 9, 15, 16, 19, 22, 23], "varieti": [2, 15], "notat": [2, 7], "intend": [2, 19, 22], "more": [2, 13, 14, 16, 17, 18, 19, 21, 22, 23], "purpos": [2, 22], "rather": 2, "tool": [2, 4, 16, 19, 21, 22], "guarante": [2, 22], "even": [2, 4, 7, 9, 15, 16, 19, 22], "comparison": [2, 3, 9, 19], "expect": [2, 4, 6, 7, 9, 12, 15, 16, 19, 22], "skip": [2, 4, 9, 16], "result": [2, 7, 13, 14, 15, 19, 22, 23], "occurr": [2, 7], "coexist": 2, "shown": [2, 14, 19], "anywai": [2, 15, 19], "cleanup_typ": 2, "clean": [2, 12, 14], "everyth": [2, 14], "blank": [2, 14], "tab": [2, 14], "typic": [2, 14, 15, 22], "cleanup": [2, 3], "valid": [2, 4, 7, 14, 21, 22], "before_first_dollar": 2, "blank_lin": 2, "leading_spaces_dollar": 2, "leading_spaces_hash": 2, "four": 2, "hash": 2, "preced": [2, 7], "charact": 2, "dg1": [2, 3], "dg2": [2, 3], "second": [2, 3, 7, 15, 19, 23], "comment_typ": 2, "inform": [2, 4, 7, 11, 12, 13, 18, 19, 22, 23], "three": [2, 7, 15, 22, 23], "dummi": [2, 14], "span": 2, "inlin": [2, 14], "newlin": 2, "hash_start": 2, "after_end": 2, "hash_inlin": 2, "without": [2, 4, 8, 12, 13, 14, 18, 19, 22], "dg_to_remov": 2, "duplic": 2, "usag": 2, "follow": [2, 4, 7, 13, 14, 15, 16, 17, 18, 19, 21, 22, 23], "remove_comment_typ": 2, "five": 2, "incorrectli": 2, "respect": [2, 7, 14, 19, 22, 23], "redund": [2, 13, 18], "off": [2, 7, 16], "global": [2, 19], "statu": [2, 13, 22], "weight": 2, "bond": [2, 3, 13], "bend": [2, 13], "k": [2, 13, 19], "involv": [2, 18], "linear": 2, "consid": [2, 4, 7, 14, 15, 16, 18, 19, 22, 23], "length": [2, 7], "collinear": 2, "linc": 2, "dihedr": 2, "tor": [2, 13], "stre": [2, 13], "definit": [2, 7, 9, 12, 13, 15, 19, 22], "establish": 2, "notimpl": 2, "concret": 2, "subclass": [2, 7, 9, 13, 14, 15, 16, 18, 19, 23], "intdef": [2, 3, 13], "static": [2, 6], "appropri": [2, 18, 19, 22], "0001": [2, 9], "check": [2, 3, 4, 6, 7, 9, 12, 14, 15, 16, 18, 19, 23], "posit": [2, 7], "index": [2, 7, 21, 23], "prepend": [2, 14], "insid": [2, 9, 15, 16, 18, 19, 22], "invers": 2, "invr": 2, "int_def": [2, 13], "user_defined_bond": [2, 13], "about": [2, 7, 11, 13, 15, 16, 18, 19, 21, 22, 23], "geometri": [2, 4, 7, 13, 14, 15, 23], "dynam": [2, 13, 15, 22], "while": [2, 13, 14, 15, 16, 18, 19], "constraint": [2, 18], "attribut": [2, 9, 13, 14, 15, 16, 18, 19, 22, 23], "notabl": 2, "inconsist": 2, "obtain": [2, 7, 8, 14, 18, 23], "order": [2, 3, 6, 7, 15, 16, 19, 22, 23], "index1": [2, 13], "index2": [2, 13], "where": [2, 4, 7, 13, 14, 15, 16, 18, 19, 22, 23], "atom1": [2, 13], "atom2": [2, 13], "vertex": [2, 13], "add_user_def_bond": 2, "simpl": [2, 7, 15], "produc": [2, 7, 9, 13, 15, 16, 19, 22, 23], "those": [2, 8, 13, 15, 18, 19, 22], "atom3": 2, "atom4": 2, "third": [2, 22], "fourth": 2, "overwrit": [2, 8, 18, 19], "atol": [2, 9], "ltol": 2, "whose": [2, 14, 17, 22], "bohr": [2, 13], "degre": 2, "out": [2, 7, 15, 22, 23], "plane": [2, 7], "outp": 2, "linp": 2, "miscellan": 2, "quit": [2, 4], "send": [2, 15, 16], "qq": [2, 15], "version": [2, 7, 9, 11, 12, 14, 17, 18, 21, 22, 23], "basic": [2, 7, 14, 17, 19, 22, 23], "exit": 2, "begin": [2, 14], "testdir": [3, 8], "instanti": [3, 18, 23], "mark": [3, 14, 18, 19, 22], "parametr": 3, "arg": 3, "control_filenam": 3, "control_test": 3, "control_filepath": 3, "variabl": [3, 4, 13], "repetit": 3, "white": 3, "import": [3, 9, 13, 14, 15, 17, 19, 22, 23], "param": 3, "molecule_filenam": 3, "ch4": 3, "molecule_filepath": 3, "to_test": 3, "ref": [3, 19], "helper": [3, 8, 13, 16, 18, 19, 23], "treat": [3, 7, 22], "them": [3, 4, 7, 13, 14, 16, 18, 19, 21, 22, 23], "approx": 3, "intedef": 3, "assum": [3, 19, 22], "val": [3, 13], "through": [3, 4, 8, 13, 14, 15, 16, 22, 23], "assert": [3, 9, 22], "properli": [3, 4], "sort": [3, 7, 23], "structure_filepath": 3, "testdefinerunn": [4, 6], "assert_sendline_cal": [4, 6], "assert_sendline_has_cal": [4, 6], "test_add_atomic_coordinates_from_fil": [4, 6], "test_add_atomic_coordinates_from_file_cartesian": [4, 6], "test_copy_mo_files_ab_mo": [4, 6], "test_copy_mo_files_alpha_beta": [4, 6], "test_copy_mo_files_error": [4, 6], "test_copy_mo_files_mo": [4, 6], "test_define_basis_set": [4, 6], "test_define_core_potenti": [4, 6], "test_define_symmetri": [4, 6], "test_define_symmetry_error": [4, 6], "test_determine_symmetri": [4, 6], "test_determine_symmetry_ep": [4, 6], "test_dump_command_fil": [4, 6], "test_excited_state_menu_error_not_activ": [4, 6], "test_excited_state_menu_frequ": [4, 6], "test_excited_state_menu_irrep": [4, 6], "test_excited_state_menu_irrep_wrong_sym": [4, 6], "test_excited_state_menu_polli": [4, 6], "test_excited_state_menu_rpa": [4, 6], "test_excited_state_menu_urpa": [4, 6], "test_excited_state_menu_urpa_error": [4, 6], "test_excited_state_menu_wrong_ex_method": [4, 6], "test_excited_state_menu_wrong_menu": [4, 6], "test_existing_coordin": [4, 6], "test_existing_coordinates_cartesian": [4, 6], "test_existing_coordinates_error": [4, 6], "test_existing_coordinates_no_upd": [4, 6], "test_existing_coordinates_unsupport": [4, 6], "test_expect": [4, 6], "test_expect_raise_eof": [4, 6], "test_expect_raise_timeout": [4, 6], "test_extended_hueckel_theory_menu_charg": [4, 6], "test_extended_hueckel_theory_menu_default": [4, 6], "test_extended_hueckel_theory_menu_error": [4, 6], "test_extended_hueckel_theory_menu_nocharg": [4, 6], "test_extended_hueckel_theory_menu_unpair": [4, 6], "test_general_menu_ccsdt": [4, 6], "test_general_menu_dft": [4, 6], "test_general_menu_hf": [4, 6], "test_general_menu_wrong_method": [4, 6], "test_generate_internal_coordin": [4, 6], "test_generate_internal_coordinates_error": [4, 6], "test_geometry_menu_copymo": [4, 6], "test_geometry_menu_incompatibility_1": [4, 6], "test_geometry_menu_incompatibility_2": [4, 6], "test_geometry_menu_new_coords_1": [4, 6], "test_geometry_menu_new_coords_2": [4, 6], "test_geometry_menu_new_coords_3": [4, 6], "test_geometry_menu_new_coords_4": [4, 6], "test_geometry_menu_no_new_coord": [4, 6], "test_get_bin_path": [4, 6], "test_go_to_general_menu": [4, 6], "test_init": [4, 6], "test_initialize_control_1": [4, 6], "test_initialize_control_2": [4, 6], "test_initialize_control_incompat": [4, 6], "test_is_al": [4, 6], "test_postprocess": [4, 6], "test_quit_general_menu": [4, 6], "test_run_full_1": [4, 6], "test_run_full_2": [4, 6], "test_run_generate_mo_fil": [4, 6], "test_run_generate_mo_files_sym": [4, 6], "test_run_update_internal_coord": [4, 6], "test_run_update_internal_coords_error": [4, 6], "test_sendlin": [4, 6], "test_set_basi": [4, 6], "test_set_basis_error": [4, 6], "test_set_basis_error_2": [4, 6], "test_set_basis_error_3": [4, 6], "test_set_dft_options_no_dft": [4, 6], "test_set_dft_options_use_dft": [4, 6], "test_set_dft_options_wrong_xc": [4, 6], "test_set_ecp_error": [4, 6], "test_set_ecp_error_2": [4, 6], "test_set_ecp_error_3": [4, 6], "test_set_metr": [4, 6], "test_set_mo_from_control_fil": [4, 6], "test_set_mo_from_control_file_2": [4, 6], "test_set_mo_from_control_file_error": [4, 6], "test_set_mo_from_control_file_longpath": [4, 6], "test_set_mp2_opt": [4, 6], "test_set_mp2_options_f12": [4, 6], "test_set_mp2_options_geoopt": [4, 6], "test_set_mp2_options_mp2": [4, 6], "test_set_mp2_options_mp2_error": [4, 6], "test_set_ri_st": [4, 6], "test_set_ri_state_marij": [4, 6], "test_set_scf_opt": [4, 6], "test_skip_atomic_attribute_menu": [4, 6], "test_skip_atomic_attribute_menu_error": [4, 6], "test_skip_atomic_attribute_menu_intern": [4, 6], "test_switch_to_atomic_attribute_menu": [4, 6], "test_switch_to_atomic_attribute_menu_intern": [4, 6], "test_switch_to_atomic_attribute_menu_internal_error": [4, 6], "test_switch_to_molecular_orbital_definition_menu": [4, 6], "test_switch_to_scf_menu": [4, 6], "testexcept": [4, 6], "test_creat": [4, 6], "dr_data": [4, 6, 16], "test_get_define_templ": [4, 6], "test_validate_paramet": [4, 6], "pattern": [4, 15, 22], "go": [4, 15, 19], "timeout": [4, 15], "eof": 4, "problem": [4, 7, 9, 11, 15, 16, 18, 22], "incomplet": 4, "ir": [4, 7, 13, 15], "happen": [4, 14, 15, 16, 18, 19], "incompat": [4, 17, 19, 20, 22], "among": [4, 7, 14, 15, 19, 22], "previou": [4, 7, 12, 15, 18, 19, 22, 23], "60": [4, 15, 22], "log_filepath": 4, "log": [4, 12, 20, 21], "workdir": 4, "use_popen": 4, "pexpect": [4, 15], "commun": [4, 18, 22], "avoid": [4, 7, 14, 16, 19, 22], "side": [4, 14, 19, 23], "effect": [4, 14, 19, 22], "dure": [4, 13, 14, 18], "wait": 4, "search": [4, 7, 21], "environ": [4, 11, 19], "popen_spawn": 4, "popenspawn": 4, "popen": 4, "spawn": [4, 15, 16], "pty": 4, "define_command": 4, "dump": [4, 7], "command": [4, 6, 7, 9, 14, 15, 16, 19, 22], "behavior": [4, 14, 16, 19], "menu": [4, 15, 16, 22], "job": [4, 7, 9, 15], "reach": 4, "being": [4, 7, 14, 15, 19, 22], "normal": [4, 7, 22, 23], "abnorm": [4, 15], "regener": [4, 9, 12, 15, 19, 22], "must": [4, 22], "usemo": [4, 15], "taken": [4, 9, 19, 21], "scratch": 4, "extend": [4, 15, 22], "hueckel": [4, 15], "guess": [4, 15], "edit": 4, "least": [4, 6, 16, 18, 19, 22], "enabl": [4, 15, 21, 22], "enter": [4, 22], "sym": [4, 15], "desi": [4, 15], "notic": [4, 7, 12, 13, 19, 22], "disabl": [4, 15], "termin": [4, 15, 22], "similar": [4, 14, 18, 22, 23], "afterward": [4, 13, 15], "were": [4, 6, 7, 14, 19, 22], "successfulli": [4, 9], "unexpect": 4, "proper": [4, 7], "ha": [4, 7, 8, 12, 13, 14, 15, 16, 18, 19, 22, 23], "do": [4, 9, 16, 17, 18, 21, 22], "schema": [4, 15, 16], "excit": [4, 7, 15], "cerberu": [4, 15, 16], "yaml": [4, 15, 19], "nullabl": [4, 16], "basis_atom": [4, 15], "keysrul": 4, "valuesrul": 4, "use_cosmo": [4, 15], "coord_fil": [4, 15], "copymo": [4, 15], "boolean": [4, 7, 19], "desy_ep": [4, 15], "min": 4, "ecp_atom": 4, "ex_all_st": [4, 15], "default_sett": 4, "local": [4, 22], "setter": 4, "ex_method": [4, 15], "ex_multi": [4, 15], "ex_exopt": [4, 15], "ex_frequ": [4, 15], "ex_frequency_unit": [4, 15], "ex_irrep_st": [4, 15], "rpa": [4, 7, 15], "ci": [4, 15], "dynpol": [4, 15], "polli": [4, 15], "singlet": [4, 7, 15], "doublet": [4, 15], "triplet": [4, 15], "ex_mp2": [4, 15], "gridsiz": [4, 14, 15], "marij": [4, 7, 15], "oneof": 4, "rijk": [4, 15], "ri": [4, 7, 15, 23], "maxcor": [4, 15], "adc": [4, 15], "ccsd": [4, 15], "t": [4, 15], "ccsdt": [4, 15], "maxit": [4, 15], "hf": [4, 15], "mp2energi": [4, 15], "scfconv": [4, 14, 15], "max": [4, 7], "9": [4, 15, 22], "scfiterlimit": [4, 14, 15], "200": 4, "sym_ep": [4, 15], "unpaired_electron": [4, 15], "use_f12": [4, 15], "experiment": [4, 12, 13, 15, 16], "featur": [4, 11, 13, 15, 16, 17, 19, 20, 21, 22], "unit": [6, 13, 15, 16, 17, 18, 21], "mainli": [6, 13, 15, 17, 18, 19, 23], "mock": [6, 16, 19], "sendline_mock": 6, "sendlin": 6, "els": 6, "assert_has_cal": 6, "mo_dirpath": [6, 8], "request": [6, 7, 8, 11], "test_aoforcevibrationaldata": [7, 8], "test_scfiterationdata": [7, 8], "test_str": [7, 8], "test_properti": [7, 8], "cls_dict_path": [7, 8, 18], "generate_fil": [7, 8, 18], "testfunct": [7, 8], "test_convert_float": [7, 8], "test_convert_int": [7, 8], "test_convert_time_str": [7, 8], "testpars": [7, 8], "test_fail_all_done_check": [7, 8], "test_get_split_jobex_pars": [7, 8], "test_get_valu": [7, 8], "test_grep_lin": [7, 8], "parser_and_dict": [7, 8], "test_eiger_runn": [7, 8], "test_error_homo": [7, 8], "test_hol": [7, 8], "test_no_empty_st": [7, 8], "test_parsing_failur": [7, 8], "stdout": [7, 9, 19, 23], "reli": [7, 16, 17, 18, 19, 22, 23], "core_memory_dft": 7, "memory_per_atom": 7, "atoms_per_loop": 7, "construction_tim": 7, "numer": [7, 9, 14, 18, 19, 23], "aoforc": [7, 12, 19, 23], "Will": [7, 9], "numforc": 7, "remain": [7, 14, 22], "memori": [7, 15], "mb": 7, "need": [7, 14, 15, 16, 18, 19, 22, 23], "kb": 7, "loop": 7, "timing_descript": 7, "cpu_tim": 7, "wall_tim": 7, "cpu": 7, "wall": 7, "intens": 7, "m": [7, 13, 19], "dipole_mo": 7, "analysi": [7, 19, 23], "rotat": [7, 23], "constant": 7, "cm": 7, "optic": 7, "u": [7, 13, 18, 19], "3x3": 7, "dipol": [7, 23], "moment": [7, 15, 16, 23], "principl": [7, 17, 19], "axi": 7, "frequenc": [7, 15], "ddip_dq": 7, "intensities_perc": 7, "raman": 7, "eigenvector": [7, 19], "reduced_mass": 7, "vibrat": [7, 23], "mode": [7, 19, 22], "deriv": 7, "km": 7, "mol": 7, "percentag": 7, "num": 7, "reduc": [7, 14], "mass": [7, 23], "zpve": 7, "panda": 7, "datafram": 7, "neg": 7, "satisfi": [7, 22], "condit": [7, 18, 19, 22], "ab": 7, "zero": 7, "relev": [7, 14, 18, 19, 21, 22, 23], "basis_per_speci": 7, "aux_basis_per_speci": 7, "number_scf_basis_func": 7, "number_scf_aux_basis_func": 7, "most": [7, 13, 14, 15, 16, 17, 18, 19, 21, 22, 23], "escf": [7, 12, 18, 23], "speci": 7, "auxiliari": [7, 9], "auxialiari": 7, "info": 7, "screening_charg": 7, "element_radiu": 7, "area": [7, 22], "volum": [7, 22], "nsph": 7, "npspher": 7, "disex2": 7, "phsran": 7, "ampran": 7, "refind": 7, "fepsi": 7, "dielectr": 7, "total_energi": [7, 23], "total_energy_oc_corr": 7, "dielectric_energi": 7, "dielectric_energy_oc_corr": 7, "radiu": 7, "site": 7, "egrad": [7, 12, 23], "spherical_grids": 7, "gridpoint": 7, "exchang": [7, 19, 23], "correl": [7, 19, 23], "spheric": 7, "en_corr": 7, "paser": 7, "unrestricted_electron": 7, "dipole_vector": 7, "dipole_norm": 7, "quadrupole_tensor": 7, "quadrupole_trac": 7, "quadrupole_anisotropi": 7, "electrostat": [7, 23], "quadrupol": [7, 23], "unrestrict": 7, "compon": [7, 19, 22], "tensor": 7, "trace": 7, "anisotropi": 7, "calc_typ": 7, "iter": [7, 15, 23], "residuum_convergence_criterium": 7, "n_occupied_orbit": 7, "orbital_character": 7, "max_davidson_it": 7, "machine_precis": 7, "max_core_mem": 7, "max_cao_basis_vector": 7, "max_treated_vector": 7, "irrep_data": 7, "gs_tot_en": 7, "residuum": 7, "converg": [7, 12, 23], "criterium": 7, "how": [7, 16, 18, 19, 21, 22, 23], "davidson": 7, "machin": [7, 19, 22], "precis": [7, 13, 22], "cao": 7, "simultan": [7, 22], "degeneraci": 7, "dimens": 7, "ground": 7, "detail": [7, 17, 18, 19, 21, 22, 23], "sublist": 7, "convern": 7, "dealt": 7, "inner": 7, "euclidean": 7, "residu": 7, "msg": 7, "func_typ": 7, "xcfun": 7, "relax": [7, 12, 23], "concern": [7, 16, 17, 18, 22], "xc": 7, "gga": 7, "lda": 7, "center_of_mass": 7, "center_of_charg": 7, "integral_neglect_threshold": 7, "thize": [7, 14], "thime": [7, 14], "gradien": 7, "neglect": 7, "storag": [7, 22], "energy_onli": 7, "lattice_param": 7, "shortest_interatomic_dist": 7, "direct_space_vector": 7, "reciprocal_space_vector": 7, "shortest": 7, "interatom": 7, "align": 7, "x": [7, 9, 19, 20, 21], "xy": 7, "reciproc": 7, "pi": 7, "v": 7, "a2": 7, "a3": 7, "b3": 7, "crystallograph": 7, "recov": 7, "energy_chang": 7, "rms_displ": 7, "max_displ": 7, "rms_grad": 7, "max_grad": 7, "final": [7, 14, 17, 18, 22, 23], "what": [7, 18, 19, 22], "statpt": [7, 12, 18, 23], "thr": 7, "conv": 7, "achiev": [7, 19, 22], "rm": 7, "displac": 7, "thr_int_coord": 7, "criterion": [7, 22], "norm_cartesian": 7, "norm_intern": 7, "max_intern": 7, "stapt": [7, 23], "take": [7, 13, 15, 16, 18, 19, 22, 23], "account": 7, "ricor": 7, "rij_memori": 7, "rik": 7, "ridft": [7, 12, 15, 18, 19, 23], "approxim": [7, 22], "rij": 7, "host": [7, 22], "start_tim": 7, "end_tim": 7, "wa": [7, 15, 22, 23], "datetim": 7, "dii": [7, 23], "diis_error_vect": 7, "conv_tot_en": 7, "conv_one_e_en": 7, "virtual_orbital_shift_on": 7, "virtual_orbital_shift_limit": 7, "restart_fil": 7, "oper": [7, 14, 16, 22, 23], "switch": [7, 19], "increment": [7, 20], "virtual": [7, 23], "shift": [7, 23], "character": [7, 22], "restart": 7, "kinetic_energi": 7, "potential_energi": 7, "virial_theorem": [7, 23], "wavefunction_norm": 7, "coulomb_energi": 7, "xc_energi": 7, "ts_energi": 7, "free_energi": 7, "sigma0_energi": 7, "virial": 7, "theorem": 7, "wavefunct": 7, "coulomb": 7, "entrop": 7, "free": [7, 22], "sigma0": 7, "first_index": 7, "damp": 7, "keep": [7, 14, 16, 19, 22], "wast": [7, 18], "higher": [7, 12, 21, 23], "tot_en": 7, "osc_str": 7, "rot_str": 7, "dominant_contribut": 7, "moments_column": 7, "cannot": [7, 14, 15, 19, 22], "oscil": 7, "strength": 7, "rotatori": 7, "domin": 7, "occ_orb": 7, "virt_orb": 7, "coeff": 7, "coeffici": 7, "electr": 7, "magnet": 7, "column": 7, "electric_dipol": 7, "magnetic_dipol": 7, "electric_quadrupol": 7, "initial_elec_temp": 7, "final_elec_temp": 7, "annealing_factor": 7, "annealing_homo_lumo_gap_limit": 7, "smearing_de_limit": 7, "smear": [7, 23], "temperatur": 7, "anneal": 7, "de": 7, "max_trust_radiu": 7, "min_trust_radiu": 7, "init_trust_radiu": 7, "min_grad_norm_for_gdii": 7, "prev_steps_for_gdii": 7, "hessian_update_method": 7, "thr_energy_chang": 7, "thr_max_displ": 7, "thr_max_grad": 7, "thr_rms_displ": 7, "thr_rms_grad": 7, "use_default": 7, "final_step_radiu": 7, "trust": 7, "minimum": [7, 15], "gdii": 7, "hessian": 7, "n_rep": 7, "rep": 7, "part": [7, 12, 14, 18, 19, 22], "might": [7, 12, 13, 14, 15, 16, 18, 19, 21, 22], "build": [7, 18, 23], "numerical_integr": 7, "aforc": 7, "work": [7, 8, 12, 13, 14, 15, 18, 19, 22], "nativ": 7, "ex_stat": 7, "minim": 7, "rel": [7, 9, 14, 16, 18], "prece": 7, "rdgrad": [7, 23], "jobex": [7, 12, 23], "mpgrad": [7, 12, 23], "ricc2": [7, 12, 15, 23], "pnoccsd": [7, 23], "pno": 7, "program": [7, 9, 12, 17, 22], "yet": [7, 19], "dscf": [7, 12, 15, 19, 23], "main": [7, 16, 18, 19, 21], "portion": [7, 16, 18, 19, 22], "aim": [7, 15, 19, 22], "reusabl": 7, "possibl": [7, 14, 15, 16, 17, 18, 19, 22], "across": [7, 19, 22], "quantiti": [7, 21, 23], "access": [7, 15, 16, 18, 19, 20, 21, 22, 23], "lazi": [7, 18, 23], "section": [7, 15, 16, 17, 18, 19, 22, 23], "crash": 7, "lead": [7, 14, 15, 17, 19], "wrong": 7, "heavili": [7, 16], "regex": 7, "isotop": 7, "activ": [7, 15, 22], "subdictionari": 7, "xf": 7, "functional_msg": 7, "functional_nam": 7, "functional_typ": 7, "chosen": [7, 18], "exopt": [7, 15], "check_all_don": 7, "exec_en": 7, "parser_en": 7, "exec_grad": 7, "parser_grad": 7, "exec_relax": 7, "parser_relax": 7, "text": [7, 18, 21, 23], "find": [7, 22], "th": [7, 15], "callabl": 7, "better": [7, 19], "instead": [7, 9, 13, 14, 16, 18, 19, 22, 23], "nline": 7, "similarli": [7, 23], "grep": 7, "plu": [7, 15, 22], "tm_version": [7, 8], "tm_build": 7, "tm_lattice_param": 7, "pre": [7, 12], "print": [7, 9, 19, 23], "alloc": 7, "exponenti": 7, "11": [7, 21, 22], "23": 7, "123e": 7, "01": [7, 19], "123d": 7, "compos": [7, 23], "asterisk": 7, "fortran": 7, "dai": [7, 22], "hour": 7, "12": [7, 22], "minut": 7, "55": 7, "nelec": 7, "eiger": [7, 23], "ascend": [7, 23], "inddic": 7, "1e": [7, 9], "06": 7, "anot": 7, "data_path": 7, "compat": [7, 18, 19, 21], "mutablesequ": [7, 23], "sequenc": [7, 16], "increas": [7, 14, 15, 21], "eigenst": [7, 23], "subset": [7, 16], "filter": 7, "shortcut": [7, 14], "hole": 7, "allow_fract": 7, "only_occupi": 7, "reorder_irrep_index": 7, "lowest": [7, 23], "fill": [7, 13], "ones": [7, 15, 18, 19], "procedur": [7, 16, 22, 23], "becaus": [7, 18, 22], "equal": [7, 9, 17], "self": [7, 11, 16], "ly": 7, "dg_string": 7, "py": [8, 17, 19, 20], "repeat": [8, 18, 19, 23], "verifi": [8, 14, 15, 19], "implicitli": 8, "target": [8, 16, 18, 19], "extens": [8, 15, 22], "files_list": [8, 18], "pytest": [8, 9, 19], "fixtur": [8, 16, 18, 19], "These": [8, 13, 14, 15, 19, 22, 23], "ensur": [8, 16, 22], "parser_method": [8, 9, 18], "infrastructur": [9, 19], "configur": [9, 19, 20], "10": [9, 15, 22], "dryrun_itest": [9, 19], "baseexcept": 9, "itest": [9, 19], "obj": 9, "test_if_subclass": 9, "tri": 9, "By": [9, 15, 19, 22], "deactiv": 9, "desir": [9, 16], "rtol": 9, "07": 9, "ignored_valu": 9, "err_msg": 9, "verbos": 9, "numpi": 9, "assert_equ": 9, "16": [9, 21, 22], "assertionerror": 9, "requir": [9, 12, 13, 14, 15, 16, 17, 18, 19, 22], "scalar": 9, "arrai": 9, "almost": 9, "conflict": 9, "assert_allclos": 9, "absolut": [9, 15, 19, 22], "still": [9, 13, 14, 18, 19], "though": [9, 15, 18, 19, 22, 23], "failur": [9, 15, 16, 19, 22], "current_level": 9, "nest": 9, "test_definit": 9, "log_fpath": 9, "outdir": 9, "logfil": 9, "struc": 9, "file_nam": 9, "_privat": 9, "expos": 9, "public": [9, 22], "isnan": 9, "typeerror": 9, "rubric": 9, "ufunc": 9, "sometim": 9, "notimplementedtyp": 9, "wrapper": 9, "make": [9, 11, 14, 16, 17, 18, 19, 20, 22], "sure": [9, 14, 16, 22], "onc": [9, 18, 19], "solv": [9, 15], "level": [9, 16, 18, 19, 23], "instal": [9, 19, 22], "define_opt": 9, "coord_filenam": 9, "control_reference_filenam": 9, "file_class": 9, "datagroups_opt": 9, "success": [9, 19], "datagroup_nam": 9, "datagroup_valu": 9, "delet": [9, 19], "changedir": 9, "context": [9, 18, 19, 22], "manag": [9, 18, 19, 21], "temporari": [9, 19], "tempfil": 9, "mkdtemp": 9, "cd": 9, "monti": [9, 18, 21, 23], "o": [9, 11, 13, 19], "preserv": [9, 22], "yield": 9, "touch": 9, "turbomoleio": [10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 22, 23], "you": [11, 13, 14, 15, 16, 18, 19, 20, 22, 23], "patch": [11, 20], "issu": 11, "github": [11, 12], "http": [11, 22], "com": 11, "matgenix": 11, "pleas": [11, 22], "much": [11, 14, 15, 16, 19, 23], "small": [11, 15, 18, 19], "snippet": 11, "reproduc": [11, 14, 19], "your": [11, 15, 16, 18, 19, 22, 23], "python": [11, 12, 13, 14, 17, 19, 20, 21], "document": [12, 16, 17, 19, 20, 22, 23], "commit": [12, 22], "hook": 12, "lint": 12, "workflow": [12, 15, 21], "adapt": [12, 22], "progress": [12, 13], "api": [12, 13, 14, 17, 20, 23], "prior": [12, 13, 19, 22], "preliminari": 12, "rimp2": 12, "reorgan": 12, "script": [12, 14, 19, 22, 23], "offici": [12, 22], "gpl": [12, 22], "v3": 12, "licens": [12, 21], "simul": 13, "howev": [13, 14, 15, 16, 18, 22, 23], "further": [13, 22, 23], "reason": [13, 14, 15, 19, 22], "advantag": [13, 15, 16, 17, 18], "convers": 13, "limit": [13, 14, 15, 19, 22], "capabl": 13, "isol": [13, 18], "see": [13, 15, 16, 17, 19, 22, 23], "below": [13, 14, 18, 19, 22, 23], "exploit": 13, "simplest": [13, 15], "translat": 13, "look": [13, 14, 19, 23], "00000000000000": 13, "17616323936717": 13, "03717448857876": 13, "35232647873438": 13, "complic": [13, 16], "commonli": 13, "we": [13, 14, 15, 16, 18, 19, 22, 23], "stress": 13, "again": [13, 18, 23], "oppos": 13, "Their": [13, 19], "bring": [13, 16], "few": [13, 14, 16, 17, 23], "let": [13, 18], "never": [13, 14], "nor": [13, 22], "As": [13, 14, 15, 18, 19], "subsequ": 14, "lack": 14, "unambigu": 14, "distinct": 14, "superflu": 14, "particular": [14, 15, 16, 18, 19, 20, 22, 23], "appar": 14, "strictli": [14, 17], "mandatori": 14, "under": [14, 18, 19, 22], "offer": [14, 22, 23], "view": [14, 18, 22], "inspir": 14, "distribut": [14, 16, 19, 22], "simplic": 14, "ambigu": 14, "encount": [14, 15], "ask": [14, 22], "intent": [14, 22], "p": [14, 15], "m3": 14, "interest": [14, 22], "dg": 14, "kind": [14, 15, 18, 19, 22, 23], "uniform": 14, "next": [14, 19, 22], "join": 14, "want": [14, 15, 16, 18, 21, 22], "c1": 14, "100": 14, "abov": [14, 15, 18, 19, 22, 23], "lastli": [14, 18, 19, 23], "whole": [14, 15, 18, 19, 22], "connect": [14, 19, 21, 22], "pbe": 14, "design": [14, 18, 19, 21, 22, 23], "besid": 14, "frequent": 14, "over": [14, 19], "best": [14, 16, 19, 22], "attent": 14, "organ": [14, 18, 19, 22, 23], "analys": 14, "divid": [14, 19], "mention": [14, 15, 19], "explicitli": [14, 15, 22], "crucial": 15, "challeng": 15, "autom": 15, "child": 15, "applic": [15, 19, 22], "respond": 15, "complex": 15, "speed": 15, "navig": 15, "histori": [15, 16], "submit": 15, "sent_command": [15, 16], "repli": [15, 16], "brought": 15, "situat": 15, "foreseen": 15, "realli": [15, 19], "low": 15, "too": [15, 22], "120": 15, "good": [15, 16, 18, 19, 23], "compromis": 15, "previous": [15, 19], "interrupt": 15, "help": [15, 17, 19], "predefin": 15, "prepar": [15, 19], "dp": 15, "dr": 15, "prepapar": 15, "Of": [15, 22], "cours": [15, 19, 22], "tune": [15, 19], "proceed": 15, "retriev": 15, "cover": [15, 19, 22], "everi": [15, 22], "scenario": 15, "focus": [15, 23], "keywork": 15, "overrid": [15, 19], "forc": [15, 22], "sy": 15, "distinguish": [15, 22], "ciss": 15, "rpat": 15, "cist": 15, "outcom": [15, 19], "eht": 15, "uht": 15, "larger": [15, 22], "num_exc_st": 15, "multiplicity_int": 15, "exci": 15, "nexc": 15, "polaris": 15, "589": 15, "nm": 15, "enforc": [15, 17, 22], "treatment": 15, "geoopt": 15, "def2": 15, "sv": 15, "specic": 15, "unpair": 15, "f12": 15, "ccsdapprox": 15, "rir12": 15, "accuraci": 15, "rang": 15, "cosmo_out": 15, "paramat": 15, "At": [15, 23], "prevent": [15, 19, 22], "typo": 15, "altern": [15, 16, 22], "define_parameters_valid": 15, "Being": [15, 16], "bit": 15, "care": [15, 18, 19, 21], "certain": [15, 22], "probabl": [15, 16, 18, 23], "guid": [16, 17, 18, 19, 23], "briefli": 16, "discuss": [16, 18, 19], "aspect": [16, 17], "rememb": [16, 18], "trivial": [16, 19], "prone": 16, "littl": [16, 19], "wish": [16, 19, 22, 23], "explor": 16, "plan": [16, 19], "protect": [16, 22], "_": 16, "right": [16, 22], "turn": 16, "introduc": [16, 18, 19], "carefulli": [16, 18, 19, 21], "There": 16, "mind": [16, 18], "advanc": [16, 21], "_sendlin": 16, "_expect": 16, "track": 16, "receiv": [16, 22], "known": 16, "intercept": 16, "signal": 16, "disrupt": 16, "flow": [16, 22], "run_": 16, "share": [16, 18, 22], "idea": [16, 22, 23], "mimic": 16, "reus": 16, "develop": [16, 17, 18, 19, 22, 23], "natur": [16, 18, 21, 22], "variou": [16, 23], "explan": [16, 17, 18], "hoc": 16, "interconnected": 16, "introduct": [16, 19], "succe": 16, "against": [16, 22], "real": 16, "welcom": [16, 22], "improv": 16, "power": [16, 22], "place": [16, 19, 22, 23], "learn": 16, "dependeci": 16, "With": 17, "nonetheless": 17, "compli": [17, 22], "guidelin": 17, "greater": 17, "8": [17, 21, 22], "understand": [17, 19, 23], "orient": 17, "inherit": 17, "often": [17, 19], "pep": 17, "style": 17, "although": [17, 22, 23], "deviat": 17, "advis": [17, 21, 22], "stick": [17, 19], "essenti": [17, 19, 22], "futur": [17, 22], "googl": 17, "docstr": 17, "docs_rst": 17, "typeset": 17, "restructuredtext": 17, "html": [17, 19, 22], "sphinx": 17, "doc": [17, 20], "rst": 17, "invok": 17, "task": 17, "remark": 17, "strongli": 17, "discourag": [17, 19], "backward": [17, 18, 19, 21], "clear": [17, 22], "clearli": [17, 22], "highlight": 17, "possibli": [17, 19, 23], "agre": [17, 18, 22], "maintain": [17, 22], "explain": [18, 19, 22], "depth": 18, "inspect": [18, 19], "meant": 18, "lazy_properti": 18, "mix": 18, "temporarili": 18, "dispos": 18, "narrow": 18, "down": [18, 21], "abl": 18, "togeth": [18, 23], "On": 18, "hand": 18, "prefer": [18, 22, 23], "approach": [18, 23], "quickli": 18, "he": 18, "rest": [18, 23], "impact": 18, "proce": [18, 19], "bottom": 18, "express": [18, 22, 23], "focu": [18, 23], "analyz": [18, 19], "consider": 18, "appear": 18, "disappear": 18, "latter": 18, "newli": 18, "__init__": [18, 20], "deseri": 18, "old": [18, 19], "anymor": 18, "upon": 18, "manner": [18, 20, 22, 23], "address": [18, 22], "encapsul": 18, "recommend": 18, "hold": 18, "exec_to_out_obj": 18, "decid": [18, 22], "mayb": 18, "extrem": [18, 19], "becom": 18, "bug": [18, 19, 20, 21], "partial": 18, "loos": 18, "warn": 18, "deal": [18, 23], "process": 19, "meet": [19, 22], "behav": 19, "exhaust": 19, "beyond": [19, 22], "scope": [19, 22], "somewhat": 19, "arbitrari": 19, "own": [19, 22], "reintroduc": 19, "later": [19, 22], "wide": [19, 22], "custom": [19, 22], "coverag": [19, 22], "cov": 19, "sum": 19, "easiest": 19, "pip": 19, "mongomock": 19, "runtest": 19, "sh": 19, "project": 19, "report": [19, 21], "coverage_html": 19, "coveragerc_unit": 19, "coveragerc_integr": 19, "subfold": 19, "creation": 19, "toward": 19, "high": 19, "rate": 19, "alon": [19, 23], "99": 19, "tm_v7": 19, "additionn": 19, "necessari": [19, 22], "integrations_test": 19, "exclud": [19, 22], "outright": 19, "obvious": 19, "meaningless": 19, "date": [19, 22], "elaps": 19, "chemic": 19, "slightli": [19, 20], "impract": 19, "meaning": 19, "acoust": 19, "vari": 19, "inde": 19, "cumbersom": 19, "inevit": 19, "underli": 19, "renam": 19, "altogeth": 19, "now": 19, "releas": [19, 20, 21, 22], "light": 19, "looser": 19, "tolear": 19, "wise": 19, "test_dscf": 19, "test_run_dscf_hf": 19, "trigger": 19, "imposs": 19, "wrongli": 19, "systemat": [19, 22, 23], "short": [19, 22], "enough": [19, 23], "comput": [19, 22], "resourc": 19, "gain": 19, "89": 19, "test_": 19, "discov": 19, "experi": 19, "unittest": 19, "testcas": 19, "onlin": 19, "practic": [19, 22], "whenev": 19, "tmpdir": 19, "why": [19, 22], "conftest": 19, "eas": [19, 20], "itself": [19, 22], "benzen": 19, "benzene_myxc": 19, "hereaft": [19, 22], "testgen": 19, "testexec": 19, "testnam": 19, "excerpt": 19, "tree": 19, "aceton_ful": 19, "h2_numforc": 19, "aceton_dftd3_tzvp": 19, "h2o_std": 19, "h2o_uhf": 19, "nh3_cosmo_fermi": 19, "nh3_dftd1": 19, "tests_config": 19, "generate_output_fil": 19, "generate_control": 19, "tm_vx": 19, "y": [19, 20], "z": 19, "v7": 19, "thing": [19, 22], "action": [19, 22], "fulli": 19, "due": 19, "critic": 19, "measur": [19, 22], "dev_script": 19, "parsing_update_differ": 19, "dry": 19, "minor": [19, 20], "occur": [19, 22], "fpath": 19, "aris": [19, 22], "newest": 19, "older": [19, 20], "safe": 19, "transit": 19, "facilit": 19, "know": [19, 22], "adopt": [20, 22], "semant": 20, "major": [20, 22], "__version__": 20, "conf": 20, "latest": 20, "librari": [21, 22], "summar": 21, "mongodb": 21, "databas": 21, "firework": 21, "quick": 21, "overal": 21, "appendix": 21, "runner": 21, "suit": 21, "changelog": 21, "feb": 21, "24": 21, "2022": 21, "15": [21, 22], "sep": 21, "20": [21, 22], "2021": 21, "mar": 21, "page": 21, "softwar": 22, "redistribut": 22, "term": 22, "gnu": 22, "publish": 22, "foundat": 22, "hope": 22, "warranti": 22, "impli": 22, "merchant": 22, "fit": 22, "FOR": 22, "29": 22, "june": 22, "2007": 22, "copyright": 22, "inc": 22, "fsf": 22, "org": 22, "everyon": 22, "permit": 22, "verbatim": 22, "preambl": 22, "copyleft": 22, "awai": 22, "freedom": 22, "contrast": 22, "our": 22, "author": 22, "speak": 22, "price": 22, "piec": [22, 23], "deni": 22, "surrend": 22, "therefor": 22, "grati": 22, "fee": 22, "recipi": 22, "And": 22, "legal": 22, "permiss": 22, "sake": 22, "erron": 22, "devic": 22, "manufactur": 22, "fundament": 22, "abus": 22, "product": 22, "individu": 22, "unaccept": 22, "prohibit": 22, "substanti": 22, "domain": 22, "stand": 22, "readi": 22, "provis": 22, "threaten": 22, "constantli": 22, "patent": 22, "restrict": 22, "special": 22, "danger": 22, "proprietari": 22, "assur": 22, "render": 22, "AND": 22, "law": 22, "semiconductor": 22, "mask": 22, "license": 22, "earlier": 22, "unmodifi": 22, "propag": 22, "secondarili": 22, "liabl": 22, "infring": 22, "privat": 22, "countri": 22, "convei": 22, "parti": 22, "mere": 22, "network": 22, "transfer": 22, "extent": 22, "conveni": 22, "promin": 22, "visibl": 22, "tell": 22, "item": 22, "recogn": 22, "bodi": 22, "languag": 22, "serv": 22, "kernel": 22, "window": 22, "compil": 22, "interpret": 22, "link": [22, 23], "subprogram": 22, "intim": 22, "grant": 22, "irrevoc": 22, "met": 22, "affirm": 22, "unlimit": 22, "constitut": 22, "acknowledg": 22, "fair": 22, "long": 22, "sole": 22, "exclus": 22, "facil": 22, "materi": 22, "behalf": 22, "outsid": 22, "relationship": 22, "circumst": 22, "sublicens": 22, "anti": 22, "circumvent": 22, "No": 22, "shall": 22, "deem": 22, "technolog": 22, "fulfil": 22, "oblig": 22, "articl": 22, "wipo": 22, "treati": 22, "decemb": 22, "1996": 22, "waiv": 22, "forbid": 22, "exercis": 22, "disclaim": 22, "medium": 22, "conspicu": 22, "intact": 22, "absenc": 22, "along": [22, 23], "carri": 22, "anyon": 22, "who": [22, 23], "possess": 22, "regardless": 22, "invalid": 22, "independ": 22, "aggreg": 22, "inclus": 22, "embodi": 22, "accompani": 22, "durabl": 22, "customarili": 22, "interchang": 22, "year": 22, "spare": 22, "cost": 22, "server": 22, "occasion": 22, "noncommerci": 22, "subsect": [22, 23], "6b": 22, "sai": 22, "peer": 22, "transmiss": 22, "6d": 22, "consum": 22, "tangibl": 22, "person": 22, "famili": 22, "household": 22, "sold": 22, "incorpor": 22, "dwell": 22, "doubt": 22, "resolv": 22, "favor": 22, "commerci": 22, "industri": 22, "unless": 22, "signific": 22, "suffic": 22, "continu": 22, "interf": 22, "transact": 22, "perpetu": 22, "But": 22, "neither": 22, "retain": 22, "abil": 22, "rom": 22, "servic": 22, "advers": 22, "affect": 22, "violat": 22, "rule": 22, "protocol": 22, "publicli": 22, "password": 22, "unpack": 22, "supplement": 22, "govern": 22, "regard": 22, "notwithstand": 22, "holder": 22, "liabil": 22, "misrepresent": 22, "licensor": 22, "declin": 22, "trademark": 22, "trade": 22, "indemnif": 22, "contractu": 22, "assumpt": 22, "impos": 22, "relicens": 22, "surviv": 22, "statement": 22, "expressli": 22, "void": 22, "paragraph": 22, "ceas": 22, "reinstat": 22, "provision": 22, "until": 22, "perman": 22, "notifi": 22, "cessat": 22, "moreov": 22, "cure": 22, "30": 22, "receipt": 22, "qualifi": 22, "Not": 22, "ancillari": 22, "consequ": 22, "likewis": 22, "noth": 22, "downstream": 22, "subject": 22, "complianc": 22, "entiti": 22, "asset": 22, "subdivid": 22, "merg": 22, "whatev": 22, "predecessor": 22, "had": 22, "effort": 22, "royalti": 22, "litig": 22, "cross": 22, "claim": 22, "counterclaim": 22, "lawsuit": 22, "alleg": 22, "sell": 22, "sale": 22, "contributor": 22, "acquir": 22, "worldwid": 22, "agreement": 22, "denomin": 22, "coven": 22, "sue": 22, "knowingli": 22, "readili": 22, "arrang": 22, "depriv": 22, "yourself": 22, "benefit": 22, "knowledg": 22, "believ": 22, "pursuant": 22, "procur": 22, "convey": 22, "discriminatori": 22, "busi": 22, "payment": 22, "primarili": 22, "28": 22, "march": 22, "constru": 22, "defens": 22, "court": 22, "contradict": 22, "excus": 22, "pertin": 22, "whom": 22, "refrain": 22, "13": 22, "affero": 22, "14": 22, "revis": 22, "Such": 22, "spirit": 22, "choos": 22, "ever": 22, "proxi": 22, "THERE": 22, "NO": 22, "THE": 22, "TO": 22, "BY": 22, "IN": 22, "OR": 22, "AS": 22, "OF": 22, "BUT": 22, "NOT": 22, "risk": 22, "qualiti": 22, "WITH": 22, "prove": 22, "defect": 22, "repair": 22, "event": 22, "WILL": 22, "BE": 22, "damag": 22, "incident": 22, "consequenti": 22, "inabl": 22, "loss": 22, "BEING": 22, "inaccur": 22, "sustain": 22, "IF": 22, "SUCH": 22, "17": 22, "review": 22, "waiver": 22, "civil": 22, "greatest": 22, "attach": 22, "safest": 22, "pointer": 22, "brief": 22, "www": 22, "contact": 22, "paper": 22, "mail": 22, "hypothet": 22, "gui": 22, "box": 22, "employ": 22, "programm": 22, "school": 22, "subroutin": 22, "lesser": 22, "lgpl": 22, "name_of_the_execut": 23, "dig": 23, "decomposit": 23, "energy_data": 23, "0x7fb15f425eb8": 23, "49586861429": 23, "42945116692": 23, "gather": 23, "scf_output": 23, "0x7fd37d6282b0": 23, "tailor": 23, "sens": 23, "punctual": 23, "mostli": 23, "top": 23, "resolut": 23, "ident": 23, "criteria": 23, "cc2": 23, "uhfmo_alpha": 23, "uhfmo_beta": 23}, "objects": {"": [[1, 0, 0, "-", "turbomoleio"]], "turbomoleio": [[2, 0, 0, "-", "core"], [4, 0, 0, "-", "input"], [7, 0, 0, "-", "output"], [9, 0, 0, "-", "testfiles"]], "turbomoleio.core": [[2, 0, 0, "-", "base"], [2, 0, 0, "-", "control"], [2, 0, 0, "-", "datagroups"], [2, 0, 0, "-", "molecule"], [2, 0, 0, "-", "periodic"], [2, 0, 0, "-", "symmetry"], [3, 0, 0, "-", "tests"], [2, 0, 0, "-", "utils"]], "turbomoleio.core.base": [[2, 1, 1, "", "BaseSystem"], [2, 3, 1, "", "get_coord_lines"], [2, 3, 1, "", "get_mol_and_indices_frozen"]], "turbomoleio.core.base.BaseSystem": [[2, 2, 1, "", "coord_lines"], [2, 2, 1, "", "to_coord_file"], [2, 2, 1, "", "to_coord_string"], [2, 2, 1, "", "to_file"]], "turbomoleio.core.control": [[2, 1, 1, "", "Control"], [2, 1, 1, "", "Defaults"], [2, 1, 1, "", "Energy"], [2, 1, 1, "", "Gradient"], [2, 1, 1, "", "Shells"], [2, 3, 1, "", "adg"], [2, 3, 1, "", "cdg"], [2, 3, 1, "", "cpc"], [2, 3, 1, "", "kdg"], [2, 3, 1, "", "mdgo"], [2, 3, 1, "", "sdg"], [2, 3, 1, "", "sdgo"]], "turbomoleio.core.control.Control": [[2, 2, 1, "", "add_cosmo"], [2, 2, 1, "", "cpc"], [2, 4, 1, "", "energy"], [2, 2, 1, "", "from_file"], [2, 2, 1, "", "from_metric"], [2, 2, 1, "", "get_charge"], [2, 2, 1, "", "get_shells"], [2, 2, 1, "", "get_subfiles_list"], [2, 4, 1, "", "gradient"], [2, 4, 1, "", "is_uhf"], [2, 2, 1, "", "remove_last_energy"], [2, 2, 1, "", "remove_last_gradient"], [2, 2, 1, "", "set_disp"], [2, 2, 1, "", "to_file"]], "turbomoleio.core.control.Defaults": [[2, 5, 1, "", "METRIC"]], "turbomoleio.core.control.Energy": [[2, 4, 1, "", "delta_e"], [2, 2, 1, "", "from_file"], [2, 2, 1, "", "from_string"], [2, 4, 1, "", "n_steps"], [2, 2, 1, "", "plot"]], "turbomoleio.core.control.Gradient": [[2, 2, 1, "", "from_file"], [2, 2, 1, "", "from_string"], [2, 4, 1, "", "last_grad_max"], [2, 4, 1, "", "last_grad_norm"], [2, 4, 1, "", "max_gradients"], [2, 4, 1, "", "n_steps"], [2, 4, 1, "", "norms"], [2, 2, 1, "", "plot"]], "turbomoleio.core.control.Shells": [[2, 2, 1, "", "as_dict"], [2, 2, 1, "", "from_dict"], [2, 2, 1, "", "from_file"], [2, 2, 1, "", "from_string"], [2, 4, 1, "", "irreps"], [2, 2, 1, "", "to_datagroup"], [2, 4, 1, "", "total_electrons"]], "turbomoleio.core.datagroups": [[2, 1, 1, "", "DataGroups"], [2, 3, 1, "", "cleanup_string"], [2, 3, 1, "", "compare_datagroup_string"], [2, 3, 1, "", "remove_comments"], [2, 3, 1, "", "remove_dg_from_list"], [2, 3, 1, "", "split_string_to_dg_list"]], "turbomoleio.core.datagroups.DataGroups": [[2, 2, 1, "", "add_data_group"], [2, 2, 1, "", "adg"], [2, 2, 1, "", "as_dict"], [2, 2, 1, "", "cdg"], [2, 2, 1, "", "change_data_group"], [2, 2, 1, "", "compare"], [2, 2, 1, "", "empty"], [2, 2, 1, "", "from_dict"], [2, 2, 1, "", "from_file"], [2, 2, 1, "", "kdg"], [2, 2, 1, "", "kill_data_group"], [2, 2, 1, "", "mdgo"], [2, 2, 1, "", "modify_data_group_options"], [2, 4, 1, "", "ndg"], [2, 4, 1, "", "number_of_data_groups"], [2, 2, 1, "", "sdg"], [2, 2, 1, "", "sdgo"], [2, 2, 1, "", "show_data_group"], [2, 2, 1, "", "show_data_group_option"], [2, 2, 1, "", "show_subfile_fname"], [2, 2, 1, "", "to_file"]], "turbomoleio.core.molecule": [[2, 1, 1, "", "BondAngle"], [2, 1, 1, "", "CollinearBendingAngle"], [2, 1, 1, "", "DihedralAngle"], [2, 1, 1, "", "Distance"], [2, 1, 1, "", "InternalDefinition"], [2, 1, 1, "", "InverseDistance"], [2, 1, 1, "", "MoleculeSystem"], [2, 1, 1, "", "OutOfPlaneAngle"], [2, 1, 1, "", "PerpendicularBendingAngle"]], "turbomoleio.core.molecule.BondAngle": [[2, 2, 1, "", "compute_value"], [2, 5, 1, "", "coord_str"], [2, 5, 1, "", "coord_type"], [2, 5, 1, "", "n_atoms"]], "turbomoleio.core.molecule.CollinearBendingAngle": [[2, 2, 1, "", "compute_value"], [2, 5, 1, "", "coord_str"], [2, 5, 1, "", "coord_type"], [2, 5, 1, "", "n_atoms"]], "turbomoleio.core.molecule.DihedralAngle": [[2, 2, 1, "", "compute_value"], [2, 5, 1, "", "coord_str"], [2, 5, 1, "", "coord_type"], [2, 5, 1, "", "n_atoms"]], "turbomoleio.core.molecule.Distance": [[2, 2, 1, "", "compute_value"], [2, 5, 1, "", "coord_str"], [2, 5, 1, "", "coord_type"], [2, 5, 1, "", "n_atoms"]], "turbomoleio.core.molecule.InternalDefinition": [[2, 2, 1, "", "compute_value"], [2, 5, 1, "", "coord_str"], [2, 5, 1, "", "coord_type"], [2, 2, 1, "", "from_string"], [2, 2, 1, "", "get_subclass_from_str"], [2, 2, 1, "", "is_valid"], [2, 5, 1, "", "n_atoms"], [2, 2, 1, "", "to_string"]], "turbomoleio.core.molecule.InverseDistance": [[2, 2, 1, "", "compute_value"], [2, 5, 1, "", "coord_str"], [2, 5, 1, "", "coord_type"], [2, 5, 1, "", "n_atoms"]], "turbomoleio.core.molecule.MoleculeSystem": [[2, 2, 1, "", "add_bond_angle"], [2, 2, 1, "", "add_dihedral"], [2, 2, 1, "", "add_distance"], [2, 2, 1, "", "as_dict"], [2, 2, 1, "", "from_dict"], [2, 2, 1, "", "from_file"], [2, 2, 1, "", "from_string"], [2, 2, 1, "", "get_int_def_inconsistencies"], [2, 2, 1, "", "has_inconsistencies"], [2, 4, 1, "", "molecule"], [2, 2, 1, "", "to_coord_string"]], "turbomoleio.core.molecule.OutOfPlaneAngle": [[2, 2, 1, "", "compute_value"], [2, 5, 1, "", "coord_str"], [2, 5, 1, "", "coord_type"], [2, 5, 1, "", "n_atoms"]], "turbomoleio.core.molecule.PerpendicularBendingAngle": [[2, 2, 1, "", "compute_value"], [2, 5, 1, "", "coord_str"], [2, 5, 1, "", "coord_type"], [2, 5, 1, "", "n_atoms"]], "turbomoleio.core.periodic": [[2, 1, 1, "", "PeriodicSystem"]], "turbomoleio.core.periodic.PeriodicSystem": [[2, 2, 1, "", "as_dict"], [2, 2, 1, "", "from_dict"], [2, 2, 1, "", "from_file"], [2, 2, 1, "", "from_string"], [2, 4, 1, "", "structure"], [2, 2, 1, "", "to_coord_string"]], "turbomoleio.core.tests": [[3, 0, 0, "-", "test_control"], [3, 0, 0, "-", "test_datagroups"], [3, 0, 0, "-", "test_molecule"], [3, 0, 0, "-", "test_periodic"], [3, 0, 0, "-", "test_utils"]], "turbomoleio.core.tests.test_control": [[3, 1, 1, "", "TestControl"], [3, 1, 1, "", "TestDatagroupFunctions"], [3, 1, 1, "", "TestEnergy"], [3, 1, 1, "", "TestGradient"], [3, 1, 1, "", "TestShells"], [3, 3, 1, "", "check_equivalent_dg"]], "turbomoleio.core.tests.test_control.TestControl": [[3, 2, 1, "", "test_add_cosmo"], [3, 2, 1, "", "test_cpc"], [3, 2, 1, "", "test_disp"], [3, 2, 1, "", "test_energy"], [3, 2, 1, "", "test_from_file"], [3, 2, 1, "", "test_from_metric"], [3, 2, 1, "", "test_get_charge"], [3, 2, 1, "", "test_get_shells"], [3, 2, 1, "", "test_get_subfiles_list"], [3, 2, 1, "", "test_gradient"], [3, 2, 1, "", "test_is_uhf"], [3, 2, 1, "", "test_remove_energy"], [3, 2, 1, "", "test_remove_energy_in_control"], [3, 2, 1, "", "test_remove_gradient"], [3, 2, 1, "", "test_remove_gradient_in_control"]], "turbomoleio.core.tests.test_control.TestDatagroupFunctions": [[3, 5, 1, "", "pytestmark"], [3, 2, 1, "", "test_adg"], [3, 2, 1, "", "test_cdg"], [3, 2, 1, "", "test_cpc"], [3, 2, 1, "", "test_kdg"], [3, 2, 1, "", "test_mdgo"], [3, 2, 1, "", "test_sdg"], [3, 2, 1, "", "test_sdgo"]], "turbomoleio.core.tests.test_control.TestEnergy": [[3, 2, 1, "", "test_energy_mp2"], [3, 2, 1, "", "test_energy_scf"]], "turbomoleio.core.tests.test_control.TestGradient": [[3, 2, 1, "", "test_empty_gradient"], [3, 2, 1, "", "test_fail_parsing"], [3, 2, 1, "", "test_gradient"], [3, 2, 1, "", "test_periodic"]], "turbomoleio.core.tests.test_control.TestShells": [[3, 2, 1, "", "test_closed"], [3, 2, 1, "", "test_fail_parse"], [3, 2, 1, "", "test_fractional"], [3, 2, 1, "", "test_uhf"]], "turbomoleio.core.tests.test_datagroups": [[3, 3, 1, "", "test_cleanup"], [3, 3, 1, "", "test_compare"], [3, 3, 1, "", "test_compare_datagroup_string"], [3, 3, 1, "", "test_datagroups"], [3, 3, 1, "", "test_empty"], [3, 3, 1, "", "test_modify_data_group_options"], [3, 3, 1, "", "test_remove_comments"], [3, 3, 1, "", "test_remove_dg_from_list"], [3, 3, 1, "", "test_sdg_subfiles"], [3, 3, 1, "", "test_show_data_group_option"], [3, 3, 1, "", "test_show_subfile_fname"], [3, 3, 1, "", "test_split_string_to_dg_list"]], "turbomoleio.core.tests.test_molecule": [[3, 1, 1, "", "TestInternalDefinition"], [3, 1, 1, "", "TestMoleculeSystem"], [3, 3, 1, "", "check_dg"], [3, 3, 1, "", "check_user_defined_bonds_dg"]], "turbomoleio.core.tests.test_molecule.TestInternalDefinition": [[3, 5, 1, "", "pytestmark"], [3, 2, 1, "", "test_bond_angle"], [3, 2, 1, "", "test_collinear_bending_angle"], [3, 2, 1, "", "test_dihedral_angle"], [3, 2, 1, "", "test_distance"], [3, 2, 1, "", "test_from_string"], [3, 2, 1, "", "test_inverse_distance"], [3, 2, 1, "", "test_out_of_plane_angle"], [3, 2, 1, "", "test_perpendicular_bending_angle"]], "turbomoleio.core.tests.test_molecule.TestMoleculeSystem": [[3, 2, 1, "", "test_add_bond_angle"], [3, 2, 1, "", "test_add_dihedral"], [3, 2, 1, "", "test_add_distance"], [3, 2, 1, "", "test_check_index"], [3, 2, 1, "", "test_disordered"], [3, 2, 1, "", "test_dummy_atoms"], [3, 2, 1, "", "test_from_string"], [3, 2, 1, "", "test_to_coord_string"], [3, 2, 1, "", "test_to_file"]], "turbomoleio.core.tests.test_periodic": [[3, 1, 1, "", "TestPeriodicSystem"]], "turbomoleio.core.tests.test_periodic.TestPeriodicSystem": [[3, 2, 1, "", "test_periodic_2d"], [3, 2, 1, "", "test_periodic_3d"], [3, 2, 1, "", "test_periodic_wrong_rotation"], [3, 2, 1, "", "test_read_periodic_2d"]], "turbomoleio.core.tests.test_utils": [[3, 1, 1, "", "TestGetVersion"]], "turbomoleio.core.tests.test_utils.TestGetVersion": [[3, 2, 1, "", "test_V72"], [3, 2, 1, "", "test_V731"], [3, 2, 1, "", "test_V741"], [3, 2, 1, "", "test_V751"]], "turbomoleio.core.utils": [[2, 3, 1, "", "define_quit"], [2, 3, 1, "", "get_tm_version"]], "turbomoleio.input": [[4, 0, 0, "-", "define"], [5, 0, 0, "-", "templates"], [6, 0, 0, "-", "tests"], [4, 0, 0, "-", "utils"]], "turbomoleio.input.define": [[4, 6, 1, "", "DefineError"], [4, 6, 1, "", "DefineExpectError"], [4, 6, 1, "", "DefineIredError"], [4, 6, 1, "", "DefineParameterError"], [4, 1, 1, "", "DefineRunner"], [4, 6, 1, "", "UnsupportedDefineStateError"]], "turbomoleio.input.define.DefineRunner": [[4, 2, 1, "", "dump_command_file"], [4, 2, 1, "", "run_full"], [4, 2, 1, "", "run_generate_mo_files"], [4, 2, 1, "", "run_update_internal_coords"]], "turbomoleio.input.tests": [[6, 0, 0, "-", "test_define"], [6, 0, 0, "-", "test_utils"]], "turbomoleio.input.tests.test_define": [[6, 1, 1, "", "TestDefineRunner"], [6, 1, 1, "", "TestExceptions"], [6, 3, 1, "", "dr_data"]], "turbomoleio.input.tests.test_define.TestDefineRunner": [[6, 2, 1, "", "assert_sendline_calls"], [6, 2, 1, "", "assert_sendline_has_calls"], [6, 2, 1, "", "test_add_atomic_coordinates_from_file"], [6, 2, 1, "", "test_add_atomic_coordinates_from_file_cartesian"], [6, 2, 1, "", "test_add_cosmo"], [6, 2, 1, "", "test_close"], [6, 2, 1, "", "test_copy_mo_files_ab_mos"], [6, 2, 1, "", "test_copy_mo_files_alpha_beta"], [6, 2, 1, "", "test_copy_mo_files_error"], [6, 2, 1, "", "test_copy_mo_files_mo"], [6, 2, 1, "", "test_define_basis_sets"], [6, 2, 1, "", "test_define_core_potentials"], [6, 2, 1, "", "test_define_symmetry"], [6, 2, 1, "", "test_define_symmetry_error"], [6, 2, 1, "", "test_determine_symmetry"], [6, 2, 1, "", "test_determine_symmetry_eps"], [6, 2, 1, "", "test_dump_command_file"], [6, 2, 1, "", "test_excited_state_menu_error_not_activated"], [6, 2, 1, "", "test_excited_state_menu_frequency"], [6, 2, 1, "", "test_excited_state_menu_irrep"], [6, 2, 1, "", "test_excited_state_menu_irrep_wrong_sym"], [6, 2, 1, "", "test_excited_state_menu_polly"], [6, 2, 1, "", "test_excited_state_menu_rpas"], [6, 2, 1, "", "test_excited_state_menu_urpa"], [6, 2, 1, "", "test_excited_state_menu_urpa_error"], [6, 2, 1, "", "test_excited_state_menu_wrong_ex_method"], [6, 2, 1, "", "test_excited_state_menu_wrong_menu"], [6, 2, 1, "", "test_existing_coordinates"], [6, 2, 1, "", "test_existing_coordinates_cartesian"], [6, 2, 1, "", "test_existing_coordinates_error"], [6, 2, 1, "", "test_existing_coordinates_no_update"], [6, 2, 1, "", "test_existing_coordinates_unsupported"], [6, 2, 1, "", "test_expect"], [6, 2, 1, "", "test_expect_raise_eof"], [6, 2, 1, "", "test_expect_raise_timeout"], [6, 2, 1, "", "test_extended_hueckel_theory_menu_charge"], [6, 2, 1, "", "test_extended_hueckel_theory_menu_default"], [6, 2, 1, "", "test_extended_hueckel_theory_menu_error"], [6, 2, 1, "", "test_extended_hueckel_theory_menu_nocharge"], [6, 2, 1, "", "test_extended_hueckel_theory_menu_unpaired"], [6, 2, 1, "", "test_general_menu_ccsdt"], [6, 2, 1, "", "test_general_menu_dft"], [6, 2, 1, "", "test_general_menu_hf"], [6, 2, 1, "", "test_general_menu_wrong_method"], [6, 2, 1, "", "test_generate_internal_coordinates"], [6, 2, 1, "", "test_generate_internal_coordinates_error"], [6, 2, 1, "", "test_geometry_menu_copymo"], [6, 2, 1, "", "test_geometry_menu_incompatibility_1"], [6, 2, 1, "", "test_geometry_menu_incompatibility_2"], [6, 2, 1, "", "test_geometry_menu_new_coords_1"], [6, 2, 1, "", "test_geometry_menu_new_coords_2"], [6, 2, 1, "", "test_geometry_menu_new_coords_3"], [6, 2, 1, "", "test_geometry_menu_new_coords_4"], [6, 2, 1, "", "test_geometry_menu_no_new_coords"], [6, 2, 1, "", "test_get_bin_path"], [6, 2, 1, "", "test_go_to_general_menu"], [6, 2, 1, "", "test_init"], [6, 2, 1, "", "test_initialize_control_1"], [6, 2, 1, "", "test_initialize_control_2"], [6, 2, 1, "", "test_initialize_control_incompatibility"], [6, 2, 1, "", "test_is_alive"], [6, 2, 1, "", "test_postprocess"], [6, 2, 1, "", "test_quit_general_menu"], [6, 2, 1, "", "test_run_full_1"], [6, 2, 1, "", "test_run_full_2"], [6, 2, 1, "", "test_run_generate_mo_files"], [6, 2, 1, "", "test_run_generate_mo_files_sym"], [6, 2, 1, "", "test_run_update_internal_coords"], [6, 2, 1, "", "test_run_update_internal_coords_error"], [6, 2, 1, "", "test_sendline"], [6, 2, 1, "", "test_set_basis"], [6, 2, 1, "", "test_set_basis_error"], [6, 2, 1, "", "test_set_basis_error_2"], [6, 2, 1, "", "test_set_basis_error_3"], [6, 2, 1, "", "test_set_dft_options_no_dft"], [6, 2, 1, "", "test_set_dft_options_use_dft"], [6, 2, 1, "", "test_set_dft_options_wrong_xc"], [6, 2, 1, "", "test_set_ecp_error"], [6, 2, 1, "", "test_set_ecp_error_2"], [6, 2, 1, "", "test_set_ecp_error_3"], [6, 2, 1, "", "test_set_metric"], [6, 2, 1, "", "test_set_mo_from_control_file"], [6, 2, 1, "", "test_set_mo_from_control_file_2"], [6, 2, 1, "", "test_set_mo_from_control_file_error"], [6, 2, 1, "", "test_set_mo_from_control_file_longpath"], [6, 2, 1, "", "test_set_mp2_options"], [6, 2, 1, "", "test_set_mp2_options_f12"], [6, 2, 1, "", "test_set_mp2_options_geoopt"], [6, 2, 1, "", "test_set_mp2_options_mp2"], [6, 2, 1, "", "test_set_mp2_options_mp2_error"], [6, 2, 1, "", "test_set_ri_state"], [6, 2, 1, "", "test_set_ri_state_marij"], [6, 2, 1, "", "test_set_scf_options"], [6, 2, 1, "", "test_skip_atomic_attribute_menu"], [6, 2, 1, "", "test_skip_atomic_attribute_menu_error"], [6, 2, 1, "", "test_skip_atomic_attribute_menu_internal"], [6, 2, 1, "", "test_switch_to_atomic_attribute_menu"], [6, 2, 1, "", "test_switch_to_atomic_attribute_menu_internal"], [6, 2, 1, "", "test_switch_to_atomic_attribute_menu_internal_error"], [6, 2, 1, "", "test_switch_to_molecular_orbital_definition_menu"], [6, 2, 1, "", "test_switch_to_scf_menu"]], "turbomoleio.input.tests.test_define.TestExceptions": [[6, 2, 1, "", "test_create"]], "turbomoleio.input.tests.test_utils": [[6, 3, 1, "", "test_get_define_template"], [6, 3, 1, "", "test_validate_parameters"]], "turbomoleio.input.utils": [[4, 6, 1, "", "ParametersValidationError"], [4, 3, 1, "", "ex_setter"], [4, 3, 1, "", "get_define_template"], [4, 7, 1, "", "schema_define_params"], [4, 3, 1, "", "validate_parameters"]], "turbomoleio.output": [[7, 0, 0, "-", "data"], [7, 0, 0, "-", "files"], [7, 0, 0, "-", "parser"], [7, 0, 0, "-", "states"], [8, 0, 0, "-", "tests"]], "turbomoleio.output.data": [[7, 1, 1, "", "AoforceNumericalIntegrationData"], [7, 1, 1, "", "AoforceRotationalData"], [7, 1, 1, "", "AoforceVibrationalData"], [7, 1, 1, "", "BaseData"], [7, 1, 1, "", "BasisData"], [7, 1, 1, "", "CosmoData"], [7, 1, 1, "", "DFTData"], [7, 1, 1, "", "DispersionCorrectionData"], [7, 1, 1, "", "ElectrostaticMomentsData"], [7, 1, 1, "", "EscfData"], [7, 1, 1, "", "EscfIterationData"], [7, 1, 1, "", "FunctionalData"], [7, 1, 1, "", "GeometryData"], [7, 1, 1, "", "IntegralData"], [7, 1, 1, "", "MP2Data"], [7, 1, 1, "", "MP2Results"], [7, 1, 1, "", "PeriodicityData"], [7, 1, 1, "", "RelaxConvergenceData"], [7, 1, 1, "", "RelaxData"], [7, 1, 1, "", "RelaxGradientsData"], [7, 1, 1, "", "RiData"], [7, 1, 1, "", "RunData"], [7, 1, 1, "", "ScfData"], [7, 1, 1, "", "ScfEnergiesData"], [7, 1, 1, "", "ScfIterationData"], [7, 1, 1, "", "SingleExcitation"], [7, 1, 1, "", "SmearingData"], [7, 1, 1, "", "SpinData"], [7, 1, 1, "", "StatptData"], [7, 1, 1, "", "SymmetryData"], [7, 1, 1, "", "TurbomoleData"]], "turbomoleio.output.data.AoforceNumericalIntegrationData": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.data.AoforceRotationalData": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.data.AoforceVibrationalData": [[7, 2, 1, "", "from_parser"], [7, 2, 1, "", "get_freqs_df"], [7, 2, 1, "", "n_negative_freqs"], [7, 2, 1, "", "n_positive_freqs"], [7, 2, 1, "", "n_zero_freqs"]], "turbomoleio.output.data.BaseData": [[7, 2, 1, "", "from_file"], [7, 2, 1, "", "from_parser"], [7, 2, 1, "", "from_string"]], "turbomoleio.output.data.BasisData": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.data.CosmoData": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.data.DFTData": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.data.DispersionCorrectionData": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.data.ElectrostaticMomentsData": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.data.EscfData": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.data.EscfIterationData": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.data.FunctionalData": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.data.GeometryData": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.data.IntegralData": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.data.MP2Data": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.data.MP2Results": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.data.PeriodicityData": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.data.RelaxConvergenceData": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.data.RelaxData": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.data.RelaxGradientsData": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.data.RiData": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.data.RunData": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.data.ScfData": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.data.ScfEnergiesData": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.data.ScfIterationData": [[7, 2, 1, "", "from_parser"], [7, 2, 1, "", "plot_energies"]], "turbomoleio.output.data.SmearingData": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.data.SpinData": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.data.StatptData": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.data.SymmetryData": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.data.TurbomoleData": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.files": [[7, 1, 1, "", "AoforceOutput"], [7, 1, 1, "", "EgradOutput"], [7, 1, 1, "", "EscfOnlyOutput"], [7, 1, 1, "", "EscfOutput"], [7, 1, 1, "", "GradOutput"], [7, 1, 1, "", "JobexOutput"], [7, 1, 1, "", "MP2Output"], [7, 1, 1, "", "RelaxOutput"], [7, 1, 1, "", "Ricc2Output"], [7, 1, 1, "", "ScfOutput"], [7, 1, 1, "", "StatptOutput"]], "turbomoleio.output.files.AoforceOutput": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.files.EgradOutput": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.files.EscfOnlyOutput": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.files.EscfOutput": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.files.GradOutput": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.files.JobexOutput": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.files.MP2Output": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.files.RelaxOutput": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.files.Ricc2Output": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.files.ScfOutput": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.files.StatptOutput": [[7, 2, 1, "", "from_parser"]], "turbomoleio.output.parser": [[7, 1, 1, "", "Parser"], [7, 3, 1, "", "convert_float"], [7, 3, 1, "", "convert_int"], [7, 3, 1, "", "convert_time_string"]], "turbomoleio.output.parser.Parser": [[7, 2, 1, "", "all_done"], [7, 2, 1, "", "aoforce_analysis"], [7, 2, 1, "", "aoforce_numerical_integration"], [7, 2, 1, "", "basis"], [7, 2, 1, "", "centers"], [7, 2, 1, "", "coordinates"], [7, 2, 1, "", "cosmo_header"], [7, 2, 1, "", "cosmo_results"], [7, 2, 1, "", "density_functional_data"], [7, 2, 1, "", "dftd"], [7, 2, 1, "", "egrad_excited_state"], [7, 2, 1, "", "electrostatic_moments"], [7, 2, 1, "", "escf_excitations"], [7, 2, 1, "", "escf_gs_total_en"], [7, 2, 1, "", "escf_iterations"], [7, 2, 1, "", "fermi"], [7, 2, 1, "", "from_file"], [7, 2, 1, "", "get_split_jobex_parsers"], [7, 2, 1, "", "get_value"], [7, 2, 1, "", "gradient"], [7, 2, 1, "", "grep_line"], [7, 2, 1, "", "header"], [7, 2, 1, "", "integral"], [7, 2, 1, "", "is_uhf"], [7, 2, 1, "", "mp2_data"], [7, 2, 1, "", "mp2_results"], [7, 2, 1, "", "periodicity_data"], [7, 2, 1, "", "pre_escf_run"], [7, 2, 1, "", "pre_scf_run"], [7, 2, 1, "", "rdgrad_memory"], [7, 2, 1, "", "relax_conv_info"], [7, 2, 1, "", "relax_gradient_values"], [7, 2, 1, "", "relax_info"], [7, 2, 1, "", "rij_info"], [7, 2, 1, "", "riper_scf_energies"], [7, 2, 1, "", "s2"], [7, 2, 1, "", "scf_energies"], [7, 2, 1, "", "scf_iterations"], [7, 2, 1, "", "statpt_info"], [7, 4, 1, "", "string"], [7, 2, 1, "", "symmetry"], [7, 2, 1, "", "timings"]], "turbomoleio.output.states": [[7, 1, 1, "", "EigerOutput"], [7, 1, 1, "", "EigerRunner"], [7, 1, 1, "", "State"], [7, 1, 1, "", "States"], [7, 3, 1, "", "get_mos_energies"]], "turbomoleio.output.states.EigerOutput": [[7, 2, 1, "", "compare_states"], [7, 2, 1, "", "from_file"], [7, 2, 1, "", "from_string"]], "turbomoleio.output.states.EigerRunner": [[7, 2, 1, "", "get_eiger_output"], [7, 2, 1, "", "run"], [7, 2, 1, "", "to_file"]], "turbomoleio.output.states.State": [[7, 2, 1, "", "as_dict"], [7, 2, 1, "", "from_dict"], [7, 4, 1, "", "has_fractional_occ"], [7, 4, 1, "", "max_occupation"]], "turbomoleio.output.states.States": [[7, 2, 1, "", "as_dict"], [7, 4, 1, "", "eigenvalues"], [7, 2, 1, "", "filter_states"], [7, 2, 1, "", "from_file"], [7, 4, 1, "", "gap"], [7, 2, 1, "", "generate_lowest_filled_states"], [7, 2, 1, "", "get_shells"], [7, 4, 1, "", "has_fractional_occ"], [7, 4, 1, "", "has_hole"], [7, 4, 1, "", "homo"], [7, 4, 1, "", "homo_index"], [7, 2, 1, "", "insert"], [7, 4, 1, "", "irrep_indices"], [7, 4, 1, "", "irreps"], [7, 4, 1, "", "is_uhf"], [7, 4, 1, "", "lumo"], [7, 4, 1, "", "lumo_index"], [7, 4, 1, "", "n_states"], [7, 4, 1, "", "occupations"], [7, 4, 1, "", "spins"], [7, 4, 1, "", "total_electrons"]], "turbomoleio.output.tests": [[8, 0, 0, "-", "test_data"], [8, 0, 0, "-", "test_files"], [8, 0, 0, "-", "test_parser"], [8, 0, 0, "-", "test_states"]], "turbomoleio.output.tests.test_data": [[8, 3, 1, "", "test_AoforceVibrationalData"], [8, 3, 1, "", "test_ScfIterationData"], [8, 3, 1, "", "test_str"]], "turbomoleio.output.tests.test_files": [[8, 1, 1, "", "TestFiles"], [8, 3, 1, "", "cls_dict_path"], [8, 3, 1, "", "generate_files"]], "turbomoleio.output.tests.test_files.TestFiles": [[8, 2, 1, "", "test_properties"]], "turbomoleio.output.tests.test_parser": [[8, 1, 1, "", "TestFunctions"], [8, 1, 1, "", "TestParser"], [8, 3, 1, "", "generate_files"], [8, 3, 1, "", "method"], [8, 3, 1, "", "parser_and_dict"]], "turbomoleio.output.tests.test_parser.TestFunctions": [[8, 2, 1, "", "test_convert_float"], [8, 2, 1, "", "test_convert_int"], [8, 2, 1, "", "test_convert_time_string"]], "turbomoleio.output.tests.test_parser.TestParser": [[8, 2, 1, "", "test_fail_all_done_check"], [8, 2, 1, "", "test_get_split_jobex_parsers"], [8, 2, 1, "", "test_get_value"], [8, 2, 1, "", "test_grep_line"], [8, 2, 1, "", "test_properties"]], "turbomoleio.output.tests.test_states": [[8, 3, 1, "", "test_closed"], [8, 3, 1, "", "test_eiger_runner"], [8, 3, 1, "", "test_error_homo"], [8, 3, 1, "", "test_hole"], [8, 3, 1, "", "test_no_empty_states"], [8, 3, 1, "", "test_parsing_failures"], [8, 3, 1, "", "test_state"], [8, 3, 1, "", "test_uhf"]], "turbomoleio.testfiles": [[9, 0, 0, "-", "utils"]], "turbomoleio.testfiles.utils": [[9, 1, 1, "", "ItestConfig"], [9, 6, 1, "", "ItestError"], [9, 3, 1, "", "assert_MSONable"], [9, 3, 1, "", "assert_almost_equal"], [9, 3, 1, "", "compare_differences"], [9, 3, 1, "", "generate_control_for_test"], [9, 3, 1, "", "generate_reference_out_parser_files"], [9, 3, 1, "", "generate_reference_output"], [9, 3, 1, "", "get_control_filepath"], [9, 3, 1, "", "get_control_integration"], [9, 3, 1, "", "get_sp"], [9, 3, 1, "", "get_tfp"], [9, 3, 1, "", "gisnan"], [9, 3, 1, "", "has_matplotlib"], [9, 3, 1, "", "run_itest"], [9, 3, 1, "", "temp_dir"], [9, 3, 1, "", "touch_file"]], "turbomoleio.testfiles.utils.ItestConfig": [[9, 5, 1, "", "define_timeout"], [9, 5, 1, "", "delete_tmp_dir"], [9, 5, 1, "", "dryrun"], [9, 5, 1, "", "dryrun_fpath"], [9, 5, 1, "", "dryrun_use_ref_control"], [9, 5, 1, "", "generate_ref"], [9, 5, 1, "", "tol"]]}, "objtypes": {"0": "py:module", "1": "py:class", "2": "py:method", "3": "py:function", "4": "py:property", "5": "py:attribute", "6": "py:exception", "7": "py:data"}, "objnames": {"0": ["py", "module", "Python module"], "1": ["py", "class", "Python class"], "2": ["py", "method", "Python method"], "3": ["py", "function", "Python function"], "4": ["py", "property", "Python property"], "5": ["py", "attribute", "Python attribute"], "6": ["py", "exception", "Python exception"], "7": ["py", "data", "Python data"]}, "titleterms": {"turbomoleio": [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 21], "packag": [1, 2, 3, 4, 5, 6, 7, 8, 9], "subpackag": [1, 2, 4, 7], "modul": [1, 2, 3, 4, 5, 6, 7, 8, 9], "content": [1, 2, 3, 4, 5, 6, 7, 8, 9], "core": [2, 3], "submodul": [2, 3, 4, 6, 7, 8, 9], "base": 2, "control": [2, 14], "datagroup": [2, 14], "molecul": 2, "period": [2, 13], "symmetri": 2, "util": [2, 4, 9], "test": [3, 6, 8, 12, 16, 18, 19], "test_control": 3, "test_datagroup": 3, "test_molecul": 3, "test_period": 3, "test_util": [3, 6], "input": [4, 5, 6], "defin": [4, 15, 16], "templat": 5, "test_defin": 6, "output": [7, 8, 18, 19, 23], "data": [7, 14, 23], "file": [7, 13, 14, 23], "parser": 7, "state": [7, 23], "test_data": 8, "test_fil": 8, "test_pars": 8, "test_stat": 8, "testfil": 9, "appendix": 10, "report": 11, "bug": [11, 12], "changelog": 12, "releas": 12, "1": 12, "3": 12, "0": 12, "feb": 12, "24": 12, "2022": 12, "develop": [12, 21], "chang": [12, 19], "2": 12, "16": 12, "15": 12, "featur": 12, "ad": 12, "sep": 12, "20": 12, "2021": 12, "fix": 12, "mar": 12, "11": 12, "The": [13, 14, 15, 19, 23], "coord": 13, "system": 13, "group": 14, "object": [14, 23], "access": 14, "valu": 14, "modifi": 14, "run": 15, "definerunn": 15, "paramet": 15, "valid": [15, 16], "runner": 16, "contribut": [17, 21], "log": [18, 23], "pars": [18, 19, 23], "new": [18, 19], "quantiti": 18, "type": 18, "suit": 19, "unit": 19, "integr": 19, "write": 19, "turbomol": 19, "version": [19, 20], "standard": 19, "procedur": 19, "backward": 20, "compat": 20, "user": 21, "guid": 21, "addit": 21, "inform": 21, "indic": 21, "tabl": 21, "licens": 22, "quick": 23, "start": 23, "overal": 23, "structur": 23, "common": 23}, "envversion": {"sphinx.domains.c": 3, "sphinx.domains.changeset": 1, "sphinx.domains.citation": 1, "sphinx.domains.cpp": 9, "sphinx.domains.index": 1, "sphinx.domains.javascript": 3, "sphinx.domains.math": 2, "sphinx.domains.python": 4, "sphinx.domains.rst": 2, "sphinx.domains.std": 2, "sphinx.ext.intersphinx": 1, "sphinx.ext.todo": 2, "sphinx.ext.viewcode": 1, "sphinx": 58}, "alltitles": {"turbomoleio": [[0, "turbomoleio"], [21, "turbomoleio"]], "turbomoleio package": [[1, "turbomoleio-package"]], "Subpackages": [[1, "subpackages"], [2, "subpackages"], [4, "subpackages"], [7, "subpackages"]], "Module contents": [[1, "module-turbomoleio"], [2, "module-turbomoleio.core"], [3, "module-turbomoleio.core.tests"], [4, "module-turbomoleio.input"], [5, "module-turbomoleio.input.templates"], [6, "module-turbomoleio.input.tests"], [7, "module-turbomoleio.output"], [8, "module-turbomoleio.output.tests"], [9, "module-turbomoleio.testfiles"]], "turbomoleio.core package": [[2, "turbomoleio-core-package"]], "Submodules": [[2, "submodules"], [3, "submodules"], [4, "submodules"], [6, "submodules"], [7, "submodules"], [8, "submodules"], [9, "submodules"]], "turbomoleio.core.base module": [[2, "module-turbomoleio.core.base"]], "turbomoleio.core.control module": [[2, "module-turbomoleio.core.control"]], "turbomoleio.core.datagroups module": [[2, "module-turbomoleio.core.datagroups"]], "turbomoleio.core.molecule module": [[2, "module-turbomoleio.core.molecule"]], "turbomoleio.core.periodic module": [[2, "module-turbomoleio.core.periodic"]], "turbomoleio.core.symmetry module": [[2, "module-turbomoleio.core.symmetry"]], "turbomoleio.core.utils module": [[2, "module-turbomoleio.core.utils"]], "turbomoleio.core.tests package": [[3, "turbomoleio-core-tests-package"]], "turbomoleio.core.tests.test_control module": [[3, "module-turbomoleio.core.tests.test_control"]], "turbomoleio.core.tests.test_datagroups module": [[3, "module-turbomoleio.core.tests.test_datagroups"]], "turbomoleio.core.tests.test_molecule module": [[3, "module-turbomoleio.core.tests.test_molecule"]], "turbomoleio.core.tests.test_periodic module": [[3, "module-turbomoleio.core.tests.test_periodic"]], "turbomoleio.core.tests.test_utils module": [[3, "module-turbomoleio.core.tests.test_utils"]], "turbomoleio.input package": [[4, "turbomoleio-input-package"]], "turbomoleio.input.define module": [[4, "module-turbomoleio.input.define"]], "turbomoleio.input.utils module": [[4, "module-turbomoleio.input.utils"]], "turbomoleio.input.templates package": [[5, "turbomoleio-input-templates-package"]], "turbomoleio.input.tests package": [[6, "turbomoleio-input-tests-package"]], "turbomoleio.input.tests.test_define module": [[6, "module-turbomoleio.input.tests.test_define"]], "turbomoleio.input.tests.test_utils module": [[6, "module-turbomoleio.input.tests.test_utils"]], "turbomoleio.output package": [[7, "turbomoleio-output-package"]], "turbomoleio.output.data module": [[7, "module-turbomoleio.output.data"]], "turbomoleio.output.files module": [[7, "module-turbomoleio.output.files"]], "turbomoleio.output.parser module": [[7, "module-turbomoleio.output.parser"]], "turbomoleio.output.states module": [[7, "module-turbomoleio.output.states"]], "turbomoleio.output.tests package": [[8, "turbomoleio-output-tests-package"]], "turbomoleio.output.tests.test_data module": [[8, "module-turbomoleio.output.tests.test_data"]], "turbomoleio.output.tests.test_files module": [[8, "module-turbomoleio.output.tests.test_files"]], "turbomoleio.output.tests.test_parser module": [[8, "module-turbomoleio.output.tests.test_parser"]], "turbomoleio.output.tests.test_states module": [[8, "module-turbomoleio.output.tests.test_states"]], "turbomoleio.testfiles package": [[9, "turbomoleio-testfiles-package"]], "turbomoleio.testfiles.utils module": [[9, "module-turbomoleio.testfiles.utils"]], "Appendix": [[10, "appendix"]], "Reporting bugs": [[11, "reporting-bugs"]], "Changelog": [[12, "changelog"]], "Release 1.3.0 (Feb 24, 2022)": [[12, "release-1-3-0-feb-24-2022"]], "Developer changes": [[12, "developer-changes"]], "Release 1.2.0 (Feb 16, 2022)": [[12, "release-1-2-0-feb-16-2022"]], "Release 1.1.1 (Feb 15, 2022)": [[12, "release-1-1-1-feb-15-2022"]], "Features added": [[12, "features-added"], [12, "id1"]], "Release 1.1.0 (Sep 20, 2021)": [[12, "release-1-1-0-sep-20-2021"]], "Bug fixing": [[12, "bug-fixing"]], "Testing and development": [[12, "testing-and-development"]], "Release 1.0.0 (Mar 11, 2021)": [[12, "release-1-0-0-mar-11-2021"]], "The coord file": [[13, "the-coord-file"]], "Periodic systems": [[13, "periodic-systems"]], "The data group files": [[14, "the-data-group-files"]], "The DataGroups object": [[14, "the-datagroups-object"]], "Accessing a data group value": [[14, "accessing-a-data-group-value"]], "Modifying a data group value": [[14, "modifying-a-data-group-value"]], "The Control object": [[14, "the-control-object"]], "Running define": [[15, "running-define"]], "The DefineRunner parameters": [[15, "the-definerunner-parameters"]], "Validation": [[15, "validation"], [16, "validation"]], "Define runner": [[16, "define-runner"]], "Tests": [[16, "tests"], [18, "tests"]], "Contributing": [[17, "contributing"]], "Output logs parsing": [[18, "output-logs-parsing"]], "Parsing a new quantity": [[18, "parsing-a-new-quantity"]], "Parsing a new type of log": [[18, "parsing-a-new-type-of-log"]], "Testing": [[19, "testing"]], "The test suite": [[19, "the-test-suite"]], "Unit tests": [[19, "unit-tests"]], "Integration tests": [[19, "integration-tests"], [19, "id1"]], "Writing new tests": [[19, "writing-new-tests"]], "Tests for output parsing": [[19, "tests-for-output-parsing"]], "Turbomole version change": [[19, "turbomole-version-change"]], "Standard procedure": [[19, "standard-procedure"]], "Unit-tests for output parsing": [[19, "unit-tests-for-output-parsing"]], "Versioning": [[20, "versioning"]], "Backward-compatibility": [[20, "backward-compatibility"]], "User guide": [[21, null]], "Contributing to turbomoleio": [[21, "contributing-to-turbomoleio"]], "Developer guide": [[21, null]], "Additional information": [[21, "additional-information"], [21, null]], "Indices and tables": [[21, "indices-and-tables"]], "License": [[22, "license"]], "Outputs parsing": [[23, "outputs-parsing"]], "The log files": [[23, "the-log-files"]], "Quick Start": [[23, "quick-start"]], "Overall Structure": [[23, "overall-structure"]], "Data and File Objects": [[23, "data-and-file-objects"]], "Common data objects": [[23, "common-data-objects"]], "File data objects": [[23, "file-data-objects"]], "The States object": [[23, "the-states-object"]]}, "indexentries": {"module": [[1, "module-turbomoleio"], [2, "module-turbomoleio.core"], [2, "module-turbomoleio.core.base"], [2, "module-turbomoleio.core.control"], [2, "module-turbomoleio.core.datagroups"], [2, "module-turbomoleio.core.molecule"], [2, "module-turbomoleio.core.periodic"], [2, "module-turbomoleio.core.symmetry"], [2, "module-turbomoleio.core.utils"], [3, "module-turbomoleio.core.tests"], [3, "module-turbomoleio.core.tests.test_control"], [3, "module-turbomoleio.core.tests.test_datagroups"], [3, "module-turbomoleio.core.tests.test_molecule"], [3, "module-turbomoleio.core.tests.test_periodic"], [3, "module-turbomoleio.core.tests.test_utils"], [4, "module-turbomoleio.input"], [4, "module-turbomoleio.input.define"], [4, "module-turbomoleio.input.utils"], [5, "module-turbomoleio.input.templates"], [6, "module-turbomoleio.input.tests"], [6, "module-turbomoleio.input.tests.test_define"], [6, "module-turbomoleio.input.tests.test_utils"], [7, "module-turbomoleio.output"], [7, "module-turbomoleio.output.data"], [7, "module-turbomoleio.output.files"], [7, "module-turbomoleio.output.parser"], [7, "module-turbomoleio.output.states"], [8, "module-turbomoleio.output.tests"], [8, "module-turbomoleio.output.tests.test_data"], [8, "module-turbomoleio.output.tests.test_files"], [8, "module-turbomoleio.output.tests.test_parser"], [8, "module-turbomoleio.output.tests.test_states"], [9, "module-turbomoleio.testfiles"], [9, "module-turbomoleio.testfiles.utils"]], "turbomoleio": [[1, "module-turbomoleio"]], "basesystem (class in turbomoleio.core.base)": [[2, "turbomoleio.core.base.BaseSystem"]], "bondangle (class in turbomoleio.core.molecule)": [[2, "turbomoleio.core.molecule.BondAngle"]], "collinearbendingangle (class in turbomoleio.core.molecule)": [[2, "turbomoleio.core.molecule.CollinearBendingAngle"]], "control (class in turbomoleio.core.control)": [[2, "turbomoleio.core.control.Control"]], "datagroups (class in turbomoleio.core.datagroups)": [[2, "turbomoleio.core.datagroups.DataGroups"]], "defaults (class in turbomoleio.core.control)": [[2, "turbomoleio.core.control.Defaults"]], "dihedralangle (class in turbomoleio.core.molecule)": [[2, "turbomoleio.core.molecule.DihedralAngle"]], "distance (class in turbomoleio.core.molecule)": [[2, "turbomoleio.core.molecule.Distance"]], "energy (class in turbomoleio.core.control)": [[2, "turbomoleio.core.control.Energy"]], "gradient (class in turbomoleio.core.control)": [[2, "turbomoleio.core.control.Gradient"]], "internaldefinition (class in turbomoleio.core.molecule)": [[2, "turbomoleio.core.molecule.InternalDefinition"]], "inversedistance (class in turbomoleio.core.molecule)": [[2, "turbomoleio.core.molecule.InverseDistance"]], "metric (turbomoleio.core.control.defaults attribute)": [[2, "turbomoleio.core.control.Defaults.METRIC"]], "moleculesystem (class in turbomoleio.core.molecule)": [[2, "turbomoleio.core.molecule.MoleculeSystem"]], "outofplaneangle (class in turbomoleio.core.molecule)": [[2, "turbomoleio.core.molecule.OutOfPlaneAngle"]], "periodicsystem (class in turbomoleio.core.periodic)": [[2, "turbomoleio.core.periodic.PeriodicSystem"]], "perpendicularbendingangle (class in turbomoleio.core.molecule)": [[2, "turbomoleio.core.molecule.PerpendicularBendingAngle"]], "shells (class in turbomoleio.core.control)": [[2, "turbomoleio.core.control.Shells"]], "add_bond_angle() (turbomoleio.core.molecule.moleculesystem method)": [[2, "turbomoleio.core.molecule.MoleculeSystem.add_bond_angle"]], "add_cosmo() (turbomoleio.core.control.control method)": [[2, "turbomoleio.core.control.Control.add_cosmo"]], "add_data_group() (turbomoleio.core.datagroups.datagroups method)": [[2, "turbomoleio.core.datagroups.DataGroups.add_data_group"]], "add_dihedral() (turbomoleio.core.molecule.moleculesystem method)": [[2, "turbomoleio.core.molecule.MoleculeSystem.add_dihedral"]], "add_distance() (turbomoleio.core.molecule.moleculesystem method)": [[2, "turbomoleio.core.molecule.MoleculeSystem.add_distance"]], "adg() (in module turbomoleio.core.control)": [[2, "turbomoleio.core.control.adg"]], "adg() (turbomoleio.core.datagroups.datagroups method)": [[2, "turbomoleio.core.datagroups.DataGroups.adg"]], "as_dict() (turbomoleio.core.control.shells method)": [[2, "turbomoleio.core.control.Shells.as_dict"]], "as_dict() (turbomoleio.core.datagroups.datagroups method)": [[2, "turbomoleio.core.datagroups.DataGroups.as_dict"]], "as_dict() (turbomoleio.core.molecule.moleculesystem method)": [[2, "turbomoleio.core.molecule.MoleculeSystem.as_dict"]], "as_dict() (turbomoleio.core.periodic.periodicsystem method)": [[2, "turbomoleio.core.periodic.PeriodicSystem.as_dict"]], "cdg() (in module turbomoleio.core.control)": [[2, "turbomoleio.core.control.cdg"]], "cdg() (turbomoleio.core.datagroups.datagroups method)": [[2, "turbomoleio.core.datagroups.DataGroups.cdg"]], "change_data_group() (turbomoleio.core.datagroups.datagroups method)": [[2, "turbomoleio.core.datagroups.DataGroups.change_data_group"]], "cleanup_string() (in module turbomoleio.core.datagroups)": [[2, "turbomoleio.core.datagroups.cleanup_string"]], "compare() (turbomoleio.core.datagroups.datagroups method)": [[2, "turbomoleio.core.datagroups.DataGroups.compare"]], "compare_datagroup_string() (in module turbomoleio.core.datagroups)": [[2, "turbomoleio.core.datagroups.compare_datagroup_string"]], "compute_value() (turbomoleio.core.molecule.bondangle method)": [[2, "turbomoleio.core.molecule.BondAngle.compute_value"]], "compute_value() (turbomoleio.core.molecule.collinearbendingangle method)": [[2, "turbomoleio.core.molecule.CollinearBendingAngle.compute_value"]], "compute_value() (turbomoleio.core.molecule.dihedralangle method)": [[2, "turbomoleio.core.molecule.DihedralAngle.compute_value"]], "compute_value() (turbomoleio.core.molecule.distance method)": [[2, "turbomoleio.core.molecule.Distance.compute_value"]], "compute_value() (turbomoleio.core.molecule.internaldefinition method)": [[2, "turbomoleio.core.molecule.InternalDefinition.compute_value"]], "compute_value() (turbomoleio.core.molecule.inversedistance method)": [[2, "turbomoleio.core.molecule.InverseDistance.compute_value"]], "compute_value() (turbomoleio.core.molecule.outofplaneangle method)": [[2, "turbomoleio.core.molecule.OutOfPlaneAngle.compute_value"]], "compute_value() (turbomoleio.core.molecule.perpendicularbendingangle method)": [[2, "turbomoleio.core.molecule.PerpendicularBendingAngle.compute_value"]], "coord_lines() (turbomoleio.core.base.basesystem method)": [[2, "turbomoleio.core.base.BaseSystem.coord_lines"]], "coord_str (turbomoleio.core.molecule.bondangle attribute)": [[2, "turbomoleio.core.molecule.BondAngle.coord_str"]], "coord_str (turbomoleio.core.molecule.collinearbendingangle attribute)": [[2, "turbomoleio.core.molecule.CollinearBendingAngle.coord_str"]], "coord_str (turbomoleio.core.molecule.dihedralangle attribute)": [[2, "turbomoleio.core.molecule.DihedralAngle.coord_str"]], "coord_str (turbomoleio.core.molecule.distance attribute)": [[2, "turbomoleio.core.molecule.Distance.coord_str"]], "coord_str (turbomoleio.core.molecule.internaldefinition attribute)": [[2, "turbomoleio.core.molecule.InternalDefinition.coord_str"]], "coord_str (turbomoleio.core.molecule.inversedistance attribute)": [[2, "turbomoleio.core.molecule.InverseDistance.coord_str"]], "coord_str (turbomoleio.core.molecule.outofplaneangle attribute)": [[2, "turbomoleio.core.molecule.OutOfPlaneAngle.coord_str"]], "coord_str (turbomoleio.core.molecule.perpendicularbendingangle attribute)": [[2, "turbomoleio.core.molecule.PerpendicularBendingAngle.coord_str"]], "coord_type (turbomoleio.core.molecule.bondangle attribute)": [[2, "turbomoleio.core.molecule.BondAngle.coord_type"]], "coord_type (turbomoleio.core.molecule.collinearbendingangle attribute)": [[2, "turbomoleio.core.molecule.CollinearBendingAngle.coord_type"]], "coord_type (turbomoleio.core.molecule.dihedralangle attribute)": [[2, "turbomoleio.core.molecule.DihedralAngle.coord_type"]], "coord_type (turbomoleio.core.molecule.distance attribute)": [[2, "turbomoleio.core.molecule.Distance.coord_type"]], "coord_type (turbomoleio.core.molecule.internaldefinition attribute)": [[2, "turbomoleio.core.molecule.InternalDefinition.coord_type"]], "coord_type (turbomoleio.core.molecule.inversedistance attribute)": [[2, "turbomoleio.core.molecule.InverseDistance.coord_type"]], "coord_type (turbomoleio.core.molecule.outofplaneangle attribute)": [[2, "turbomoleio.core.molecule.OutOfPlaneAngle.coord_type"]], "coord_type (turbomoleio.core.molecule.perpendicularbendingangle attribute)": [[2, "turbomoleio.core.molecule.PerpendicularBendingAngle.coord_type"]], "cpc() (in module turbomoleio.core.control)": [[2, "turbomoleio.core.control.cpc"]], "cpc() (turbomoleio.core.control.control method)": [[2, "turbomoleio.core.control.Control.cpc"]], "define_quit() (in module turbomoleio.core.utils)": [[2, "turbomoleio.core.utils.define_quit"]], "delta_e (turbomoleio.core.control.energy property)": [[2, "turbomoleio.core.control.Energy.delta_e"]], "empty() (turbomoleio.core.datagroups.datagroups class method)": [[2, "turbomoleio.core.datagroups.DataGroups.empty"]], "energy (turbomoleio.core.control.control property)": [[2, "turbomoleio.core.control.Control.energy"]], "from_dict() (turbomoleio.core.control.shells class method)": [[2, "turbomoleio.core.control.Shells.from_dict"]], "from_dict() (turbomoleio.core.datagroups.datagroups class method)": [[2, "turbomoleio.core.datagroups.DataGroups.from_dict"]], "from_dict() (turbomoleio.core.molecule.moleculesystem class method)": [[2, "turbomoleio.core.molecule.MoleculeSystem.from_dict"]], "from_dict() (turbomoleio.core.periodic.periodicsystem class method)": [[2, "turbomoleio.core.periodic.PeriodicSystem.from_dict"]], "from_file() (turbomoleio.core.control.control class method)": [[2, "turbomoleio.core.control.Control.from_file"]], "from_file() (turbomoleio.core.control.energy class method)": [[2, "turbomoleio.core.control.Energy.from_file"]], "from_file() (turbomoleio.core.control.gradient class method)": [[2, "turbomoleio.core.control.Gradient.from_file"]], "from_file() (turbomoleio.core.control.shells class method)": [[2, "turbomoleio.core.control.Shells.from_file"]], "from_file() (turbomoleio.core.datagroups.datagroups class method)": [[2, "turbomoleio.core.datagroups.DataGroups.from_file"]], "from_file() (turbomoleio.core.molecule.moleculesystem class method)": [[2, "turbomoleio.core.molecule.MoleculeSystem.from_file"]], "from_file() (turbomoleio.core.periodic.periodicsystem class method)": [[2, "turbomoleio.core.periodic.PeriodicSystem.from_file"]], "from_metric() (turbomoleio.core.control.control class method)": [[2, "turbomoleio.core.control.Control.from_metric"]], "from_string() (turbomoleio.core.control.energy class method)": [[2, "turbomoleio.core.control.Energy.from_string"]], "from_string() (turbomoleio.core.control.gradient class method)": [[2, "turbomoleio.core.control.Gradient.from_string"]], "from_string() (turbomoleio.core.control.shells class method)": [[2, "turbomoleio.core.control.Shells.from_string"]], "from_string() (turbomoleio.core.molecule.internaldefinition class method)": [[2, "turbomoleio.core.molecule.InternalDefinition.from_string"]], "from_string() (turbomoleio.core.molecule.moleculesystem class method)": [[2, "turbomoleio.core.molecule.MoleculeSystem.from_string"]], "from_string() (turbomoleio.core.periodic.periodicsystem class method)": [[2, "turbomoleio.core.periodic.PeriodicSystem.from_string"]], "get_charge() (turbomoleio.core.control.control method)": [[2, "turbomoleio.core.control.Control.get_charge"]], "get_coord_lines() (in module turbomoleio.core.base)": [[2, "turbomoleio.core.base.get_coord_lines"]], "get_int_def_inconsistencies() (turbomoleio.core.molecule.moleculesystem method)": [[2, "turbomoleio.core.molecule.MoleculeSystem.get_int_def_inconsistencies"]], "get_mol_and_indices_frozen() (in module turbomoleio.core.base)": [[2, "turbomoleio.core.base.get_mol_and_indices_frozen"]], "get_shells() (turbomoleio.core.control.control method)": [[2, "turbomoleio.core.control.Control.get_shells"]], "get_subclass_from_str() (turbomoleio.core.molecule.internaldefinition static method)": [[2, "turbomoleio.core.molecule.InternalDefinition.get_subclass_from_str"]], "get_subfiles_list() (turbomoleio.core.control.control method)": [[2, "turbomoleio.core.control.Control.get_subfiles_list"]], "get_tm_version() (in module turbomoleio.core.utils)": [[2, "turbomoleio.core.utils.get_tm_version"]], "gradient (turbomoleio.core.control.control property)": [[2, "turbomoleio.core.control.Control.gradient"]], "has_inconsistencies() (turbomoleio.core.molecule.moleculesystem method)": [[2, "turbomoleio.core.molecule.MoleculeSystem.has_inconsistencies"]], "irreps (turbomoleio.core.control.shells property)": [[2, "turbomoleio.core.control.Shells.irreps"]], "is_uhf (turbomoleio.core.control.control property)": [[2, "turbomoleio.core.control.Control.is_uhf"]], "is_valid() (turbomoleio.core.molecule.internaldefinition method)": [[2, "turbomoleio.core.molecule.InternalDefinition.is_valid"]], "kdg() (in module turbomoleio.core.control)": [[2, "turbomoleio.core.control.kdg"]], "kdg() (turbomoleio.core.datagroups.datagroups method)": [[2, "turbomoleio.core.datagroups.DataGroups.kdg"]], "kill_data_group() (turbomoleio.core.datagroups.datagroups method)": [[2, "turbomoleio.core.datagroups.DataGroups.kill_data_group"]], "last_grad_max (turbomoleio.core.control.gradient property)": [[2, "turbomoleio.core.control.Gradient.last_grad_max"]], "last_grad_norm (turbomoleio.core.control.gradient property)": [[2, "turbomoleio.core.control.Gradient.last_grad_norm"]], "max_gradients (turbomoleio.core.control.gradient property)": [[2, "turbomoleio.core.control.Gradient.max_gradients"]], "mdgo() (in module turbomoleio.core.control)": [[2, "turbomoleio.core.control.mdgo"]], "mdgo() (turbomoleio.core.datagroups.datagroups method)": [[2, "turbomoleio.core.datagroups.DataGroups.mdgo"]], "modify_data_group_options() (turbomoleio.core.datagroups.datagroups method)": [[2, "turbomoleio.core.datagroups.DataGroups.modify_data_group_options"]], "molecule (turbomoleio.core.molecule.moleculesystem property)": [[2, "turbomoleio.core.molecule.MoleculeSystem.molecule"]], "n_atoms (turbomoleio.core.molecule.bondangle attribute)": [[2, "turbomoleio.core.molecule.BondAngle.n_atoms"]], "n_atoms (turbomoleio.core.molecule.collinearbendingangle attribute)": [[2, "turbomoleio.core.molecule.CollinearBendingAngle.n_atoms"]], "n_atoms (turbomoleio.core.molecule.dihedralangle attribute)": [[2, "turbomoleio.core.molecule.DihedralAngle.n_atoms"]], "n_atoms (turbomoleio.core.molecule.distance attribute)": [[2, "turbomoleio.core.molecule.Distance.n_atoms"]], "n_atoms (turbomoleio.core.molecule.internaldefinition attribute)": [[2, "turbomoleio.core.molecule.InternalDefinition.n_atoms"]], "n_atoms (turbomoleio.core.molecule.inversedistance attribute)": [[2, "turbomoleio.core.molecule.InverseDistance.n_atoms"]], "n_atoms (turbomoleio.core.molecule.outofplaneangle attribute)": [[2, "turbomoleio.core.molecule.OutOfPlaneAngle.n_atoms"]], "n_atoms (turbomoleio.core.molecule.perpendicularbendingangle attribute)": [[2, "turbomoleio.core.molecule.PerpendicularBendingAngle.n_atoms"]], "n_steps (turbomoleio.core.control.energy property)": [[2, "turbomoleio.core.control.Energy.n_steps"]], "n_steps (turbomoleio.core.control.gradient property)": [[2, "turbomoleio.core.control.Gradient.n_steps"]], "ndg (turbomoleio.core.datagroups.datagroups property)": [[2, "turbomoleio.core.datagroups.DataGroups.ndg"]], "norms (turbomoleio.core.control.gradient property)": [[2, "turbomoleio.core.control.Gradient.norms"]], "number_of_data_groups (turbomoleio.core.datagroups.datagroups property)": [[2, "turbomoleio.core.datagroups.DataGroups.number_of_data_groups"]], "plot() (turbomoleio.core.control.energy method)": [[2, "turbomoleio.core.control.Energy.plot"]], "plot() (turbomoleio.core.control.gradient method)": [[2, "turbomoleio.core.control.Gradient.plot"]], "remove_comments() (in module turbomoleio.core.datagroups)": [[2, "turbomoleio.core.datagroups.remove_comments"]], "remove_dg_from_list() (in module turbomoleio.core.datagroups)": [[2, "turbomoleio.core.datagroups.remove_dg_from_list"]], "remove_last_energy() (turbomoleio.core.control.control method)": [[2, "turbomoleio.core.control.Control.remove_last_energy"]], "remove_last_gradient() (turbomoleio.core.control.control method)": [[2, "turbomoleio.core.control.Control.remove_last_gradient"]], "sdg() (in module turbomoleio.core.control)": [[2, "turbomoleio.core.control.sdg"]], "sdg() (turbomoleio.core.datagroups.datagroups method)": [[2, "turbomoleio.core.datagroups.DataGroups.sdg"]], "sdgo() (in module turbomoleio.core.control)": [[2, "turbomoleio.core.control.sdgo"]], "sdgo() (turbomoleio.core.datagroups.datagroups method)": [[2, "turbomoleio.core.datagroups.DataGroups.sdgo"]], "set_disp() (turbomoleio.core.control.control method)": [[2, "turbomoleio.core.control.Control.set_disp"]], "show_data_group() (turbomoleio.core.datagroups.datagroups method)": [[2, "turbomoleio.core.datagroups.DataGroups.show_data_group"]], "show_data_group_option() (turbomoleio.core.datagroups.datagroups method)": [[2, "turbomoleio.core.datagroups.DataGroups.show_data_group_option"]], "show_subfile_fname() (turbomoleio.core.datagroups.datagroups method)": [[2, "turbomoleio.core.datagroups.DataGroups.show_subfile_fname"]], "split_string_to_dg_list() (in module turbomoleio.core.datagroups)": [[2, "turbomoleio.core.datagroups.split_string_to_dg_list"]], "structure (turbomoleio.core.periodic.periodicsystem property)": [[2, "turbomoleio.core.periodic.PeriodicSystem.structure"]], "to_coord_file() (turbomoleio.core.base.basesystem method)": [[2, "turbomoleio.core.base.BaseSystem.to_coord_file"]], "to_coord_string() (turbomoleio.core.base.basesystem method)": [[2, "turbomoleio.core.base.BaseSystem.to_coord_string"]], "to_coord_string() (turbomoleio.core.molecule.moleculesystem method)": [[2, "turbomoleio.core.molecule.MoleculeSystem.to_coord_string"]], "to_coord_string() (turbomoleio.core.periodic.periodicsystem method)": [[2, "turbomoleio.core.periodic.PeriodicSystem.to_coord_string"]], "to_datagroup() (turbomoleio.core.control.shells method)": [[2, "turbomoleio.core.control.Shells.to_datagroup"]], "to_file() (turbomoleio.core.base.basesystem method)": [[2, "turbomoleio.core.base.BaseSystem.to_file"]], "to_file() (turbomoleio.core.control.control method)": [[2, "turbomoleio.core.control.Control.to_file"]], "to_file() (turbomoleio.core.datagroups.datagroups method)": [[2, "turbomoleio.core.datagroups.DataGroups.to_file"]], "to_string() (turbomoleio.core.molecule.internaldefinition method)": [[2, "turbomoleio.core.molecule.InternalDefinition.to_string"]], "total_electrons (turbomoleio.core.control.shells property)": [[2, "turbomoleio.core.control.Shells.total_electrons"]], "turbomoleio.core": [[2, "module-turbomoleio.core"]], "turbomoleio.core.base": [[2, "module-turbomoleio.core.base"]], "turbomoleio.core.control": [[2, "module-turbomoleio.core.control"]], "turbomoleio.core.datagroups": [[2, "module-turbomoleio.core.datagroups"]], "turbomoleio.core.molecule": [[2, "module-turbomoleio.core.molecule"]], "turbomoleio.core.periodic": [[2, "module-turbomoleio.core.periodic"]], "turbomoleio.core.symmetry": [[2, "module-turbomoleio.core.symmetry"]], "turbomoleio.core.utils": [[2, "module-turbomoleio.core.utils"]], "testcontrol (class in turbomoleio.core.tests.test_control)": [[3, "turbomoleio.core.tests.test_control.TestControl"]], "testdatagroupfunctions (class in turbomoleio.core.tests.test_control)": [[3, "turbomoleio.core.tests.test_control.TestDatagroupFunctions"]], "testenergy (class in turbomoleio.core.tests.test_control)": [[3, "turbomoleio.core.tests.test_control.TestEnergy"]], "testgetversion (class in turbomoleio.core.tests.test_utils)": [[3, "turbomoleio.core.tests.test_utils.TestGetVersion"]], "testgradient (class in turbomoleio.core.tests.test_control)": [[3, "turbomoleio.core.tests.test_control.TestGradient"]], "testinternaldefinition (class in turbomoleio.core.tests.test_molecule)": [[3, "turbomoleio.core.tests.test_molecule.TestInternalDefinition"]], "testmoleculesystem (class in turbomoleio.core.tests.test_molecule)": [[3, "turbomoleio.core.tests.test_molecule.TestMoleculeSystem"]], "testperiodicsystem (class in turbomoleio.core.tests.test_periodic)": [[3, "turbomoleio.core.tests.test_periodic.TestPeriodicSystem"]], "testshells (class in turbomoleio.core.tests.test_control)": [[3, "turbomoleio.core.tests.test_control.TestShells"]], "check_dg() (in module turbomoleio.core.tests.test_molecule)": [[3, "turbomoleio.core.tests.test_molecule.check_dg"]], "check_equivalent_dg() (in module turbomoleio.core.tests.test_control)": [[3, "turbomoleio.core.tests.test_control.check_equivalent_dg"]], "check_user_defined_bonds_dg() (in module turbomoleio.core.tests.test_molecule)": [[3, "turbomoleio.core.tests.test_molecule.check_user_defined_bonds_dg"]], "pytestmark (turbomoleio.core.tests.test_control.testdatagroupfunctions attribute)": [[3, "turbomoleio.core.tests.test_control.TestDatagroupFunctions.pytestmark"]], "pytestmark (turbomoleio.core.tests.test_molecule.testinternaldefinition attribute)": [[3, "turbomoleio.core.tests.test_molecule.TestInternalDefinition.pytestmark"]], "test_v72() (turbomoleio.core.tests.test_utils.testgetversion method)": [[3, "turbomoleio.core.tests.test_utils.TestGetVersion.test_V72"]], "test_v731() (turbomoleio.core.tests.test_utils.testgetversion method)": [[3, "turbomoleio.core.tests.test_utils.TestGetVersion.test_V731"]], "test_v741() (turbomoleio.core.tests.test_utils.testgetversion method)": [[3, "turbomoleio.core.tests.test_utils.TestGetVersion.test_V741"]], "test_v751() (turbomoleio.core.tests.test_utils.testgetversion method)": [[3, "turbomoleio.core.tests.test_utils.TestGetVersion.test_V751"]], "test_add_bond_angle() (turbomoleio.core.tests.test_molecule.testmoleculesystem method)": [[3, "turbomoleio.core.tests.test_molecule.TestMoleculeSystem.test_add_bond_angle"]], "test_add_cosmo() (turbomoleio.core.tests.test_control.testcontrol method)": [[3, "turbomoleio.core.tests.test_control.TestControl.test_add_cosmo"]], "test_add_dihedral() (turbomoleio.core.tests.test_molecule.testmoleculesystem method)": [[3, "turbomoleio.core.tests.test_molecule.TestMoleculeSystem.test_add_dihedral"]], "test_add_distance() (turbomoleio.core.tests.test_molecule.testmoleculesystem method)": [[3, "turbomoleio.core.tests.test_molecule.TestMoleculeSystem.test_add_distance"]], "test_adg() (turbomoleio.core.tests.test_control.testdatagroupfunctions method)": [[3, "turbomoleio.core.tests.test_control.TestDatagroupFunctions.test_adg"]], "test_bond_angle() (turbomoleio.core.tests.test_molecule.testinternaldefinition method)": [[3, "turbomoleio.core.tests.test_molecule.TestInternalDefinition.test_bond_angle"]], "test_cdg() (turbomoleio.core.tests.test_control.testdatagroupfunctions method)": [[3, "turbomoleio.core.tests.test_control.TestDatagroupFunctions.test_cdg"]], "test_check_index() (turbomoleio.core.tests.test_molecule.testmoleculesystem method)": [[3, "turbomoleio.core.tests.test_molecule.TestMoleculeSystem.test_check_index"]], "test_cleanup() (in module turbomoleio.core.tests.test_datagroups)": [[3, "turbomoleio.core.tests.test_datagroups.test_cleanup"]], "test_closed() (turbomoleio.core.tests.test_control.testshells method)": [[3, "turbomoleio.core.tests.test_control.TestShells.test_closed"]], "test_collinear_bending_angle() (turbomoleio.core.tests.test_molecule.testinternaldefinition method)": [[3, "turbomoleio.core.tests.test_molecule.TestInternalDefinition.test_collinear_bending_angle"]], "test_compare() (in module turbomoleio.core.tests.test_datagroups)": [[3, "turbomoleio.core.tests.test_datagroups.test_compare"]], "test_compare_datagroup_string() (in module turbomoleio.core.tests.test_datagroups)": [[3, "turbomoleio.core.tests.test_datagroups.test_compare_datagroup_string"]], "test_cpc() (turbomoleio.core.tests.test_control.testcontrol method)": [[3, "turbomoleio.core.tests.test_control.TestControl.test_cpc"]], "test_cpc() (turbomoleio.core.tests.test_control.testdatagroupfunctions method)": [[3, "turbomoleio.core.tests.test_control.TestDatagroupFunctions.test_cpc"]], "test_datagroups() (in module turbomoleio.core.tests.test_datagroups)": [[3, "turbomoleio.core.tests.test_datagroups.test_datagroups"]], "test_dihedral_angle() (turbomoleio.core.tests.test_molecule.testinternaldefinition method)": [[3, "turbomoleio.core.tests.test_molecule.TestInternalDefinition.test_dihedral_angle"]], "test_disordered() (turbomoleio.core.tests.test_molecule.testmoleculesystem method)": [[3, "turbomoleio.core.tests.test_molecule.TestMoleculeSystem.test_disordered"]], "test_disp() (turbomoleio.core.tests.test_control.testcontrol method)": [[3, "turbomoleio.core.tests.test_control.TestControl.test_disp"]], "test_distance() (turbomoleio.core.tests.test_molecule.testinternaldefinition method)": [[3, "turbomoleio.core.tests.test_molecule.TestInternalDefinition.test_distance"]], "test_dummy_atoms() (turbomoleio.core.tests.test_molecule.testmoleculesystem method)": [[3, "turbomoleio.core.tests.test_molecule.TestMoleculeSystem.test_dummy_atoms"]], "test_empty() (in module turbomoleio.core.tests.test_datagroups)": [[3, "turbomoleio.core.tests.test_datagroups.test_empty"]], "test_empty_gradient() (turbomoleio.core.tests.test_control.testgradient method)": [[3, "turbomoleio.core.tests.test_control.TestGradient.test_empty_gradient"]], "test_energy() (turbomoleio.core.tests.test_control.testcontrol method)": [[3, "turbomoleio.core.tests.test_control.TestControl.test_energy"]], "test_energy_mp2() (turbomoleio.core.tests.test_control.testenergy method)": [[3, "turbomoleio.core.tests.test_control.TestEnergy.test_energy_mp2"]], "test_energy_scf() (turbomoleio.core.tests.test_control.testenergy method)": [[3, "turbomoleio.core.tests.test_control.TestEnergy.test_energy_scf"]], "test_fail_parse() (turbomoleio.core.tests.test_control.testshells method)": [[3, "turbomoleio.core.tests.test_control.TestShells.test_fail_parse"]], "test_fail_parsing() (turbomoleio.core.tests.test_control.testgradient method)": [[3, "turbomoleio.core.tests.test_control.TestGradient.test_fail_parsing"]], "test_fractional() (turbomoleio.core.tests.test_control.testshells method)": [[3, "turbomoleio.core.tests.test_control.TestShells.test_fractional"]], "test_from_file() (turbomoleio.core.tests.test_control.testcontrol method)": [[3, "turbomoleio.core.tests.test_control.TestControl.test_from_file"]], "test_from_metric() (turbomoleio.core.tests.test_control.testcontrol method)": [[3, "turbomoleio.core.tests.test_control.TestControl.test_from_metric"]], "test_from_string() (turbomoleio.core.tests.test_molecule.testinternaldefinition method)": [[3, "turbomoleio.core.tests.test_molecule.TestInternalDefinition.test_from_string"]], "test_from_string() (turbomoleio.core.tests.test_molecule.testmoleculesystem method)": [[3, "turbomoleio.core.tests.test_molecule.TestMoleculeSystem.test_from_string"]], "test_get_charge() (turbomoleio.core.tests.test_control.testcontrol method)": [[3, "turbomoleio.core.tests.test_control.TestControl.test_get_charge"]], "test_get_shells() (turbomoleio.core.tests.test_control.testcontrol method)": [[3, "turbomoleio.core.tests.test_control.TestControl.test_get_shells"]], "test_get_subfiles_list() (turbomoleio.core.tests.test_control.testcontrol method)": [[3, "turbomoleio.core.tests.test_control.TestControl.test_get_subfiles_list"]], "test_gradient() (turbomoleio.core.tests.test_control.testcontrol method)": [[3, "turbomoleio.core.tests.test_control.TestControl.test_gradient"]], "test_gradient() (turbomoleio.core.tests.test_control.testgradient method)": [[3, "turbomoleio.core.tests.test_control.TestGradient.test_gradient"]], "test_inverse_distance() (turbomoleio.core.tests.test_molecule.testinternaldefinition method)": [[3, "turbomoleio.core.tests.test_molecule.TestInternalDefinition.test_inverse_distance"]], "test_is_uhf() (turbomoleio.core.tests.test_control.testcontrol method)": [[3, "turbomoleio.core.tests.test_control.TestControl.test_is_uhf"]], "test_kdg() (turbomoleio.core.tests.test_control.testdatagroupfunctions method)": [[3, "turbomoleio.core.tests.test_control.TestDatagroupFunctions.test_kdg"]], "test_mdgo() (turbomoleio.core.tests.test_control.testdatagroupfunctions method)": [[3, "turbomoleio.core.tests.test_control.TestDatagroupFunctions.test_mdgo"]], "test_modify_data_group_options() (in module turbomoleio.core.tests.test_datagroups)": [[3, "turbomoleio.core.tests.test_datagroups.test_modify_data_group_options"]], "test_out_of_plane_angle() (turbomoleio.core.tests.test_molecule.testinternaldefinition method)": [[3, "turbomoleio.core.tests.test_molecule.TestInternalDefinition.test_out_of_plane_angle"]], "test_periodic() (turbomoleio.core.tests.test_control.testgradient method)": [[3, "turbomoleio.core.tests.test_control.TestGradient.test_periodic"]], "test_periodic_2d() (turbomoleio.core.tests.test_periodic.testperiodicsystem method)": [[3, "turbomoleio.core.tests.test_periodic.TestPeriodicSystem.test_periodic_2d"]], "test_periodic_3d() (turbomoleio.core.tests.test_periodic.testperiodicsystem method)": [[3, "turbomoleio.core.tests.test_periodic.TestPeriodicSystem.test_periodic_3d"]], "test_periodic_wrong_rotation() (turbomoleio.core.tests.test_periodic.testperiodicsystem method)": [[3, "turbomoleio.core.tests.test_periodic.TestPeriodicSystem.test_periodic_wrong_rotation"]], "test_perpendicular_bending_angle() (turbomoleio.core.tests.test_molecule.testinternaldefinition method)": [[3, "turbomoleio.core.tests.test_molecule.TestInternalDefinition.test_perpendicular_bending_angle"]], "test_read_periodic_2d() (turbomoleio.core.tests.test_periodic.testperiodicsystem method)": [[3, "turbomoleio.core.tests.test_periodic.TestPeriodicSystem.test_read_periodic_2d"]], "test_remove_comments() (in module turbomoleio.core.tests.test_datagroups)": [[3, "turbomoleio.core.tests.test_datagroups.test_remove_comments"]], "test_remove_dg_from_list() (in module turbomoleio.core.tests.test_datagroups)": [[3, "turbomoleio.core.tests.test_datagroups.test_remove_dg_from_list"]], "test_remove_energy() (turbomoleio.core.tests.test_control.testcontrol method)": [[3, "turbomoleio.core.tests.test_control.TestControl.test_remove_energy"]], "test_remove_energy_in_control() (turbomoleio.core.tests.test_control.testcontrol method)": [[3, "turbomoleio.core.tests.test_control.TestControl.test_remove_energy_in_control"]], "test_remove_gradient() (turbomoleio.core.tests.test_control.testcontrol method)": [[3, "turbomoleio.core.tests.test_control.TestControl.test_remove_gradient"]], "test_remove_gradient_in_control() (turbomoleio.core.tests.test_control.testcontrol method)": [[3, "turbomoleio.core.tests.test_control.TestControl.test_remove_gradient_in_control"]], "test_sdg() (turbomoleio.core.tests.test_control.testdatagroupfunctions method)": [[3, "turbomoleio.core.tests.test_control.TestDatagroupFunctions.test_sdg"]], "test_sdg_subfiles() (in module turbomoleio.core.tests.test_datagroups)": [[3, "turbomoleio.core.tests.test_datagroups.test_sdg_subfiles"]], "test_sdgo() (turbomoleio.core.tests.test_control.testdatagroupfunctions method)": [[3, "turbomoleio.core.tests.test_control.TestDatagroupFunctions.test_sdgo"]], "test_show_data_group_option() (in module turbomoleio.core.tests.test_datagroups)": [[3, "turbomoleio.core.tests.test_datagroups.test_show_data_group_option"]], "test_show_subfile_fname() (in module turbomoleio.core.tests.test_datagroups)": [[3, "turbomoleio.core.tests.test_datagroups.test_show_subfile_fname"]], "test_split_string_to_dg_list() (in module turbomoleio.core.tests.test_datagroups)": [[3, "turbomoleio.core.tests.test_datagroups.test_split_string_to_dg_list"]], "test_to_coord_string() (turbomoleio.core.tests.test_molecule.testmoleculesystem method)": [[3, "turbomoleio.core.tests.test_molecule.TestMoleculeSystem.test_to_coord_string"]], "test_to_file() (turbomoleio.core.tests.test_molecule.testmoleculesystem method)": [[3, "turbomoleio.core.tests.test_molecule.TestMoleculeSystem.test_to_file"]], "test_uhf() (turbomoleio.core.tests.test_control.testshells method)": [[3, "turbomoleio.core.tests.test_control.TestShells.test_uhf"]], "turbomoleio.core.tests": [[3, "module-turbomoleio.core.tests"]], "turbomoleio.core.tests.test_control": [[3, "module-turbomoleio.core.tests.test_control"]], "turbomoleio.core.tests.test_datagroups": [[3, "module-turbomoleio.core.tests.test_datagroups"]], "turbomoleio.core.tests.test_molecule": [[3, "module-turbomoleio.core.tests.test_molecule"]], "turbomoleio.core.tests.test_periodic": [[3, "module-turbomoleio.core.tests.test_periodic"]], "turbomoleio.core.tests.test_utils": [[3, "module-turbomoleio.core.tests.test_utils"]], "defineerror": [[4, "turbomoleio.input.define.DefineError"]], "defineexpecterror": [[4, "turbomoleio.input.define.DefineExpectError"]], "defineirederror": [[4, "turbomoleio.input.define.DefineIredError"]], "defineparametererror": [[4, "turbomoleio.input.define.DefineParameterError"]], "definerunner (class in turbomoleio.input.define)": [[4, "turbomoleio.input.define.DefineRunner"]], "parametersvalidationerror": [[4, "turbomoleio.input.utils.ParametersValidationError"]], "unsupporteddefinestateerror": [[4, "turbomoleio.input.define.UnsupportedDefineStateError"]], "dump_command_file() (turbomoleio.input.define.definerunner method)": [[4, "turbomoleio.input.define.DefineRunner.dump_command_file"]], "ex_setter() (in module turbomoleio.input.utils)": [[4, "turbomoleio.input.utils.ex_setter"]], "get_define_template() (in module turbomoleio.input.utils)": [[4, "turbomoleio.input.utils.get_define_template"]], "run_full() (turbomoleio.input.define.definerunner method)": [[4, "turbomoleio.input.define.DefineRunner.run_full"]], "run_generate_mo_files() (turbomoleio.input.define.definerunner method)": [[4, "turbomoleio.input.define.DefineRunner.run_generate_mo_files"]], "run_update_internal_coords() (turbomoleio.input.define.definerunner method)": [[4, "turbomoleio.input.define.DefineRunner.run_update_internal_coords"]], "schema_define_params (in module turbomoleio.input.utils)": [[4, "turbomoleio.input.utils.schema_define_params"]], "turbomoleio.input": [[4, "module-turbomoleio.input"]], "turbomoleio.input.define": [[4, "module-turbomoleio.input.define"]], "turbomoleio.input.utils": [[4, "module-turbomoleio.input.utils"]], "validate_parameters() (in module turbomoleio.input.utils)": [[4, "turbomoleio.input.utils.validate_parameters"]], "turbomoleio.input.templates": [[5, "module-turbomoleio.input.templates"]], "testdefinerunner (class in turbomoleio.input.tests.test_define)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner"]], "testexceptions (class in turbomoleio.input.tests.test_define)": [[6, "turbomoleio.input.tests.test_define.TestExceptions"]], "assert_sendline_calls() (turbomoleio.input.tests.test_define.testdefinerunner static method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.assert_sendline_calls"]], "assert_sendline_has_calls() (turbomoleio.input.tests.test_define.testdefinerunner static method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.assert_sendline_has_calls"]], "dr_data() (in module turbomoleio.input.tests.test_define)": [[6, "turbomoleio.input.tests.test_define.dr_data"]], "test_add_atomic_coordinates_from_file() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_add_atomic_coordinates_from_file"]], "test_add_atomic_coordinates_from_file_cartesian() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_add_atomic_coordinates_from_file_cartesian"]], "test_add_cosmo() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_add_cosmo"]], "test_close() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_close"]], "test_copy_mo_files_ab_mos() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_copy_mo_files_ab_mos"]], "test_copy_mo_files_alpha_beta() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_copy_mo_files_alpha_beta"]], "test_copy_mo_files_error() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_copy_mo_files_error"]], "test_copy_mo_files_mo() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_copy_mo_files_mo"]], "test_create() (turbomoleio.input.tests.test_define.testexceptions method)": [[6, "turbomoleio.input.tests.test_define.TestExceptions.test_create"]], "test_define_basis_sets() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_define_basis_sets"]], "test_define_core_potentials() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_define_core_potentials"]], "test_define_symmetry() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_define_symmetry"]], "test_define_symmetry_error() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_define_symmetry_error"]], "test_determine_symmetry() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_determine_symmetry"]], "test_determine_symmetry_eps() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_determine_symmetry_eps"]], "test_dump_command_file() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_dump_command_file"]], "test_excited_state_menu_error_not_activated() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_excited_state_menu_error_not_activated"]], "test_excited_state_menu_frequency() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_excited_state_menu_frequency"]], "test_excited_state_menu_irrep() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_excited_state_menu_irrep"]], "test_excited_state_menu_irrep_wrong_sym() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_excited_state_menu_irrep_wrong_sym"]], "test_excited_state_menu_polly() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_excited_state_menu_polly"]], "test_excited_state_menu_rpas() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_excited_state_menu_rpas"]], "test_excited_state_menu_urpa() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_excited_state_menu_urpa"]], "test_excited_state_menu_urpa_error() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_excited_state_menu_urpa_error"]], "test_excited_state_menu_wrong_ex_method() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_excited_state_menu_wrong_ex_method"]], "test_excited_state_menu_wrong_menu() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_excited_state_menu_wrong_menu"]], "test_existing_coordinates() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_existing_coordinates"]], "test_existing_coordinates_cartesian() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_existing_coordinates_cartesian"]], "test_existing_coordinates_error() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_existing_coordinates_error"]], "test_existing_coordinates_no_update() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_existing_coordinates_no_update"]], "test_existing_coordinates_unsupported() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_existing_coordinates_unsupported"]], "test_expect() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_expect"]], "test_expect_raise_eof() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_expect_raise_eof"]], "test_expect_raise_timeout() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_expect_raise_timeout"]], "test_extended_hueckel_theory_menu_charge() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_extended_hueckel_theory_menu_charge"]], "test_extended_hueckel_theory_menu_default() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_extended_hueckel_theory_menu_default"]], "test_extended_hueckel_theory_menu_error() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_extended_hueckel_theory_menu_error"]], "test_extended_hueckel_theory_menu_nocharge() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_extended_hueckel_theory_menu_nocharge"]], "test_extended_hueckel_theory_menu_unpaired() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_extended_hueckel_theory_menu_unpaired"]], "test_general_menu_ccsdt() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_general_menu_ccsdt"]], "test_general_menu_dft() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_general_menu_dft"]], "test_general_menu_hf() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_general_menu_hf"]], "test_general_menu_wrong_method() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_general_menu_wrong_method"]], "test_generate_internal_coordinates() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_generate_internal_coordinates"]], "test_generate_internal_coordinates_error() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_generate_internal_coordinates_error"]], "test_geometry_menu_copymo() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_geometry_menu_copymo"]], "test_geometry_menu_incompatibility_1() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_geometry_menu_incompatibility_1"]], "test_geometry_menu_incompatibility_2() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_geometry_menu_incompatibility_2"]], "test_geometry_menu_new_coords_1() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_geometry_menu_new_coords_1"]], "test_geometry_menu_new_coords_2() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_geometry_menu_new_coords_2"]], "test_geometry_menu_new_coords_3() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_geometry_menu_new_coords_3"]], "test_geometry_menu_new_coords_4() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_geometry_menu_new_coords_4"]], "test_geometry_menu_no_new_coords() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_geometry_menu_no_new_coords"]], "test_get_bin_path() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_get_bin_path"]], "test_get_define_template() (in module turbomoleio.input.tests.test_utils)": [[6, "turbomoleio.input.tests.test_utils.test_get_define_template"]], "test_go_to_general_menu() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_go_to_general_menu"]], "test_init() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_init"]], "test_initialize_control_1() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_initialize_control_1"]], "test_initialize_control_2() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_initialize_control_2"]], "test_initialize_control_incompatibility() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_initialize_control_incompatibility"]], "test_is_alive() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_is_alive"]], "test_postprocess() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_postprocess"]], "test_quit_general_menu() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_quit_general_menu"]], "test_run_full_1() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_run_full_1"]], "test_run_full_2() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_run_full_2"]], "test_run_generate_mo_files() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_run_generate_mo_files"]], "test_run_generate_mo_files_sym() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_run_generate_mo_files_sym"]], "test_run_update_internal_coords() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_run_update_internal_coords"]], "test_run_update_internal_coords_error() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_run_update_internal_coords_error"]], "test_sendline() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_sendline"]], "test_set_basis() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_set_basis"]], "test_set_basis_error() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_set_basis_error"]], "test_set_basis_error_2() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_set_basis_error_2"]], "test_set_basis_error_3() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_set_basis_error_3"]], "test_set_dft_options_no_dft() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_set_dft_options_no_dft"]], "test_set_dft_options_use_dft() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_set_dft_options_use_dft"]], "test_set_dft_options_wrong_xc() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_set_dft_options_wrong_xc"]], "test_set_ecp_error() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_set_ecp_error"]], "test_set_ecp_error_2() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_set_ecp_error_2"]], "test_set_ecp_error_3() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_set_ecp_error_3"]], "test_set_metric() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_set_metric"]], "test_set_mo_from_control_file() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_set_mo_from_control_file"]], "test_set_mo_from_control_file_2() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_set_mo_from_control_file_2"]], "test_set_mo_from_control_file_error() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_set_mo_from_control_file_error"]], "test_set_mo_from_control_file_longpath() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_set_mo_from_control_file_longpath"]], "test_set_mp2_options() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_set_mp2_options"]], "test_set_mp2_options_f12() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_set_mp2_options_f12"]], "test_set_mp2_options_geoopt() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_set_mp2_options_geoopt"]], "test_set_mp2_options_mp2() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_set_mp2_options_mp2"]], "test_set_mp2_options_mp2_error() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_set_mp2_options_mp2_error"]], "test_set_ri_state() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_set_ri_state"]], "test_set_ri_state_marij() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_set_ri_state_marij"]], "test_set_scf_options() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_set_scf_options"]], "test_skip_atomic_attribute_menu() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_skip_atomic_attribute_menu"]], "test_skip_atomic_attribute_menu_error() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_skip_atomic_attribute_menu_error"]], "test_skip_atomic_attribute_menu_internal() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_skip_atomic_attribute_menu_internal"]], "test_switch_to_atomic_attribute_menu() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_switch_to_atomic_attribute_menu"]], "test_switch_to_atomic_attribute_menu_internal() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_switch_to_atomic_attribute_menu_internal"]], "test_switch_to_atomic_attribute_menu_internal_error() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_switch_to_atomic_attribute_menu_internal_error"]], "test_switch_to_molecular_orbital_definition_menu() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_switch_to_molecular_orbital_definition_menu"]], "test_switch_to_scf_menu() (turbomoleio.input.tests.test_define.testdefinerunner method)": [[6, "turbomoleio.input.tests.test_define.TestDefineRunner.test_switch_to_scf_menu"]], "test_validate_parameters() (in module turbomoleio.input.tests.test_utils)": [[6, "turbomoleio.input.tests.test_utils.test_validate_parameters"]], "turbomoleio.input.tests": [[6, "module-turbomoleio.input.tests"]], "turbomoleio.input.tests.test_define": [[6, "module-turbomoleio.input.tests.test_define"]], "turbomoleio.input.tests.test_utils": [[6, "module-turbomoleio.input.tests.test_utils"]], "aoforcenumericalintegrationdata (class in turbomoleio.output.data)": [[7, "turbomoleio.output.data.AoforceNumericalIntegrationData"]], "aoforceoutput (class in turbomoleio.output.files)": [[7, "turbomoleio.output.files.AoforceOutput"]], "aoforcerotationaldata (class in turbomoleio.output.data)": [[7, "turbomoleio.output.data.AoforceRotationalData"]], "aoforcevibrationaldata (class in turbomoleio.output.data)": [[7, "turbomoleio.output.data.AoforceVibrationalData"]], "basedata (class in turbomoleio.output.data)": [[7, "turbomoleio.output.data.BaseData"]], "basisdata (class in turbomoleio.output.data)": [[7, "turbomoleio.output.data.BasisData"]], "cosmodata (class in turbomoleio.output.data)": [[7, "turbomoleio.output.data.CosmoData"]], "dftdata (class in turbomoleio.output.data)": [[7, "turbomoleio.output.data.DFTData"]], "dispersioncorrectiondata (class in turbomoleio.output.data)": [[7, "turbomoleio.output.data.DispersionCorrectionData"]], "egradoutput (class in turbomoleio.output.files)": [[7, "turbomoleio.output.files.EgradOutput"]], "eigeroutput (class in turbomoleio.output.states)": [[7, "turbomoleio.output.states.EigerOutput"]], "eigerrunner (class in turbomoleio.output.states)": [[7, "turbomoleio.output.states.EigerRunner"]], "electrostaticmomentsdata (class in turbomoleio.output.data)": [[7, "turbomoleio.output.data.ElectrostaticMomentsData"]], "escfdata (class in turbomoleio.output.data)": [[7, "turbomoleio.output.data.EscfData"]], "escfiterationdata (class in turbomoleio.output.data)": [[7, "turbomoleio.output.data.EscfIterationData"]], "escfonlyoutput (class in turbomoleio.output.files)": [[7, "turbomoleio.output.files.EscfOnlyOutput"]], "escfoutput (class in turbomoleio.output.files)": [[7, "turbomoleio.output.files.EscfOutput"]], "functionaldata (class in turbomoleio.output.data)": [[7, "turbomoleio.output.data.FunctionalData"]], "geometrydata (class in turbomoleio.output.data)": [[7, "turbomoleio.output.data.GeometryData"]], "gradoutput (class in turbomoleio.output.files)": [[7, "turbomoleio.output.files.GradOutput"]], "integraldata (class in turbomoleio.output.data)": [[7, "turbomoleio.output.data.IntegralData"]], "jobexoutput (class in turbomoleio.output.files)": [[7, "turbomoleio.output.files.JobexOutput"]], "mp2data (class in turbomoleio.output.data)": [[7, "turbomoleio.output.data.MP2Data"]], "mp2output (class in turbomoleio.output.files)": [[7, "turbomoleio.output.files.MP2Output"]], "mp2results (class in turbomoleio.output.data)": [[7, "turbomoleio.output.data.MP2Results"]], "parser (class in turbomoleio.output.parser)": [[7, "turbomoleio.output.parser.Parser"]], "periodicitydata (class in turbomoleio.output.data)": [[7, "turbomoleio.output.data.PeriodicityData"]], "relaxconvergencedata (class in turbomoleio.output.data)": [[7, "turbomoleio.output.data.RelaxConvergenceData"]], "relaxdata (class in turbomoleio.output.data)": [[7, "turbomoleio.output.data.RelaxData"]], "relaxgradientsdata (class in turbomoleio.output.data)": [[7, "turbomoleio.output.data.RelaxGradientsData"]], "relaxoutput (class in turbomoleio.output.files)": [[7, "turbomoleio.output.files.RelaxOutput"]], "ridata (class in turbomoleio.output.data)": [[7, "turbomoleio.output.data.RiData"]], "ricc2output (class in turbomoleio.output.files)": [[7, "turbomoleio.output.files.Ricc2Output"]], "rundata (class in turbomoleio.output.data)": [[7, "turbomoleio.output.data.RunData"]], "scfdata (class in turbomoleio.output.data)": [[7, "turbomoleio.output.data.ScfData"]], "scfenergiesdata (class in turbomoleio.output.data)": [[7, "turbomoleio.output.data.ScfEnergiesData"]], "scfiterationdata (class in turbomoleio.output.data)": [[7, "turbomoleio.output.data.ScfIterationData"]], "scfoutput (class in turbomoleio.output.files)": [[7, "turbomoleio.output.files.ScfOutput"]], "singleexcitation (class in turbomoleio.output.data)": [[7, "turbomoleio.output.data.SingleExcitation"]], "smearingdata (class in turbomoleio.output.data)": [[7, "turbomoleio.output.data.SmearingData"]], "spindata (class in turbomoleio.output.data)": [[7, "turbomoleio.output.data.SpinData"]], "state (class in turbomoleio.output.states)": [[7, "turbomoleio.output.states.State"]], "states (class in turbomoleio.output.states)": [[7, "turbomoleio.output.states.States"]], "statptdata (class in turbomoleio.output.data)": [[7, "turbomoleio.output.data.StatptData"]], "statptoutput (class in turbomoleio.output.files)": [[7, "turbomoleio.output.files.StatptOutput"]], "symmetrydata (class in turbomoleio.output.data)": [[7, "turbomoleio.output.data.SymmetryData"]], "turbomoledata (class in turbomoleio.output.data)": [[7, "turbomoleio.output.data.TurbomoleData"]], "all_done() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.all_done"]], "aoforce_analysis() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.aoforce_analysis"]], "aoforce_numerical_integration() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.aoforce_numerical_integration"]], "as_dict() (turbomoleio.output.states.state method)": [[7, "turbomoleio.output.states.State.as_dict"]], "as_dict() (turbomoleio.output.states.states method)": [[7, "turbomoleio.output.states.States.as_dict"]], "basis() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.basis"]], "centers() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.centers"]], "compare_states() (turbomoleio.output.states.eigeroutput method)": [[7, "turbomoleio.output.states.EigerOutput.compare_states"]], "convert_float() (in module turbomoleio.output.parser)": [[7, "turbomoleio.output.parser.convert_float"]], "convert_int() (in module turbomoleio.output.parser)": [[7, "turbomoleio.output.parser.convert_int"]], "convert_time_string() (in module turbomoleio.output.parser)": [[7, "turbomoleio.output.parser.convert_time_string"]], "coordinates() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.coordinates"]], "cosmo_header() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.cosmo_header"]], "cosmo_results() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.cosmo_results"]], "density_functional_data() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.density_functional_data"]], "dftd() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.dftd"]], "egrad_excited_state() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.egrad_excited_state"]], "eigenvalues (turbomoleio.output.states.states property)": [[7, "turbomoleio.output.states.States.eigenvalues"]], "electrostatic_moments() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.electrostatic_moments"]], "escf_excitations() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.escf_excitations"]], "escf_gs_total_en() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.escf_gs_total_en"]], "escf_iterations() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.escf_iterations"]], "fermi() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.fermi"]], "filter_states() (turbomoleio.output.states.states method)": [[7, "turbomoleio.output.states.States.filter_states"]], "from_dict() (turbomoleio.output.states.state class method)": [[7, "turbomoleio.output.states.State.from_dict"]], "from_file() (turbomoleio.output.data.basedata class method)": [[7, "turbomoleio.output.data.BaseData.from_file"]], "from_file() (turbomoleio.output.parser.parser class method)": [[7, "turbomoleio.output.parser.Parser.from_file"]], "from_file() (turbomoleio.output.states.eigeroutput class method)": [[7, "turbomoleio.output.states.EigerOutput.from_file"]], "from_file() (turbomoleio.output.states.states class method)": [[7, "turbomoleio.output.states.States.from_file"]], "from_parser() (turbomoleio.output.data.aoforcenumericalintegrationdata class method)": [[7, "turbomoleio.output.data.AoforceNumericalIntegrationData.from_parser"]], "from_parser() (turbomoleio.output.data.aoforcerotationaldata class method)": [[7, "turbomoleio.output.data.AoforceRotationalData.from_parser"]], "from_parser() (turbomoleio.output.data.aoforcevibrationaldata class method)": [[7, "turbomoleio.output.data.AoforceVibrationalData.from_parser"]], "from_parser() (turbomoleio.output.data.basedata class method)": [[7, "turbomoleio.output.data.BaseData.from_parser"]], "from_parser() (turbomoleio.output.data.basisdata class method)": [[7, "turbomoleio.output.data.BasisData.from_parser"]], "from_parser() (turbomoleio.output.data.cosmodata class method)": [[7, "turbomoleio.output.data.CosmoData.from_parser"]], "from_parser() (turbomoleio.output.data.dftdata class method)": [[7, "turbomoleio.output.data.DFTData.from_parser"]], "from_parser() (turbomoleio.output.data.dispersioncorrectiondata class method)": [[7, "turbomoleio.output.data.DispersionCorrectionData.from_parser"]], "from_parser() (turbomoleio.output.data.electrostaticmomentsdata class method)": [[7, "turbomoleio.output.data.ElectrostaticMomentsData.from_parser"]], "from_parser() (turbomoleio.output.data.escfdata class method)": [[7, "turbomoleio.output.data.EscfData.from_parser"]], "from_parser() (turbomoleio.output.data.escfiterationdata class method)": [[7, "turbomoleio.output.data.EscfIterationData.from_parser"]], "from_parser() (turbomoleio.output.data.functionaldata class method)": [[7, "turbomoleio.output.data.FunctionalData.from_parser"]], "from_parser() (turbomoleio.output.data.geometrydata class method)": [[7, "turbomoleio.output.data.GeometryData.from_parser"]], "from_parser() (turbomoleio.output.data.integraldata class method)": [[7, "turbomoleio.output.data.IntegralData.from_parser"]], "from_parser() (turbomoleio.output.data.mp2data class method)": [[7, "turbomoleio.output.data.MP2Data.from_parser"]], "from_parser() (turbomoleio.output.data.mp2results class method)": [[7, "turbomoleio.output.data.MP2Results.from_parser"]], "from_parser() (turbomoleio.output.data.periodicitydata class method)": [[7, "turbomoleio.output.data.PeriodicityData.from_parser"]], "from_parser() (turbomoleio.output.data.relaxconvergencedata class method)": [[7, "turbomoleio.output.data.RelaxConvergenceData.from_parser"]], "from_parser() (turbomoleio.output.data.relaxdata class method)": [[7, "turbomoleio.output.data.RelaxData.from_parser"]], "from_parser() (turbomoleio.output.data.relaxgradientsdata class method)": [[7, "turbomoleio.output.data.RelaxGradientsData.from_parser"]], "from_parser() (turbomoleio.output.data.ridata class method)": [[7, "turbomoleio.output.data.RiData.from_parser"]], "from_parser() (turbomoleio.output.data.rundata class method)": [[7, "turbomoleio.output.data.RunData.from_parser"]], "from_parser() (turbomoleio.output.data.scfdata class method)": [[7, "turbomoleio.output.data.ScfData.from_parser"]], "from_parser() (turbomoleio.output.data.scfenergiesdata class method)": [[7, "turbomoleio.output.data.ScfEnergiesData.from_parser"]], "from_parser() (turbomoleio.output.data.scfiterationdata class method)": [[7, "turbomoleio.output.data.ScfIterationData.from_parser"]], "from_parser() (turbomoleio.output.data.smearingdata class method)": [[7, "turbomoleio.output.data.SmearingData.from_parser"]], "from_parser() (turbomoleio.output.data.spindata class method)": [[7, "turbomoleio.output.data.SpinData.from_parser"]], "from_parser() (turbomoleio.output.data.statptdata class method)": [[7, "turbomoleio.output.data.StatptData.from_parser"]], "from_parser() (turbomoleio.output.data.symmetrydata class method)": [[7, "turbomoleio.output.data.SymmetryData.from_parser"]], "from_parser() (turbomoleio.output.data.turbomoledata class method)": [[7, "turbomoleio.output.data.TurbomoleData.from_parser"]], "from_parser() (turbomoleio.output.files.aoforceoutput class method)": [[7, "turbomoleio.output.files.AoforceOutput.from_parser"]], "from_parser() (turbomoleio.output.files.egradoutput class method)": [[7, "turbomoleio.output.files.EgradOutput.from_parser"]], "from_parser() (turbomoleio.output.files.escfonlyoutput class method)": [[7, "turbomoleio.output.files.EscfOnlyOutput.from_parser"]], "from_parser() (turbomoleio.output.files.escfoutput class method)": [[7, "turbomoleio.output.files.EscfOutput.from_parser"]], "from_parser() (turbomoleio.output.files.gradoutput class method)": [[7, "turbomoleio.output.files.GradOutput.from_parser"]], "from_parser() (turbomoleio.output.files.jobexoutput class method)": [[7, "turbomoleio.output.files.JobexOutput.from_parser"]], "from_parser() (turbomoleio.output.files.mp2output class method)": [[7, "turbomoleio.output.files.MP2Output.from_parser"]], "from_parser() (turbomoleio.output.files.relaxoutput class method)": [[7, "turbomoleio.output.files.RelaxOutput.from_parser"]], "from_parser() (turbomoleio.output.files.ricc2output class method)": [[7, "turbomoleio.output.files.Ricc2Output.from_parser"]], "from_parser() (turbomoleio.output.files.scfoutput class method)": [[7, "turbomoleio.output.files.ScfOutput.from_parser"]], "from_parser() (turbomoleio.output.files.statptoutput class method)": [[7, "turbomoleio.output.files.StatptOutput.from_parser"]], "from_string() (turbomoleio.output.data.basedata class method)": [[7, "turbomoleio.output.data.BaseData.from_string"]], "from_string() (turbomoleio.output.states.eigeroutput class method)": [[7, "turbomoleio.output.states.EigerOutput.from_string"]], "gap (turbomoleio.output.states.states property)": [[7, "turbomoleio.output.states.States.gap"]], "generate_lowest_filled_states() (turbomoleio.output.states.states method)": [[7, "turbomoleio.output.states.States.generate_lowest_filled_states"]], "get_eiger_output() (turbomoleio.output.states.eigerrunner method)": [[7, "turbomoleio.output.states.EigerRunner.get_eiger_output"]], "get_freqs_df() (turbomoleio.output.data.aoforcevibrationaldata method)": [[7, "turbomoleio.output.data.AoforceVibrationalData.get_freqs_df"]], "get_mos_energies() (in module turbomoleio.output.states)": [[7, "turbomoleio.output.states.get_mos_energies"]], "get_shells() (turbomoleio.output.states.states method)": [[7, "turbomoleio.output.states.States.get_shells"]], "get_split_jobex_parsers() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.get_split_jobex_parsers"]], "get_value() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.get_value"]], "gradient() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.gradient"]], "grep_line() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.grep_line"]], "has_fractional_occ (turbomoleio.output.states.state property)": [[7, "turbomoleio.output.states.State.has_fractional_occ"]], "has_fractional_occ (turbomoleio.output.states.states property)": [[7, "turbomoleio.output.states.States.has_fractional_occ"]], "has_hole (turbomoleio.output.states.states property)": [[7, "turbomoleio.output.states.States.has_hole"]], "header() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.header"]], "homo (turbomoleio.output.states.states property)": [[7, "turbomoleio.output.states.States.homo"]], "homo_index (turbomoleio.output.states.states property)": [[7, "turbomoleio.output.states.States.homo_index"]], "insert() (turbomoleio.output.states.states method)": [[7, "turbomoleio.output.states.States.insert"]], "integral() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.integral"]], "irrep_indices (turbomoleio.output.states.states property)": [[7, "turbomoleio.output.states.States.irrep_indices"]], "irreps (turbomoleio.output.states.states property)": [[7, "turbomoleio.output.states.States.irreps"]], "is_uhf (turbomoleio.output.states.states property)": [[7, "turbomoleio.output.states.States.is_uhf"]], "is_uhf() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.is_uhf"]], "lumo (turbomoleio.output.states.states property)": [[7, "turbomoleio.output.states.States.lumo"]], "lumo_index (turbomoleio.output.states.states property)": [[7, "turbomoleio.output.states.States.lumo_index"]], "max_occupation (turbomoleio.output.states.state property)": [[7, "turbomoleio.output.states.State.max_occupation"]], "mp2_data() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.mp2_data"]], "mp2_results() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.mp2_results"]], "n_negative_freqs() (turbomoleio.output.data.aoforcevibrationaldata method)": [[7, "turbomoleio.output.data.AoforceVibrationalData.n_negative_freqs"]], "n_positive_freqs() (turbomoleio.output.data.aoforcevibrationaldata method)": [[7, "turbomoleio.output.data.AoforceVibrationalData.n_positive_freqs"]], "n_states (turbomoleio.output.states.states property)": [[7, "turbomoleio.output.states.States.n_states"]], "n_zero_freqs() (turbomoleio.output.data.aoforcevibrationaldata method)": [[7, "turbomoleio.output.data.AoforceVibrationalData.n_zero_freqs"]], "occupations (turbomoleio.output.states.states property)": [[7, "turbomoleio.output.states.States.occupations"]], "periodicity_data() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.periodicity_data"]], "plot_energies() (turbomoleio.output.data.scfiterationdata method)": [[7, "turbomoleio.output.data.ScfIterationData.plot_energies"]], "pre_escf_run() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.pre_escf_run"]], "pre_scf_run() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.pre_scf_run"]], "rdgrad_memory() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.rdgrad_memory"]], "relax_conv_info() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.relax_conv_info"]], "relax_gradient_values() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.relax_gradient_values"]], "relax_info() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.relax_info"]], "rij_info() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.rij_info"]], "riper_scf_energies() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.riper_scf_energies"]], "run() (turbomoleio.output.states.eigerrunner method)": [[7, "turbomoleio.output.states.EigerRunner.run"]], "s2() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.s2"]], "scf_energies() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.scf_energies"]], "scf_iterations() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.scf_iterations"]], "spins (turbomoleio.output.states.states property)": [[7, "turbomoleio.output.states.States.spins"]], "statpt_info() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.statpt_info"]], "string (turbomoleio.output.parser.parser property)": [[7, "turbomoleio.output.parser.Parser.string"]], "symmetry() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.symmetry"]], "timings() (turbomoleio.output.parser.parser method)": [[7, "turbomoleio.output.parser.Parser.timings"]], "to_file() (turbomoleio.output.states.eigerrunner method)": [[7, "turbomoleio.output.states.EigerRunner.to_file"]], "total_electrons (turbomoleio.output.states.states property)": [[7, "turbomoleio.output.states.States.total_electrons"]], "turbomoleio.output": [[7, "module-turbomoleio.output"]], "turbomoleio.output.data": [[7, "module-turbomoleio.output.data"]], "turbomoleio.output.files": [[7, "module-turbomoleio.output.files"]], "turbomoleio.output.parser": [[7, "module-turbomoleio.output.parser"]], "turbomoleio.output.states": [[7, "module-turbomoleio.output.states"]], "testfiles (class in turbomoleio.output.tests.test_files)": [[8, "turbomoleio.output.tests.test_files.TestFiles"]], "testfunctions (class in turbomoleio.output.tests.test_parser)": [[8, "turbomoleio.output.tests.test_parser.TestFunctions"]], "testparser (class in turbomoleio.output.tests.test_parser)": [[8, "turbomoleio.output.tests.test_parser.TestParser"]], "cls_dict_path() (in module turbomoleio.output.tests.test_files)": [[8, "turbomoleio.output.tests.test_files.cls_dict_path"]], "generate_files() (in module turbomoleio.output.tests.test_files)": [[8, "turbomoleio.output.tests.test_files.generate_files"]], "generate_files() (in module turbomoleio.output.tests.test_parser)": [[8, "turbomoleio.output.tests.test_parser.generate_files"]], "method() (in module turbomoleio.output.tests.test_parser)": [[8, "turbomoleio.output.tests.test_parser.method"]], "parser_and_dict() (in module turbomoleio.output.tests.test_parser)": [[8, "turbomoleio.output.tests.test_parser.parser_and_dict"]], "test_aoforcevibrationaldata() (in module turbomoleio.output.tests.test_data)": [[8, "turbomoleio.output.tests.test_data.test_AoforceVibrationalData"]], "test_scfiterationdata() (in module turbomoleio.output.tests.test_data)": [[8, "turbomoleio.output.tests.test_data.test_ScfIterationData"]], "test_closed() (in module turbomoleio.output.tests.test_states)": [[8, "turbomoleio.output.tests.test_states.test_closed"]], "test_convert_float() (turbomoleio.output.tests.test_parser.testfunctions method)": [[8, "turbomoleio.output.tests.test_parser.TestFunctions.test_convert_float"]], "test_convert_int() (turbomoleio.output.tests.test_parser.testfunctions method)": [[8, "turbomoleio.output.tests.test_parser.TestFunctions.test_convert_int"]], "test_convert_time_string() (turbomoleio.output.tests.test_parser.testfunctions method)": [[8, "turbomoleio.output.tests.test_parser.TestFunctions.test_convert_time_string"]], "test_eiger_runner() (in module turbomoleio.output.tests.test_states)": [[8, "turbomoleio.output.tests.test_states.test_eiger_runner"]], "test_error_homo() (in module turbomoleio.output.tests.test_states)": [[8, "turbomoleio.output.tests.test_states.test_error_homo"]], "test_fail_all_done_check() (turbomoleio.output.tests.test_parser.testparser method)": [[8, "turbomoleio.output.tests.test_parser.TestParser.test_fail_all_done_check"]], "test_get_split_jobex_parsers() (turbomoleio.output.tests.test_parser.testparser method)": [[8, "turbomoleio.output.tests.test_parser.TestParser.test_get_split_jobex_parsers"]], "test_get_value() (turbomoleio.output.tests.test_parser.testparser method)": [[8, "turbomoleio.output.tests.test_parser.TestParser.test_get_value"]], "test_grep_line() (turbomoleio.output.tests.test_parser.testparser method)": [[8, "turbomoleio.output.tests.test_parser.TestParser.test_grep_line"]], "test_hole() (in module turbomoleio.output.tests.test_states)": [[8, "turbomoleio.output.tests.test_states.test_hole"]], "test_no_empty_states() (in module turbomoleio.output.tests.test_states)": [[8, "turbomoleio.output.tests.test_states.test_no_empty_states"]], "test_parsing_failures() (in module turbomoleio.output.tests.test_states)": [[8, "turbomoleio.output.tests.test_states.test_parsing_failures"]], "test_properties() (turbomoleio.output.tests.test_files.testfiles method)": [[8, "turbomoleio.output.tests.test_files.TestFiles.test_properties"]], "test_properties() (turbomoleio.output.tests.test_parser.testparser method)": [[8, "turbomoleio.output.tests.test_parser.TestParser.test_properties"]], "test_state() (in module turbomoleio.output.tests.test_states)": [[8, "turbomoleio.output.tests.test_states.test_state"]], "test_str() (in module turbomoleio.output.tests.test_data)": [[8, "turbomoleio.output.tests.test_data.test_str"]], "test_uhf() (in module turbomoleio.output.tests.test_states)": [[8, "turbomoleio.output.tests.test_states.test_uhf"]], "turbomoleio.output.tests": [[8, "module-turbomoleio.output.tests"]], "turbomoleio.output.tests.test_data": [[8, "module-turbomoleio.output.tests.test_data"]], "turbomoleio.output.tests.test_files": [[8, "module-turbomoleio.output.tests.test_files"]], "turbomoleio.output.tests.test_parser": [[8, "module-turbomoleio.output.tests.test_parser"]], "turbomoleio.output.tests.test_states": [[8, "module-turbomoleio.output.tests.test_states"]], "itestconfig (class in turbomoleio.testfiles.utils)": [[9, "turbomoleio.testfiles.utils.ItestConfig"]], "itesterror": [[9, "turbomoleio.testfiles.utils.ItestError"]], "assert_msonable() (in module turbomoleio.testfiles.utils)": [[9, "turbomoleio.testfiles.utils.assert_MSONable"]], "assert_almost_equal() (in module turbomoleio.testfiles.utils)": [[9, "turbomoleio.testfiles.utils.assert_almost_equal"]], "compare_differences() (in module turbomoleio.testfiles.utils)": [[9, "turbomoleio.testfiles.utils.compare_differences"]], "define_timeout (turbomoleio.testfiles.utils.itestconfig attribute)": [[9, "turbomoleio.testfiles.utils.ItestConfig.define_timeout"]], "delete_tmp_dir (turbomoleio.testfiles.utils.itestconfig attribute)": [[9, "turbomoleio.testfiles.utils.ItestConfig.delete_tmp_dir"]], "dryrun (turbomoleio.testfiles.utils.itestconfig attribute)": [[9, "turbomoleio.testfiles.utils.ItestConfig.dryrun"]], "dryrun_fpath (turbomoleio.testfiles.utils.itestconfig attribute)": [[9, "turbomoleio.testfiles.utils.ItestConfig.dryrun_fpath"]], "dryrun_use_ref_control (turbomoleio.testfiles.utils.itestconfig attribute)": [[9, "turbomoleio.testfiles.utils.ItestConfig.dryrun_use_ref_control"]], "generate_control_for_test() (in module turbomoleio.testfiles.utils)": [[9, "turbomoleio.testfiles.utils.generate_control_for_test"]], "generate_ref (turbomoleio.testfiles.utils.itestconfig attribute)": [[9, "turbomoleio.testfiles.utils.ItestConfig.generate_ref"]], "generate_reference_out_parser_files() (in module turbomoleio.testfiles.utils)": [[9, "turbomoleio.testfiles.utils.generate_reference_out_parser_files"]], "generate_reference_output() (in module turbomoleio.testfiles.utils)": [[9, "turbomoleio.testfiles.utils.generate_reference_output"]], "get_control_filepath() (in module turbomoleio.testfiles.utils)": [[9, "turbomoleio.testfiles.utils.get_control_filepath"]], "get_control_integration() (in module turbomoleio.testfiles.utils)": [[9, "turbomoleio.testfiles.utils.get_control_integration"]], "get_sp() (in module turbomoleio.testfiles.utils)": [[9, "turbomoleio.testfiles.utils.get_sp"]], "get_tfp() (in module turbomoleio.testfiles.utils)": [[9, "turbomoleio.testfiles.utils.get_tfp"]], "gisnan() (in module turbomoleio.testfiles.utils)": [[9, "turbomoleio.testfiles.utils.gisnan"]], "has_matplotlib() (in module turbomoleio.testfiles.utils)": [[9, "turbomoleio.testfiles.utils.has_matplotlib"]], "run_itest() (in module turbomoleio.testfiles.utils)": [[9, "turbomoleio.testfiles.utils.run_itest"]], "temp_dir() (in module turbomoleio.testfiles.utils)": [[9, "turbomoleio.testfiles.utils.temp_dir"]], "tol (turbomoleio.testfiles.utils.itestconfig attribute)": [[9, "turbomoleio.testfiles.utils.ItestConfig.tol"]], "touch_file() (in module turbomoleio.testfiles.utils)": [[9, "turbomoleio.testfiles.utils.touch_file"]], "turbomoleio.testfiles": [[9, "module-turbomoleio.testfiles"]], "turbomoleio.testfiles.utils": [[9, "module-turbomoleio.testfiles.utils"]]}}) \ No newline at end of file diff --git a/docs_rst/index.rst b/docs_rst/index.rst index 85a6ef5..714e8d9 100644 --- a/docs_rst/index.rst +++ b/docs_rst/index.rst @@ -27,14 +27,15 @@ turbomoleio turbomoleio is a python library containing a set of tools for the generation of inputs and parsing of outputs for `TURBOMOLE `_, based on the open-source `pymatgen `_ library. turbomoleio is compatible with python version 3.8 and higher. The current version of turbomoleio is -compatible with TURBOMOLE version 7.5. Care is taken to provide backward compatibility for parsing of output +compatible with TURBOMOLE version 7.6. Care is taken to provide backward compatibility for parsing of output files generated with versions of TURBOMOLE down to 7.3. Full compatibility (i.e. input generation using define) -is only tested for TURBOMOLE version 7.5. The following table summarizes the compatibility (full, including input +is only tested for TURBOMOLE version 7.6. The following table summarizes the compatibility (full, including input generation using define) between TURBOMOLE and turbomoleio versions: ======================= ======================= TURBOMOLE version(s) turbomoleio version(s) ======================= ======================= +7.6 series 1.4.x series 7.5 series 1.3.x series 7.4 series 1.2.x series 7.3 series 1.0.x and 1.1.x series diff --git a/pyproject.toml b/pyproject.toml index 94e2e45..96b6f4a 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "turbomoleio" -version = "1.3.1" +version = "1.4.0" description = """\ Turbomoleio is a python package containing a set of tools \ for the generation of inputs and parsing of outputs for \ diff --git a/turbomoleio/__version__.py b/turbomoleio/__version__.py index 466bb7f..ae5e5f4 100644 --- a/turbomoleio/__version__.py +++ b/turbomoleio/__version__.py @@ -35,4 +35,4 @@ open-source `pymatgen `_ library. Turbomoleio is compatible with python version 3.8+. Full documentation can be found on ``_. """ -__version__ = "1.3.1" +__version__ = "1.4.0" diff --git a/turbomoleio/output/parser.py b/turbomoleio/output/parser.py index d10d5a5..0307971 100644 --- a/turbomoleio/output/parser.py +++ b/turbomoleio/output/parser.py @@ -409,12 +409,15 @@ def header(self): # In this case turbomole version and build will be set to None. # For example it may be: # escf (node001) : TURBOMOLE rev. compiled 1 Jul 2018 at 20:38:15 - r_version = r"V([\d\.]+\d)\s+.*" + # + # Note: TURBOMOLE 7.6 uses the notation 7-6. Catch it and convert to 7.6 + r_version = r"V([\d\.-]+\d)\s+.*" r_build = r"V[\d\.]+\d\s+\((.*)\)" match_version = re.search(r_version, match.group(3).strip()) match_build = re.search(r_build, match.group(3).strip()) if match_version: tm_version = match_version.group(1).strip() + tm_version = tm_version.replace("-", ".") else: tm_version = None if match_build: diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/aoforce/aceton_full/aoforce.log b/turbomoleio/testfiles/outputs/TM_v7.6/aoforce/aceton_full/aoforce.log new file mode 100644 index 0000000..97ded4a --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/aoforce/aceton_full/aoforce.log @@ -0,0 +1,844 @@ + + force (frontal3) : TURBOMOLE rev. V7-6 19 Oct 2021 at 10:10:11 compiled Oct 19th 2021 + Copyright (C) 2021 TURBOMOLE GmbH, Karlsruhe + + + 2023-01-25 00:18:05.960 + + + + T U R B O M O L E + + a o f o r c e - program + + using direct algorithms for + + SCF level calculations of + * harmonic force constants + * hyperpolarizabilities + * IR and RAMAN intensities + * VCD intensities + + DFT level calculations of + * harmonic force constants + * IR intensities + + Stephan Boecker, Peter Deglmann, Filipp Furche and Marco Haeser + Quantum Chemistry Group + Universitaet Karlsruhe + Germany + + + + + + References : + + RI-J implementation: + Peter Deglmann, Klaus May, Filipp Furche, Reinhart Ahlrichs + Chem. Phys. Lett. 384:103 (2004) + + Efficiency, technical details: + Peter Deglmann, Filipp Furche, Reinhart Ahlrichs + Chem. Phys. Lett. 362:511 (2002) + + Search of lowest eigenvalues by iterative diagonalization: + Peter Deglmann, Filipp Furche + J. Chem. Phys. 117:9535 (2002) + + Vibrational circular dichroism implementation: + Kevin Reiter, Michael Kuehn, Florian Weigend + J. Chem. Phys. 146:054102 (2017) + + + + + +--------------------------------------------------+ + | Atomic coordinate, charge and isotop information | + +--------------------------------------------------+ + + atomic coordinates atom charge isotop + 0.05814498 -3.50738391 0.00000000 o 8.000 0 + 2.43488579 0.35436813 0.00000000 c 6.000 0 + -2.48030013 0.26702469 0.00000000 c 6.000 0 + -0.00509977 -1.20231423 0.00000000 c 6.000 0 + 2.11408643 2.42830913 0.00000000 h 1.000 0 + -4.10640229 -1.05476626 0.00000000 h 1.000 0 + 3.57887083 -0.16668276 1.68562205 h 1.000 0 + 3.57887083 -0.16668276 -1.68562205 h 1.000 0 + -2.58652834 1.52406399 1.68701865 h 1.000 0 + -2.58652834 1.52406399 -1.68701865 h 1.000 0 + + center of nuclear mass : 0.00543831 -1.01535818 0.00000000 + center of nuclear charge: 0.00482639 -0.85800920 0.00000000 + + ************************************************************************* + dscf + ************************************************************************* + + + + +--------------------------------------------------+ + | basis set information | + +--------------------------------------------------+ + + we will work with the 1s 3p 5d 7f 9g ... basis set + ...i.e. with spherical basis functions... + + type atoms prim cont basis + --------------------------------------------------------------------------- + o 1 24 14 def-SV(P) [3s2p1d|7s4p1d] + c 3 24 14 def-SV(P) [3s2p1d|7s4p1d] + h 6 4 2 def-SV(P) [2s|4s] + --------------------------------------------------------------------------- + total: 10 120 68 + --------------------------------------------------------------------------- + + total number of primitive shells : 28 + total number of contracted shells : 36 + total number of cartesian basis functions : 72 + total number of SCF-basis functions : 68 + + + symmetry group of the molecule : cs + + the group has the following generators : + c1(z) + mirror plane sigma(xy) + + 2 symmetry operations found + + there are 2 real representations : a' a" + + maximum number of shells which are related by symmetry : 2 + + + determining totally symmetric integral contributions + - equivalent to irreducible tensor elements - + which can be formed within each triple of representations : + + representation triple contributions + + a' a' a' 1 + a' a" a" 1 + a" a' a" 1 + a" a" a' 1 + + mo occupation : + irrep mo's occupied + a' 48 13 + a" 20 3 + + number of basis functions : 68 + number of occupied orbitals : 16 + + MOs are in ASCII format ! + + + reading orbital data $scfmo from file mos + orbital characterization : scfconv=8 + time elapsed for calculating density matrices : 0.001 sec + + number of non-frozen orbitals : 68 + number of non-frozen occupied orbitals : 16 + Blocking parameters + shells: + index start shell last shell start bf last bf #bf + 1 1 36 1 72 72 + size of I/O Block in Byte: 1244160 + + ------------------ + density functional + ------------------ + B-P86 functional + exchange: LDA + Becke (B88) + correlation: LDA (VWN) + Perdew (P86) + + iterations will be done with small grid + + spherical integration : Lebedev's spherical grid + spherical gridsize : 3 + i.e. gridpoints : 302 + value for diffuse not defined + radial integration : Chebyshev 2nd kind (scaling 3) + radial gridsize : 3 + integration cells : 8 + partition function : becke + partition sharpness : 3 + + + Derivatives of quadrature weights will be included + + preparing DFT numerical integration .... + Overall gridpoints after grid construction = 24534 + Ordering of quadrature gridpoints disabled. + + + + + OCCUPIED-OCCUPIED TENSOR SPACES : + + IRREP tensor space dimension number of roots + + a' 178 15 + a" 78 9 + + OCCUPIED-VIRTUAL TENSOR SPACES : + + IRREP tensor space dimension number of roots + + a' 506 15 + a" 326 9 + + + + + CONSTRUCTING integral bounds + + setting up bound for integral derivative estimation + + increment for numerical differentiation : 0.00050000 + + machine precision: 2.220446049250313E-016 + + integral neglect threshold : 0.10E-09 + integral storage threshold THIZE : 0.10E-04 + integral storage threshold THIME : 5 + + + + + PREPARING NUMERICAL INTEGRATION + + Remaining core memory for DFT = 497 MB + + Memory needed per atom = 61 KiB + + i. e. 10 atoms per loop + + Calculating ground state density on molecular grid + + Integral of ground state density: N = 32.00001039751107 + + + + + CONSTRUCTING first deriv. of -> Dip. deriv. + dipole integral derivatives will be neglected if + expon. factor <0.694444E-12 + ...terminated. cpu: 0.00 wall: 0.00 + + + + + CONSTRUCTING first deriv. of + -> RHS + second deriv. of -> Hessian + -> Hessian + nucl. rep. -> Hessian + integrals are neglected if expon. factor < 6.944444444444444E-014 + ...terminated. cpu: 0.04 wall: 0.06 + + + + + CONSTRUCTING second deriv. of 2e energy -> Hessian + treating Coulomb (and exchange) contribution + integrals will be neglected if total contribution < 6.944444444444444E-010 + ...terminated. cpu: 1.78 wall: 1.78 + treating exchange-correlation contribution + ...terminated. cpu: 2.06 wall: 2.06 + + + + + CONSTRUCTING S(i,j)xi + ...terminated. cpu: 0.00 wall: 0.02 + + + + + CONSTRUCTING *S(i,j)xi -> Dip. deriv. + ...terminated. cpu: 0.00 wall: 0.01 + + + + + CONSTRUCTING epsilon(i)*S(i,j)xi*S(i,j)chi -> Hessian + ...terminated. cpu: 0.00 wall: 0.01 + + + + + CONSTRUCTING G(a,i)[S(k,l)xi] -> RHS + G(i,j)[S(k,l)xi]*S(i,j)chi -> Hessian + + Maximum core memory set to 500 MB + This corresponds to 12082 vectors in CAO basis + ...terminated. cpu: 0.99 wall: 1.11 + + + + + CONSTRUCTING G(mu,nu)[D(kap,lam)]xi + + Maximum core memory set to 500 MB + Atoms treated simultaneously : 10 + max of dfo 6.84546970462346 + ...terminated. cpu: 1.58 wall: 1.62 + + + + + CONSTRUCTING F(a,i)xi -> RHS + F(i,j)xi*S(i,j)chi -> Hessian + + Maximum core memory set to 500 MB + This corresponds to 20911 vectors in CAO basis + ...terminated. cpu: 0.00 wall: 0.03 + + + + + CONSTRUCTING epsilon(i)*S(a,i)xi -> RHS + ...terminated. cpu: 0.00 wall: 0.03 + + + + + SOLVING CPHF equations + + Residuum convergence criterium : 1.000000000000000E-005 + + Maximum number of Davidson iterations set to 25 + + logfile cphf_a' will be constructed + + logfile cphf_a" will be constructed + Switching to small grid + preparing DFT numerical integration .... + Overall gridpoints after grid construction = 6727 + + Calculating ground state density on molecular grid + + Integral of ground state density: N = 32.00124448156419 + + + + + Nonorthonormal Krylov Space Iteration + + + total number of roots to be determined: 24 + + + maximum core memory set to 500 MB, + corresponding to 12082 vectors in CAO basis + + + maximum number of simultaneously treated vectors (including degeneracy): 24 + + + Iteration IRREP Converged Max. Euclidean + roots residual norm + + 1 a' 0 6.477864201546545D-02 + a" 0 2.101071400167658D-02 + + 2 a' 0 3.108084414748305D-03 + a" 0 2.142588191202605D-03 + + 3 a' 0 1.493542249240670D-04 + a" 0 1.131083813417664D-04 + + 4 a' 15 3.352126044199397D-06 + a" 9 1.725170449884324D-06 + + + converged! + + Switching to fine grid + preparing numerical DFT integration .... + Overall gridpoints after grid construction = 24534 + + Calculating ground state density on molecular grid + + Integral of ground state density: N = 32.00001039751096 + + + + Iteration IRREP Converged Max. Euclidean + roots residual norm + + 5 a' 0 7.333438424219129D-05 + a" 1 3.947239674627336D-05 + + + NOTE: Residual norms are larger than 1.00D-05 due to mgrid option! + + ...terminated. cpu: 2.91 wall: 4.14 + + + + + CONSTRUCTING *U(a,i)xi -> Dip. deriv. + ...terminated. cpu: 0.00 wall: 0.03 + + + + + CONSTRUCTING RHS(a,i)xi*U(a,i)chi -> Hessian + ...terminated. cpu: 0.00 wall: 0.02 + + + + + + ----------------------- + permanent dipole moment + ----------------------- + + x y z + electronic part : -0.1320527169 28.4792736263 0.0000000000 + nuclear part : 0.1544443291 -27.4562944460 0.0000000000 + total : 0.0223916123 1.0229791802 0.0000000000 + + with reference to the point : 0.0000000 0.0000000 0.0000000 + (given in atomic units) + | dipole | : 2.6007961843 debye + + *** dipole moment & cartesian dipole gradients written onto + $dipole, $dipgrad, file= *** + + ----------------------------------- + rotational and vibrational analysis + ----------------------------------- + + + ============================================================== + ATOMIC WEIGHTS (average over the natural occurance of isotops) + ============================================================== + ('*' denotes special isotop !) + 1 o 15.99940 + 2 c 12.01115 + 3 c 12.01115 + 4 c 12.01115 + 5 h 1.00797 + 6 h 1.00797 + 7 h 1.00797 + 8 h 1.00797 + 9 h 1.00797 + 10 h 1.00797 + + ------------------------------------------------- + CARTESIAN FORCE CONSTANT MATRIX (hartree/bohr**2) + (translational & rotational space projected out) + ------------------------------------------------- + + ATOM 1 o 2 c + dx dy dz dx dy dz + 1 o dx 0.0913170 + dy -0.0209348 0.8146043 + dz 0.0000000 0.0000000 0.0233904 + 2 c dx 0.0091027-0.0236357 0.0000000 0.4557639 + dy -0.0377307-0.0460284 0.0000000-0.0514885 0.5439242 + dz 0.0000000 0.0000000 0.0144987 0.0000000 0.0000000 0.5005750 + 3 c dx 0.0065161 0.0227628 0.0000000-0.0228034 0.0086204 0.0000000 + dy 0.0411011-0.0456585 0.0000000-0.0111798 0.0098318 0.0000000 + dz 0.0000000 0.0000000 0.0266572 0.0000000 0.0000000 0.0162371 + 4 c dx -0.1041944 0.0192110 0.0000000-0.1574393-0.0358888 0.0000000 + dy 0.0166642-0.7194296 0.0000000-0.0231301-0.0924610 0.0000000 + dz 0.0000000 0.0000000-0.0667069 0.0000000 0.0000000-0.0778951 + 5 h dx -0.0066643-0.0063504 0.0000000-0.0539389 0.0441601 0.0000000 + dy -0.0059735-0.0023413 0.0000000 0.0401411-0.2957971 0.0000000 + dz 0.0000000 0.0000000 0.0030133 0.0000000 0.0000000-0.0449312 + 6 h dx 0.0055322 0.0002087 0.0000000-0.0029683 0.0038922 0.0000000 + dy -0.0015039 0.0013546 0.0000000 0.0021558-0.0013958 0.0000000 + dz 0.0000000 0.0000000-0.0013635 0.0000000 0.0000000 0.0031039 + 7 h dx 0.0026664 0.0016599 0.0027691-0.1135505 0.0348737-0.1174381 + dy -0.0000239-0.0006543 0.0023441 0.0339304-0.0595703 0.0521337 + dz 0.0000204-0.0006834 0.0012572-0.1137919 0.0526290-0.2061868 + 8 h dx 0.0026664 0.0016599-0.0027691-0.1135505 0.0348737 0.1174381 + dy -0.0000239-0.0006543-0.0023441 0.0339304-0.0595703-0.0521337 + dz -0.0000204 0.0006834 0.0012572 0.1137919-0.0526290-0.2061868 + 9 h dx -0.0034711 0.0027093-0.0036452-0.0003078-0.0006560-0.0029263 + dy 0.0042126-0.0005962 0.0023117-0.0003618 0.0005335 0.0018734 + dz 0.0002208 0.0013222-0.0010018 0.0002436-0.0005195 0.0003925 + 10 h dx -0.0034711 0.0027093 0.0036452-0.0003078-0.0006560 0.0029263 + dy 0.0042126-0.0005962-0.0023117-0.0003618 0.0005335-0.0018734 + dz -0.0002208-0.0013222-0.0010018-0.0002436 0.0005195 0.0003925 + + ATOM 3 c 4 c + dx dy dz dx dy dz + 3 c dx 0.4840557 + dy 0.0668786 0.5306872 + dz 0.0000000 0.0000000 0.4931068 + 4 c dx -0.1712406 0.0253591 0.0000000 0.4700503 + dy 0.0272593-0.0876386 0.0000000-0.0162746 0.9184458 + dz 0.0000000 0.0000000-0.0851780 0.0000000 0.0000000 0.2288788 + 5 h dx -0.0003227 0.0011608 0.0000000 0.0122792-0.0247092 0.0000000 + dy 0.0006916 0.0014233 0.0000000 0.0098541-0.0124002 0.0000000 + dz 0.0000000 0.0000000 0.0003461 0.0000000 0.0000000-0.0041548 + 6 h dx -0.2006438-0.1282381 0.0000000-0.0226061-0.0222595 0.0000000 + dy -0.1325824-0.1531023 0.0000000 0.0143058 0.0113448 0.0000000 + dz 0.0000000 0.0000000-0.0465157 0.0000000 0.0000000-0.0010137 + 7 h dx -0.0023107-0.0028874 0.0022828-0.0170527 0.0068515-0.0223042 + dy -0.0006888-0.0002884 0.0014497-0.0070282 0.0037375-0.0157083 + dz 0.0002719-0.0004800-0.0004569 0.0023968 0.0004542 0.0009674 + 8 h dx -0.0023107-0.0028874-0.0022828-0.0170527 0.0068515 0.0223042 + dy -0.0006888-0.0002884-0.0014497-0.0070282 0.0037375 0.0157083 + dz -0.0002719 0.0004800-0.0004569-0.0023968-0.0004542 0.0009674 + 9 h dx -0.0454700 0.0053466 0.0129010 0.0036281 0.0143734 0.0247054 + dy 0.0038736-0.1274830-0.1256112-0.0012551-0.0126681-0.0123443 + dz 0.0099487-0.1221293-0.2018698-0.0013370 0.0011797 0.0020674 + 10 h dx -0.0454700 0.0053466-0.0129010 0.0036281 0.0143734-0.0247054 + dy 0.0038736-0.1274830 0.1256112-0.0012551-0.0126681 0.0123443 + dz -0.0099487 0.1221293-0.2018698 0.0013370-0.0011797 0.0020674 + + ATOM 5 h 6 h + dx dy dz dx dy dz + 5 h dx 0.0539948 + dy -0.0440257 0.3166285 + dz 0.0000000 0.0000000 0.0420425 + 6 h dx 0.0006959 0.0003399 0.0000000 0.2158177 + dy 0.0000021 0.0001263 0.0000000 0.1393128 0.1583163 + dz 0.0000000 0.0000000-0.0000904 0.0000000 0.0000000 0.0426306 + 7 h dx -0.0023523-0.0001010-0.0020402-0.0009894 0.0003609 0.0005794 + dy 0.0149379-0.0040357 0.0236514-0.0001596 0.0002151 0.0000702 + dz 0.0023659-0.0010125 0.0019808 0.0000811 0.0000223-0.0001426 + 8 h dx -0.0023523-0.0001010 0.0020402-0.0009894 0.0003609-0.0005794 + dy 0.0149379-0.0040357-0.0236514-0.0001596 0.0002151-0.0000702 + dz -0.0023659 0.0010125 0.0019808-0.0000811-0.0000223-0.0001426 + 9 h dx -0.0006697-0.0004127 0.0002158 0.0030756-0.0112060-0.0191188 + dy -0.0000567 0.0002160 0.0000310 0.0035316-0.0085371-0.0134284 + dz 0.0001632 0.0003657-0.0000935-0.0003347 0.0023959 0.0017670 + 10 h dx -0.0006697-0.0004127-0.0002158 0.0030756-0.0112060 0.0191188 + dy -0.0000567 0.0002160-0.0000310 0.0035316-0.0085371 0.0134284 + dz -0.0001632-0.0003657-0.0000935 0.0003347-0.0023959 0.0017670 + + ATOM 7 h 8 h + dx dy dz dx dy dz + 7 h dx 0.1233029 + dy -0.0361874 0.0591537 + dz 0.1222934-0.0573306 0.2197784 + 8 h dx 0.0097529-0.0046210-0.0138153 0.1233029 + dy -0.0046210 0.0014931 0.0063772-0.0361874 0.0591537 + dz 0.0138153-0.0063772-0.0171354-0.1222934 0.0573306 0.2197784 + 9 h dx -0.0004521-0.0003514 0.0000589 0.0009855 0.0001920-0.0001187 + dy 0.0003572-0.0000387-0.0000725-0.0003063-0.0000120-0.0000964 + dz 0.0000229 0.0000223-0.0000054-0.0000198 0.0002554-0.0000567 + 10 h dx 0.0009855 0.0001920 0.0001187-0.0004521-0.0003514-0.0000589 + dy -0.0003063-0.0000120 0.0000964 0.0003572-0.0000387 0.0000725 + dz 0.0000198-0.0002554-0.0000567-0.0000229-0.0000223-0.0000054 + + ATOM 9 h 10 h + dx dy dz dx dy dz + 9 h dx 0.0429582 + dy -0.0083447 0.1373388 + dz -0.0104899 0.1322222 0.2165091 + 10 h dx -0.0002766-0.0016504 0.0015822 0.0429582 + dy -0.0016504 0.0112469-0.0151146-0.0083447 0.1373388 + dz -0.0015822 0.0151146-0.0177087 0.0104899-0.1322222 0.2165091 + + + *** projected hessian written onto $hessian (projected), file= *** + + dipole moment in principle axis system (a.u.) : + 0.0205132454 1.0230185698 0.0000000000 + norm : 1.02322421172582 + + rotational constants b for rotations around axis of inertia + and optical intensities for (1 <-- 0) transition + + b : 0.3345568942 0.2768703230 0.1607738674 (cm**(-1)) + b : 10029.7634 8300.3635 4819.8793 (MHz) + int. : 0.0004207932 1.0465669942 0.0000000000 (a.u.) + + x : 0.9999983143 0.0018361363 0.0000000000 + y : -0.0018361363 0.9999983143 0.0000000000 + z : 0.0000000000 0.0000000000 1.0000000000 + + *** normal modes written onto $vibrational normal modes, file= *** + + Keyword $vibrational reduced masses missing in file + + + *** vibrational spectroscopic data written onto$vibrational spectrum + file= *** + + --------------------------------------------------- + NORMAL MODES and VIBRATIONAL FREQUENCIES (cm**(-1)) + --------------------------------------------------- + + imaginary wave numbers indicate a negative curvature of the energy surface. + zero frequency modes have no physical meaning except being generators of + translations and rotations. each vibrational normal mode - given in terms of + cartesian displacement vectors of all atoms - has been normalized to unity. + to obtain mass-weigthed normal coordinates in a.u. divide the tabulated + modes by sqrt(reduced mass * 1822.88853). + band intensities or cross sections refer to independent non-degenerate normal + modes, that is, the intensities of degenerate modes have yet to be added. + dDIP/dQ is the normal mode derivative of the dipole moment. + + WARNING: values of IR intensities are questionable for saddle point structures + + + mode 1 2 3 4 5 6 + + frequency i113.75 0.00 0.00 0.00 0.00 0.00 + + symmetry a" + + IR YES - - - - - +|dDIP/dQ| (a.u.) 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 +intensity (km/mol) 0.00 0.00 0.00 0.00 0.00 0.00 +intensity ( % ) 0.00 0.00 0.00 0.00 0.00 0.00 + + RAMAN YES - - - - - + + 1 o x 0.00000 0.00267 0.35621 0.08763 -0.03439 0.11162 + y 0.00000 -0.00381 0.03777 -0.12501 0.20845 0.06509 + z 0.04920 -0.10381 -0.02338 0.17167 -0.08436 0.02308 + 2 c x 0.00000 0.00701 -0.01248 0.23021 0.10132 0.14993 + y -0.00000 -0.00648 0.26468 -0.21276 0.12492 0.04151 + z -0.00463 0.05039 0.11331 0.19089 0.21333 -0.33119 + 3 c x 0.00000 0.00691 -0.00414 0.22699 0.09825 0.14906 + y 0.00000 -0.00095 -0.20458 -0.03128 0.29765 0.09027 + z -0.04844 0.38141 -0.02079 0.00400 -0.05039 0.04812 + 4 c x 0.00000 0.00526 0.13614 0.17274 0.04661 0.13449 + y 0.00000 -0.00374 0.03173 -0.12267 0.21067 0.06571 + z 0.01476 0.09020 0.01828 0.12631 0.01499 -0.07520 + 5 h x 0.00000 0.00934 -0.21048 0.30679 0.17420 0.17050 + y -0.00000 -0.00612 0.23406 -0.20091 0.13619 0.04469 + z 0.49283 0.24310 0.14368 0.13995 0.28877 -0.39945 + 6 h x 0.00000 0.00543 0.12205 0.17819 0.05180 0.13595 + y -0.00000 0.00088 -0.35983 0.02876 0.35480 0.10639 + z -0.17600 0.38454 -0.08947 -0.03374 -0.19524 0.23143 + 7 h x 0.28911 0.12241 -0.00816 0.14633 -0.00610 0.27350 + y -0.39613 -0.14646 0.34219 -0.22360 0.00962 0.10557 + z -0.32814 -0.07120 0.13434 0.24447 0.25059 -0.39525 + 8 h x -0.28911 -0.10956 0.08269 0.27562 0.17212 0.01602 + y 0.39613 0.13092 0.40561 -0.28640 0.15982 -0.04523 + z -0.32814 -0.07120 0.13434 0.24447 0.25059 -0.39525 + 9 h x -0.07583 0.12441 -0.16961 0.20870 0.05325 0.29038 + y -0.08110 -0.13964 -0.24646 0.00407 0.22623 0.16678 + z 0.00756 0.49214 0.00000 -0.02349 -0.00000 0.00000 + 10 h x 0.07583 -0.10775 -0.07869 0.33810 0.23161 0.03269 + y 0.08110 0.13797 -0.18298 -0.05879 0.37655 0.01586 + z 0.00756 0.49214 0.00000 -0.02349 0.00000 0.00000 + +reduced mass(g/mol) 1.073 2.890 4.538 4.529 4.193 3.408 + + + mode 7 8 9 10 11 12 + + frequency 0.00 157.28 372.62 482.93 510.25 764.50 + + symmetry a" a' a" a' a' + + IR - YES YES YES YES YES +|dDIP/dQ| (a.u.) 0.0000 0.0006 0.0010 0.0002 0.0026 0.0011 +intensity (km/mol) 0.00 0.56 1.62 0.09 11.66 2.13 +intensity ( % ) 0.00 0.35 1.01 0.06 7.28 1.33 + + RAMAN - YES YES YES YES YES + + 1 o x -0.03882 0.00000 -0.00202 -0.00000 -0.30338 0.01637 + y 0.11693 -0.00000 -0.13173 -0.00000 -0.01027 -0.15249 + z 0.54065 -0.04194 0.00000 -0.10981 0.00000 -0.00000 + 2 c x -0.10279 -0.00000 -0.15353 -0.00000 0.12972 0.25588 + y 0.15630 0.00000 0.10217 0.00000 0.15827 0.09816 + z 0.00710 0.03831 -0.00000 -0.02475 0.00000 0.00000 + 3 c x -0.10135 0.00000 0.15130 0.00000 0.11330 -0.26482 + y 0.07488 -0.00000 0.09522 -0.00000 -0.15172 0.12899 + z 0.15000 0.00319 -0.00000 -0.00355 0.00000 -0.00000 + 4 c x -0.07700 0.00000 0.00089 0.00000 0.13112 -0.00110 + y 0.11588 -0.00000 -0.12991 -0.00000 0.00249 -0.13027 + z 0.26205 0.01891 -0.00000 0.27488 -0.00000 0.00000 + 5 h x -0.13715 -0.00000 -0.48067 -0.00000 -0.21290 0.02868 + y 0.15099 -0.00000 0.05041 0.00000 0.10527 0.06975 + z -0.23645 0.17736 0.00000 -0.27404 0.00000 -0.00000 + 6 h x -0.07945 0.00000 -0.08593 0.00000 0.34096 -0.42225 + y 0.04794 -0.00000 0.38771 -0.00000 -0.42998 0.31167 + z 0.35448 0.48883 -0.00000 -0.31850 0.00000 0.00000 + 7 h x -0.04880 0.05396 -0.07215 0.29513 0.21211 0.32881 + y 0.38022 -0.10868 0.29857 0.24012 0.37329 0.29587 + z 0.03967 -0.03246 0.00552 -0.15284 0.01161 0.01636 + 8 h x -0.13952 -0.05396 -0.07215 -0.29513 0.21211 0.32881 + y -0.02972 0.10868 0.29857 -0.24012 0.37329 0.29587 + z 0.03967 -0.03246 -0.00552 -0.15284 -0.01161 -0.01636 + 9 h x -0.07677 0.18565 0.37944 -0.39216 -0.09751 -0.20217 + y 0.27826 0.45313 0.12585 0.15376 -0.18332 0.14639 + z -0.00000 -0.32776 -0.00784 -0.14852 0.01018 -0.00576 + 10 h x -0.16757 -0.18565 0.37944 0.39216 -0.09751 -0.20217 + y -0.13202 -0.45313 0.12585 -0.15376 -0.18332 0.14639 + z 0.00000 -0.32776 0.00784 -0.14852 -0.01018 0.00576 + +reduced mass(g/mol) 7.394 1.055 2.180 2.027 3.434 3.328 + + + mode 13 14 15 16 17 18 + + frequency 847.27 883.74 1033.97 1070.10 1191.20 1325.01 + + symmetry a" a' a' a" a' a' + + IR YES YES YES YES YES YES +|dDIP/dQ| (a.u.) 0.0004 0.0025 0.0009 0.0022 0.0073 0.0028 +intensity (km/mol) 0.29 10.77 1.31 8.93 93.89 14.38 +intensity ( % ) 0.18 6.73 0.82 5.58 58.65 8.98 + + RAMAN YES YES YES YES YES YES + + 1 o x 0.00000 -0.02543 0.00231 0.00000 -0.05861 -0.00439 + y -0.00000 0.00344 0.10928 0.00000 0.00441 -0.00481 + z 0.00887 -0.00000 0.00000 -0.03972 0.00000 0.00000 + 2 c x 0.00000 0.04893 0.05685 0.00000 -0.09528 0.07082 + y 0.00000 0.13177 -0.13378 -0.00000 0.03471 0.03751 + z -0.09871 -0.00000 0.00000 -0.12919 -0.00000 -0.00000 + 3 c x -0.00000 0.00883 -0.04740 -0.00000 -0.10140 -0.09921 + y 0.00000 -0.13705 -0.11294 -0.00000 -0.05875 0.06613 + z 0.09053 0.00000 0.00000 -0.13327 -0.00000 -0.00000 + 4 c x 0.00000 -0.10674 -0.01233 -0.00000 0.35947 0.03222 + y -0.00000 -0.00362 0.04506 0.00000 0.01218 -0.00465 + z -0.00868 0.00000 -0.00000 0.23053 0.00000 -0.00000 + 5 h x 0.00000 0.56453 -0.52142 -0.00000 -0.05156 -0.29571 + y 0.00000 0.21566 -0.21973 -0.00000 0.02043 -0.02474 + z 0.25154 0.00000 -0.00000 0.30264 -0.00000 0.00000 + 6 h x -0.00000 -0.31827 -0.35028 -0.00000 -0.48655 0.18936 + y 0.00000 0.27153 0.26893 0.00000 0.41366 -0.28673 + z -0.22614 0.00000 -0.00000 0.29357 0.00000 0.00000 + 7 h x -0.40951 -0.03713 0.12207 -0.38597 -0.18980 -0.30023 + y -0.21673 -0.17876 0.30561 -0.13219 -0.35118 -0.18173 + z 0.12035 -0.03584 0.08598 0.10483 -0.05827 0.17634 + 8 h x 0.40951 -0.03713 0.12207 0.38597 -0.18980 -0.30023 + y 0.21673 -0.17876 0.30561 0.13219 -0.35118 -0.18173 + z 0.12035 0.03584 -0.08598 0.10483 0.05827 -0.17634 + 9 h x -0.38405 0.40768 0.31262 0.32467 -0.04587 0.36539 + y 0.21559 -0.03918 0.00395 -0.27049 0.16973 -0.21413 + z -0.10303 -0.04678 -0.06195 0.10253 -0.14986 0.22901 + 10 h x 0.38405 0.40768 0.31262 -0.32467 -0.04587 0.36539 + y -0.21559 -0.03918 0.00395 0.27049 0.16973 -0.21413 + z -0.10303 0.04678 0.06195 0.10253 0.14986 -0.22901 + +reduced mass(g/mol) 1.207 1.568 1.609 1.995 2.747 1.247 + + + mode 19 20 21 22 23 24 + + frequency 1326.94 1395.67 1411.52 1415.09 1417.77 1771.88 + + symmetry a' a' a" a' a" a' + + IR YES YES YES YES YES YES +|dDIP/dQ| (a.u.) 0.0063 0.0033 0.0010 0.0016 0.0032 0.0095 +intensity (km/mol) 71.48 18.88 1.68 4.30 18.37 160.09 +intensity ( % ) 44.65 11.79 1.05 2.69 11.48 100.00 + + RAMAN YES YES YES YES YES YES + + 1 o x -0.00779 -0.00225 0.00000 0.00840 -0.00000 0.01356 + y 0.00576 0.02567 0.00000 0.00642 -0.00000 -0.48840 + z 0.00000 0.00000 -0.00184 -0.00000 -0.00538 0.00000 + 2 c x -0.11716 0.00032 0.00000 0.02680 -0.00000 0.00400 + y -0.03627 0.01345 0.00000 0.06144 -0.00000 -0.04364 + z -0.00000 0.00000 0.03665 0.00000 0.03728 0.00000 + 3 c x -0.09425 0.05318 0.00000 0.00370 -0.00000 0.00794 + y 0.04279 0.02485 -0.00000 -0.01404 0.00000 -0.04548 + z -0.00000 -0.00000 -0.04916 0.00000 0.02593 -0.00000 + 4 c x 0.06430 -0.00440 -0.00000 -0.05267 0.00000 -0.02486 + y 0.00246 -0.01066 -0.00000 -0.00220 0.00000 0.74626 + z -0.00000 -0.00000 -0.00354 0.00000 0.03713 -0.00000 + 5 h x 0.31480 -0.12087 -0.00000 -0.53658 0.00000 -0.22150 + y 0.03143 -0.01070 -0.00000 -0.04001 0.00000 -0.07131 + z 0.00000 -0.00000 -0.41631 -0.00000 -0.58904 -0.00000 + 6 h x 0.12276 -0.25162 0.00000 0.07425 -0.00000 -0.15757 + y -0.21960 0.38711 -0.00000 -0.09481 0.00000 0.20068 + z 0.00000 0.00000 0.61037 -0.00000 -0.39737 0.00000 + 7 h x 0.40876 0.09384 -0.02964 0.27006 -0.09009 0.07178 + y 0.12013 -0.09757 -0.25889 -0.38888 -0.40060 0.02997 + z -0.29765 -0.09518 -0.03198 -0.29869 -0.03534 -0.03159 + 8 h x 0.40876 0.09384 0.02964 0.27006 0.09009 0.07178 + y 0.12013 -0.09757 0.25889 -0.38888 0.40060 0.02997 + z 0.29765 0.09518 -0.03198 0.29869 -0.03534 0.03159 + 9 h x 0.31078 -0.18232 -0.36575 0.02654 0.26176 0.08715 + y -0.12524 -0.45896 -0.14298 0.13597 0.08217 -0.13378 + z 0.14469 0.33551 0.04512 -0.10780 -0.02664 0.08768 + 10 h x 0.31078 -0.18232 0.36575 0.02654 -0.26176 0.08715 + y -0.12524 -0.45896 0.14298 0.13597 -0.08217 -0.13378 + z -0.14469 -0.33551 0.04512 0.10780 -0.02664 -0.08768 + +reduced mass(g/mol) 1.338 1.059 1.050 1.092 1.046 10.766 + + + mode 25 26 27 28 29 30 + + frequency 2935.92 2950.81 3011.16 3036.78 3053.95 3072.08 + + symmetry a' a' a" a" a' a' + + IR YES YES YES YES YES YES +|dDIP/dQ| (a.u.) 0.0010 0.0012 0.0017 0.0010 0.0026 0.0021 +intensity (km/mol) 1.72 2.54 5.02 1.91 12.26 7.71 +intensity ( % ) 1.07 1.59 3.14 1.20 7.66 4.81 + + RAMAN YES YES YES YES YES YES + + 1 o x -0.00020 0.00012 -0.00000 -0.00000 0.00033 0.00018 + y -0.00069 -0.00042 0.00000 -0.00000 -0.00036 0.00109 + z 0.00000 0.00000 0.00024 0.00025 0.00000 -0.00000 + 2 c x -0.00495 0.04679 -0.00000 0.00000 -0.04367 0.00303 + y -0.00297 0.01958 -0.00000 -0.00000 0.08379 -0.00518 + z 0.00000 0.00000 -0.00123 -0.09206 -0.00000 0.00000 + 3 c x -0.03180 -0.00371 -0.00000 0.00000 -0.00391 -0.05688 + y 0.04186 0.00491 -0.00000 0.00000 -0.00472 -0.07396 + z -0.00000 0.00000 0.09178 -0.00116 0.00000 -0.00000 + 4 c x 0.00191 -0.00149 0.00000 0.00000 -0.00183 -0.00014 + y 0.00044 -0.00064 -0.00000 0.00000 0.00073 -0.00276 + z -0.00000 0.00000 0.00054 -0.00087 -0.00000 0.00000 + 5 h x -0.01165 0.09064 -0.00000 -0.00000 0.13433 -0.00695 + y 0.06920 -0.52493 0.00000 0.00000 -0.82891 0.05536 + z -0.00000 0.00000 0.00043 -0.01210 -0.00000 0.00000 + 6 h x 0.30746 0.03743 0.00000 -0.00000 0.04990 0.70907 + y 0.25797 0.02953 0.00000 -0.00000 0.04004 0.57724 + z 0.00000 -0.00000 0.01295 -0.00007 0.00000 -0.00000 + 7 h x 0.03293 -0.31537 0.00389 0.38866 0.19923 -0.01273 + y -0.01690 0.15136 -0.00117 -0.17999 -0.08421 0.00553 + z 0.05137 -0.47757 0.00643 0.55873 0.30662 -0.01830 + 8 h x 0.03293 -0.31537 -0.00389 -0.38866 0.19923 -0.01273 + y -0.01690 0.15136 0.00117 0.17999 -0.08421 0.00553 + z -0.05137 0.47757 0.00643 0.55873 -0.30662 0.01830 + 9 h x 0.02841 0.00263 0.03485 -0.00119 0.00035 -0.01808 + y -0.37552 -0.04245 -0.42824 0.00461 0.00605 0.15752 + z -0.51939 -0.05854 -0.55771 0.00598 0.00808 0.22453 + 10 h x 0.02841 0.00263 -0.03485 0.00119 0.00035 -0.01808 + y -0.37552 -0.04245 0.42824 -0.00461 0.00605 0.15752 + z 0.51939 0.05854 -0.55771 0.00598 -0.00808 -0.22453 + +reduced mass(g/mol) 1.039 1.037 1.101 1.101 1.107 1.104 + + + ************************************************************** + * * + * zero point VIBRATIONAL energy : 0.0807347 Hartree * + * SCF-energy : -193.0049629 * + * SCF + E(vib0) : -192.9242282 * + * * + ************************************************************** + + + + + time elapsed for vibrational analysis 0.02 sec + + + ------------------------------------------------------------------------ + total cpu-time : 9.86 seconds + total wall-time : 12.30 seconds + ------------------------------------------------------------------------ + + **** force : all done **** + + + 2023-01-25 00:18:18.200 + diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/aoforce/aceton_full/ref_output.json b/turbomoleio/testfiles/outputs/TM_v7.6/aoforce/aceton_full/ref_output.json new file mode 100644 index 0000000..39566dd --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/aoforce/aceton_full/ref_output.json @@ -0,0 +1,1971 @@ +{ + "@module": "turbomoleio.output.files", + "@class": "AoforceOutput", + "@version": "1.3.0", + "numerical_integration": { + "@module": "turbomoleio.output.data", + "@class": "AoforceNumericalIntegrationData", + "@version": "1.3.0", + "core_memory_dft": 497, + "memory_per_atom": 61, + "atoms_per_loop": 10, + "construction_timings": [ + [ + " first deriv. of -> Dip. deriv.", + 0.0, + 0.0 + ], + [ + " first deriv. of \n -> RHS\n second deriv. of -> Hessian\n -> Hessian\n nucl. rep. -> Hessian", + 0.04, + 0.06 + ], + [ + " second deriv. of 2e energy -> Hessian\n treating Coulomb (and exchange) contribution", + 1.78, + 1.78 + ], + [ + " second deriv. of 2e energy -> Hessian\n treating exchange-correlation contribution", + 2.06, + 2.06 + ], + [ + "", + 0.0, + 0.02 + ], + [ + " *S(i,j)xi -> Dip. deriv.", + 0.0, + 0.01 + ], + [ + " epsilon(i)*S(i,j)xi*S(i,j)chi -> Hessian", + 0.0, + 0.01 + ], + [ + " G(a,i)[S(k,l)xi] -> RHS\n G(i,j)[S(k,l)xi]*S(i,j)chi -> Hessian", + 0.99, + 1.11 + ], + [ + " G(mu,nu)[D(kap,lam)]xi", + 1.58, + 1.62 + ], + [ + " F(a,i)xi -> RHS\n F(i,j)xi*S(i,j)chi -> Hessian", + 0.0, + 0.03 + ], + [ + " epsilon(i)*S(a,i)xi -> RHS", + 0.0, + 0.03 + ], + [ + " *U(a,i)xi -> Dip. deriv.", + 0.0, + 0.03 + ], + [ + " RHS(a,i)xi*U(a,i)chi -> Hessian", + 0.0, + 0.02 + ] + ] + }, + "rotational": { + "@module": "turbomoleio.output.data", + "@class": "AoforceRotationalData", + "@version": "1.3.0", + "b": [ + 0.3345568942, + 0.276870323, + 0.1607738674 + ], + "intensities": [ + 0.0004207932, + 1.0465669942, + 0.0 + ], + "m": [ + [ + 0.9999983143, + 0.0018361363, + 0.0 + ], + [ + -0.0018361363, + 0.9999983143, + 0.0 + ], + [ + 0.0, + 0.0, + 1.0 + ] + ], + "dipole_moment": [ + 0.0205132454, + 1.0230185698, + 0.0 + ] + }, + "vibrational": { + "@module": "turbomoleio.output.data", + "@class": "AoforceVibrationalData", + "@version": "1.3.0", + "frequencies": [ + -113.75, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 157.28, + 372.62, + 482.93, + 510.25, + 764.5, + 847.27, + 883.74, + 1033.97, + 1070.1, + 1191.2, + 1325.01, + 1326.94, + 1395.67, + 1411.52, + 1415.09, + 1417.77, + 1771.88, + 2935.92, + 2950.81, + 3011.16, + 3036.78, + 3053.95, + 3072.08 + ], + "symmetries": [ + "a\"", + null, + null, + null, + null, + null, + "a\"", + "a'", + "a\"", + "a'", + "a'", + null, + "a\"", + "a'", + "a'", + "a\"", + "a'", + "a'", + "a'", + "a'", + "a\"", + "a'", + "a\"", + "a'", + "a'", + "a'", + "a\"", + "a\"", + "a'", + "a'" + ], + "ir": [ + true, + null, + null, + null, + null, + null, + null, + true, + true, + true, + true, + true, + true, + true, + true, + true, + true, + true, + true, + true, + true, + true, + true, + true, + true, + true, + true, + true, + true, + true + ], + "dDIP_dQ": [ + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0006, + 0.001, + 0.0002, + 0.0026, + 0.0011, + 0.0004, + 0.0025, + 0.0009, + 0.0022, + 0.0073, + 0.0028, + 0.0063, + 0.0033, + 0.001, + 0.0016, + 0.0032, + 0.0095, + 0.001, + 0.0012, + 0.0017, + 0.001, + 0.0026, + 0.0021 + ], + "intensities": [ + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.56, + 1.62, + 0.09, + 11.66, + 2.13, + 0.29, + 10.77, + 1.31, + 8.93, + 93.89, + 14.38, + 71.48, + 18.88, + 1.68, + 4.3, + 18.37, + 160.09, + 1.72, + 2.54, + 5.02, + 1.91, + 12.26, + 7.71 + ], + "intensities_perc": [ + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.35, + 1.01, + 0.06, + 7.28, + 1.33, + 0.18, + 6.73, + 0.82, + 5.58, + 58.65, + 8.98, + 44.65, + 11.79, + 1.05, + 2.69, + 11.48, + 100.0, + 1.07, + 1.59, + 3.14, + 1.2, + 7.66, + 4.81 + ], + "raman": [ + true, + null, + null, + null, + null, + null, + null, + true, + true, + true, + true, + true, + true, + true, + true, + true, + true, + true, + true, + true, + true, + true, + true, + true, + true, + true, + true, + true, + true, + true + ], + "eigenvectors": [ + [ + [ + 0.0, + 0.0, + 0.0492 + ], + [ + 0.0, + -0.0, + -0.00463 + ], + [ + 0.0, + 0.0, + -0.04844 + ], + [ + 0.0, + 0.0, + 0.01476 + ], + [ + 0.0, + -0.0, + 0.49283 + ], + [ + 0.0, + -0.0, + -0.176 + ], + [ + 0.28911, + -0.39613, + -0.32814 + ], + [ + -0.28911, + 0.39613, + -0.32814 + ], + [ + -0.07583, + -0.0811, + 0.00756 + ], + [ + 0.07583, + 0.0811, + 0.00756 + ] + ], + [ + [ + 0.00267, + -0.00381, + -0.10381 + ], + [ + 0.00701, + -0.00648, + 0.05039 + ], + [ + 0.00691, + -0.00095, + 0.38141 + ], + [ + 0.00526, + -0.00374, + 0.0902 + ], + [ + 0.00934, + -0.00612, + 0.2431 + ], + [ + 0.00543, + 0.00088, + 0.38454 + ], + [ + 0.12241, + -0.14646, + -0.0712 + ], + [ + -0.10956, + 0.13092, + -0.0712 + ], + [ + 0.12441, + -0.13964, + 0.49214 + ], + [ + -0.10775, + 0.13797, + 0.49214 + ] + ], + [ + [ + 0.35621, + 0.03777, + -0.02338 + ], + [ + -0.01248, + 0.26468, + 0.11331 + ], + [ + -0.00414, + -0.20458, + -0.02079 + ], + [ + 0.13614, + 0.03173, + 0.01828 + ], + [ + -0.21048, + 0.23406, + 0.14368 + ], + [ + 0.12205, + -0.35983, + -0.08947 + ], + [ + -0.00816, + 0.34219, + 0.13434 + ], + [ + 0.08269, + 0.40561, + 0.13434 + ], + [ + -0.16961, + -0.24646, + 0.0 + ], + [ + -0.07869, + -0.18298, + 0.0 + ] + ], + [ + [ + 0.08763, + -0.12501, + 0.17167 + ], + [ + 0.23021, + -0.21276, + 0.19089 + ], + [ + 0.22699, + -0.03128, + 0.004 + ], + [ + 0.17274, + -0.12267, + 0.12631 + ], + [ + 0.30679, + -0.20091, + 0.13995 + ], + [ + 0.17819, + 0.02876, + -0.03374 + ], + [ + 0.14633, + -0.2236, + 0.24447 + ], + [ + 0.27562, + -0.2864, + 0.24447 + ], + [ + 0.2087, + 0.00407, + -0.02349 + ], + [ + 0.3381, + -0.05879, + -0.02349 + ] + ], + [ + [ + -0.03439, + 0.20845, + -0.08436 + ], + [ + 0.10132, + 0.12492, + 0.21333 + ], + [ + 0.09825, + 0.29765, + -0.05039 + ], + [ + 0.04661, + 0.21067, + 0.01499 + ], + [ + 0.1742, + 0.13619, + 0.28877 + ], + [ + 0.0518, + 0.3548, + -0.19524 + ], + [ + -0.0061, + 0.00962, + 0.25059 + ], + [ + 0.17212, + 0.15982, + 0.25059 + ], + [ + 0.05325, + 0.22623, + -0.0 + ], + [ + 0.23161, + 0.37655, + 0.0 + ] + ], + [ + [ + 0.11162, + 0.06509, + 0.02308 + ], + [ + 0.14993, + 0.04151, + -0.33119 + ], + [ + 0.14906, + 0.09027, + 0.04812 + ], + [ + 0.13449, + 0.06571, + -0.0752 + ], + [ + 0.1705, + 0.04469, + -0.39945 + ], + [ + 0.13595, + 0.10639, + 0.23143 + ], + [ + 0.2735, + 0.10557, + -0.39525 + ], + [ + 0.01602, + -0.04523, + -0.39525 + ], + [ + 0.29038, + 0.16678, + 0.0 + ], + [ + 0.03269, + 0.01586, + 0.0 + ] + ], + [ + [ + -0.03882, + 0.11693, + 0.54065 + ], + [ + -0.10279, + 0.1563, + 0.0071 + ], + [ + -0.10135, + 0.07488, + 0.15 + ], + [ + -0.077, + 0.11588, + 0.26205 + ], + [ + -0.13715, + 0.15099, + -0.23645 + ], + [ + -0.07945, + 0.04794, + 0.35448 + ], + [ + -0.0488, + 0.38022, + 0.03967 + ], + [ + -0.13952, + -0.02972, + 0.03967 + ], + [ + -0.07677, + 0.27826, + -0.0 + ], + [ + -0.16757, + -0.13202, + 0.0 + ] + ], + [ + [ + 0.0, + -0.0, + -0.04194 + ], + [ + -0.0, + 0.0, + 0.03831 + ], + [ + 0.0, + -0.0, + 0.00319 + ], + [ + 0.0, + -0.0, + 0.01891 + ], + [ + -0.0, + -0.0, + 0.17736 + ], + [ + 0.0, + -0.0, + 0.48883 + ], + [ + 0.05396, + -0.10868, + -0.03246 + ], + [ + -0.05396, + 0.10868, + -0.03246 + ], + [ + 0.18565, + 0.45313, + -0.32776 + ], + [ + -0.18565, + -0.45313, + -0.32776 + ] + ], + [ + [ + -0.00202, + -0.13173, + 0.0 + ], + [ + -0.15353, + 0.10217, + -0.0 + ], + [ + 0.1513, + 0.09522, + -0.0 + ], + [ + 0.00089, + -0.12991, + -0.0 + ], + [ + -0.48067, + 0.05041, + 0.0 + ], + [ + -0.08593, + 0.38771, + -0.0 + ], + [ + -0.07215, + 0.29857, + 0.00552 + ], + [ + -0.07215, + 0.29857, + -0.00552 + ], + [ + 0.37944, + 0.12585, + -0.00784 + ], + [ + 0.37944, + 0.12585, + 0.00784 + ] + ], + [ + [ + -0.0, + -0.0, + -0.10981 + ], + [ + -0.0, + 0.0, + -0.02475 + ], + [ + 0.0, + -0.0, + -0.00355 + ], + [ + 0.0, + -0.0, + 0.27488 + ], + [ + -0.0, + 0.0, + -0.27404 + ], + [ + 0.0, + -0.0, + -0.3185 + ], + [ + 0.29513, + 0.24012, + -0.15284 + ], + [ + -0.29513, + -0.24012, + -0.15284 + ], + [ + -0.39216, + 0.15376, + -0.14852 + ], + [ + 0.39216, + -0.15376, + -0.14852 + ] + ], + [ + [ + -0.30338, + -0.01027, + 0.0 + ], + [ + 0.12972, + 0.15827, + 0.0 + ], + [ + 0.1133, + -0.15172, + 0.0 + ], + [ + 0.13112, + 0.00249, + -0.0 + ], + [ + -0.2129, + 0.10527, + 0.0 + ], + [ + 0.34096, + -0.42998, + 0.0 + ], + [ + 0.21211, + 0.37329, + 0.01161 + ], + [ + 0.21211, + 0.37329, + -0.01161 + ], + [ + -0.09751, + -0.18332, + 0.01018 + ], + [ + -0.09751, + -0.18332, + -0.01018 + ] + ], + [ + [ + 0.01637, + -0.15249, + -0.0 + ], + [ + 0.25588, + 0.09816, + 0.0 + ], + [ + -0.26482, + 0.12899, + -0.0 + ], + [ + -0.0011, + -0.13027, + 0.0 + ], + [ + 0.02868, + 0.06975, + -0.0 + ], + [ + -0.42225, + 0.31167, + 0.0 + ], + [ + 0.32881, + 0.29587, + 0.01636 + ], + [ + 0.32881, + 0.29587, + -0.01636 + ], + [ + -0.20217, + 0.14639, + -0.00576 + ], + [ + -0.20217, + 0.14639, + 0.00576 + ] + ], + [ + [ + 0.0, + -0.0, + 0.00887 + ], + [ + 0.0, + 0.0, + -0.09871 + ], + [ + -0.0, + 0.0, + 0.09053 + ], + [ + 0.0, + -0.0, + -0.00868 + ], + [ + 0.0, + 0.0, + 0.25154 + ], + [ + -0.0, + 0.0, + -0.22614 + ], + [ + -0.40951, + -0.21673, + 0.12035 + ], + [ + 0.40951, + 0.21673, + 0.12035 + ], + [ + -0.38405, + 0.21559, + -0.10303 + ], + [ + 0.38405, + -0.21559, + -0.10303 + ] + ], + [ + [ + -0.02543, + 0.00344, + -0.0 + ], + [ + 0.04893, + 0.13177, + -0.0 + ], + [ + 0.00883, + -0.13705, + 0.0 + ], + [ + -0.10674, + -0.00362, + 0.0 + ], + [ + 0.56453, + 0.21566, + 0.0 + ], + [ + -0.31827, + 0.27153, + 0.0 + ], + [ + -0.03713, + -0.17876, + -0.03584 + ], + [ + -0.03713, + -0.17876, + 0.03584 + ], + [ + 0.40768, + -0.03918, + -0.04678 + ], + [ + 0.40768, + -0.03918, + 0.04678 + ] + ], + [ + [ + 0.00231, + 0.10928, + 0.0 + ], + [ + 0.05685, + -0.13378, + 0.0 + ], + [ + -0.0474, + -0.11294, + 0.0 + ], + [ + -0.01233, + 0.04506, + -0.0 + ], + [ + -0.52142, + -0.21973, + -0.0 + ], + [ + -0.35028, + 0.26893, + -0.0 + ], + [ + 0.12207, + 0.30561, + 0.08598 + ], + [ + 0.12207, + 0.30561, + -0.08598 + ], + [ + 0.31262, + 0.00395, + -0.06195 + ], + [ + 0.31262, + 0.00395, + 0.06195 + ] + ], + [ + [ + 0.0, + 0.0, + -0.03972 + ], + [ + 0.0, + -0.0, + -0.12919 + ], + [ + -0.0, + -0.0, + -0.13327 + ], + [ + -0.0, + 0.0, + 0.23053 + ], + [ + -0.0, + -0.0, + 0.30264 + ], + [ + -0.0, + 0.0, + 0.29357 + ], + [ + -0.38597, + -0.13219, + 0.10483 + ], + [ + 0.38597, + 0.13219, + 0.10483 + ], + [ + 0.32467, + -0.27049, + 0.10253 + ], + [ + -0.32467, + 0.27049, + 0.10253 + ] + ], + [ + [ + -0.05861, + 0.00441, + 0.0 + ], + [ + -0.09528, + 0.03471, + -0.0 + ], + [ + -0.1014, + -0.05875, + -0.0 + ], + [ + 0.35947, + 0.01218, + 0.0 + ], + [ + -0.05156, + 0.02043, + -0.0 + ], + [ + -0.48655, + 0.41366, + 0.0 + ], + [ + -0.1898, + -0.35118, + -0.05827 + ], + [ + -0.1898, + -0.35118, + 0.05827 + ], + [ + -0.04587, + 0.16973, + -0.14986 + ], + [ + -0.04587, + 0.16973, + 0.14986 + ] + ], + [ + [ + -0.00439, + -0.00481, + 0.0 + ], + [ + 0.07082, + 0.03751, + -0.0 + ], + [ + -0.09921, + 0.06613, + -0.0 + ], + [ + 0.03222, + -0.00465, + -0.0 + ], + [ + -0.29571, + -0.02474, + 0.0 + ], + [ + 0.18936, + -0.28673, + 0.0 + ], + [ + -0.30023, + -0.18173, + 0.17634 + ], + [ + -0.30023, + -0.18173, + -0.17634 + ], + [ + 0.36539, + -0.21413, + 0.22901 + ], + [ + 0.36539, + -0.21413, + -0.22901 + ] + ], + [ + [ + -0.00779, + 0.00576, + 0.0 + ], + [ + -0.11716, + -0.03627, + -0.0 + ], + [ + -0.09425, + 0.04279, + -0.0 + ], + [ + 0.0643, + 0.00246, + -0.0 + ], + [ + 0.3148, + 0.03143, + 0.0 + ], + [ + 0.12276, + -0.2196, + 0.0 + ], + [ + 0.40876, + 0.12013, + -0.29765 + ], + [ + 0.40876, + 0.12013, + 0.29765 + ], + [ + 0.31078, + -0.12524, + 0.14469 + ], + [ + 0.31078, + -0.12524, + -0.14469 + ] + ], + [ + [ + -0.00225, + 0.02567, + 0.0 + ], + [ + 0.00032, + 0.01345, + 0.0 + ], + [ + 0.05318, + 0.02485, + -0.0 + ], + [ + -0.0044, + -0.01066, + -0.0 + ], + [ + -0.12087, + -0.0107, + -0.0 + ], + [ + -0.25162, + 0.38711, + 0.0 + ], + [ + 0.09384, + -0.09757, + -0.09518 + ], + [ + 0.09384, + -0.09757, + 0.09518 + ], + [ + -0.18232, + -0.45896, + 0.33551 + ], + [ + -0.18232, + -0.45896, + -0.33551 + ] + ], + [ + [ + 0.0, + 0.0, + -0.00184 + ], + [ + 0.0, + 0.0, + 0.03665 + ], + [ + 0.0, + -0.0, + -0.04916 + ], + [ + -0.0, + -0.0, + -0.00354 + ], + [ + -0.0, + -0.0, + -0.41631 + ], + [ + 0.0, + -0.0, + 0.61037 + ], + [ + -0.02964, + -0.25889, + -0.03198 + ], + [ + 0.02964, + 0.25889, + -0.03198 + ], + [ + -0.36575, + -0.14298, + 0.04512 + ], + [ + 0.36575, + 0.14298, + 0.04512 + ] + ], + [ + [ + 0.0084, + 0.00642, + -0.0 + ], + [ + 0.0268, + 0.06144, + 0.0 + ], + [ + 0.0037, + -0.01404, + 0.0 + ], + [ + -0.05267, + -0.0022, + 0.0 + ], + [ + -0.53658, + -0.04001, + -0.0 + ], + [ + 0.07425, + -0.09481, + -0.0 + ], + [ + 0.27006, + -0.38888, + -0.29869 + ], + [ + 0.27006, + -0.38888, + 0.29869 + ], + [ + 0.02654, + 0.13597, + -0.1078 + ], + [ + 0.02654, + 0.13597, + 0.1078 + ] + ], + [ + [ + -0.0, + -0.0, + -0.00538 + ], + [ + -0.0, + -0.0, + 0.03728 + ], + [ + -0.0, + 0.0, + 0.02593 + ], + [ + 0.0, + 0.0, + 0.03713 + ], + [ + 0.0, + 0.0, + -0.58904 + ], + [ + -0.0, + 0.0, + -0.39737 + ], + [ + -0.09009, + -0.4006, + -0.03534 + ], + [ + 0.09009, + 0.4006, + -0.03534 + ], + [ + 0.26176, + 0.08217, + -0.02664 + ], + [ + -0.26176, + -0.08217, + -0.02664 + ] + ], + [ + [ + 0.01356, + -0.4884, + 0.0 + ], + [ + 0.004, + -0.04364, + 0.0 + ], + [ + 0.00794, + -0.04548, + -0.0 + ], + [ + -0.02486, + 0.74626, + -0.0 + ], + [ + -0.2215, + -0.07131, + -0.0 + ], + [ + -0.15757, + 0.20068, + 0.0 + ], + [ + 0.07178, + 0.02997, + -0.03159 + ], + [ + 0.07178, + 0.02997, + 0.03159 + ], + [ + 0.08715, + -0.13378, + 0.08768 + ], + [ + 0.08715, + -0.13378, + -0.08768 + ] + ], + [ + [ + -0.0002, + -0.00069, + 0.0 + ], + [ + -0.00495, + -0.00297, + 0.0 + ], + [ + -0.0318, + 0.04186, + -0.0 + ], + [ + 0.00191, + 0.00044, + -0.0 + ], + [ + -0.01165, + 0.0692, + -0.0 + ], + [ + 0.30746, + 0.25797, + 0.0 + ], + [ + 0.03293, + -0.0169, + 0.05137 + ], + [ + 0.03293, + -0.0169, + -0.05137 + ], + [ + 0.02841, + -0.37552, + -0.51939 + ], + [ + 0.02841, + -0.37552, + 0.51939 + ] + ], + [ + [ + 0.00012, + -0.00042, + 0.0 + ], + [ + 0.04679, + 0.01958, + 0.0 + ], + [ + -0.00371, + 0.00491, + 0.0 + ], + [ + -0.00149, + -0.00064, + 0.0 + ], + [ + 0.09064, + -0.52493, + 0.0 + ], + [ + 0.03743, + 0.02953, + -0.0 + ], + [ + -0.31537, + 0.15136, + -0.47757 + ], + [ + -0.31537, + 0.15136, + 0.47757 + ], + [ + 0.00263, + -0.04245, + -0.05854 + ], + [ + 0.00263, + -0.04245, + 0.05854 + ] + ], + [ + [ + -0.0, + 0.0, + 0.00024 + ], + [ + -0.0, + -0.0, + -0.00123 + ], + [ + -0.0, + -0.0, + 0.09178 + ], + [ + 0.0, + -0.0, + 0.00054 + ], + [ + -0.0, + 0.0, + 0.00043 + ], + [ + 0.0, + 0.0, + 0.01295 + ], + [ + 0.00389, + -0.00117, + 0.00643 + ], + [ + -0.00389, + 0.00117, + 0.00643 + ], + [ + 0.03485, + -0.42824, + -0.55771 + ], + [ + -0.03485, + 0.42824, + -0.55771 + ] + ], + [ + [ + -0.0, + -0.0, + 0.00025 + ], + [ + 0.0, + -0.0, + -0.09206 + ], + [ + 0.0, + 0.0, + -0.00116 + ], + [ + 0.0, + 0.0, + -0.00087 + ], + [ + -0.0, + 0.0, + -0.0121 + ], + [ + -0.0, + -0.0, + -7e-05 + ], + [ + 0.38866, + -0.17999, + 0.55873 + ], + [ + -0.38866, + 0.17999, + 0.55873 + ], + [ + -0.00119, + 0.00461, + 0.00598 + ], + [ + 0.00119, + -0.00461, + 0.00598 + ] + ], + [ + [ + 0.00033, + -0.00036, + 0.0 + ], + [ + -0.04367, + 0.08379, + -0.0 + ], + [ + -0.00391, + -0.00472, + 0.0 + ], + [ + -0.00183, + 0.00073, + -0.0 + ], + [ + 0.13433, + -0.82891, + -0.0 + ], + [ + 0.0499, + 0.04004, + 0.0 + ], + [ + 0.19923, + -0.08421, + 0.30662 + ], + [ + 0.19923, + -0.08421, + -0.30662 + ], + [ + 0.00035, + 0.00605, + 0.00808 + ], + [ + 0.00035, + 0.00605, + -0.00808 + ] + ], + [ + [ + 0.00018, + 0.00109, + -0.0 + ], + [ + 0.00303, + -0.00518, + 0.0 + ], + [ + -0.05688, + -0.07396, + -0.0 + ], + [ + -0.00014, + -0.00276, + 0.0 + ], + [ + -0.00695, + 0.05536, + 0.0 + ], + [ + 0.70907, + 0.57724, + -0.0 + ], + [ + -0.01273, + 0.00553, + -0.0183 + ], + [ + -0.01273, + 0.00553, + 0.0183 + ], + [ + -0.01808, + 0.15752, + 0.22453 + ], + [ + -0.01808, + 0.15752, + -0.22453 + ] + ] + ], + "reduced_masses": [ + 1.073, + 2.89, + 4.538, + 4.529, + 4.193, + 3.408, + 7.394, + 1.055, + 2.18, + 2.027, + 3.434, + 3.328, + 1.207, + 1.568, + 1.609, + 1.995, + 2.747, + 1.247, + 1.338, + 1.059, + 1.05, + 1.092, + 1.046, + 10.766, + 1.039, + 1.037, + 1.101, + 1.101, + 1.107, + 1.104 + ], + "energies": { + "zpve": 0.0807347, + "scf": -193.0049629, + "total": -192.9242282 + } + }, + "run": { + "@module": "turbomoleio.output.data", + "@class": "RunData", + "@version": "1.3.0", + "host": "frontal3", + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:18:05.960000" + }, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:18:18.200000" + }, + "cpu_time": 9.86, + "wall_time": 12.3 + }, + "tm": { + "@module": "turbomoleio.output.data", + "@class": "TurbomoleData", + "@version": "1.3.0", + "version": "7.6", + "build": null, + "executable": "force" + } +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/aoforce/aceton_full/ref_parser.json b/turbomoleio/testfiles/outputs/TM_v7.6/aoforce/aceton_full/ref_parser.json new file mode 100644 index 0000000..196dc21 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/aoforce/aceton_full/ref_parser.json @@ -0,0 +1,2181 @@ +{ + "all_done": true, + "header": { + "executable": "force", + "host": "frontal3", + "tm_version": "7.6", + "tm_build": null, + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:18:05.960000" + } + }, + "centers": { + "center_of_mass": [ + 0.00543831, + -1.01535818, + 0.0 + ], + "center_of_charge": [ + 0.00482639, + -0.8580092, + 0.0 + ] + }, + "coordinates": { + "coords": [ + [ + 0.05814498, + -3.50738391, + 0.0 + ], + [ + 2.43488579, + 0.35436813, + 0.0 + ], + [ + -2.48030013, + 0.26702469, + 0.0 + ], + [ + -0.00509977, + -1.20231423, + 0.0 + ], + [ + 2.11408643, + 2.42830913, + 0.0 + ], + [ + -4.10640229, + -1.05476626, + 0.0 + ], + [ + 3.57887083, + -0.16668276, + 1.68562205 + ], + [ + 3.57887083, + -0.16668276, + -1.68562205 + ], + [ + -2.58652834, + 1.52406399, + 1.68701865 + ], + [ + -2.58652834, + 1.52406399, + -1.68701865 + ] + ], + "species": [ + "o", + "c", + "c", + "c", + "h", + "h", + "h", + "h", + "h", + "h" + ], + "charges": [ + 8.0, + 6.0, + 6.0, + 6.0, + 1.0, + 1.0, + 1.0, + 1.0, + 1.0, + 1.0 + ], + "isotopes": [ + 0, + 0, + 0, + 0, + 0, + 0, + 0, + 0, + 0, + 0 + ] + }, + "basis": { + "basis_per_specie": { + "o": "def-SV(P)", + "c": "def-SV(P)", + "h": "def-SV(P)" + }, + "aux_basis_per_specie": {}, + "number_scf_basis_func": 68, + "number_scf_aux_basis_func": null + }, + "symmetry": { + "symbol": "cs", + "n_reps": 2, + "reps": [ + "a'", + "a\"" + ] + }, + "cosmo_header": null, + "density_functional_data": { + "functional_msg": "B-P86 functional\n exchange: LDA + Becke (B88)\n correlation: LDA (VWN) + Perdew (P86)", + "functional_name": "b-p", + "functional_type": "GGA", + "xcfun": null, + "spherical_gridsize": 3, + "gridpoints": 302 + }, + "rij_info": null, + "dftd": null, + "pre_scf_run": null, + "scf_iterations": null, + "scf_energies": null, + "cosmo_results": null, + "electrostatic_moments": null, + "timings": { + "cpu_time": 9.86, + "wall_time": 12.3, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:18:18.200000" + } + }, + "s2": null, + "is_uhf": false, + "fermi": null, + "integral": { + "integral_neglect_threshold": 1e-10, + "thize": 1e-05, + "thime": 5 + }, + "pre_escf_run": { + "calc_type": null, + "residuum_convergence_criterium": null, + "n_occupied_orbitals": 16, + "orbital_characterization": "scfconv=8", + "max_davidson_iter": null, + "machine_precision": 2.220446049250313e-16, + "max_core_mem": 500.0, + "max_cao_basis_vectors": 12082, + "max_treated_vectors": 24, + "irrep_data": null + }, + "escf_iterations": { + "steps": [ + [ + [ + "a'", + 0, + 0.06477864201546545 + ], + [ + "a\"", + 0, + 0.02101071400167658 + ] + ], + [ + [ + "a'", + 0, + 0.003108084414748305 + ], + [ + "a\"", + 0, + 0.002142588191202605 + ] + ], + [ + [ + "a'", + 0, + 0.000149354224924067 + ], + [ + "a\"", + 0, + 0.0001131083813417664 + ] + ], + [ + [ + "a'", + 15, + 3.352126044199397e-06 + ], + [ + "a\"", + 9, + 1.725170449884324e-06 + ] + ] + ], + "converged": true + }, + "escf_gs_total_en": null, + "escf_excitations": null, + "rdgrad_memory": null, + "gradient": null, + "egrad_excited_state": null, + "statpt_info": null, + "relax_info": null, + "relax_gradient_values": null, + "relax_conv_info": null, + "aoforce_numerical_integration": { + "memory": { + "core_memory_dft": 497, + "memory_per_atom": 61, + "atoms_per_loop": 10 + }, + "construction_timings": [ + [ + " first deriv. of -> Dip. deriv.", + 0.0, + 0.0 + ], + [ + " first deriv. of \n -> RHS\n second deriv. of -> Hessian\n -> Hessian\n nucl. rep. -> Hessian", + 0.04, + 0.06 + ], + [ + " second deriv. of 2e energy -> Hessian\n treating Coulomb (and exchange) contribution", + 1.78, + 1.78 + ], + [ + " second deriv. of 2e energy -> Hessian\n treating exchange-correlation contribution", + 2.06, + 2.06 + ], + [ + "", + 0.0, + 0.02 + ], + [ + " *S(i,j)xi -> Dip. deriv.", + 0.0, + 0.01 + ], + [ + " epsilon(i)*S(i,j)xi*S(i,j)chi -> Hessian", + 0.0, + 0.01 + ], + [ + " G(a,i)[S(k,l)xi] -> RHS\n G(i,j)[S(k,l)xi]*S(i,j)chi -> Hessian", + 0.99, + 1.11 + ], + [ + " G(mu,nu)[D(kap,lam)]xi", + 1.58, + 1.62 + ], + [ + " F(a,i)xi -> RHS\n F(i,j)xi*S(i,j)chi -> Hessian", + 0.0, + 0.03 + ], + [ + " epsilon(i)*S(a,i)xi -> RHS", + 0.0, + 0.03 + ], + [ + " *U(a,i)xi -> Dip. deriv.", + 0.0, + 0.03 + ], + [ + " RHS(a,i)xi*U(a,i)chi -> Hessian", + 0.0, + 0.02 + ] + ] + }, + "aoforce_analysis": { + "rotational": { + "dipole_moment": [ + 0.0205132454, + 1.0230185698, + 0.0 + ], + "b": [ + 0.3345568942, + 0.276870323, + 0.1607738674 + ], + "intensities": [ + 0.0004207932, + 1.0465669942, + 0.0 + ], + "m": [ + [ + 0.9999983143, + 0.0018361363, + 0.0 + ], + [ + -0.0018361363, + 0.9999983143, + 0.0 + ], + [ + 0.0, + 0.0, + 1.0 + ] + ] + }, + "vibrational": { + "frequencies": [ + -113.75, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 157.28, + 372.62, + 482.93, + 510.25, + 764.5, + 847.27, + 883.74, + 1033.97, + 1070.1, + 1191.2, + 1325.01, + 1326.94, + 1395.67, + 1411.52, + 1415.09, + 1417.77, + 1771.88, + 2935.92, + 2950.81, + 3011.16, + 3036.78, + 3053.95, + 3072.08 + ], + "symmetries": [ + "a\"", + null, + null, + null, + null, + null, + "a\"", + "a'", + "a\"", + "a'", + "a'", + null, + "a\"", + "a'", + "a'", + "a\"", + "a'", + "a'", + "a'", + "a'", + "a\"", + "a'", + "a\"", + "a'", + "a'", + "a'", + "a\"", + "a\"", + "a'", + "a'" + ], + "ir": [ + true, + null, + null, + null, + null, + null, + null, + true, + true, + true, + true, + true, + true, + true, + true, + true, + true, + true, + true, + true, + true, + true, + true, + true, + true, + true, + true, + true, + true, + true + ], + "dDIP_dQ": [ + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0006, + 0.001, + 0.0002, + 0.0026, + 0.0011, + 0.0004, + 0.0025, + 0.0009, + 0.0022, + 0.0073, + 0.0028, + 0.0063, + 0.0033, + 0.001, + 0.0016, + 0.0032, + 0.0095, + 0.001, + 0.0012, + 0.0017, + 0.001, + 0.0026, + 0.0021 + ], + "intensities": [ + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.56, + 1.62, + 0.09, + 11.66, + 2.13, + 0.29, + 10.77, + 1.31, + 8.93, + 93.89, + 14.38, + 71.48, + 18.88, + 1.68, + 4.3, + 18.37, + 160.09, + 1.72, + 2.54, + 5.02, + 1.91, + 12.26, + 7.71 + ], + "intensities_perc": [ + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.35, + 1.01, + 0.06, + 7.28, + 1.33, + 0.18, + 6.73, + 0.82, + 5.58, + 58.65, + 8.98, + 44.65, + 11.79, + 1.05, + 2.69, + 11.48, + 100.0, + 1.07, + 1.59, + 3.14, + 1.2, + 7.66, + 4.81 + ], + "raman": [ + true, + null, + null, + null, + null, + null, + null, + true, + true, + true, + true, + true, + true, + true, + true, + true, + true, + true, + true, + true, + true, + true, + true, + true, + true, + true, + true, + true, + true, + true + ], + "eigenvectors": [ + [ + [ + 0.0, + 0.0, + 0.0492 + ], + [ + 0.0, + -0.0, + -0.00463 + ], + [ + 0.0, + 0.0, + -0.04844 + ], + [ + 0.0, + 0.0, + 0.01476 + ], + [ + 0.0, + -0.0, + 0.49283 + ], + [ + 0.0, + -0.0, + -0.176 + ], + [ + 0.28911, + -0.39613, + -0.32814 + ], + [ + -0.28911, + 0.39613, + -0.32814 + ], + [ + -0.07583, + -0.0811, + 0.00756 + ], + [ + 0.07583, + 0.0811, + 0.00756 + ] + ], + [ + [ + 0.00267, + -0.00381, + -0.10381 + ], + [ + 0.00701, + -0.00648, + 0.05039 + ], + [ + 0.00691, + -0.00095, + 0.38141 + ], + [ + 0.00526, + -0.00374, + 0.0902 + ], + [ + 0.00934, + -0.00612, + 0.2431 + ], + [ + 0.00543, + 0.00088, + 0.38454 + ], + [ + 0.12241, + -0.14646, + -0.0712 + ], + [ + -0.10956, + 0.13092, + -0.0712 + ], + [ + 0.12441, + -0.13964, + 0.49214 + ], + [ + -0.10775, + 0.13797, + 0.49214 + ] + ], + [ + [ + 0.35621, + 0.03777, + -0.02338 + ], + [ + -0.01248, + 0.26468, + 0.11331 + ], + [ + -0.00414, + -0.20458, + -0.02079 + ], + [ + 0.13614, + 0.03173, + 0.01828 + ], + [ + -0.21048, + 0.23406, + 0.14368 + ], + [ + 0.12205, + -0.35983, + -0.08947 + ], + [ + -0.00816, + 0.34219, + 0.13434 + ], + [ + 0.08269, + 0.40561, + 0.13434 + ], + [ + -0.16961, + -0.24646, + 0.0 + ], + [ + -0.07869, + -0.18298, + 0.0 + ] + ], + [ + [ + 0.08763, + -0.12501, + 0.17167 + ], + [ + 0.23021, + -0.21276, + 0.19089 + ], + [ + 0.22699, + -0.03128, + 0.004 + ], + [ + 0.17274, + -0.12267, + 0.12631 + ], + [ + 0.30679, + -0.20091, + 0.13995 + ], + [ + 0.17819, + 0.02876, + -0.03374 + ], + [ + 0.14633, + -0.2236, + 0.24447 + ], + [ + 0.27562, + -0.2864, + 0.24447 + ], + [ + 0.2087, + 0.00407, + -0.02349 + ], + [ + 0.3381, + -0.05879, + -0.02349 + ] + ], + [ + [ + -0.03439, + 0.20845, + -0.08436 + ], + [ + 0.10132, + 0.12492, + 0.21333 + ], + [ + 0.09825, + 0.29765, + -0.05039 + ], + [ + 0.04661, + 0.21067, + 0.01499 + ], + [ + 0.1742, + 0.13619, + 0.28877 + ], + [ + 0.0518, + 0.3548, + -0.19524 + ], + [ + -0.0061, + 0.00962, + 0.25059 + ], + [ + 0.17212, + 0.15982, + 0.25059 + ], + [ + 0.05325, + 0.22623, + -0.0 + ], + [ + 0.23161, + 0.37655, + 0.0 + ] + ], + [ + [ + 0.11162, + 0.06509, + 0.02308 + ], + [ + 0.14993, + 0.04151, + -0.33119 + ], + [ + 0.14906, + 0.09027, + 0.04812 + ], + [ + 0.13449, + 0.06571, + -0.0752 + ], + [ + 0.1705, + 0.04469, + -0.39945 + ], + [ + 0.13595, + 0.10639, + 0.23143 + ], + [ + 0.2735, + 0.10557, + -0.39525 + ], + [ + 0.01602, + -0.04523, + -0.39525 + ], + [ + 0.29038, + 0.16678, + 0.0 + ], + [ + 0.03269, + 0.01586, + 0.0 + ] + ], + [ + [ + -0.03882, + 0.11693, + 0.54065 + ], + [ + -0.10279, + 0.1563, + 0.0071 + ], + [ + -0.10135, + 0.07488, + 0.15 + ], + [ + -0.077, + 0.11588, + 0.26205 + ], + [ + -0.13715, + 0.15099, + -0.23645 + ], + [ + -0.07945, + 0.04794, + 0.35448 + ], + [ + -0.0488, + 0.38022, + 0.03967 + ], + [ + -0.13952, + -0.02972, + 0.03967 + ], + [ + -0.07677, + 0.27826, + -0.0 + ], + [ + -0.16757, + -0.13202, + 0.0 + ] + ], + [ + [ + 0.0, + -0.0, + -0.04194 + ], + [ + -0.0, + 0.0, + 0.03831 + ], + [ + 0.0, + -0.0, + 0.00319 + ], + [ + 0.0, + -0.0, + 0.01891 + ], + [ + -0.0, + -0.0, + 0.17736 + ], + [ + 0.0, + -0.0, + 0.48883 + ], + [ + 0.05396, + -0.10868, + -0.03246 + ], + [ + -0.05396, + 0.10868, + -0.03246 + ], + [ + 0.18565, + 0.45313, + -0.32776 + ], + [ + -0.18565, + -0.45313, + -0.32776 + ] + ], + [ + [ + -0.00202, + -0.13173, + 0.0 + ], + [ + -0.15353, + 0.10217, + -0.0 + ], + [ + 0.1513, + 0.09522, + -0.0 + ], + [ + 0.00089, + -0.12991, + -0.0 + ], + [ + -0.48067, + 0.05041, + 0.0 + ], + [ + -0.08593, + 0.38771, + -0.0 + ], + [ + -0.07215, + 0.29857, + 0.00552 + ], + [ + -0.07215, + 0.29857, + -0.00552 + ], + [ + 0.37944, + 0.12585, + -0.00784 + ], + [ + 0.37944, + 0.12585, + 0.00784 + ] + ], + [ + [ + -0.0, + -0.0, + -0.10981 + ], + [ + -0.0, + 0.0, + -0.02475 + ], + [ + 0.0, + -0.0, + -0.00355 + ], + [ + 0.0, + -0.0, + 0.27488 + ], + [ + -0.0, + 0.0, + -0.27404 + ], + [ + 0.0, + -0.0, + -0.3185 + ], + [ + 0.29513, + 0.24012, + -0.15284 + ], + [ + -0.29513, + -0.24012, + -0.15284 + ], + [ + -0.39216, + 0.15376, + -0.14852 + ], + [ + 0.39216, + -0.15376, + -0.14852 + ] + ], + [ + [ + -0.30338, + -0.01027, + 0.0 + ], + [ + 0.12972, + 0.15827, + 0.0 + ], + [ + 0.1133, + -0.15172, + 0.0 + ], + [ + 0.13112, + 0.00249, + -0.0 + ], + [ + -0.2129, + 0.10527, + 0.0 + ], + [ + 0.34096, + -0.42998, + 0.0 + ], + [ + 0.21211, + 0.37329, + 0.01161 + ], + [ + 0.21211, + 0.37329, + -0.01161 + ], + [ + -0.09751, + -0.18332, + 0.01018 + ], + [ + -0.09751, + -0.18332, + -0.01018 + ] + ], + [ + [ + 0.01637, + -0.15249, + -0.0 + ], + [ + 0.25588, + 0.09816, + 0.0 + ], + [ + -0.26482, + 0.12899, + -0.0 + ], + [ + -0.0011, + -0.13027, + 0.0 + ], + [ + 0.02868, + 0.06975, + -0.0 + ], + [ + -0.42225, + 0.31167, + 0.0 + ], + [ + 0.32881, + 0.29587, + 0.01636 + ], + [ + 0.32881, + 0.29587, + -0.01636 + ], + [ + -0.20217, + 0.14639, + -0.00576 + ], + [ + -0.20217, + 0.14639, + 0.00576 + ] + ], + [ + [ + 0.0, + -0.0, + 0.00887 + ], + [ + 0.0, + 0.0, + -0.09871 + ], + [ + -0.0, + 0.0, + 0.09053 + ], + [ + 0.0, + -0.0, + -0.00868 + ], + [ + 0.0, + 0.0, + 0.25154 + ], + [ + -0.0, + 0.0, + -0.22614 + ], + [ + -0.40951, + -0.21673, + 0.12035 + ], + [ + 0.40951, + 0.21673, + 0.12035 + ], + [ + -0.38405, + 0.21559, + -0.10303 + ], + [ + 0.38405, + -0.21559, + -0.10303 + ] + ], + [ + [ + -0.02543, + 0.00344, + -0.0 + ], + [ + 0.04893, + 0.13177, + -0.0 + ], + [ + 0.00883, + -0.13705, + 0.0 + ], + [ + -0.10674, + -0.00362, + 0.0 + ], + [ + 0.56453, + 0.21566, + 0.0 + ], + [ + -0.31827, + 0.27153, + 0.0 + ], + [ + -0.03713, + -0.17876, + -0.03584 + ], + [ + -0.03713, + -0.17876, + 0.03584 + ], + [ + 0.40768, + -0.03918, + -0.04678 + ], + [ + 0.40768, + -0.03918, + 0.04678 + ] + ], + [ + [ + 0.00231, + 0.10928, + 0.0 + ], + [ + 0.05685, + -0.13378, + 0.0 + ], + [ + -0.0474, + -0.11294, + 0.0 + ], + [ + -0.01233, + 0.04506, + -0.0 + ], + [ + -0.52142, + -0.21973, + -0.0 + ], + [ + -0.35028, + 0.26893, + -0.0 + ], + [ + 0.12207, + 0.30561, + 0.08598 + ], + [ + 0.12207, + 0.30561, + -0.08598 + ], + [ + 0.31262, + 0.00395, + -0.06195 + ], + [ + 0.31262, + 0.00395, + 0.06195 + ] + ], + [ + [ + 0.0, + 0.0, + -0.03972 + ], + [ + 0.0, + -0.0, + -0.12919 + ], + [ + -0.0, + -0.0, + -0.13327 + ], + [ + -0.0, + 0.0, + 0.23053 + ], + [ + -0.0, + -0.0, + 0.30264 + ], + [ + -0.0, + 0.0, + 0.29357 + ], + [ + -0.38597, + -0.13219, + 0.10483 + ], + [ + 0.38597, + 0.13219, + 0.10483 + ], + [ + 0.32467, + -0.27049, + 0.10253 + ], + [ + -0.32467, + 0.27049, + 0.10253 + ] + ], + [ + [ + -0.05861, + 0.00441, + 0.0 + ], + [ + -0.09528, + 0.03471, + -0.0 + ], + [ + -0.1014, + -0.05875, + -0.0 + ], + [ + 0.35947, + 0.01218, + 0.0 + ], + [ + -0.05156, + 0.02043, + -0.0 + ], + [ + -0.48655, + 0.41366, + 0.0 + ], + [ + -0.1898, + -0.35118, + -0.05827 + ], + [ + -0.1898, + -0.35118, + 0.05827 + ], + [ + -0.04587, + 0.16973, + -0.14986 + ], + [ + -0.04587, + 0.16973, + 0.14986 + ] + ], + [ + [ + -0.00439, + -0.00481, + 0.0 + ], + [ + 0.07082, + 0.03751, + -0.0 + ], + [ + -0.09921, + 0.06613, + -0.0 + ], + [ + 0.03222, + -0.00465, + -0.0 + ], + [ + -0.29571, + -0.02474, + 0.0 + ], + [ + 0.18936, + -0.28673, + 0.0 + ], + [ + -0.30023, + -0.18173, + 0.17634 + ], + [ + -0.30023, + -0.18173, + -0.17634 + ], + [ + 0.36539, + -0.21413, + 0.22901 + ], + [ + 0.36539, + -0.21413, + -0.22901 + ] + ], + [ + [ + -0.00779, + 0.00576, + 0.0 + ], + [ + -0.11716, + -0.03627, + -0.0 + ], + [ + -0.09425, + 0.04279, + -0.0 + ], + [ + 0.0643, + 0.00246, + -0.0 + ], + [ + 0.3148, + 0.03143, + 0.0 + ], + [ + 0.12276, + -0.2196, + 0.0 + ], + [ + 0.40876, + 0.12013, + -0.29765 + ], + [ + 0.40876, + 0.12013, + 0.29765 + ], + [ + 0.31078, + -0.12524, + 0.14469 + ], + [ + 0.31078, + -0.12524, + -0.14469 + ] + ], + [ + [ + -0.00225, + 0.02567, + 0.0 + ], + [ + 0.00032, + 0.01345, + 0.0 + ], + [ + 0.05318, + 0.02485, + -0.0 + ], + [ + -0.0044, + -0.01066, + -0.0 + ], + [ + -0.12087, + -0.0107, + -0.0 + ], + [ + -0.25162, + 0.38711, + 0.0 + ], + [ + 0.09384, + -0.09757, + -0.09518 + ], + [ + 0.09384, + -0.09757, + 0.09518 + ], + [ + -0.18232, + -0.45896, + 0.33551 + ], + [ + -0.18232, + -0.45896, + -0.33551 + ] + ], + [ + [ + 0.0, + 0.0, + -0.00184 + ], + [ + 0.0, + 0.0, + 0.03665 + ], + [ + 0.0, + -0.0, + -0.04916 + ], + [ + -0.0, + -0.0, + -0.00354 + ], + [ + -0.0, + -0.0, + -0.41631 + ], + [ + 0.0, + -0.0, + 0.61037 + ], + [ + -0.02964, + -0.25889, + -0.03198 + ], + [ + 0.02964, + 0.25889, + -0.03198 + ], + [ + -0.36575, + -0.14298, + 0.04512 + ], + [ + 0.36575, + 0.14298, + 0.04512 + ] + ], + [ + [ + 0.0084, + 0.00642, + -0.0 + ], + [ + 0.0268, + 0.06144, + 0.0 + ], + [ + 0.0037, + -0.01404, + 0.0 + ], + [ + -0.05267, + -0.0022, + 0.0 + ], + [ + -0.53658, + -0.04001, + -0.0 + ], + [ + 0.07425, + -0.09481, + -0.0 + ], + [ + 0.27006, + -0.38888, + -0.29869 + ], + [ + 0.27006, + -0.38888, + 0.29869 + ], + [ + 0.02654, + 0.13597, + -0.1078 + ], + [ + 0.02654, + 0.13597, + 0.1078 + ] + ], + [ + [ + -0.0, + -0.0, + -0.00538 + ], + [ + -0.0, + -0.0, + 0.03728 + ], + [ + -0.0, + 0.0, + 0.02593 + ], + [ + 0.0, + 0.0, + 0.03713 + ], + [ + 0.0, + 0.0, + -0.58904 + ], + [ + -0.0, + 0.0, + -0.39737 + ], + [ + -0.09009, + -0.4006, + -0.03534 + ], + [ + 0.09009, + 0.4006, + -0.03534 + ], + [ + 0.26176, + 0.08217, + -0.02664 + ], + [ + -0.26176, + -0.08217, + -0.02664 + ] + ], + [ + [ + 0.01356, + -0.4884, + 0.0 + ], + [ + 0.004, + -0.04364, + 0.0 + ], + [ + 0.00794, + -0.04548, + -0.0 + ], + [ + -0.02486, + 0.74626, + -0.0 + ], + [ + -0.2215, + -0.07131, + -0.0 + ], + [ + -0.15757, + 0.20068, + 0.0 + ], + [ + 0.07178, + 0.02997, + -0.03159 + ], + [ + 0.07178, + 0.02997, + 0.03159 + ], + [ + 0.08715, + -0.13378, + 0.08768 + ], + [ + 0.08715, + -0.13378, + -0.08768 + ] + ], + [ + [ + -0.0002, + -0.00069, + 0.0 + ], + [ + -0.00495, + -0.00297, + 0.0 + ], + [ + -0.0318, + 0.04186, + -0.0 + ], + [ + 0.00191, + 0.00044, + -0.0 + ], + [ + -0.01165, + 0.0692, + -0.0 + ], + [ + 0.30746, + 0.25797, + 0.0 + ], + [ + 0.03293, + -0.0169, + 0.05137 + ], + [ + 0.03293, + -0.0169, + -0.05137 + ], + [ + 0.02841, + -0.37552, + -0.51939 + ], + [ + 0.02841, + -0.37552, + 0.51939 + ] + ], + [ + [ + 0.00012, + -0.00042, + 0.0 + ], + [ + 0.04679, + 0.01958, + 0.0 + ], + [ + -0.00371, + 0.00491, + 0.0 + ], + [ + -0.00149, + -0.00064, + 0.0 + ], + [ + 0.09064, + -0.52493, + 0.0 + ], + [ + 0.03743, + 0.02953, + -0.0 + ], + [ + -0.31537, + 0.15136, + -0.47757 + ], + [ + -0.31537, + 0.15136, + 0.47757 + ], + [ + 0.00263, + -0.04245, + -0.05854 + ], + [ + 0.00263, + -0.04245, + 0.05854 + ] + ], + [ + [ + -0.0, + 0.0, + 0.00024 + ], + [ + -0.0, + -0.0, + -0.00123 + ], + [ + -0.0, + -0.0, + 0.09178 + ], + [ + 0.0, + -0.0, + 0.00054 + ], + [ + -0.0, + 0.0, + 0.00043 + ], + [ + 0.0, + 0.0, + 0.01295 + ], + [ + 0.00389, + -0.00117, + 0.00643 + ], + [ + -0.00389, + 0.00117, + 0.00643 + ], + [ + 0.03485, + -0.42824, + -0.55771 + ], + [ + -0.03485, + 0.42824, + -0.55771 + ] + ], + [ + [ + -0.0, + -0.0, + 0.00025 + ], + [ + 0.0, + -0.0, + -0.09206 + ], + [ + 0.0, + 0.0, + -0.00116 + ], + [ + 0.0, + 0.0, + -0.00087 + ], + [ + -0.0, + 0.0, + -0.0121 + ], + [ + -0.0, + -0.0, + -7e-05 + ], + [ + 0.38866, + -0.17999, + 0.55873 + ], + [ + -0.38866, + 0.17999, + 0.55873 + ], + [ + -0.00119, + 0.00461, + 0.00598 + ], + [ + 0.00119, + -0.00461, + 0.00598 + ] + ], + [ + [ + 0.00033, + -0.00036, + 0.0 + ], + [ + -0.04367, + 0.08379, + -0.0 + ], + [ + -0.00391, + -0.00472, + 0.0 + ], + [ + -0.00183, + 0.00073, + -0.0 + ], + [ + 0.13433, + -0.82891, + -0.0 + ], + [ + 0.0499, + 0.04004, + 0.0 + ], + [ + 0.19923, + -0.08421, + 0.30662 + ], + [ + 0.19923, + -0.08421, + -0.30662 + ], + [ + 0.00035, + 0.00605, + 0.00808 + ], + [ + 0.00035, + 0.00605, + -0.00808 + ] + ], + [ + [ + 0.00018, + 0.00109, + -0.0 + ], + [ + 0.00303, + -0.00518, + 0.0 + ], + [ + -0.05688, + -0.07396, + -0.0 + ], + [ + -0.00014, + -0.00276, + 0.0 + ], + [ + -0.00695, + 0.05536, + 0.0 + ], + [ + 0.70907, + 0.57724, + -0.0 + ], + [ + -0.01273, + 0.00553, + -0.0183 + ], + [ + -0.01273, + 0.00553, + 0.0183 + ], + [ + -0.01808, + 0.15752, + 0.22453 + ], + [ + -0.01808, + 0.15752, + -0.22453 + ] + ] + ], + "reduced_masses": [ + 1.073, + 2.89, + 4.538, + 4.529, + 4.193, + 3.408, + 7.394, + 1.055, + 2.18, + 2.027, + 3.434, + 3.328, + 1.207, + 1.568, + 1.609, + 1.995, + 2.747, + 1.247, + 1.338, + 1.059, + 1.05, + 1.092, + 1.046, + 10.766, + 1.039, + 1.037, + 1.101, + 1.101, + 1.107, + 1.104 + ], + "energies": { + "zpve": 0.0807347, + "scf": -193.0049629, + "total": -192.9242282 + } + } + }, + "mp2_results": { + "energy": null + }, + "riper_scf_energies": null, + "periodicity_data": null +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/dscf/aceton_dftd3_tzvp/dscf.log b/turbomoleio/testfiles/outputs/TM_v7.6/dscf/aceton_dftd3_tzvp/dscf.log new file mode 100644 index 0000000..d822513 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/dscf/aceton_dftd3_tzvp/dscf.log @@ -0,0 +1,422 @@ + + dscf (frontal3) : TURBOMOLE rev. V7-6 19 Oct 2021 at 10:10:11 compiled Oct 19th 2021 + Copyright (C) 2021 TURBOMOLE GmbH, Karlsruhe + + + 2023-01-25 00:18:24.476 + + + + d s c f - program + + idea & directorship : reinhart ahlrichs + program development : marco haeser + michael baer + dft version : oliver treutler + + + quantum chemistry group + universitaet karlsruhe + germany + + + + *-----------------------------------------------------------------------* + | program will use 1 thread(s) | + *-----------------------------------------------------------------------* + + + +--------------------------------------------------+ + | Atomic coordinate, charge and isotop information | + +--------------------------------------------------+ + + atomic coordinates atom charge isotop + 0.04340035 -2.43303953 0.00000000 o 8.000 0 + 2.40289845 1.33092842 0.00000000 c 6.000 0 + -2.44869437 1.25914649 0.00000000 c 6.000 0 + -0.00810063 -0.18289217 0.00000000 c 6.000 0 + 2.09020694 3.35088178 0.00000000 h 1.000 0 + -4.02779836 -0.02916167 0.00000000 h 1.000 0 + 3.51545227 0.83515949 1.64389798 h 1.000 0 + 3.51545227 0.83515949 -1.64389798 h 1.000 0 + -2.56998075 2.47145950 1.64993688 h 1.000 0 + -2.56998075 2.47145950 -1.64993688 h 1.000 0 + + center of nuclear mass : -0.00000000 -0.00000000 0.00000000 + center of nuclear charge: -0.00071328 0.15355432 0.00000000 + + ************************************************************************* + dscf + ************************************************************************* + + + + +--------------------------------------------------+ + | basis set information | + +--------------------------------------------------+ + + we will work with the 1s 3p 5d 7f 9g ... basis set + ...i.e. with spherical basis functions... + + type atoms prim cont basis + --------------------------------------------------------------------------- + o 1 34 19 def-TZVP [5s3p1d|11s6p1d] + c 3 34 19 def-TZVP [5s3p1d|11s6p1d] + h 6 8 6 def-TZVP [3s1p|5s1p] + --------------------------------------------------------------------------- + total: 10 184 112 + --------------------------------------------------------------------------- + + total number of primitive shells : 42 + total number of contracted shells : 60 + total number of cartesian basis functions : 116 + total number of SCF-basis functions : 112 + + + integral neglect threshold : 0.29E-10 + integral storage threshold THIZE : 0.10E-04 + integral storage threshold THIME : 5 + + + symmetry group of the molecule : c1 + + the group has the following generators : + c1(z) + + 1 symmetry operations found + + there are 1 real representations : a + + maximum number of shells which are related by symmetry : 1 + + + ------------------ + density functional + ------------------ + B-P86 functional + exchange: LDA + Becke (B88) + correlation: LDA (VWN) + Perdew (P86) + + iterations will be done with small grid + + spherical integration : Lebedev's spherical grid + spherical gridsize : 3 + i.e. gridpoints : 302 + value for diffuse not defined + radial integration : Chebyshev 2nd kind (scaling 3) + radial gridsize : 3 + integration cells : 10 + partition function : becke + partition sharpness : 3 + + + ------------------------ + nuclear repulsion energy : 120.594341137 + ------------------------ + + _________________________________ + | | + | DFTD3 V3.1 Rev 0 | + | S.Grimme, University Bonn | + | June 2014 | + | see standalone version | + | dftd3 -h for options | + |_________________________________| + + Please cite DFT-D3 work done with this code as: + S. Grimme, J. Antony, S. Ehrlich and H. Krieg, + J. Chem. Phys, 132 (2010), 154104. + If used with BJ-damping cite also + S. Grimme, S. Ehrlich and L. Goerigk, + J. Comput. Chem. 32 (2011), 1456-1465 + For DFT-D2 the reference is + S. Grimme, J. Comput. Chem., 27 (2006), 1787-1799 + +C6 coefficients used: + 2 C6 for element 1 +Z= 1 CN= 0.912 C6(AA)= 3.03 +Z= 1 CN= 0.000 C6(AA)= 7.59 + 5 C6 for element 6 +Z= 6 CN= 0.000 C6(AA)= 49.11 +Z= 6 CN= 0.987 C6(AA)= 43.25 +Z= 6 CN= 1.998 C6(AA)= 29.36 +Z= 6 CN= 2.999 C6(AA)= 25.78 +Z= 6 CN= 3.984 C6(AA)= 18.21 + 3 C6 for element 8 +Z= 8 CN= 0.000 C6(AA)= 15.51 +Z= 8 CN= 0.993 C6(AA)= 12.82 +Z= 8 CN= 1.989 C6(AA)= 10.37 + +# XYZ [au] R0(AA) [Ang.] CN C6(AA) C8(AA) C10(AA) [au] + 1 0.04340 -2.43304 0.00000 o 1.241 1.060 12.8 257.6 6366.9 + 2 2.40290 1.33093 0.00000 c 1.455 4.035 18.3 529.2 18748.5 + 3 -2.44869 1.25915 0.00000 c 1.455 4.035 18.3 529.2 18749.0 + 4 -0.00810 -0.18289 0.00000 c 1.455 3.019 25.6 741.5 26269.1 + 5 2.09021 3.35088 0.00000 h 1.091 0.999 3.1 37.4 553.3 + 6 -4.02780 -0.02916 0.00000 h 1.091 1.000 3.1 37.4 553.2 + 7 3.51545 0.83516 1.64390 h 1.091 1.000 3.1 37.4 553.2 + 8 3.51545 0.83516 -1.64390 h 1.091 1.000 3.1 37.4 553.2 + 9 -2.56998 2.47146 1.64994 h 1.091 0.999 3.1 37.4 553.3 + 10 -2.56998 2.47146 -1.64994 h 1.091 0.999 3.1 37.4 553.3 + +molecular C6(AA) [au] = 764.02 + + DFT-D V3 + DF b-p + parameters + s6 : 1.0000 + s8 : 1.6830 + rs6 : 1.1390 + rs18 : 1.0000 + alpha6 : 14.0000 + alpha8 : 16.0000 + k1-k3 : 16.0000 1.3333 -4.0000 + + Edisp /kcal,au: -3.1494 -0.00501893 + + E6 /kcal : -0.9162 + E8 /kcal : -2.2332 + % E8 : 70.91 + nuclear repulsion energy = 120.594341137 + DFT-D3 Energy contribution = -0.005018931 + nuclear repulsion + dispersion correction = 120.589322206 + + + ----------------- + -S,T+V- integrals + ----------------- + + 1e-integrals will be neglected if expon. factor < 0.288100E-11 + + Difference densities algorithm switched on. + The maximal number of linear combinations of + difference densities is 20 . + + DIIS switched on: error vector is FDS-SDF + Max. Iterations for DIIS is : 4 + DIIS matrix (see manual) + Scaling factor of diagonals : 1.200 + threshold for scaling factor : 0.000 + + scf convergence criterion : increment of total energy < .1000000D-06 + and increment of one-electron energy < .1000000D-03 + + MOs are in ASCII format ! + + + mo occupation : + irrep mo's occupied + a 112 16 + + number of basis functions : 112 + number of occupied orbitals : 16 + + + reading orbital data $scfmo from file mos + orbital characterization : expanded + virtual MOs provided and orthogonalized by Cholesky decomposition + + automatic virtual orbital shift switched on + shift if e(lumo)-e(homo) < 0.10000000 + + + DSCF restart information will be dumped onto file mos + + Overall gridpoints after grid construction = 12185 + + current damping : 0.300 + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 1 -192.29372813940 -494.75874322 181.87569287 0.000D+00 0.287D-10 + Exc = -26.721881363698 N = 32.002584624 + max. resid. norm for Fia-block= 3.728D-01 for orbital 8a + max. resid. fock norm = 1.227D+01 for orbital 75a + Delta Eig. = 870.9038860943 eV + + current damping : 0.250 + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 2 -193.04589993537 -499.77769458 186.14247243 0.137D+01 0.202D-10 + Exc = -27.000695043509 N = 32.001771983 + Norm of current diis error: 1.7490 + max. resid. norm for Fia-block= 1.505D-01 for orbital 16a + max. resid. fock norm = 3.161D-01 for orbital 99a + Delta Eig. = 193.1107856451 eV + + current damping : 0.150 + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 3 -193.19817618491 -500.51578903 186.72829064 0.669D+00 0.169D-10 + Exc = -27.297609549415 N = 32.001661927 + Norm of current diis error: 0.72489 + max. resid. norm for Fia-block= 5.937D-02 for orbital 15a + max. resid. fock norm = 6.099D-02 for orbital 16a + Delta Eig. = 49.9499767069 eV + + current damping : 0.200 + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 4 -193.22274837497 -498.75040051 184.93832993 0.847D+00 0.135D-10 + Exc = -27.050501405271 N = 32.001617337 + Norm of current diis error: 0.42508 + max. resid. norm for Fia-block= 2.353D-02 for orbital 15a + max. resid. fock norm = 2.979D-02 for orbital 91a + Delta Eig. = 3.4742688100 eV + + current damping : 0.250 + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 5 -193.23564133922 -499.97756705 186.15260351 0.950D-01 0.137D-10 + Exc = -27.180097912811 N = 32.001620773 + Norm of current diis error: 0.66339E-01 + max. resid. norm for Fia-block= 3.893D-03 for orbital 8a + max. resid. fock norm = 6.203D-03 for orbital 8a + mo-orthogonalization: Cholesky decomposition + Delta Eig. = 1.2057965971 eV + + current damping : 0.300 + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 6 -193.23594867389 -499.71496743 185.88969655 0.193D-01 0.131D-10 + Exc = -27.160531263094 N = 32.001617033 + Norm of current diis error: 0.16367E-01 + max. resid. norm for Fia-block= 1.080D-03 for orbital 16a + max. resid. fock norm = 2.496D-03 for orbital 111a + Delta Eig. = 0.0877877295 eV + + current damping : 0.350 + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 7 -193.23596716585 -499.75469533 185.92940596 0.345D-02 0.128D-10 + Exc = -27.163504787884 N = 32.001617866 + Norm of current diis error: 0.57536E-02 + max. resid. norm for Fia-block= 2.956D-04 for orbital 6a + max. resid. fock norm = 8.715D-04 for orbital 111a + Delta Eig. = 0.0424942420 eV + + current damping : 0.200 + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 8 -193.23596906936 -499.76218306 185.93689179 0.104D-02 0.126D-10 + Exc = -27.164271605118 N = 32.001617145 + Norm of current diis error: 0.12506E-02 + max. resid. norm for Fia-block= 1.609D-04 for orbital 15a + max. resid. fock norm = 2.123D-04 for orbital 13a + Delta Eig. = 0.0096885711 eV + + current damping : 0.250 + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 9 -193.23596880104 -499.76329674 185.93800574 0.426D-03 0.124D-10 + Exc = -27.164573197448 N = 32.001617388 + Norm of current diis error: 0.23770E-02 + max. resid. norm for Fia-block= 7.884D-05 for orbital 15a + max. resid. fock norm = 9.029D-05 for orbital 17a + Delta Eig. = 0.0071682814 eV + + current damping : 0.300 + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 10 -193.23596915118 -499.76233479 185.93704343 0.906D-04 0.121D-10 + Exc = -27.164347902922 N = 32.001617315 + Norm of current diis error: 0.69849E-03 + max. resid. norm for Fia-block= 3.126D-05 for orbital 15a + max. resid. fock norm = 3.955D-05 for orbital 13a + mo-orthogonalization: Cholesky decomposition + Delta Eig. = 0.0018524315 eV + + ENERGY CONVERGED ! + + Evaluating v_xc on big grid + Overall gridpoints after grid construction = 46350 + + current damping : 0.350 + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 11 -193.23564839525 -499.76214817 185.93717756 0.244D-04 0.118D-10 + Exc = -27.163971923866 N = 32.000005445 + max. resid. norm for Fia-block= 9.105D-06 for orbital 15a + max. resid. fock norm = 1.285D-05 for orbital 13a + + convergence criteria satisfied after 11 iterations + + + ************************************************************************* + dscf + ************************************************************************* + + + ------------------------------------------ + | total energy = -193.23564839525 | + ------------------------------------------ + : kinetic energy = 192.64177839562 : + : potential energy = -385.87742679087 : + : virial theorem = 1.99692670579 : + : wavefunction norm = 1.00000000000 : + .......................................... + + + : there is no data group $energy + + + : $end is missing + + + orbitals $scfmo will be written to file mos + + irrep 12a 13a 14a 15a 16a + eigenvalues H -0.37054 -0.35780 -0.34160 -0.31956 -0.20993 + eV -10.0830 -9.7363 -9.2955 -8.6958 -5.7126 + occupation 2.0000 2.0000 2.0000 2.0000 2.0000 + + irrep 17a 18a 19a 20a 21a + eigenvalues H -0.05640 0.01758 0.06564 0.08278 0.08361 + eV -1.5347 0.4783 1.7861 2.2526 2.2752 + + + + + ============================================================================== + electrostatic moments + ============================================================================== + + reference point for electrostatic moments: 0.00000 0.00000 0.00000 + + + nuc elec -> total + ------------------------------------------------------------------------------ + charge + ------------------------------------------------------------------------------ + 32.000000 -32.000000 0.000000 + + ------------------------------------------------------------------------------ + dipole moment + ------------------------------------------------------------------------------ + x -0.022825 0.024067 0.001242 + y 4.913738 -3.815618 1.098120 + z 0.000000 -0.000000 -0.000000 + + | dipole moment | = 1.0981 a.u. = 2.7911 debye + + ------------------------------------------------------------------------------ + quadrupole moment + ------------------------------------------------------------------------------ + xx 129.154149 -146.718374 -17.564225 + yy 92.539536 -113.844634 -21.305098 + zz 10.849385 -28.814861 -17.965477 + xy 0.143270 -0.170054 -0.026784 + xz 0.000000 0.000000 0.000000 + yz 0.000000 -0.000000 -0.000000 + + 1/3 trace= -18.944933 + anisotropy= 3.557563 + + ============================================================================== + +HOMO-LUMO Separation + HOMO : -0.20993098 H = -5.71252 eV + LUMO : -0.05639881 H = -1.53469 eV + HOMO-LUMO gap: 0.15353216 H = +4.17783 eV + + ============================================================================== + + + ------------------------------------------------------------------------ + total cpu-time : 9.25 seconds + total wall-time : 11.46 seconds + ------------------------------------------------------------------------ + + **** dscf : all done **** + + + 2023-01-25 00:18:35.889 + diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/dscf/aceton_dftd3_tzvp/ref_output.json b/turbomoleio/testfiles/outputs/TM_v7.6/dscf/aceton_dftd3_tzvp/ref_output.json new file mode 100644 index 0000000..d0829fe --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/dscf/aceton_dftd3_tzvp/ref_output.json @@ -0,0 +1,364 @@ +{ + "@module": "turbomoleio.output.files", + "@class": "ScfOutput", + "@version": "1.3.0", + "dft": { + "@module": "turbomoleio.output.data", + "@class": "DFTData", + "@version": "1.3.0", + "functional": { + "@module": "turbomoleio.output.data", + "@class": "FunctionalData", + "@version": "1.3.0", + "msg": "B-P86 functional\n exchange: LDA + Becke (B88)\n correlation: LDA (VWN) + Perdew (P86)", + "name": "b-p", + "func_type": "GGA", + "xcfun": null + }, + "ri": null, + "spherical_gridsize": 3, + "gridpoints": 302, + "dispersion_correction": { + "@module": "turbomoleio.output.data", + "@class": "DispersionCorrectionData", + "@version": "1.3.0", + "correction": "D3", + "en_corr": -0.005018931 + } + }, + "scf": { + "@module": "turbomoleio.output.data", + "@class": "ScfData", + "@version": "1.3.0", + "iterations": { + "@module": "turbomoleio.output.data", + "@class": "ScfIterationData", + "@version": "1.3.0", + "energies": [ + -192.2937281394, + -193.04589993537, + -193.19817618491, + -193.22274837497, + -193.23564133922, + -193.23594867389, + -193.23596716585, + -193.23596906936, + -193.23596880104, + -193.23596915118, + -193.23564839525 + ], + "first_index": 1, + "n_steps": 11, + "dampings": [ + 0.3, + 0.25, + 0.15, + 0.2, + 0.25, + 0.3, + 0.35, + 0.2, + 0.25, + 0.3, + 0.35 + ], + "converged": true + }, + "diis": true, + "diis_error_vect": "FDS-SDF", + "conv_tot_en": 1e-07, + "conv_one_e_en": 0.0001, + "virtual_orbital_shift_on": true, + "virtual_orbital_shift_limit": 0.1, + "orbital_characterization": "expanded", + "restart_file": "mos", + "n_occupied_orbitals": 16 + }, + "energies": { + "@module": "turbomoleio.output.data", + "@class": "ScfEnergiesData", + "@version": "1.3.0", + "total_energy": -193.23564839525, + "kinetic_energy": 192.64177839562, + "potential_energy": -385.87742679087, + "virial_theorem": 1.99692670579, + "wavefunction_norm": 1.0, + "coulomb_energy": null, + "xc_energy": null, + "ts_energy": null, + "free_energy": null, + "sigma0_energy": null + }, + "electrostatic": { + "@module": "turbomoleio.output.data", + "@class": "ElectrostaticMomentsData", + "@version": "1.3.0", + "charge": 0.0, + "unrestricted_electrons": null, + "dipole_vector": [ + 0.001242, + 1.09812, + -0.0 + ], + "dipole_norm": 1.0981, + "quadrupole_tensor": [ + [ + -17.564225, + -0.026784, + 0.0 + ], + [ + -0.026784, + -21.305098, + -0.0 + ], + [ + 0.0, + -0.0, + -17.965477 + ] + ], + "quadrupole_trace": -56.834799, + "quadrupole_anisotropy": 3.557563 + }, + "geometry": { + "@module": "turbomoleio.output.data", + "@class": "GeometryData", + "@version": "1.3.0", + "center_of_mass": [ + -0.0, + -0.0, + 0.0 + ], + "center_of_charge": [ + -0.00071328, + 0.15355432, + 0.0 + ], + "molecule": { + "@module": "pymatgen.core.structure", + "@class": "Molecule", + "charge": 0.0, + "spin_multiplicity": 1, + "sites": [ + { + "name": "O", + "species": [ + { + "element": "O", + "occu": 1 + } + ], + "xyz": [ + 0.022966476165214012, + -1.2875090725021459, + 0.0 + ], + "properties": {} + }, + { + "name": "C", + "species": [ + { + "element": "C", + "occu": 1 + } + ], + "xyz": [ + 1.2715590998541417, + 0.7042969892071365, + 0.0 + ], + "properties": {} + }, + { + "name": "C", + "species": [ + { + "element": "C", + "occu": 1 + } + ], + "xyz": [ + -1.2957932570704787, + 0.6663116276965021, + 0.0 + ], + "properties": {} + }, + { + "name": "C", + "species": [ + { + "element": "C", + "occu": 1 + } + ], + "xyz": [ + -0.004286668789957168, + -0.09678236841659732, + 0.0 + ], + "properties": {} + }, + { + "name": "H", + "species": [ + { + "element": "H", + "occu": 1 + } + ], + "xyz": [ + 1.106089878719294, + 1.7732102744060798, + 0.0 + ], + "properties": {} + }, + { + "name": "H", + "species": [ + { + "element": "H", + "occu": 1 + } + ], + "xyz": [ + -2.1314191022244775, + -0.015431691195873688, + 0.0 + ], + "properties": {} + }, + { + "name": "H", + "species": [ + { + "element": "H", + "occu": 1 + } + ], + "xyz": [ + 1.86029722730122, + 0.4419473695773719, + 0.8699133480654756 + ], + "properties": {} + }, + { + "name": "H", + "species": [ + { + "element": "H", + "occu": 1 + } + ], + "xyz": [ + 1.86029722730122, + 0.4419473695773719, + -0.8699133480654756 + ], + "properties": {} + }, + { + "name": "H", + "species": [ + { + "element": "H", + "occu": 1 + } + ], + "xyz": [ + -1.3599752453594, + 1.3078400450697227, + 0.8731089963243978 + ], + "properties": {} + }, + { + "name": "H", + "species": [ + { + "element": "H", + "occu": 1 + } + ], + "xyz": [ + -1.3599752453594, + 1.3078400450697227, + -0.8731089963243978 + ], + "properties": {} + } + ] + } + }, + "basis": { + "@module": "turbomoleio.output.data", + "@class": "BasisData", + "@version": "1.3.0", + "basis_per_specie": { + "o": "def-TZVP", + "c": "def-TZVP", + "h": "def-TZVP" + }, + "aux_basis_per_specie": {}, + "number_scf_basis_func": 112, + "number_scf_aux_basis_func": null + }, + "run": { + "@module": "turbomoleio.output.data", + "@class": "RunData", + "@version": "1.3.0", + "host": "frontal3", + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:18:24.476000" + }, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:18:35.889000" + }, + "cpu_time": 9.25, + "wall_time": 11.46 + }, + "tm": { + "@module": "turbomoleio.output.data", + "@class": "TurbomoleData", + "@version": "1.3.0", + "version": "7.6", + "build": null, + "executable": "dscf" + }, + "cosmo": null, + "spin": { + "@module": "turbomoleio.output.data", + "@class": "SpinData", + "@version": "1.3.0", + "unrestricted": false, + "s2": null + }, + "integral": { + "@module": "turbomoleio.output.data", + "@class": "IntegralData", + "@version": "1.3.0", + "integral_neglect_threshold": 2.9e-11, + "thize": 1e-05, + "thime": 5 + }, + "smearing": null, + "symmetry": { + "@module": "turbomoleio.output.data", + "@class": "SymmetryData", + "@version": "1.3.0", + "symbol": "c1", + "n_reps": 1, + "reps": [ + "a" + ] + }, + "periodicity": null +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/dscf/aceton_dftd3_tzvp/ref_parser.json b/turbomoleio/testfiles/outputs/TM_v7.6/dscf/aceton_dftd3_tzvp/ref_parser.json new file mode 100644 index 0000000..d64d341 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/dscf/aceton_dftd3_tzvp/ref_parser.json @@ -0,0 +1,265 @@ +{ + "all_done": true, + "header": { + "executable": "dscf", + "host": "frontal3", + "tm_version": "7.6", + "tm_build": null, + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:18:24.476000" + } + }, + "centers": { + "center_of_mass": [ + -0.0, + -0.0, + 0.0 + ], + "center_of_charge": [ + -0.00071328, + 0.15355432, + 0.0 + ] + }, + "coordinates": { + "coords": [ + [ + 0.04340035, + -2.43303953, + 0.0 + ], + [ + 2.40289845, + 1.33092842, + 0.0 + ], + [ + -2.44869437, + 1.25914649, + 0.0 + ], + [ + -0.00810063, + -0.18289217, + 0.0 + ], + [ + 2.09020694, + 3.35088178, + 0.0 + ], + [ + -4.02779836, + -0.02916167, + 0.0 + ], + [ + 3.51545227, + 0.83515949, + 1.64389798 + ], + [ + 3.51545227, + 0.83515949, + -1.64389798 + ], + [ + -2.56998075, + 2.4714595, + 1.64993688 + ], + [ + -2.56998075, + 2.4714595, + -1.64993688 + ] + ], + "species": [ + "o", + "c", + "c", + "c", + "h", + "h", + "h", + "h", + "h", + "h" + ], + "charges": [ + 8.0, + 6.0, + 6.0, + 6.0, + 1.0, + 1.0, + 1.0, + 1.0, + 1.0, + 1.0 + ], + "isotopes": [ + 0, + 0, + 0, + 0, + 0, + 0, + 0, + 0, + 0, + 0 + ] + }, + "basis": { + "basis_per_specie": { + "o": "def-TZVP", + "c": "def-TZVP", + "h": "def-TZVP" + }, + "aux_basis_per_specie": {}, + "number_scf_basis_func": 112, + "number_scf_aux_basis_func": null + }, + "symmetry": { + "symbol": "c1", + "n_reps": 1, + "reps": [ + "a" + ] + }, + "cosmo_header": null, + "density_functional_data": { + "functional_msg": "B-P86 functional\n exchange: LDA + Becke (B88)\n correlation: LDA (VWN) + Perdew (P86)", + "functional_name": "b-p", + "functional_type": "GGA", + "xcfun": null, + "spherical_gridsize": 3, + "gridpoints": 302 + }, + "rij_info": null, + "dftd": { + "correction": "D3", + "en_corr": -0.005018931 + }, + "pre_scf_run": { + "diis": true, + "diis_error_vect": "FDS-SDF", + "conv_tot_en": 1e-07, + "conv_one_e_en": 0.0001, + "virtual_orbital_shift_on": true, + "virtual_orbital_shift_limit": 0.1, + "orbital_characterization": "expanded", + "restart_file": "mos", + "n_occupied_orbitals": 16 + }, + "scf_iterations": { + "energies": [ + -192.2937281394, + -193.04589993537, + -193.19817618491, + -193.22274837497, + -193.23564133922, + -193.23594867389, + -193.23596716585, + -193.23596906936, + -193.23596880104, + -193.23596915118, + -193.23564839525 + ], + "first_index": 1, + "n_steps": 11, + "dampings": [ + 0.3, + 0.25, + 0.15, + 0.2, + 0.25, + 0.3, + 0.35, + 0.2, + 0.25, + 0.3, + 0.35 + ], + "converged": true + }, + "scf_energies": { + "total_energy": -193.23564839525, + "kinetic_energy": 192.64177839562, + "potential_energy": -385.87742679087, + "virial_theorem": 1.99692670579, + "wavefunction_norm": 1.0 + }, + "cosmo_results": null, + "electrostatic_moments": { + "unrestricted_electrons": null, + "charge": 0.0, + "dipole": { + "norm": 1.0981, + "moment": [ + 0.001242, + 1.09812, + -0.0 + ] + }, + "quadrupole": { + "trace": -56.834799, + "anisotropy": 3.557563, + "moment": [ + [ + -17.564225, + -0.026784, + 0.0 + ], + [ + -0.026784, + -21.305098, + -0.0 + ], + [ + 0.0, + -0.0, + -17.965477 + ] + ] + } + }, + "timings": { + "cpu_time": 9.25, + "wall_time": 11.46, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:18:35.889000" + } + }, + "s2": null, + "is_uhf": false, + "fermi": null, + "integral": { + "integral_neglect_threshold": 2.9e-11, + "thize": 1e-05, + "thime": 5 + }, + "pre_escf_run": null, + "escf_iterations": null, + "escf_gs_total_en": null, + "escf_excitations": null, + "rdgrad_memory": null, + "gradient": null, + "egrad_excited_state": null, + "statpt_info": null, + "relax_info": null, + "relax_gradient_values": null, + "relax_conv_info": null, + "aoforce_numerical_integration": null, + "aoforce_analysis": null, + "mp2_results": { + "energy": null + }, + "riper_scf_energies": null, + "periodicity_data": null +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/dscf/h2o_std/dscf.log b/turbomoleio/testfiles/outputs/TM_v7.6/dscf/h2o_std/dscf.log new file mode 100644 index 0000000..171e5fe --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/dscf/h2o_std/dscf.log @@ -0,0 +1,337 @@ + + dscf (frontal3) : TURBOMOLE rev. V7-6 19 Oct 2021 at 10:10:11 compiled Oct 19th 2021 + Copyright (C) 2021 TURBOMOLE GmbH, Karlsruhe + + + 2023-01-25 00:18:40.142 + + + + d s c f - program + + idea & directorship : reinhart ahlrichs + program development : marco haeser + michael baer + dft version : oliver treutler + + + quantum chemistry group + universitaet karlsruhe + germany + + + + *-----------------------------------------------------------------------* + | program will use 1 thread(s) | + *-----------------------------------------------------------------------* + + + +--------------------------------------------------+ + | Atomic coordinate, charge and isotop information | + +--------------------------------------------------+ + + atomic coordinates atom charge isotop + 0.00000000 0.00000000 -0.72557892 o 8.000 0 + 1.41713421 0.00000000 0.36278946 h 1.000 0 + -1.41713421 0.00000000 0.36278946 h 1.000 0 + + center of nuclear mass : 0.00000000 0.00000000 -0.60378908 + center of nuclear charge: 0.00000000 0.00000000 -0.50790525 + + ************************************************************************* + dscf + ************************************************************************* + + + + +--------------------------------------------------+ + | basis set information | + +--------------------------------------------------+ + + we will work with the 1s 3p 5d 7f 9g ... basis set + ...i.e. with spherical basis functions... + + type atoms prim cont basis + --------------------------------------------------------------------------- + o 1 24 14 def-SV(P) [3s2p1d|7s4p1d] + h 2 4 2 def-SV(P) [2s|4s] + --------------------------------------------------------------------------- + total: 3 32 18 + --------------------------------------------------------------------------- + + total number of primitive shells : 16 + total number of contracted shells : 10 + total number of cartesian basis functions : 19 + total number of SCF-basis functions : 18 + + + integral neglect threshold : 0.18E-09 + integral storage threshold THIZE : 0.10E-04 + integral storage threshold THIME : 5 + + + symmetry group of the molecule : c2v + + the group has the following generators : + c2(z) + mirror plane sigma(xz) + + 4 symmetry operations found + + there are 4 real representations : a1 a2 b1 b2 + + maximum number of shells which are related by symmetry : 2 + + + ------------------ + density functional + ------------------ + B-P86 functional + exchange: LDA + Becke (B88) + correlation: LDA (VWN) + Perdew (P86) + + iterations will be done with small grid + + spherical integration : Lebedev's spherical grid + spherical gridsize : 3 + i.e. gridpoints : 302 + value for diffuse not defined + radial integration : Chebyshev 2nd kind (scaling 3) + radial gridsize : 3 + integration cells : 2 + partition function : becke + partition sharpness : 3 + + + ------------------------ + nuclear repulsion energy : 9.30715477358 + ------------------------ + + + ----------------- + -S,T+V- integrals + ----------------- + + 1e-integrals will be neglected if expon. factor < 0.175893E-10 + + Difference densities algorithm switched on. + The maximal number of linear combinations of + difference densities is 20 . + + DIIS switched on: error vector is FDS-SDF + Max. Iterations for DIIS is : 4 + DIIS matrix (see manual) + Scaling factor of diagonals : 1.200 + threshold for scaling factor : 0.000 + + scf convergence criterion : increment of total energy < .1000000D-06 + and increment of one-electron energy < .1000000D-03 + + MOs are in ASCII format ! + + + mo occupation : + irrep mo's occupied + a1 9 3 + a2 1 0 + b1 5 1 + b2 3 1 + + number of basis functions : 18 + number of occupied orbitals : 5 + + + reading orbital data $scfmo from file mos + orbital characterization : expanded + virtual MOs provided and orthogonalized by Cholesky decomposition + + automatic virtual orbital shift switched on + shift if e(lumo)-e(homo) < 0.10000000 + + + DSCF restart information will be dumped onto file mos + + Overall gridpoints after grid construction = 1098 + + current damping : 0.300 + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 1 -76.143808666909 -124.43866883 38.987705388 0.000D+00 0.175D-09 + Exc = -9.503661308938 N = 9.9990627195 + max. resid. norm for Fia-block= 2.533D-01 for orbital 3a1 + max. resid. fock norm = 1.169D+00 for orbital 5a1 + Delta Eig. = 47.0795604802 eV + + current damping : 0.250 + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 2 -76.317603169266 -122.45259042 36.827832480 0.608D+00 0.116D-09 + Exc = -9.237016726629 N = 9.9994270821 + Norm of current diis error: 0.35138 + max. resid. norm for Fia-block= 8.467D-02 for orbital 1b1 + max. resid. fock norm = 9.886D-02 for orbital 4a1 + Delta Eig. = 10.1431637969 eV + + current damping : 0.200 + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 3 -76.337404295078 -123.68673977 38.042180702 0.298D+00 0.956D-10 + Exc = -9.425448034189 N = 9.9992826591 + Norm of current diis error: 0.17642 + max. resid. norm for Fia-block= 2.820D-02 for orbital 3a1 + max. resid. fock norm = 2.848D-02 for orbital 3a1 + Delta Eig. = 4.0440013207 eV + + current damping : 0.250 + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 4 -76.342251381087 -123.12626297 37.476856814 0.705D-01 0.858D-10 + Exc = -9.353129874312 N = 9.9993443737 + Norm of current diis error: 0.42189E-01 + max. resid. norm for Fia-block= 5.383D-03 for orbital 2a1 + max. resid. fock norm = 5.459D-03 for orbital 2a1 + Delta Eig. = 0.2972737513 eV + + current damping : 0.300 + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 5 -76.342476694949 -123.20950220 37.559870734 0.875D-02 0.815D-10 + Exc = -9.364184193806 N = 9.9993390173 + Norm of current diis error: 0.73937E-02 + max. resid. norm for Fia-block= 9.405D-04 for orbital 1b1 + max. resid. fock norm = 9.405D-04 for orbital 1b1 + mo-orthogonalization: Cholesky decomposition + Delta Eig. = 0.0566919803 eV + + current damping : 0.150 + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 6 -76.342484142411 -123.22573147 37.576092557 0.368D-03 0.774D-10 + Exc = -9.366413451126 N = 9.9993373864 + Norm of current diis error: 0.10579E-02 + max. resid. norm for Fia-block= 1.598D-04 for orbital 2a1 + max. resid. fock norm = 1.670D-04 for orbital 4a1 + Delta Eig. = 0.0152574062 eV + + current damping : 0.100 + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 7 -76.342484303361 -123.22796150 37.578322418 0.119D-03 0.752D-10 + Exc = -9.366746448968 N = 9.9993372713 + Norm of current diis error: 0.13713E-03 + max. resid. norm for Fia-block= 2.132D-05 for orbital 1b1 + max. resid. fock norm = 2.592D-05 for orbital 3a1 + Delta Eig. = 0.0020598535 eV + + ENERGY CONVERGED ! + + Evaluating v_xc on big grid + Overall gridpoints after grid construction = 3891 + + current damping : 0.150 + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 8 -76.342762152503 -123.22820928 37.578292351 0.892D-05 0.732D-10 + Exc = -9.367056564507 N = 9.9999983776 + max. resid. norm for Fia-block= 3.156D-06 for orbital 2a1 + max. resid. fock norm = 3.998D-06 for orbital 2a1 + + convergence criteria satisfied after 8 iterations + + + ************************************************************************* + dscf + ************************************************************************* + + + ------------------------------------------ + | total energy = -76.34276215250 | + ------------------------------------------ + : kinetic energy = 75.98646113665 : + : potential energy = -152.32922328915 : + : virial theorem = 1.99533287759 : + : wavefunction norm = 1.00000000000 : + .......................................... + + + : there is no data group $energy + + + : $end is missing + + + orbitals $scfmo will be written to file mos + + irrep 1a1 2a1 3a1 4a1 5a1 + eigenvalues H -18.75057 -0.90865 -0.30996 0.03391 0.63293 + eV -510.2329 -24.7259 -8.4345 0.9226 17.2231 + occupation 2.0000 2.0000 2.0000 + + irrep 6a1 7a1 8a1 9a1 + eigenvalues H 0.87619 1.10900 2.47780 2.86046 + eV 23.8426 30.1776 67.4250 77.8377 + + irrep 1a2 + eigenvalues H 2.49480 + eV 67.8875 + + irrep 1b1 2b1 3b1 4b1 5b1 + eigenvalues H -0.47816 0.11369 0.54412 1.01988 3.00641 + eV -13.0114 3.0936 14.8065 27.7526 81.8091 + occupation 2.0000 + + irrep 1b2 2b2 3b2 + eigenvalues H -0.23517 0.86116 2.52749 + eV -6.3995 23.4335 68.7769 + occupation 2.0000 + + + + + ============================================================================== + electrostatic moments + ============================================================================== + + reference point for electrostatic moments: 0.00000 0.00000 0.00000 + + + nuc elec -> total + ------------------------------------------------------------------------------ + charge + ------------------------------------------------------------------------------ + 10.000000 -10.000000 -0.000000 + + ------------------------------------------------------------------------------ + dipole moment + ------------------------------------------------------------------------------ + x 0.000000 0.000000 0.000000 + y 0.000000 0.000000 0.000000 + z -5.079052 5.912637 0.833584 + + | dipole moment | = 0.8336 a.u. = 2.1188 debye + + ------------------------------------------------------------------------------ + quadrupole moment + ------------------------------------------------------------------------------ + xx 4.016539 -7.255366 -3.238827 + yy 0.000000 -5.264554 -5.264554 + zz 4.474951 -9.815018 -5.340067 + xy 0.000000 0.000000 0.000000 + xz 0.000000 -0.000000 -0.000000 + yz 0.000000 0.000000 0.000000 + + 1/3 trace= -4.614483 + anisotropy= 2.064519 + + ============================================================================== + +HOMO-LUMO Separation + HOMO : -0.23517482 H = -6.39944 eV + LUMO : 0.03390547 H = +0.92262 eV + HOMO-LUMO gap: 0.26908029 H = +7.32205 eV + + ============================================================================== + + + ------------------------------------------------------------------------ + total cpu-time : 0.14 seconds + total wall-time : 1.19 seconds + ------------------------------------------------------------------------ + + **** dscf : all done **** + + + 2023-01-25 00:18:41.277 + diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/dscf/h2o_std/ref_output.json b/turbomoleio/testfiles/outputs/TM_v7.6/dscf/h2o_std/ref_output.json new file mode 100644 index 0000000..886c458 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/dscf/h2o_std/ref_output.json @@ -0,0 +1,249 @@ +{ + "@module": "turbomoleio.output.files", + "@class": "ScfOutput", + "@version": "1.3.0", + "dft": { + "@module": "turbomoleio.output.data", + "@class": "DFTData", + "@version": "1.3.0", + "functional": { + "@module": "turbomoleio.output.data", + "@class": "FunctionalData", + "@version": "1.3.0", + "msg": "B-P86 functional\n exchange: LDA + Becke (B88)\n correlation: LDA (VWN) + Perdew (P86)", + "name": "b-p", + "func_type": "GGA", + "xcfun": null + }, + "ri": null, + "spherical_gridsize": 3, + "gridpoints": 302, + "dispersion_correction": null + }, + "scf": { + "@module": "turbomoleio.output.data", + "@class": "ScfData", + "@version": "1.3.0", + "iterations": { + "@module": "turbomoleio.output.data", + "@class": "ScfIterationData", + "@version": "1.3.0", + "energies": [ + -76.143808666909, + -76.317603169266, + -76.337404295078, + -76.342251381087, + -76.342476694949, + -76.342484142411, + -76.342484303361, + -76.342762152503 + ], + "first_index": 1, + "n_steps": 8, + "dampings": [ + 0.3, + 0.25, + 0.2, + 0.25, + 0.3, + 0.15, + 0.1, + 0.15 + ], + "converged": true + }, + "diis": true, + "diis_error_vect": "FDS-SDF", + "conv_tot_en": 1e-07, + "conv_one_e_en": 0.0001, + "virtual_orbital_shift_on": true, + "virtual_orbital_shift_limit": 0.1, + "orbital_characterization": "expanded", + "restart_file": "mos", + "n_occupied_orbitals": 5 + }, + "energies": { + "@module": "turbomoleio.output.data", + "@class": "ScfEnergiesData", + "@version": "1.3.0", + "total_energy": -76.3427621525, + "kinetic_energy": 75.98646113665, + "potential_energy": -152.32922328915, + "virial_theorem": 1.99533287759, + "wavefunction_norm": 1.0, + "coulomb_energy": null, + "xc_energy": null, + "ts_energy": null, + "free_energy": null, + "sigma0_energy": null + }, + "electrostatic": { + "@module": "turbomoleio.output.data", + "@class": "ElectrostaticMomentsData", + "@version": "1.3.0", + "charge": -0.0, + "unrestricted_electrons": null, + "dipole_vector": [ + 0.0, + 0.0, + 0.833584 + ], + "dipole_norm": 0.8336, + "quadrupole_tensor": [ + [ + -3.238827, + 0.0, + -0.0 + ], + [ + 0.0, + -5.264554, + 0.0 + ], + [ + -0.0, + 0.0, + -5.340067 + ] + ], + "quadrupole_trace": -13.843449, + "quadrupole_anisotropy": 2.064519 + }, + "geometry": { + "@module": "turbomoleio.output.data", + "@class": "GeometryData", + "@version": "1.3.0", + "center_of_mass": [ + 0.0, + 0.0, + -0.60378908 + ], + "center_of_charge": [ + 0.0, + 0.0, + -0.50790525 + ], + "molecule": { + "@module": "pymatgen.core.structure", + "@class": "Molecule", + "charge": 0.0, + "spin_multiplicity": 1, + "sites": [ + { + "name": "O", + "species": [ + { + "element": "O", + "occu": 1 + } + ], + "xyz": [ + 0.0, + 0.0, + -0.38395982917561094 + ], + "properties": {} + }, + { + "name": "H", + "species": [ + { + "element": "H", + "occu": 1 + } + ], + "xyz": [ + 0.7499151287230262, + 0.0, + 0.19197991458780547 + ], + "properties": {} + }, + { + "name": "H", + "species": [ + { + "element": "H", + "occu": 1 + } + ], + "xyz": [ + -0.7499151287230262, + 0.0, + 0.19197991458780547 + ], + "properties": {} + } + ] + } + }, + "basis": { + "@module": "turbomoleio.output.data", + "@class": "BasisData", + "@version": "1.3.0", + "basis_per_specie": { + "o": "def-SV(P)", + "h": "def-SV(P)" + }, + "aux_basis_per_specie": {}, + "number_scf_basis_func": 18, + "number_scf_aux_basis_func": null + }, + "run": { + "@module": "turbomoleio.output.data", + "@class": "RunData", + "@version": "1.3.0", + "host": "frontal3", + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:18:40.142000" + }, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:18:41.277000" + }, + "cpu_time": 0.14, + "wall_time": 1.19 + }, + "tm": { + "@module": "turbomoleio.output.data", + "@class": "TurbomoleData", + "@version": "1.3.0", + "version": "7.6", + "build": null, + "executable": "dscf" + }, + "cosmo": null, + "spin": { + "@module": "turbomoleio.output.data", + "@class": "SpinData", + "@version": "1.3.0", + "unrestricted": false, + "s2": null + }, + "integral": { + "@module": "turbomoleio.output.data", + "@class": "IntegralData", + "@version": "1.3.0", + "integral_neglect_threshold": 1.8e-10, + "thize": 1e-05, + "thime": 5 + }, + "smearing": null, + "symmetry": { + "@module": "turbomoleio.output.data", + "@class": "SymmetryData", + "@version": "1.3.0", + "symbol": "c2v", + "n_reps": 4, + "reps": [ + "a1", + "a2", + "b1", + "b2" + ] + }, + "periodicity": null +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/dscf/h2o_std/ref_parser.json b/turbomoleio/testfiles/outputs/TM_v7.6/dscf/h2o_std/ref_parser.json new file mode 100644 index 0000000..04d2cb7 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/dscf/h2o_std/ref_parser.json @@ -0,0 +1,202 @@ +{ + "all_done": true, + "header": { + "executable": "dscf", + "host": "frontal3", + "tm_version": "7.6", + "tm_build": null, + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:18:40.142000" + } + }, + "centers": { + "center_of_mass": [ + 0.0, + 0.0, + -0.60378908 + ], + "center_of_charge": [ + 0.0, + 0.0, + -0.50790525 + ] + }, + "coordinates": { + "coords": [ + [ + 0.0, + 0.0, + -0.72557892 + ], + [ + 1.41713421, + 0.0, + 0.36278946 + ], + [ + -1.41713421, + 0.0, + 0.36278946 + ] + ], + "species": [ + "o", + "h", + "h" + ], + "charges": [ + 8.0, + 1.0, + 1.0 + ], + "isotopes": [ + 0, + 0, + 0 + ] + }, + "basis": { + "basis_per_specie": { + "o": "def-SV(P)", + "h": "def-SV(P)" + }, + "aux_basis_per_specie": {}, + "number_scf_basis_func": 18, + "number_scf_aux_basis_func": null + }, + "symmetry": { + "symbol": "c2v", + "n_reps": 4, + "reps": [ + "a1", + "a2", + "b1", + "b2" + ] + }, + "cosmo_header": null, + "density_functional_data": { + "functional_msg": "B-P86 functional\n exchange: LDA + Becke (B88)\n correlation: LDA (VWN) + Perdew (P86)", + "functional_name": "b-p", + "functional_type": "GGA", + "xcfun": null, + "spherical_gridsize": 3, + "gridpoints": 302 + }, + "rij_info": null, + "dftd": null, + "pre_scf_run": { + "diis": true, + "diis_error_vect": "FDS-SDF", + "conv_tot_en": 1e-07, + "conv_one_e_en": 0.0001, + "virtual_orbital_shift_on": true, + "virtual_orbital_shift_limit": 0.1, + "orbital_characterization": "expanded", + "restart_file": "mos", + "n_occupied_orbitals": 5 + }, + "scf_iterations": { + "energies": [ + -76.143808666909, + -76.317603169266, + -76.337404295078, + -76.342251381087, + -76.342476694949, + -76.342484142411, + -76.342484303361, + -76.342762152503 + ], + "first_index": 1, + "n_steps": 8, + "dampings": [ + 0.3, + 0.25, + 0.2, + 0.25, + 0.3, + 0.15, + 0.1, + 0.15 + ], + "converged": true + }, + "scf_energies": { + "total_energy": -76.3427621525, + "kinetic_energy": 75.98646113665, + "potential_energy": -152.32922328915, + "virial_theorem": 1.99533287759, + "wavefunction_norm": 1.0 + }, + "cosmo_results": null, + "electrostatic_moments": { + "unrestricted_electrons": null, + "charge": -0.0, + "dipole": { + "norm": 0.8336, + "moment": [ + 0.0, + 0.0, + 0.833584 + ] + }, + "quadrupole": { + "trace": -13.843449, + "anisotropy": 2.064519, + "moment": [ + [ + -3.238827, + 0.0, + -0.0 + ], + [ + 0.0, + -5.264554, + 0.0 + ], + [ + -0.0, + 0.0, + -5.340067 + ] + ] + } + }, + "timings": { + "cpu_time": 0.14, + "wall_time": 1.19, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:18:41.277000" + } + }, + "s2": null, + "is_uhf": false, + "fermi": null, + "integral": { + "integral_neglect_threshold": 1.8e-10, + "thize": 1e-05, + "thime": 5 + }, + "pre_escf_run": null, + "escf_iterations": null, + "escf_gs_total_en": null, + "escf_excitations": null, + "rdgrad_memory": null, + "gradient": null, + "egrad_excited_state": null, + "statpt_info": null, + "relax_info": null, + "relax_gradient_values": null, + "relax_conv_info": null, + "aoforce_numerical_integration": null, + "aoforce_analysis": null, + "mp2_results": { + "energy": null + }, + "riper_scf_energies": null, + "periodicity_data": null +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/dscf/h2o_uhf/dscf.log b/turbomoleio/testfiles/outputs/TM_v7.6/dscf/h2o_uhf/dscf.log new file mode 100644 index 0000000..e0d1d23 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/dscf/h2o_uhf/dscf.log @@ -0,0 +1,393 @@ + + dscf (frontal3) : TURBOMOLE rev. V7-6 19 Oct 2021 at 10:10:11 compiled Oct 19th 2021 + Copyright (C) 2021 TURBOMOLE GmbH, Karlsruhe + + + 2023-01-25 00:18:19.500 + + + + d s c f - program + + idea & directorship : reinhart ahlrichs + program development : marco haeser + michael baer + dft version : oliver treutler + + + quantum chemistry group + universitaet karlsruhe + germany + + + + *-----------------------------------------------------------------------* + | program will use 1 thread(s) | + *-----------------------------------------------------------------------* + + + +--------------------------------------------------+ + | Atomic coordinate, charge and isotop information | + +--------------------------------------------------+ + + atomic coordinates atom charge isotop + 0.00000000 0.00000000 -0.72557892 o 8.000 0 + 1.41713421 0.00000000 0.36278946 h 1.000 0 + -1.41713421 0.00000000 0.36278946 h 1.000 0 + + center of nuclear mass : 0.00000000 0.00000000 -0.60378908 + center of nuclear charge: 0.00000000 0.00000000 -0.50790525 + + ************************************************************************* + dscf + ************************************************************************* + + + + +--------------------------------------------------+ + | basis set information | + +--------------------------------------------------+ + + we will work with the 1s 3p 5d 7f 9g ... basis set + ...i.e. with spherical basis functions... + + type atoms prim cont basis + --------------------------------------------------------------------------- + o 1 24 14 def-SV(P) [3s2p1d|7s4p1d] + h 2 4 2 def-SV(P) [2s|4s] + --------------------------------------------------------------------------- + total: 3 32 18 + --------------------------------------------------------------------------- + + total number of primitive shells : 16 + total number of contracted shells : 10 + total number of cartesian basis functions : 19 + total number of SCF-basis functions : 18 + + + integral neglect threshold : 0.18E-09 + integral storage threshold THIZE : 0.10E-04 + integral storage threshold THIME : 5 + + + symmetry group of the molecule : c1 + + the group has the following generators : + c1(z) + + 1 symmetry operations found + + there are 1 real representations : a + + maximum number of shells which are related by symmetry : 1 + + + ------------------ + density functional + ------------------ + B-P86 functional + exchange: LDA + Becke (B88) + correlation: LDA (VWN) + Perdew (P86) + + iterations will be done with small grid + + spherical integration : Lebedev's spherical grid + spherical gridsize : 3 + i.e. gridpoints : 302 + value for diffuse not defined + radial integration : Chebyshev 2nd kind (scaling 3) + radial gridsize : 3 + integration cells : 3 + partition function : becke + partition sharpness : 3 + + + ------------------------ + nuclear repulsion energy : 9.30715477358 + ------------------------ + + + ----------------- + -S,T+V- integrals + ----------------- + + 1e-integrals will be neglected if expon. factor < 0.175893E-10 + + Difference densities algorithm switched on. + The maximal number of linear combinations of + difference densities is 20 . + + DIIS switched on: error vector is FDS-SDF + Max. Iterations for DIIS is : 4 + DIIS matrix (see manual) + Scaling factor of diagonals : 1.200 + threshold for scaling factor : 0.000 + + scf convergence criterion : increment of total energy < .1000000D-06 + and increment of one-electron energy < .1000000D-03 + + MOs are in ASCII format ! + + + mo occupation : + irrep mo's occupied + a 18 5 + + number of basis functions : 18 + number of occupied orbitals : 5 + + + reading orbital data $uhfmo_alpha from file alpha + orbital characterization : expanded + + reading orbital data $uhfmo_beta from file beta + orbital characterization : expanded + virtual MOs provided and orthogonalized by Cholesky decomposition + virtual MOs provided and orthogonalized by Cholesky decomposition + + UHF mode switched on ! + + closed shell shift switched on + all occupied orbitals are shifted by 0.05000 + + + DSCF restart information will be dumped onto file alpha + + Overall gridpoints after grid construction = 3534 + + current damping : 1.000 + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 1 -75.709149222343 -117.09679488 32.080490887 0.000D+00 0.175D-09 + Na = 4.9995313597 Nb = 3.9998793207 + Exc = -8.787711297908 N = 8.9994106804 + max. resid. norm for Fia-block= 2.634D-01 for orbital 1a beta + max. resid. fock norm = 1.108D+00 for orbital 9a beta + Delta Eig. = 32.3297071545 eV + + current damping : 0.950 + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 2 -75.816081492466 -117.73251083 32.609274567 0.251D+00 0.111D-09 + Na = 4.9995296196 Nb = 3.9998854701 + Exc = -8.886876110109 N = 8.9994150898 + Norm of current diis error: 0.39063 + max. resid. norm for Fia-block= 1.423D-01 for orbital 1a beta + max. resid. fock norm = 1.513D-01 for orbital 6a alpha + Delta Eig. = 15.7769639018 eV + + current damping : 0.800 + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 3 -75.857212061739 -117.87977404 32.715407205 0.852D-01 0.798D-10 + Na = 4.9995194543 Nb = 3.9998865583 + Exc = -8.920115837118 N = 8.9994060126 + Norm of current diis error: 0.21374 + max. resid. norm for Fia-block= 7.979D-02 for orbital 3a beta + max. resid. fock norm = 8.121D-02 for orbital 6a alpha + Delta Eig. = 8.1568076473 eV + + current damping : 0.650 + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 4 -75.874157090013 -118.00279397 32.821482106 0.240D-01 0.652D-10 + Na = 4.9995055824 Nb = 3.9998842701 + Exc = -8.949606521034 N = 8.9993898525 + Norm of current diis error: 0.10470 + max. resid. norm for Fia-block= 4.111D-02 for orbital 3a beta + max. resid. fock norm = 4.111D-02 for orbital 3a beta + Delta Eig. = 3.8632431380 eV + + current damping : 0.500 + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 5 -75.879194045962 -118.06323641 32.876887589 0.533D-02 0.578D-10 + Na = 4.9994965287 Nb = 3.9998828259 + Exc = -8.966289064502 N = 8.9993793546 + Norm of current diis error: 0.44649E-01 + max. resid. norm for Fia-block= 1.817D-02 for orbital 3a beta + max. resid. fock norm = 1.817D-02 for orbital 3a beta + mo-orthogonalization: Cholesky decomposition + Delta Eig. = 1.6437129556 eV + + current damping : 0.350 + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 6 -75.880260802113 -118.09662398 32.909208403 0.120D-02 0.539D-10 + Na = 4.9994914995 Nb = 3.9998820931 + Exc = -8.975287379639 N = 8.9993735925 + Norm of current diis error: 0.15732E-01 + max. resid. norm for Fia-block= 6.684D-03 for orbital 3a beta + max. resid. fock norm = 6.684D-03 for orbital 3a beta + Delta Eig. = 0.5952940669 eV + + current damping : 0.200 + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 7 -75.880414311673 -118.10215102 32.914581937 0.696D-03 0.519D-10 + Na = 4.9994897077 Nb = 3.9998821182 + Exc = -8.977840271640 N = 8.9993718259 + Norm of current diis error: 0.46809E-02 + max. resid. norm for Fia-block= 2.042D-03 for orbital 3a alpha + max. resid. fock norm = 2.042D-03 for orbital 3a alpha + Delta Eig. = 0.1742466019 eV + + current damping : 0.100 + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 8 -75.880428556505 -118.11063937 32.923056043 0.174D-03 0.507D-10 + Na = 4.9994887186 Nb = 3.9998819863 + Exc = -8.979642722323 N = 8.9993707048 + Norm of current diis error: 0.10859E-02 + max. resid. norm for Fia-block= 5.246D-04 for orbital 3a beta + max. resid. fock norm = 5.513D-04 for orbital 9a beta + Delta Eig. = 0.0538966289 eV + + current damping : 0.150 + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 9 -75.880429245802 -118.10668070 32.919096683 0.958D-04 0.502D-10 + Na = 4.9994887929 Nb = 3.9998821627 + Exc = -8.979203059403 N = 8.9993709555 + Norm of current diis error: 0.64524E-03 + max. resid. norm for Fia-block= 1.707D-04 for orbital 3a alpha + max. resid. fock norm = 1.707D-04 for orbital 3a alpha + Delta Eig. = 0.0093636153 eV + + current damping : 0.200 + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 10 -75.880429377768 -118.10884355 32.921259400 0.113D-04 0.498D-10 + Na = 4.9994886540 Nb = 3.9998821159 + Exc = -8.979531368263 N = 8.9993707700 + Norm of current diis error: 0.52286E-04 + max. resid. norm for Fia-block= 2.360D-05 for orbital 3a alpha + max. resid. fock norm = 2.360D-05 for orbital 3a alpha + mo-orthogonalization: Cholesky decomposition + Delta Eig. = 0.0008385966 eV + + ENERGY CONVERGED ! + + Evaluating v_xc on big grid + Overall gridpoints after grid construction = 13740 + + current damping : 0.250 + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 11 -75.880560676540 -118.10886446 32.921149013 0.924D-04 0.500D-10 + Na = 4.9999989013 Nb = 3.9999995964 + Exc = -8.979668978887 N = 8.9999984977 + max. resid. norm for Fia-block= 8.321D-06 for orbital 3a beta + max. resid. fock norm = 8.321D-06 for orbital 3a beta + + convergence criteria satisfied after 11 iterations + + + ************************************************************************* + dscf + ************************************************************************* + + + ------------------------------------------ + | total energy = -75.88056067654 | + ------------------------------------------ + : kinetic energy = 75.74900599616 : + : potential energy = -151.62956667270 : + : virial theorem = 1.99826629272 : + : wavefunction norm = 1.00000000000 : + .......................................... + + + : there is no data group $energy + + + : $end is missing + + + orbitals $uhfmo_beta will be written to file beta + + orbitals $uhfmo_alpha will be written to file alpha + + alpha: + + irrep 1a 2a 3a 4a 5a + eigenvalues H -19.33294 -1.44767 -0.96936 -0.82863 -0.81523 + eV -526.0802 -39.3934 -26.3779 -22.5484 -22.1838 + occupation 1.0000 1.0000 1.0000 1.0000 1.0000 + + irrep 6a 7a 8a 9a 10a + eigenvalues H -0.29906 -0.22211 0.16374 0.22168 0.37168 + eV -8.1378 -6.0439 4.4555 6.0323 10.1140 + + beta: + + irrep 1a 2a 3a 4a 5a + eigenvalues H -19.30687 -1.39049 -0.94946 -0.78665 -0.67946 + eV -525.3709 -37.8374 -25.8363 -21.4060 -18.4892 + occupation 1.0000 1.0000 1.0000 1.0000 + + irrep 6a 7a 8a 9a 10a + eigenvalues H -0.28729 -0.21628 0.16487 0.23733 0.46599 + eV -7.8175 -5.8853 4.4863 6.4580 12.6803 + + + _ _ _ + IRREP alpha occ. beta occ. tr(D*D-D) + + + a 5.00000000 4.00000000 -0.25102710 + + ------------------------------------------------- + + sum 5.00000000 4.00000000 -0.25102710 + + 0.75205420 + + + + + ============================================================================== + electrostatic moments + ============================================================================== + + reference point for electrostatic moments: 0.00000 0.00000 0.00000 + + + nuc elec -> total + ------------------------------------------------------------------------------ + charge + ------------------------------------------------------------------------------ + 10.000000 -9.000000 1.000000 + a-b 1.000000 + + ------------------------------------------------------------------------------ + dipole moment + ------------------------------------------------------------------------------ + x 0.000000 -0.000000 -0.000000 + y 0.000000 0.000000 0.000000 + z -5.079052 5.452532 0.373480 + + | dipole moment | = 0.3735 a.u. = 0.9493 debye + + ------------------------------------------------------------------------------ + quadrupole moment + ------------------------------------------------------------------------------ + xx 4.016539 -5.791038 -1.774499 + yy 0.000000 -3.492600 -3.492600 + zz 4.474951 -8.399997 -3.925046 + xy 0.000000 0.000000 0.000000 + xz 0.000000 0.000000 0.000000 + yz 0.000000 -0.000000 -0.000000 + + 1/3 trace= -3.064048 + anisotropy= 1.970245 + + ============================================================================== + +HOMO-LUMO Separation + HOMO : -0.78664890 H = -21.40582 eV + LUMO : -0.67946128 H = -18.48909 eV + HOMO-LUMO gap: 0.10718763 H = +2.91673 eV + + ============================================================================== + + + ------------------------------------------------------------------------ + total cpu-time : 0.27 seconds + total wall-time : 1.78 seconds + ------------------------------------------------------------------------ + + **** dscf : all done **** + + + 2023-01-25 00:18:21.229 + diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/dscf/h2o_uhf/ref_output.json b/turbomoleio/testfiles/outputs/TM_v7.6/dscf/h2o_uhf/ref_output.json new file mode 100644 index 0000000..24217ab --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/dscf/h2o_uhf/ref_output.json @@ -0,0 +1,254 @@ +{ + "@module": "turbomoleio.output.files", + "@class": "ScfOutput", + "@version": "1.3.0", + "dft": { + "@module": "turbomoleio.output.data", + "@class": "DFTData", + "@version": "1.3.0", + "functional": { + "@module": "turbomoleio.output.data", + "@class": "FunctionalData", + "@version": "1.3.0", + "msg": "B-P86 functional\n exchange: LDA + Becke (B88)\n correlation: LDA (VWN) + Perdew (P86)", + "name": "b-p", + "func_type": "GGA", + "xcfun": null + }, + "ri": null, + "spherical_gridsize": 3, + "gridpoints": 302, + "dispersion_correction": null + }, + "scf": { + "@module": "turbomoleio.output.data", + "@class": "ScfData", + "@version": "1.3.0", + "iterations": { + "@module": "turbomoleio.output.data", + "@class": "ScfIterationData", + "@version": "1.3.0", + "energies": [ + -75.709149222343, + -75.816081492466, + -75.857212061739, + -75.874157090013, + -75.879194045962, + -75.880260802113, + -75.880414311673, + -75.880428556505, + -75.880429245802, + -75.880429377768, + -75.88056067654 + ], + "first_index": 1, + "n_steps": 11, + "dampings": [ + 1.0, + 0.95, + 0.8, + 0.65, + 0.5, + 0.35, + 0.2, + 0.1, + 0.15, + 0.2, + 0.25 + ], + "converged": true + }, + "diis": true, + "diis_error_vect": "FDS-SDF", + "conv_tot_en": 1e-07, + "conv_one_e_en": 0.0001, + "virtual_orbital_shift_on": false, + "virtual_orbital_shift_limit": null, + "orbital_characterization": "expanded", + "restart_file": "alpha", + "n_occupied_orbitals": 5 + }, + "energies": { + "@module": "turbomoleio.output.data", + "@class": "ScfEnergiesData", + "@version": "1.3.0", + "total_energy": -75.88056067654, + "kinetic_energy": 75.74900599616, + "potential_energy": -151.6295666727, + "virial_theorem": 1.99826629272, + "wavefunction_norm": 1.0, + "coulomb_energy": null, + "xc_energy": null, + "ts_energy": null, + "free_energy": null, + "sigma0_energy": null + }, + "electrostatic": { + "@module": "turbomoleio.output.data", + "@class": "ElectrostaticMomentsData", + "@version": "1.3.0", + "charge": 1.0, + "unrestricted_electrons": 1.0, + "dipole_vector": [ + -0.0, + 0.0, + 0.37348 + ], + "dipole_norm": 0.3735, + "quadrupole_tensor": [ + [ + -1.774499, + 0.0, + 0.0 + ], + [ + 0.0, + -3.4926, + -0.0 + ], + [ + 0.0, + -0.0, + -3.925046 + ] + ], + "quadrupole_trace": -9.192144, + "quadrupole_anisotropy": 1.970245 + }, + "geometry": { + "@module": "turbomoleio.output.data", + "@class": "GeometryData", + "@version": "1.3.0", + "center_of_mass": [ + 0.0, + 0.0, + -0.60378908 + ], + "center_of_charge": [ + 0.0, + 0.0, + -0.50790525 + ], + "molecule": { + "@module": "pymatgen.core.structure", + "@class": "Molecule", + "charge": 0.0, + "spin_multiplicity": 1, + "sites": [ + { + "name": "O", + "species": [ + { + "element": "O", + "occu": 1 + } + ], + "xyz": [ + 0.0, + 0.0, + -0.38395982917561094 + ], + "properties": {} + }, + { + "name": "H", + "species": [ + { + "element": "H", + "occu": 1 + } + ], + "xyz": [ + 0.7499151287230262, + 0.0, + 0.19197991458780547 + ], + "properties": {} + }, + { + "name": "H", + "species": [ + { + "element": "H", + "occu": 1 + } + ], + "xyz": [ + -0.7499151287230262, + 0.0, + 0.19197991458780547 + ], + "properties": {} + } + ] + } + }, + "basis": { + "@module": "turbomoleio.output.data", + "@class": "BasisData", + "@version": "1.3.0", + "basis_per_specie": { + "o": "def-SV(P)", + "h": "def-SV(P)" + }, + "aux_basis_per_specie": {}, + "number_scf_basis_func": 18, + "number_scf_aux_basis_func": null + }, + "run": { + "@module": "turbomoleio.output.data", + "@class": "RunData", + "@version": "1.3.0", + "host": "frontal3", + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:18:19.500000" + }, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:18:21.229000" + }, + "cpu_time": 0.27, + "wall_time": 1.78 + }, + "tm": { + "@module": "turbomoleio.output.data", + "@class": "TurbomoleData", + "@version": "1.3.0", + "version": "7.6", + "build": null, + "executable": "dscf" + }, + "cosmo": null, + "spin": { + "@module": "turbomoleio.output.data", + "@class": "SpinData", + "@version": "1.3.0", + "unrestricted": true, + "s2": { + "s2": 0.7520542 + } + }, + "integral": { + "@module": "turbomoleio.output.data", + "@class": "IntegralData", + "@version": "1.3.0", + "integral_neglect_threshold": 1.8e-10, + "thize": 1e-05, + "thime": 5 + }, + "smearing": null, + "symmetry": { + "@module": "turbomoleio.output.data", + "@class": "SymmetryData", + "@version": "1.3.0", + "symbol": "c1", + "n_reps": 1, + "reps": [ + "a" + ] + }, + "periodicity": null +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/dscf/h2o_uhf/ref_parser.json b/turbomoleio/testfiles/outputs/TM_v7.6/dscf/h2o_uhf/ref_parser.json new file mode 100644 index 0000000..92b7b02 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/dscf/h2o_uhf/ref_parser.json @@ -0,0 +1,207 @@ +{ + "all_done": true, + "header": { + "executable": "dscf", + "host": "frontal3", + "tm_version": "7.6", + "tm_build": null, + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:18:19.500000" + } + }, + "centers": { + "center_of_mass": [ + 0.0, + 0.0, + -0.60378908 + ], + "center_of_charge": [ + 0.0, + 0.0, + -0.50790525 + ] + }, + "coordinates": { + "coords": [ + [ + 0.0, + 0.0, + -0.72557892 + ], + [ + 1.41713421, + 0.0, + 0.36278946 + ], + [ + -1.41713421, + 0.0, + 0.36278946 + ] + ], + "species": [ + "o", + "h", + "h" + ], + "charges": [ + 8.0, + 1.0, + 1.0 + ], + "isotopes": [ + 0, + 0, + 0 + ] + }, + "basis": { + "basis_per_specie": { + "o": "def-SV(P)", + "h": "def-SV(P)" + }, + "aux_basis_per_specie": {}, + "number_scf_basis_func": 18, + "number_scf_aux_basis_func": null + }, + "symmetry": { + "symbol": "c1", + "n_reps": 1, + "reps": [ + "a" + ] + }, + "cosmo_header": null, + "density_functional_data": { + "functional_msg": "B-P86 functional\n exchange: LDA + Becke (B88)\n correlation: LDA (VWN) + Perdew (P86)", + "functional_name": "b-p", + "functional_type": "GGA", + "xcfun": null, + "spherical_gridsize": 3, + "gridpoints": 302 + }, + "rij_info": null, + "dftd": null, + "pre_scf_run": { + "diis": true, + "diis_error_vect": "FDS-SDF", + "conv_tot_en": 1e-07, + "conv_one_e_en": 0.0001, + "virtual_orbital_shift_on": false, + "virtual_orbital_shift_limit": null, + "orbital_characterization": "expanded", + "restart_file": "alpha", + "n_occupied_orbitals": 5 + }, + "scf_iterations": { + "energies": [ + -75.709149222343, + -75.816081492466, + -75.857212061739, + -75.874157090013, + -75.879194045962, + -75.880260802113, + -75.880414311673, + -75.880428556505, + -75.880429245802, + -75.880429377768, + -75.88056067654 + ], + "first_index": 1, + "n_steps": 11, + "dampings": [ + 1.0, + 0.95, + 0.8, + 0.65, + 0.5, + 0.35, + 0.2, + 0.1, + 0.15, + 0.2, + 0.25 + ], + "converged": true + }, + "scf_energies": { + "total_energy": -75.88056067654, + "kinetic_energy": 75.74900599616, + "potential_energy": -151.6295666727, + "virial_theorem": 1.99826629272, + "wavefunction_norm": 1.0 + }, + "cosmo_results": null, + "electrostatic_moments": { + "unrestricted_electrons": 1.0, + "charge": 1.0, + "dipole": { + "norm": 0.3735, + "moment": [ + -0.0, + 0.0, + 0.37348 + ] + }, + "quadrupole": { + "trace": -9.192144, + "anisotropy": 1.970245, + "moment": [ + [ + -1.774499, + 0.0, + 0.0 + ], + [ + 0.0, + -3.4926, + -0.0 + ], + [ + 0.0, + -0.0, + -3.925046 + ] + ] + } + }, + "timings": { + "cpu_time": 0.27, + "wall_time": 1.78, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:18:21.229000" + } + }, + "s2": { + "s2": 0.7520542 + }, + "is_uhf": true, + "fermi": null, + "integral": { + "integral_neglect_threshold": 1.8e-10, + "thize": 1e-05, + "thime": 5 + }, + "pre_escf_run": null, + "escf_iterations": null, + "escf_gs_total_en": null, + "escf_excitations": null, + "rdgrad_memory": null, + "gradient": null, + "egrad_excited_state": null, + "statpt_info": null, + "relax_info": null, + "relax_gradient_values": null, + "relax_conv_info": null, + "aoforce_numerical_integration": null, + "aoforce_analysis": null, + "mp2_results": { + "energy": null + }, + "riper_scf_energies": null, + "periodicity_data": null +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/dscf/nh3_cosmo_fermi/dscf.log b/turbomoleio/testfiles/outputs/TM_v7.6/dscf/nh3_cosmo_fermi/dscf.log new file mode 100644 index 0000000..102d22d --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/dscf/nh3_cosmo_fermi/dscf.log @@ -0,0 +1,418 @@ + + dscf (frontal3) : TURBOMOLE rev. V7-6 19 Oct 2021 at 10:10:11 compiled Oct 19th 2021 + Copyright (C) 2021 TURBOMOLE GmbH, Karlsruhe + + + 2023-01-25 00:18:36.870 + + + + d s c f - program + + idea & directorship : reinhart ahlrichs + program development : marco haeser + michael baer + dft version : oliver treutler + + + quantum chemistry group + universitaet karlsruhe + germany + + + + *-----------------------------------------------------------------------* + | program will use 1 thread(s) | + *-----------------------------------------------------------------------* + + + +--------------------------------------------------+ + | Atomic coordinate, charge and isotop information | + +--------------------------------------------------+ + + atomic coordinates atom charge isotop + 0.00000000 0.00000000 0.12917062 n 7.000 0 + 1.75612466 0.00000000 -0.59831614 h 1.000 0 + -0.87806233 1.52084857 -0.59831614 h 1.000 0 + -0.87806233 -1.52084857 -0.59831614 h 1.000 0 + + center of nuclear mass : -0.00000000 0.00000000 0.00000000 + center of nuclear charge: -0.00000000 0.00000000 -0.08907541 + + ************************************************************************* + dscf + ************************************************************************* + + + + +--------------------------------------------------+ + | basis set information | + +--------------------------------------------------+ + + we will work with the 1s 3p 5d 7f 9g ... basis set + ...i.e. with spherical basis functions... + + type atoms prim cont basis + --------------------------------------------------------------------------- + n 1 24 14 def-SV(P) [3s2p1d|7s4p1d] + h 3 4 2 def-SV(P) [2s|4s] + --------------------------------------------------------------------------- + total: 4 36 20 + --------------------------------------------------------------------------- + + total number of primitive shells : 16 + total number of contracted shells : 12 + total number of cartesian basis functions : 21 + total number of SCF-basis functions : 20 + + + integral neglect threshold : 0.16E-09 + integral storage threshold THIZE : 0.10E-04 + integral storage threshold THIME : 5 + + + symmetry group of the molecule : c1 + + the group has the following generators : + c1(z) + + 1 symmetry operations found + + there are 1 real representations : a + + maximum number of shells which are related by symmetry : 1 + + ============================================================================== + COSMO switched on + ============================================================================== + COSMO stati: segments per atom: H 32 other atoms 92 + COSMO statistics: nps 168 npspher: 105 + COSMO surface: + number of segments: 168 + area (bohr**2): 172.967551 + volume (bohr**3): 205.077776 + COSMO: check number of disjunct cavities: + + ... OK contiguous cavity found + + ------------------ + density functional + ------------------ + B-P86 functional + exchange: LDA + Becke (B88) + correlation: LDA (VWN) + Perdew (P86) + + iterations will be done with small grid + + spherical integration : Lebedev's spherical grid + spherical gridsize : 3 + i.e. gridpoints : 302 + value for diffuse not defined + radial integration : Chebyshev 2nd kind (scaling 3) + radial gridsize : 3 + integration cells : 4 + partition function : becke + partition sharpness : 3 + + + ------------------------ + nuclear repulsion energy : 12.0340111163 + ------------------------ + + + ----------------- + -S,T+V- integrals + ----------------- + + 1e-integrals will be neglected if expon. factor < 0.159141E-10 + + Difference densities algorithm switched on. + The maximal number of linear combinations of + difference densities is 20 . + + DIIS switched on: error vector is FDS-SDF + Max. Iterations for DIIS is : 4 + DIIS matrix (see manual) + Scaling factor of diagonals : 1.200 + threshold for scaling factor : 0.000 + + scf convergence criterion : increment of total energy < .1000000D-06 + and increment of one-electron energy < .1000000D-03 + + MOs are in ASCII format ! + + + mo occupation : + irrep mo's occupied + a 20 5 + + number of basis functions : 20 + number of occupied orbitals : 5 + + + reading orbital data $scfmo from file mos + orbital characterization : expanded + virtual MOs provided and orthogonalized by Cholesky decomposition + + automatic virtual orbital shift switched on + shift if e(lumo)-e(homo) < 0.10000000 + + + DSCF restart information will be dumped onto file mos + + Fermi smearing switched on + Initial electron temperature: 500.00 + Final electron temperature: 50.00 + Annealing factor: 0.900 + Annealing if HOMO-LUMO gap < 0.2E+00 + Smearing switched off if DE < 0.1E-02 + Overall gridpoints after grid construction = 4369 + + current damping : 0.300 + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 1 -56.339530065681 -100.07607680 31.702535618 0.000D+00 0.159D-09 + Exc = -8.011498791125 N = 9.9991073352 + Ediel = -0.018950975729 + max. resid. norm for Fia-block= 2.210D-01 for orbital 1a + max. resid. fock norm = 1.048D+00 for orbital 14a + Delta Eig. = 41.0161789303 eV + + current damping : 0.250 + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 2 -56.481584020021 -99.486643286 30.971048150 0.473D+00 0.103D-09 + Exc = -7.964028252637 N = 9.9992917164 + Ediel = -0.010862024726 + Norm of current diis error: 0.27670 + max. resid. norm for Fia-block= 7.184D-02 for orbital 2a + max. resid. fock norm = 8.181D-02 for orbital 6a + Delta Eig. = 9.7935957063 eV + -------------------- FON Calculation --------------------- + Fermi level F = -0.22302 + Total number of electrons N = 10.00000 + Occupation numbers calculated for T = 500.00000 + Current HOMO-LUMO gap = 0.37604E+00 + ---------------------------------------------------------- + + current damping : 0.200 + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 3 -56.499803347559 -100.11295250 31.579138037 0.199D+00 0.790D-10 + Exc = -8.075398534807 N = 9.9993897393 + Ediel = -0.011082679359 + Norm of current diis error: 0.12550 + max. resid. norm for Fia-block= 2.756D-02 for orbital 5a + max. resid. fock norm = 2.759D-02 for orbital 5a + Delta Eig. = 3.6547872367 eV + -------------------- FON Calculation --------------------- + Fermi level F = -0.18473 + Total number of electrons N = 10.00000 + Occupation numbers calculated for T = 500.00000 + Current HOMO-LUMO gap = 0.27762E+00 + ---------------------------------------------------------- + + current damping : 0.250 + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 4 -56.502570657774 -99.673147749 31.136565975 0.101D+00 0.725D-10 + Exc = -8.024976945756 N = 9.9994060888 + Ediel = -0.009769970317 + Norm of current diis error: 0.66317E-01 + max. resid. norm for Fia-block= 7.184D-03 for orbital 2a + max. resid. fock norm = 7.216D-03 for orbital 2a + Delta Eig. = 0.3348327064 eV + -------------------- FON Calculation --------------------- + Fermi level F = -0.18787 + Total number of electrons N = 10.00000 + Occupation numbers calculated for T = 500.00000 + Current HOMO-LUMO gap = 0.26856E+00 + ---------------------------------------------------------- + + current damping : 0.300 + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 5 -56.503211322094 -99.809144732 31.271922294 0.966D-02 0.698D-10 + Exc = -8.043188905168 N = 9.9994070642 + Ediel = -0.010061865602 + Norm of current diis error: 0.95995E-02 + max. resid. norm for Fia-block= 1.045D-03 for orbital 2a + max. resid. fock norm = 1.077D-03 for orbital 2a + mo-orthogonalization: Cholesky decomposition + Delta Eig. = 0.0626687573 eV + -------------------- FON Calculation --------------------- + Fermi level F = -0.18824 + Total number of electrons N = 10.00000 + Occupation numbers calculated for T = 500.00000 + Current HOMO-LUMO gap = 0.26685E+00 + ---------------------------------------------------------- + + current damping : 0.150 + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 6 -56.503225254876 -99.828541120 31.291304749 0.791D-03 0.669D-10 + Exc = -8.045816038970 N = 9.9994074366 + Ediel = -0.010111947022 + Norm of current diis error: 0.15186E-02 + max. resid. norm for Fia-block= 1.950D-04 for orbital 2a + max. resid. fock norm = 1.970D-04 for orbital 2a + Delta Eig. = 0.0147728031 eV + -------------------- FON Calculation --------------------- + Fermi level F = -0.18823 + Total number of electrons N = 10.00000 + Occupation numbers calculated for T = 500.00000 + Current HOMO-LUMO gap = 0.26629E+00 + ---------------------------------------------------------- + + current damping : 0.100 + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 7 -56.503225620147 -99.831674966 31.294438230 0.947D-04 0.647D-10 + Exc = -8.046261272361 N = 9.9994075222 + Ediel = -0.010117037506 + Norm of current diis error: 0.14368E-03 + max. resid. norm for Fia-block= 1.882D-05 for orbital 2a + max. resid. fock norm = 2.216D-05 for orbital 6a + Delta Eig. = 0.0018096782 eV + -------------------- FON Calculation --------------------- + Fermi level F = -0.18822 + Total number of electrons N = 10.00000 + Occupation numbers calculated for T = 500.00000 + Current HOMO-LUMO gap = 0.26622E+00 + ---------------------------------------------------------- + + ENERGY CONVERGED ! + + Evaluating v_xc on big grid + Overall gridpoints after grid construction = 17370 + + current damping : 0.150 + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 8 -56.503498199225 -99.831928108 31.294418793 0.634D-05 0.627D-10 + Exc = -8.046569815347 N = 9.9999980190 + Ediel = -0.010117653696 + max. resid. norm for Fia-block= 4.352D-06 for orbital 2a + max. resid. fock norm = 4.569D-06 for orbital 2a + + convergence criteria satisfied after 8 iterations + + + ************************************************************************* + dscf + ************************************************************************* + + + ------------------------------------------ + | total energy = -56.50349819923 | + ------------------------------------------ + : kinetic energy = 56.09160310044 : + : potential energy = -112.59510129966 : + : virial theorem = 1.99271027260 : + : wavefunction norm = 1.00000000000 : + .......................................... + + + : there is no data group $energy + + + : $end is missing + + + orbitals $scfmo will be written to file mos + + irrep 1a 2a 3a 4a 5a + eigenvalues H -13.96499 -0.75969 -0.40366 -0.40362 -0.20847 + eV -380.0098 -20.6724 -10.9841 -10.9830 -5.6727 + occupation 2.0000 2.0000 2.0000 2.0000 2.0000 + + irrep 6a 7a 8a 9a 10a + eigenvalues H 0.05774 0.14082 0.14091 0.50118 0.50119 + eV 1.5713 3.8320 3.8343 13.6378 13.6383 + + ============================================================================== + COSMO RESULTS + ============================================================================== + PARAMETER: + nppa: 1082 + nspa: 92 + nsph: 32 + nps: 168 + npspher: 105 + disex: 10.0000 + disex2: 3600.83 + rsolv [A]: 1.3000 + routf: 0.8500 + phsran: 0.0 + ampran: 0.10E-04 + cavity: closed + epsilon: infinity + refind: 1.300 + fepsi: 1.0000000 + CAVITY VOLUME/AREA [a.u.]: + surface: V1.0, A matrix: V1.0 + area: 172.97 + volume: 205.08 + SCREENING CHARGE: + cosmo : -0.008248 + correction : 0.008009 + total : -0.000239 + ENERGIES [a.u.]: + Total energy = -56.5034981992255 + Total energy + OC corr. = -56.5035468625 + Dielectric energy = -0.0101176537 + Diel. energy + OC corr. = -0.0101663169 + ELEMENT RADIUS [A]: ATOM LIST + n 1.83: 1 + h 1.30: 2-4 + ============================================================================== + + + + ============================================================================== + electrostatic moments + ============================================================================== + + reference point for electrostatic moments: 0.00000 0.00000 0.00000 + + + nuc elec -> total + ------------------------------------------------------------------------------ + charge + ------------------------------------------------------------------------------ + 10.000000 -10.000000 -0.000000 + + ------------------------------------------------------------------------------ + dipole moment + ------------------------------------------------------------------------------ + x -0.000000 -0.000114 -0.000114 + y 0.000000 -0.000076 -0.000076 + z -0.890754 0.048405 -0.842349 + + | dipole moment | = 0.8423 a.u. = 2.1410 debye + + ------------------------------------------------------------------------------ + quadrupole moment + ------------------------------------------------------------------------------ + xx 4.625961 -9.138071 -4.512110 + yy 4.625961 -9.137889 -4.511928 + zz 1.190742 -7.528081 -6.337339 + xy 0.000000 0.000008 0.000008 + xz 0.000000 0.000163 0.000163 + yz 0.000000 -0.000023 -0.000023 + + 1/3 trace= -5.120459 + anisotropy= 1.825320 + + ============================================================================== + +HOMO-LUMO Separation + HOMO : -0.20846672 H = -5.67267 eV + LUMO : 0.05774319 H = +1.57127 eV + HOMO-LUMO gap: 0.26620991 H = +7.24394 eV + + ============================================================================== + + + ------------------------------------------------------------------------ + total cpu-time : 0.37 seconds + total wall-time : 2.35 seconds + ------------------------------------------------------------------------ + + **** dscf : all done **** + + + 2023-01-25 00:18:39.160 + diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/dscf/nh3_cosmo_fermi/ref_output.json b/turbomoleio/testfiles/outputs/TM_v7.6/dscf/nh3_cosmo_fermi/ref_output.json new file mode 100644 index 0000000..f5ad229 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/dscf/nh3_cosmo_fermi/ref_output.json @@ -0,0 +1,322 @@ +{ + "@module": "turbomoleio.output.files", + "@class": "ScfOutput", + "@version": "1.3.0", + "dft": { + "@module": "turbomoleio.output.data", + "@class": "DFTData", + "@version": "1.3.0", + "functional": { + "@module": "turbomoleio.output.data", + "@class": "FunctionalData", + "@version": "1.3.0", + "msg": "B-P86 functional\n exchange: LDA + Becke (B88)\n correlation: LDA (VWN) + Perdew (P86)", + "name": "b-p", + "func_type": "GGA", + "xcfun": null + }, + "ri": null, + "spherical_gridsize": 3, + "gridpoints": 302, + "dispersion_correction": null + }, + "scf": { + "@module": "turbomoleio.output.data", + "@class": "ScfData", + "@version": "1.3.0", + "iterations": { + "@module": "turbomoleio.output.data", + "@class": "ScfIterationData", + "@version": "1.3.0", + "energies": [ + -56.339530065681, + -56.481584020021, + -56.499803347559, + -56.502570657774, + -56.503211322094, + -56.503225254876, + -56.503225620147, + -56.503498199225 + ], + "first_index": 1, + "n_steps": 8, + "dampings": [ + 0.3, + 0.25, + 0.2, + 0.25, + 0.3, + 0.15, + 0.1, + 0.15 + ], + "converged": true + }, + "diis": true, + "diis_error_vect": "FDS-SDF", + "conv_tot_en": 1e-07, + "conv_one_e_en": 0.0001, + "virtual_orbital_shift_on": true, + "virtual_orbital_shift_limit": 0.1, + "orbital_characterization": "expanded", + "restart_file": "mos", + "n_occupied_orbitals": 5 + }, + "energies": { + "@module": "turbomoleio.output.data", + "@class": "ScfEnergiesData", + "@version": "1.3.0", + "total_energy": -56.50349819923, + "kinetic_energy": 56.09160310044, + "potential_energy": -112.59510129966, + "virial_theorem": 1.9927102726, + "wavefunction_norm": 1.0, + "coulomb_energy": null, + "xc_energy": null, + "ts_energy": null, + "free_energy": null, + "sigma0_energy": null + }, + "electrostatic": { + "@module": "turbomoleio.output.data", + "@class": "ElectrostaticMomentsData", + "@version": "1.3.0", + "charge": -0.0, + "unrestricted_electrons": null, + "dipole_vector": [ + -0.000114, + -7.6e-05, + -0.842349 + ], + "dipole_norm": 0.8423, + "quadrupole_tensor": [ + [ + -4.51211, + 8e-06, + 0.000163 + ], + [ + 8e-06, + -4.511928, + -2.3e-05 + ], + [ + 0.000163, + -2.3e-05, + -6.337339 + ] + ], + "quadrupole_trace": -15.361377000000001, + "quadrupole_anisotropy": 1.82532 + }, + "geometry": { + "@module": "turbomoleio.output.data", + "@class": "GeometryData", + "@version": "1.3.0", + "center_of_mass": [ + -0.0, + 0.0, + 0.0 + ], + "center_of_charge": [ + -0.0, + 0.0, + -0.08907541 + ], + "molecule": { + "@module": "pymatgen.core.structure", + "@class": "Molecule", + "charge": 0.0, + "spin_multiplicity": 1, + "sites": [ + { + "name": "N", + "species": [ + { + "element": "N", + "occu": 1 + } + ], + "xyz": [ + 0.0, + 0.0, + 0.06835414842221127 + ], + "properties": {} + }, + { + "name": "H", + "species": [ + { + "element": "H", + "occu": 1 + } + ], + "xyz": [ + 0.9293011495767791, + 0.0, + -0.3166152662034489 + ], + "properties": {} + }, + { + "name": "H", + "species": [ + { + "element": "H", + "occu": 1 + } + ], + "xyz": [ + -0.46465057478838956, + 0.8047984044784159, + -0.3166152662034489 + ], + "properties": {} + }, + { + "name": "H", + "species": [ + { + "element": "H", + "occu": 1 + } + ], + "xyz": [ + -0.46465057478838956, + -0.8047984044784159, + -0.3166152662034489 + ], + "properties": {} + } + ] + } + }, + "basis": { + "@module": "turbomoleio.output.data", + "@class": "BasisData", + "@version": "1.3.0", + "basis_per_specie": { + "n": "def-SV(P)", + "h": "def-SV(P)" + }, + "aux_basis_per_specie": {}, + "number_scf_basis_func": 20, + "number_scf_aux_basis_func": null + }, + "run": { + "@module": "turbomoleio.output.data", + "@class": "RunData", + "@version": "1.3.0", + "host": "frontal3", + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:18:36.870000" + }, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:18:39.160000" + }, + "cpu_time": 0.37, + "wall_time": 2.35 + }, + "tm": { + "@module": "turbomoleio.output.data", + "@class": "TurbomoleData", + "@version": "1.3.0", + "version": "7.6", + "build": null, + "executable": "dscf" + }, + "cosmo": { + "@module": "turbomoleio.output.data", + "@class": "CosmoData", + "@version": "1.3.0", + "info": { + "area": 172.967551, + "volume": 205.077776 + }, + "parameters": { + "nppa": 1082, + "nspa": 92, + "nsph": 32, + "nps": 168, + "npspher": 105, + "disex": 10.0, + "disex2": 3600.83, + "rsolv": 1.3, + "routf": 0.85, + "phsran": 0.0, + "ampran": 1e-05, + "cavity": "closed", + "epsilon": "infinity", + "refind": 1.3, + "fepsi": 1.0 + }, + "screening_charge": { + "cosmo": -0.008248, + "correction": 0.008009, + "total": -0.000239 + }, + "energies": { + "total_energy": -56.5034981992255, + "total_energy_oc_corr": -56.5035468625, + "dielectric_energy": -0.0101176537, + "dielectric_energy_oc_corr": -0.0101663169 + }, + "element_radius": { + "N": { + "radius": 1.83, + "sites": [ + 1 + ] + }, + "H": { + "radius": 1.3, + "sites": [ + 2, + 3, + 4 + ] + } + } + }, + "spin": { + "@module": "turbomoleio.output.data", + "@class": "SpinData", + "@version": "1.3.0", + "unrestricted": false, + "s2": null + }, + "integral": { + "@module": "turbomoleio.output.data", + "@class": "IntegralData", + "@version": "1.3.0", + "integral_neglect_threshold": 1.6e-10, + "thize": 1e-05, + "thime": 5 + }, + "smearing": { + "@module": "turbomoleio.output.data", + "@class": "SmearingData", + "@version": "1.3.0", + "initial_elec_temp": 500.0, + "final_elec_temp": 50.0, + "annealing_factor": 0.9, + "annealing_homo_lumo_gap_limit": 0.2, + "smearing_de_limit": 0.001 + }, + "symmetry": { + "@module": "turbomoleio.output.data", + "@class": "SymmetryData", + "@version": "1.3.0", + "symbol": "c1", + "n_reps": 1, + "reps": [ + "a" + ] + }, + "periodicity": null +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/dscf/nh3_cosmo_fermi/ref_parser.json b/turbomoleio/testfiles/outputs/TM_v7.6/dscf/nh3_cosmo_fermi/ref_parser.json new file mode 100644 index 0000000..8e0cea6 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/dscf/nh3_cosmo_fermi/ref_parser.json @@ -0,0 +1,261 @@ +{ + "all_done": true, + "header": { + "executable": "dscf", + "host": "frontal3", + "tm_version": "7.6", + "tm_build": null, + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:18:36.870000" + } + }, + "centers": { + "center_of_mass": [ + -0.0, + 0.0, + 0.0 + ], + "center_of_charge": [ + -0.0, + 0.0, + -0.08907541 + ] + }, + "coordinates": { + "coords": [ + [ + 0.0, + 0.0, + 0.12917062 + ], + [ + 1.75612466, + 0.0, + -0.59831614 + ], + [ + -0.87806233, + 1.52084857, + -0.59831614 + ], + [ + -0.87806233, + -1.52084857, + -0.59831614 + ] + ], + "species": [ + "n", + "h", + "h", + "h" + ], + "charges": [ + 7.0, + 1.0, + 1.0, + 1.0 + ], + "isotopes": [ + 0, + 0, + 0, + 0 + ] + }, + "basis": { + "basis_per_specie": { + "n": "def-SV(P)", + "h": "def-SV(P)" + }, + "aux_basis_per_specie": {}, + "number_scf_basis_func": 20, + "number_scf_aux_basis_func": null + }, + "symmetry": { + "symbol": "c1", + "n_reps": 1, + "reps": [ + "a" + ] + }, + "cosmo_header": { + "area": 172.967551, + "volume": 205.077776 + }, + "density_functional_data": { + "functional_msg": "B-P86 functional\n exchange: LDA + Becke (B88)\n correlation: LDA (VWN) + Perdew (P86)", + "functional_name": "b-p", + "functional_type": "GGA", + "xcfun": null, + "spherical_gridsize": 3, + "gridpoints": 302 + }, + "rij_info": null, + "dftd": null, + "pre_scf_run": { + "diis": true, + "diis_error_vect": "FDS-SDF", + "conv_tot_en": 1e-07, + "conv_one_e_en": 0.0001, + "virtual_orbital_shift_on": true, + "virtual_orbital_shift_limit": 0.1, + "orbital_characterization": "expanded", + "restart_file": "mos", + "n_occupied_orbitals": 5 + }, + "scf_iterations": { + "energies": [ + -56.339530065681, + -56.481584020021, + -56.499803347559, + -56.502570657774, + -56.503211322094, + -56.503225254876, + -56.503225620147, + -56.503498199225 + ], + "first_index": 1, + "n_steps": 8, + "dampings": [ + 0.3, + 0.25, + 0.2, + 0.25, + 0.3, + 0.15, + 0.1, + 0.15 + ], + "converged": true + }, + "scf_energies": { + "total_energy": -56.50349819923, + "kinetic_energy": 56.09160310044, + "potential_energy": -112.59510129966, + "virial_theorem": 1.9927102726, + "wavefunction_norm": 1.0 + }, + "cosmo_results": { + "parameters": { + "nppa": 1082, + "nspa": 92, + "nsph": 32, + "nps": 168, + "npspher": 105, + "disex": 10.0, + "disex2": 3600.83, + "rsolv": 1.3, + "routf": 0.85, + "phsran": 0.0, + "ampran": 1e-05, + "cavity": "closed", + "epsilon": "infinity", + "refind": 1.3, + "fepsi": 1.0 + }, + "screening_charge": { + "cosmo": -0.008248, + "correction": 0.008009, + "total": -0.000239 + }, + "energies": { + "total_energy": -56.5034981992255, + "total_energy_oc_corr": -56.5035468625, + "dielectric_energy": -0.0101176537, + "dielectric_energy_oc_corr": -0.0101663169 + }, + "element_radius": { + "n": { + "radius": 1.83, + "sites": [ + 1 + ] + }, + "h": { + "radius": 1.3, + "sites": [ + 2, + 3, + 4 + ] + } + } + }, + "electrostatic_moments": { + "unrestricted_electrons": null, + "charge": -0.0, + "dipole": { + "norm": 0.8423, + "moment": [ + -0.000114, + -7.6e-05, + -0.842349 + ] + }, + "quadrupole": { + "trace": -15.361377000000001, + "anisotropy": 1.82532, + "moment": [ + [ + -4.51211, + 8e-06, + 0.000163 + ], + [ + 8e-06, + -4.511928, + -2.3e-05 + ], + [ + 0.000163, + -2.3e-05, + -6.337339 + ] + ] + } + }, + "timings": { + "cpu_time": 0.37, + "wall_time": 2.35, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:18:39.160000" + } + }, + "s2": null, + "is_uhf": false, + "fermi": { + "initial_elec_temp": 500.0, + "final_elec_temp": 50.0, + "annealing_homo_lumo_gap_limit": 0.2, + "smearing_de_limit": 0.001, + "annealing_factor": 0.9 + }, + "integral": { + "integral_neglect_threshold": 1.6e-10, + "thize": 1e-05, + "thime": 5 + }, + "pre_escf_run": null, + "escf_iterations": null, + "escf_gs_total_en": null, + "escf_excitations": null, + "rdgrad_memory": null, + "gradient": null, + "egrad_excited_state": null, + "statpt_info": null, + "relax_info": null, + "relax_gradient_values": null, + "relax_conv_info": null, + "aoforce_numerical_integration": null, + "aoforce_analysis": null, + "mp2_results": { + "energy": null + }, + "riper_scf_energies": null, + "periodicity_data": null +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/dscf/nh3_dftd1/dscf.log b/turbomoleio/testfiles/outputs/TM_v7.6/dscf/nh3_dftd1/dscf.log new file mode 100644 index 0000000..998030d --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/dscf/nh3_dftd1/dscf.log @@ -0,0 +1,333 @@ + + dscf (frontal3) : TURBOMOLE rev. V7-6 19 Oct 2021 at 10:10:11 compiled Oct 19th 2021 + Copyright (C) 2021 TURBOMOLE GmbH, Karlsruhe + + + 2023-01-25 00:18:22.428 + + + + d s c f - program + + idea & directorship : reinhart ahlrichs + program development : marco haeser + michael baer + dft version : oliver treutler + + + quantum chemistry group + universitaet karlsruhe + germany + + + + *-----------------------------------------------------------------------* + | program will use 1 thread(s) | + *-----------------------------------------------------------------------* + + + +--------------------------------------------------+ + | Atomic coordinate, charge and isotop information | + +--------------------------------------------------+ + + atomic coordinates atom charge isotop + 0.00000000 0.00000000 0.54561507 n 7.000 0 + -0.87806233 1.52084857 -0.18187169 h 1.000 0 + -0.87806233 -1.52084857 -0.18187169 h 1.000 0 + 1.75612466 0.00000000 -0.18187169 h 1.000 0 + + center of nuclear mass : 0.00000000 0.00000000 0.41644445 + center of nuclear charge: 0.00000000 0.00000000 0.32736904 + + ************************************************************************* + dscf + ************************************************************************* + + + + +--------------------------------------------------+ + | basis set information | + +--------------------------------------------------+ + + we will work with the 1s 3p 5d 7f 9g ... basis set + ...i.e. with spherical basis functions... + + type atoms prim cont basis + --------------------------------------------------------------------------- + n 1 24 14 def-SV(P) [3s2p1d|7s4p1d] + h 3 4 2 def-SV(P) [2s|4s] + --------------------------------------------------------------------------- + total: 4 36 20 + --------------------------------------------------------------------------- + + total number of primitive shells : 16 + total number of contracted shells : 12 + total number of cartesian basis functions : 21 + total number of SCF-basis functions : 20 + + + integral neglect threshold : 0.16E-09 + integral storage threshold THIZE : 0.10E-04 + integral storage threshold THIME : 5 + + + symmetry group of the molecule : c3v + + the group has the following generators : + c3(z) + mirror plane sigma(xz) + + 6 symmetry operations found + + there are 3 real representations : a1 a2 e + + maximum number of shells which are related by symmetry : 3 + + + ------------------ + density functional + ------------------ + B-P86 functional + exchange: LDA + Becke (B88) + correlation: LDA (VWN) + Perdew (P86) + + iterations will be done with small grid + + spherical integration : Lebedev's spherical grid + spherical gridsize : 3 + i.e. gridpoints : 302 + value for diffuse not defined + radial integration : Chebyshev 2nd kind (scaling 3) + radial gridsize : 3 + integration cells : 2 + partition function : becke + partition sharpness : 3 + + grid rotated due to c3 or c6 main axis + + ------------------------ + nuclear repulsion energy : 12.0340111163 + ------------------------ + + + ----------------- + -S,T+V- integrals + ----------------- + + 1e-integrals will be neglected if expon. factor < 0.159141E-10 + + Difference densities algorithm switched on. + The maximal number of linear combinations of + difference densities is 20 . + + DIIS switched on: error vector is FDS-SDF + Max. Iterations for DIIS is : 4 + DIIS matrix (see manual) + Scaling factor of diagonals : 1.200 + threshold for scaling factor : 0.000 + + scf convergence criterion : increment of total energy < .1000000D-06 + and increment of one-electron energy < .1000000D-03 + + MOs are in ASCII format ! + + + mo occupation : + irrep mo's occupied + a1 8 3 + a2 0 0 + e 6 1 + + number of basis functions : 20 + number of occupied orbitals : 5 + + + reading orbital data $scfmo from file mos + orbital characterization : expanded + virtual MOs provided and orthogonalized by Cholesky decomposition + + automatic virtual orbital shift switched on + shift if e(lumo)-e(homo) < 0.10000000 + + + DSCF restart information will be dumped onto file mos + + Overall gridpoints after grid construction = 1018 + + current damping : 0.300 + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 1 -56.321601056514 -100.05712582 31.701513651 0.000D+00 0.159D-09 + Exc = -8.012520757666 N = 10.003235294 + max. resid. norm for Fia-block= 2.201D-01 for orbital 1a1 + max. resid. fock norm = 9.780D-01 for orbital 4a1 + Delta Eig. = 41.4734907870 eV + + current damping : 0.250 + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 2 -56.472819525478 -99.411593322 30.904762680 0.417D+00 0.102D-09 + Exc = -7.959906798389 N = 10.002513936 + Norm of current diis error: 0.33310 + max. resid. norm for Fia-block= 7.272D-02 for orbital 2a1 + max. resid. fock norm = 8.294D-02 for orbital 4a1 + Delta Eig. = 9.7750264813 eV + + current damping : 0.200 + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 3 -56.491696141354 -100.05200569 31.526298436 0.195D+00 0.797D-10 + Exc = -8.073857511874 N = 10.002242932 + Norm of current diis error: 0.15169 + max. resid. norm for Fia-block= 2.620D-02 for orbital 3a1 + max. resid. fock norm = 2.625D-02 for orbital 3a1 + Delta Eig. = 3.5899306277 eV + + current damping : 0.250 + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 4 -56.494380845537 -99.622959557 31.094567596 0.120D+00 0.719D-10 + Exc = -8.025191175908 N = 10.002267031 + Norm of current diis error: 0.82225E-01 + max. resid. norm for Fia-block= 7.181D-03 for orbital 2a1 + max. resid. fock norm = 7.203D-03 for orbital 2a1 + Delta Eig. = 0.3505445109 eV + + current damping : 0.300 + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 5 -56.495001530423 -99.754179935 31.225167288 0.101D-01 0.692D-10 + Exc = -8.042554004612 N = 10.002269365 + Norm of current diis error: 0.12904E-01 + max. resid. norm for Fia-block= 1.098D-03 for orbital 2a1 + max. resid. fock norm = 1.133D-03 for orbital 2a1 + mo-orthogonalization: Cholesky decomposition + Delta Eig. = 0.0641672965 eV + + current damping : 0.150 + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 6 -56.495016942941 -99.774049223 31.245021164 0.583D-03 0.665D-10 + Exc = -8.045217452019 N = 10.002270390 + Norm of current diis error: 0.22817E-02 + max. resid. norm for Fia-block= 2.242D-04 for orbital 2a1 + max. resid. fock norm = 2.264D-04 for orbital 2a1 + Delta Eig. = 0.0155754749 eV + + current damping : 0.100 + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 7 -56.495017450803 -99.777886594 31.248858027 0.869D-04 0.643D-10 + Exc = -8.045750494083 N = 10.002270858 + Norm of current diis error: 0.19642E-03 + max. resid. norm for Fia-block= 2.132D-05 for orbital 2a1 + max. resid. fock norm = 2.359D-05 for orbital 2a1 + Delta Eig. = 0.0018947548 eV + + ENERGY CONVERGED ! + + Evaluating v_xc on big grid + Overall gridpoints after grid construction = 3542 + + current damping : 0.100 + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 8 -56.494404516578 -99.778150477 31.249734844 0.138D-04 0.626D-10 + Exc = -8.045172886026 N = 10.000020935 + max. resid. norm for Fia-block= 5.150D-06 for orbital 2a1 + max. resid. fock norm = 5.209D-06 for orbital 2a1 + + convergence criteria satisfied after 8 iterations + + + ************************************************************************* + dscf + ************************************************************************* + + + ------------------------------------------ + | total energy = -56.49440451658 | + ------------------------------------------ + : kinetic energy = 56.11677159769 : + : potential energy = -112.61117611426 : + : virial theorem = 1.99331556953 : + : wavefunction norm = 1.00000000000 : + .......................................... + + + : there is no data group $energy + + + : $end is missing + + + orbitals $scfmo will be written to file mos + + irrep 1a1 2a1 3a1 4a1 5a1 + eigenvalues H -13.96838 -0.76647 -0.20104 0.04256 0.67341 + eV -380.1019 -20.8568 -5.4707 1.1581 18.3247 + occupation 2.0000 2.0000 2.0000 + + irrep 6a1 7a1 8a1 + eigenvalues H 0.69640 0.90573 2.22992 + eV 18.9501 24.6463 60.6797 + + irrep 1e 2e 3e 4e 5e + eigenvalues H -0.41014 0.12582 0.49883 0.84019 2.02289 + eV -11.1607 3.4237 13.5740 22.8630 55.0461 + occupation 2 * 2.0000 + + irrep 6e + eigenvalues H 2.55166 + eV 69.4348 + + + + + ============================================================================== + electrostatic moments + ============================================================================== + + reference point for electrostatic moments: 0.00000 0.00000 0.00000 + + + nuc elec -> total + ------------------------------------------------------------------------------ + charge + ------------------------------------------------------------------------------ + 10.000000 -10.000000 -0.000000 + + ------------------------------------------------------------------------------ + dipole moment + ------------------------------------------------------------------------------ + x 0.000000 -0.000000 0.000000 + y 0.000000 0.000000 0.000000 + z 3.273690 -4.010053 -0.736363 + + | dipole moment | = 0.7364 a.u. = 1.8716 debye + + ------------------------------------------------------------------------------ + quadrupole moment + ------------------------------------------------------------------------------ + xx 4.625961 -9.223282 -4.597321 + yy 4.625961 -9.223282 -4.597321 + zz 2.183103 -9.132466 -6.949364 + xy 0.000000 -0.000000 -0.000000 + xz -0.000000 0.000000 -0.000000 + yz 0.000000 -0.000000 -0.000000 + + 1/3 trace= -5.381335 + anisotropy= 2.352042 + + ============================================================================== + +HOMO-LUMO Separation + HOMO : -0.20104159 H = -5.47062 eV + LUMO : 0.04255846 H = +1.15808 eV + HOMO-LUMO gap: 0.24360005 H = +6.62870 eV + + ============================================================================== + + + ------------------------------------------------------------------------ + total cpu-time : 0.13 seconds + total wall-time : 1.08 seconds + ------------------------------------------------------------------------ + + **** dscf : all done **** + + + 2023-01-25 00:18:23.454 + diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/dscf/nh3_dftd1/ref_output.json b/turbomoleio/testfiles/outputs/TM_v7.6/dscf/nh3_dftd1/ref_output.json new file mode 100644 index 0000000..5600e66 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/dscf/nh3_dftd1/ref_output.json @@ -0,0 +1,263 @@ +{ + "@module": "turbomoleio.output.files", + "@class": "ScfOutput", + "@version": "1.3.0", + "dft": { + "@module": "turbomoleio.output.data", + "@class": "DFTData", + "@version": "1.3.0", + "functional": { + "@module": "turbomoleio.output.data", + "@class": "FunctionalData", + "@version": "1.3.0", + "msg": "B-P86 functional\n exchange: LDA + Becke (B88)\n correlation: LDA (VWN) + Perdew (P86)", + "name": "b-p", + "func_type": "GGA", + "xcfun": null + }, + "ri": null, + "spherical_gridsize": 3, + "gridpoints": 302, + "dispersion_correction": null + }, + "scf": { + "@module": "turbomoleio.output.data", + "@class": "ScfData", + "@version": "1.3.0", + "iterations": { + "@module": "turbomoleio.output.data", + "@class": "ScfIterationData", + "@version": "1.3.0", + "energies": [ + -56.321601056514, + -56.472819525478, + -56.491696141354, + -56.494380845537, + -56.495001530423, + -56.495016942941, + -56.495017450803, + -56.494404516578 + ], + "first_index": 1, + "n_steps": 8, + "dampings": [ + 0.3, + 0.25, + 0.2, + 0.25, + 0.3, + 0.15, + 0.1, + 0.1 + ], + "converged": true + }, + "diis": true, + "diis_error_vect": "FDS-SDF", + "conv_tot_en": 1e-07, + "conv_one_e_en": 0.0001, + "virtual_orbital_shift_on": true, + "virtual_orbital_shift_limit": 0.1, + "orbital_characterization": "expanded", + "restart_file": "mos", + "n_occupied_orbitals": 5 + }, + "energies": { + "@module": "turbomoleio.output.data", + "@class": "ScfEnergiesData", + "@version": "1.3.0", + "total_energy": -56.49440451658, + "kinetic_energy": 56.11677159769, + "potential_energy": -112.61117611426, + "virial_theorem": 1.99331556953, + "wavefunction_norm": 1.0, + "coulomb_energy": null, + "xc_energy": null, + "ts_energy": null, + "free_energy": null, + "sigma0_energy": null + }, + "electrostatic": { + "@module": "turbomoleio.output.data", + "@class": "ElectrostaticMomentsData", + "@version": "1.3.0", + "charge": -0.0, + "unrestricted_electrons": null, + "dipole_vector": [ + 0.0, + 0.0, + -0.736363 + ], + "dipole_norm": 0.7364, + "quadrupole_tensor": [ + [ + -4.597321, + -0.0, + -0.0 + ], + [ + -0.0, + -4.597321, + -0.0 + ], + [ + -0.0, + -0.0, + -6.949364 + ] + ], + "quadrupole_trace": -16.144005, + "quadrupole_anisotropy": 2.352042 + }, + "geometry": { + "@module": "turbomoleio.output.data", + "@class": "GeometryData", + "@version": "1.3.0", + "center_of_mass": [ + 0.0, + 0.0, + 0.41644445 + ], + "center_of_charge": [ + 0.0, + 0.0, + 0.32736904 + ], + "molecule": { + "@module": "pymatgen.core.structure", + "@class": "Molecule", + "charge": 0.0, + "spin_multiplicity": 1, + "sites": [ + { + "name": "N", + "species": [ + { + "element": "N", + "occu": 1 + } + ], + "xyz": [ + 0.0, + 0.0, + 0.28872706096924505 + ], + "properties": {} + }, + { + "name": "H", + "species": [ + { + "element": "H", + "occu": 1 + } + ], + "xyz": [ + -0.46465057478838956, + 0.8047984044784159, + -0.09624235365641504 + ], + "properties": {} + }, + { + "name": "H", + "species": [ + { + "element": "H", + "occu": 1 + } + ], + "xyz": [ + -0.46465057478838956, + -0.8047984044784159, + -0.09624235365641504 + ], + "properties": {} + }, + { + "name": "H", + "species": [ + { + "element": "H", + "occu": 1 + } + ], + "xyz": [ + 0.9293011495767791, + 0.0, + -0.09624235365641504 + ], + "properties": {} + } + ] + } + }, + "basis": { + "@module": "turbomoleio.output.data", + "@class": "BasisData", + "@version": "1.3.0", + "basis_per_specie": { + "n": "def-SV(P)", + "h": "def-SV(P)" + }, + "aux_basis_per_specie": {}, + "number_scf_basis_func": 20, + "number_scf_aux_basis_func": null + }, + "run": { + "@module": "turbomoleio.output.data", + "@class": "RunData", + "@version": "1.3.0", + "host": "frontal3", + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:18:22.428000" + }, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:18:23.454000" + }, + "cpu_time": 0.13, + "wall_time": 1.08 + }, + "tm": { + "@module": "turbomoleio.output.data", + "@class": "TurbomoleData", + "@version": "1.3.0", + "version": "7.6", + "build": null, + "executable": "dscf" + }, + "cosmo": null, + "spin": { + "@module": "turbomoleio.output.data", + "@class": "SpinData", + "@version": "1.3.0", + "unrestricted": false, + "s2": null + }, + "integral": { + "@module": "turbomoleio.output.data", + "@class": "IntegralData", + "@version": "1.3.0", + "integral_neglect_threshold": 1.6e-10, + "thize": 1e-05, + "thime": 5 + }, + "smearing": null, + "symmetry": { + "@module": "turbomoleio.output.data", + "@class": "SymmetryData", + "@version": "1.3.0", + "symbol": "c3v", + "n_reps": 3, + "reps": [ + "a1", + "a2", + "e" + ] + }, + "periodicity": null +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/dscf/nh3_dftd1/ref_parser.json b/turbomoleio/testfiles/outputs/TM_v7.6/dscf/nh3_dftd1/ref_parser.json new file mode 100644 index 0000000..04101b1 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/dscf/nh3_dftd1/ref_parser.json @@ -0,0 +1,209 @@ +{ + "all_done": true, + "header": { + "executable": "dscf", + "host": "frontal3", + "tm_version": "7.6", + "tm_build": null, + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:18:22.428000" + } + }, + "centers": { + "center_of_mass": [ + 0.0, + 0.0, + 0.41644445 + ], + "center_of_charge": [ + 0.0, + 0.0, + 0.32736904 + ] + }, + "coordinates": { + "coords": [ + [ + 0.0, + 0.0, + 0.54561507 + ], + [ + -0.87806233, + 1.52084857, + -0.18187169 + ], + [ + -0.87806233, + -1.52084857, + -0.18187169 + ], + [ + 1.75612466, + 0.0, + -0.18187169 + ] + ], + "species": [ + "n", + "h", + "h", + "h" + ], + "charges": [ + 7.0, + 1.0, + 1.0, + 1.0 + ], + "isotopes": [ + 0, + 0, + 0, + 0 + ] + }, + "basis": { + "basis_per_specie": { + "n": "def-SV(P)", + "h": "def-SV(P)" + }, + "aux_basis_per_specie": {}, + "number_scf_basis_func": 20, + "number_scf_aux_basis_func": null + }, + "symmetry": { + "symbol": "c3v", + "n_reps": 3, + "reps": [ + "a1", + "a2", + "e" + ] + }, + "cosmo_header": null, + "density_functional_data": { + "functional_msg": "B-P86 functional\n exchange: LDA + Becke (B88)\n correlation: LDA (VWN) + Perdew (P86)", + "functional_name": "b-p", + "functional_type": "GGA", + "xcfun": null, + "spherical_gridsize": 3, + "gridpoints": 302 + }, + "rij_info": null, + "dftd": null, + "pre_scf_run": { + "diis": true, + "diis_error_vect": "FDS-SDF", + "conv_tot_en": 1e-07, + "conv_one_e_en": 0.0001, + "virtual_orbital_shift_on": true, + "virtual_orbital_shift_limit": 0.1, + "orbital_characterization": "expanded", + "restart_file": "mos", + "n_occupied_orbitals": 5 + }, + "scf_iterations": { + "energies": [ + -56.321601056514, + -56.472819525478, + -56.491696141354, + -56.494380845537, + -56.495001530423, + -56.495016942941, + -56.495017450803, + -56.494404516578 + ], + "first_index": 1, + "n_steps": 8, + "dampings": [ + 0.3, + 0.25, + 0.2, + 0.25, + 0.3, + 0.15, + 0.1, + 0.1 + ], + "converged": true + }, + "scf_energies": { + "total_energy": -56.49440451658, + "kinetic_energy": 56.11677159769, + "potential_energy": -112.61117611426, + "virial_theorem": 1.99331556953, + "wavefunction_norm": 1.0 + }, + "cosmo_results": null, + "electrostatic_moments": { + "unrestricted_electrons": null, + "charge": -0.0, + "dipole": { + "norm": 0.7364, + "moment": [ + 0.0, + 0.0, + -0.736363 + ] + }, + "quadrupole": { + "trace": -16.144005, + "anisotropy": 2.352042, + "moment": [ + [ + -4.597321, + -0.0, + -0.0 + ], + [ + -0.0, + -4.597321, + -0.0 + ], + [ + -0.0, + -0.0, + -6.949364 + ] + ] + } + }, + "timings": { + "cpu_time": 0.13, + "wall_time": 1.08, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:18:23.454000" + } + }, + "s2": null, + "is_uhf": false, + "fermi": null, + "integral": { + "integral_neglect_threshold": 1.6e-10, + "thize": 1e-05, + "thime": 5 + }, + "pre_escf_run": null, + "escf_iterations": null, + "escf_gs_total_en": null, + "escf_excitations": null, + "rdgrad_memory": null, + "gradient": null, + "egrad_excited_state": null, + "statpt_info": null, + "relax_info": null, + "relax_gradient_values": null, + "relax_conv_info": null, + "aoforce_numerical_integration": null, + "aoforce_analysis": null, + "mp2_results": { + "energy": null + }, + "riper_scf_energies": null, + "periodicity_data": null +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/egrad/h2o_sym/egrad.log b/turbomoleio/testfiles/outputs/TM_v7.6/egrad/h2o_sym/egrad.log new file mode 100644 index 0000000..d3acb2f --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/egrad/h2o_sym/egrad.log @@ -0,0 +1,811 @@ + + egrad (frontal3) : TURBOMOLE rev. V7-6 19 Oct 2021 at 10:10:11 compiled Oct 19th 2021 + Copyright (C) 2021 TURBOMOLE GmbH, Karlsruhe + + + 2023-01-25 00:18:44.173 + + + + + e g r a d + + TURBOMOLE GmbH + + + integral direct evaluation of excited state + and polarizability gradients + and first-order nonadiabatic couplings + + + + references (see also programs escf, dscf and ridft) + + review + F. Furche and D. Rappoport, + "Density functional methods for excited states: + equilibrium structure and electronic spectra", + ch. III of "Computational Photochemistry", ed. by + M. Olivucci, vol. 16 of "Theoretical and Computational + Chemistry", Elsevier, Amsterdam, 2005. + + nonorthonormal Krylov space methods + F. Furche, B. T. Krull, B. D. Nguyen, J. Kwon, + J. Chem. Phys. 144 (2016), 174105. + + RI-J method + D. Rappoport and F. Furche, + J. Chem. Phys. 122 (2005), 064105. + + Lagrangian method, implementation, benchmarks + F. Furche and R. Ahlrichs, + J. Chem. Phys. 117 (2002), 7433; + J. Chem. Phys. 121 (2004), 12772 (E). + + Polarizability derivatives, Raman intensities + D. Rappoport and F. Furche, + J. Chem. Phys. 126 (2007), 201104. + + First-order nonadiabatic couplings + R. Send and F. Furche, + J. Chem. Phys. 132 (2010), 044107. + + + + + + +--------------------------------------------------+ + | Atomic coordinate, charge and isotop information | + +--------------------------------------------------+ + + atomic coordinates atom charge isotop + 0.00000000 0.00000000 -0.72557892 o 8.000 0 + 1.41713421 0.00000000 0.36278946 h 1.000 0 + -1.41713421 0.00000000 0.36278946 h 1.000 0 + + center of nuclear mass : 0.00000000 0.00000000 -0.60378908 + center of nuclear charge: 0.00000000 0.00000000 -0.50790524 + + ************************************************************************* + ridft_escf + ************************************************************************* + + + + +--------------------------------------------------+ + | basis set information | + +--------------------------------------------------+ + + we will work with the 1s 3p 5d 7f 9g ... basis set + ...i.e. with spherical basis functions... + + type atoms prim cont basis + --------------------------------------------------------------------------- + o 1 24 14 def-SV(P) [3s2p1d|7s4p1d] + h 2 4 2 def-SV(P) [2s|4s] + --------------------------------------------------------------------------- + total: 3 32 18 + --------------------------------------------------------------------------- + + total number of primitive shells : 16 + total number of contracted shells : 10 + total number of cartesian basis functions : 19 + total number of SCF-basis functions : 18 + + + residuum convergence criterium : 0.10E-04 + + + integral neglect threshold : 0.33E-10 + integral storage threshold THIZE : 0.10E-04 + integral storage threshold THIME : 5 + + RPA SINGLET-EXCITATION-CALCULATION + + FOUND DFT-FLAG ! + + + FOUND RI-J FLAG ! + + + AUXILIARY BASIS SET information: + + we will work with the 1s 3p 5d 7f 9g ... basis set + ...i.e. with spherical basis functions... + + type atoms prim cont basis + --------------------------------------------------------------------------- + o 1 39 37 def-SV(P) [6s3p3d1f|8s3p3d1f] + h 2 10 5 def-SV(P) [2s1p|4s2p] + --------------------------------------------------------------------------- + total: 3 59 47 + --------------------------------------------------------------------------- + + total number of primitive shells : 21 + total number of contracted shells : 19 + total number of cartesian basis functions : 53 + total number of SCF-basis functions : 47 + + + symmetry group of the molecule : c2v + + the group has the following generators : + c2(z) + mirror plane sigma(xz) + + 4 symmetry operations found + + there are 4 real representations : a1 a2 b1 b2 + + maximum number of shells which are related by symmetry : 2 + + IRREP of excited state : a1 + + + determining totally symmetric integral contributions + - equivalent to irreducible tensor elements - + which can be formed within each triple of representations : + + representation triple contributions + + a1 a1 a1 1 + a2 a2 a1 1 + b1 b1 a1 1 + b2 b2 a1 1 + + mo occupation : + irrep mo's occupied + a1 9 3 + a2 1 0 + b1 5 1 + b2 3 1 + + number of basis functions : 18 + number of occupied orbitals : 5 + + + ------------------ + density functional + ------------------ + B-P86 functional + exchange: LDA + Becke (B88) + correlation: LDA (VWN) + Perdew (P86) + + iterations will be done with small grid + + spherical integration : Lebedev's spherical grid + spherical gridsize : 3 + i.e. gridpoints : 302 + value for diffuse not defined + radial integration : Chebyshev 2nd kind (scaling 3) + radial gridsize : 3 + integration cells : 2 + partition function : becke + partition sharpness : 3 + + + ---------------------- + RI - INFORMATION + ---------------------- + + biggest AO integral is expected to be 4.776656448 + + Threshold for integral neglect (rithr2): 0.33E-10 + Threshold for integral neglect (rithr1): 0.33E-10 + + Contributions to RI integral batches: + neglected integral batches: 16 + direct contribution: 0 + memory contribution: 39 + Core memory available (ricore) 500 MiB + Core memory needed for (P|Q) and Cholesky 1 MiB + Core memory used for integrals 1 MiB + + **************************************** + Memory allocated for RIDFT 1 MiB + **************************************** + + MOs are in ASCII format ! + + + reading orbital data $scfmo from file mos + orbital characterization : scfconv=7 + preparing DFT numerical integration .... + Overall gridpoints after grid construction = 1098 + + Calculating ground state density on molecular grid + + Integral of ground state density: N = 9.999336695690088 + + + + number of non-frozen orbitals : 18 + number of non-frozen occupied orbitals : 5 + + + + ------------------- + excitation vector + ------------------- + + + dimension of super-tensorspace: 1 + + IRREP tensor space dimension number of roots + + a1 24 3 + + maximum number of Davidson iterations set to 35 + + + machine precision: 2.22D-16 + + + logfile sing_a1 will be constructed + + + Nonorthonormal Krylov Space Iteration + + + total number of roots to be determined: 3 + + + maximum core memory set to 500 MB, + corresponding to 151353 vectors in CAO basis + + + maximum number of simultaneously treated vectors (including degeneracy): 6 + + + Iteration IRREP Converged Max. Euclidean + roots residual norm + + 1 a1 0 1.939690916493864D-01 + + 2 a1 0 2.980248193796169D-02 + + 3 a1 0 1.306174998529588D-03 + + 4 a1 3 7.306197245305287D-06 + + + converged! + + + Switching to fine grid + + preparing DFT numerical integration .... + Overall gridpoints after grid construction = 3891 + + Calculating ground state density on molecular grid + + Integral of ground state density: N = 9.999998376409447 + + + + Iteration IRREP Converged Max. Euclidean + roots residual norm + + 5 a1 0 2.319401871552961D-04 + + + NOTE: Residual norms are larger than 1.00D-05 due to mgrid option! + + Eigenpairs written on logfile sing_a1 + + + + IRREP Vector Eigenvalue Euclidean residual norm + + a1 1 1.269529911945098D-01 1.435476517396013D-04 + 2 4.033097284828305D-01 2.319401871552961D-04 + 3 8.990615877289541D-01 1.825065158750371D-04 + + + + + + + Selection rules for point group c2v + + + Subduction with respect to c2v : + + Polar vector representation: a1, b1, b2 + + Axial vector representation: a2, b1, b2 + + Symmetric second rank tensor representation: a1, a2, b1, b2 + + + + + Ground state + + + Total energy: -76.34300618247001 + + Charge: + + elec nuc total + + -10.000000 10.000000 -0.000000 + + + Electric dipole moment: + + elec nuc total + + x 0.000000 0.000000 0.000000 Norm: 0.833024 + y 0.000000 0.000000 0.000000 + z 5.912076 -5.079052 0.833024 Norm / debye: 2.117351 + + + Electric quadrupole moment: + + elec nuc total + + xx -7.255308 4.016539 -3.238769 + yy -5.263827 0.000000 -5.263827 1/3*trace: -4.613667 + zz -9.813356 4.474951 -5.338406 + xy 0.000000 0.000000 0.000000 + xz 0.000000 0.000000 0.000000 Anisotropy: 2.063359 + yz 0.000000 0.000000 0.000000 + + + + ============================================================================== + + I R R E P a1 + + ============================================================================== + + + Excitation is electric dipole allowed + + Excitation is magnetic dipole forbidden + + Excitation is electric quadrupole allowed + + + + + 1 singlet a1 excitation + + + Total energy: -75.98670154989486 + + Excitation energy: 0.3563046325751461 + + Excitation energy / eV: 9.695546514208587 + + Excitation energy / nm: 127.8775196682028 + + Excitation energy / cm^(-1): 78199.82765112937 + + + Oscillator strength: + + velocity representation: 0.1689002024191568 + + length representation: 0.7846609560737540E-01 + + mixed representation: 0.1151214116970714 + + + Rotatory strength: + + velocity representation: 0.000000000000000 + + velocity rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + length representation: 0.000000000000000 + + length rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 3 a1 -8.44 4 a1 0.92 99.2 + + + Change of electron number: + + -0.000000 + + + Electric transition dipole moment (velocity rep.): + + x 0.000000 Norm: 0.843238 + y 0.000000 + z 0.843238 Norm / debye: 2.143312 + + + Electric transition dipole moment (length rep.): + + x 0.000000 Norm: 0.574746 + y 0.000000 + z 0.574746 Norm / debye: 1.460870 + + + Magnetic transition dipole moment / i: + + x 0.000000 Norm: 0.000000 + y 0.000000 + z 0.000000 Norm / Bohr mag.: 0.000000 + + + Electric quadrupole transition moment: + + xx 0.558280 + yy 0.090691 1/3*trace: 0.145317 + zz -0.213020 + xy 0.000000 + xz 0.000000 Anisotropy: 0.672973 + yz 0.000000 + + + + + 2 singlet a1 excitation + + + Total energy: -75.70793947063351 + + Excitation energy: 0.6350667118365050 + + Excitation energy / eV: 17.28105189016237 + + Excitation energy / nm: 71.74577380735093 + + Excitation energy / cm^(-1): 139381.0320501802 + + + Oscillator strength: + + velocity representation: 0.1206675243515526 + + length representation: 0.1188028214929186 + + mixed representation: 0.1197315428595569 + + + Rotatory strength: + + velocity representation: 0.000000000000000 + + velocity rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + length representation: 0.000000000000000 + + length rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 1 b1 -13.01 2 b1 3.09 96.1 + + + Change of electron number: + + 0.000000 + + + Electric transition dipole moment (velocity rep.): + + x 0.000000 Norm: 0.533865 + y 0.000000 + z 0.533865 Norm / debye: 1.356959 + + + Electric transition dipole moment (length rep.): + + x 0.000000 Norm: 0.529724 + y 0.000000 + z 0.529724 Norm / debye: 1.346433 + + + Magnetic transition dipole moment / i: + + x 0.000000 Norm: 0.000000 + y 0.000000 + z 0.000000 Norm / Bohr mag.: 0.000000 + + + Electric quadrupole transition moment: + + xx 1.819326 + yy 0.168271 1/3*trace: 0.667268 + zz 0.014207 + xy 0.000000 + xz 0.000000 Anisotropy: 1.733230 + yz 0.000000 + + + + + 3 singlet a1 excitation + + + Total energy: -75.39481760010416 + + Excitation energy: 0.9481885823658467 + + Excitation energy / eV: 25.80153515862773 + + Excitation energy / nm: 48.05304926401228 + + Excitation energy / cm^(-1): 208103.3389487008 + + + Oscillator strength: + + velocity representation: 0.3576166987678396E-02 + + length representation: 0.5705805333778516E-02 + + mixed representation: 0.4517179725534289E-02 + + + Rotatory strength: + + velocity representation: 0.000000000000000 + + velocity rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + length representation: 0.000000000000000 + + length rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 3 a1 -8.44 5 a1 17.22 75.2 + 2 a1 -24.72 4 a1 0.92 22.4 + + + Change of electron number: + + 0.000000 + + + Electric transition dipole moment (velocity rep.): + + x 0.000000 Norm: 0.075215 + y 0.000000 + z -0.075215 Norm / debye: 0.191180 + + + Electric transition dipole moment (length rep.): + + x 0.000000 Norm: 0.095007 + y 0.000000 + z -0.095007 Norm / debye: 0.241486 + + + Magnetic transition dipole moment / i: + + x 0.000000 Norm: 0.000000 + y 0.000000 + z 0.000000 Norm / Bohr mag.: 0.000000 + + + Electric quadrupole transition moment: + + xx -0.044793 + yy -0.151784 1/3*trace: -0.205741 + zz -0.420645 + xy 0.000000 + xz 0.000000 Anisotropy: 0.335409 + yz 0.000000 + + SUMMARY OF EXCITATION ENERGIES AND DIPOLE OSCILLATOR STRENGTHS (velocity/length): + + ----------------------------------------------------------------------------------------------- + | Exc. | energy (Eh) | energy (eV) | energy (cm-1) | energy (nm) | Osc.(vel) | Osc.(len) | + ----------------------------------------------------------------------------------------------- + | 1 a1 | 0.356305 | 9.69554 | 78199.828 | 127.878 | 0.16890 | 0.07847 | + | 2 a1 | 0.635067 | 17.28105 | 139381.032 | 71.746 | 0.12067 | 0.11880 | + | 3 a1 | 0.948189 | 25.80153 | 208103.339 | 48.053 | 0.00358 | 0.00571 | + ----------------------------------------------------------------------------------------------- + Transitions are magnetic dipole forbidden in irrep a1 + + + + IRREP tensor space dimension number of roots + + a1 24 3 + + + Data group $exopt missing or empty + Default state chosen: 3 + + + + Excited state no. 3 chosen for optimization + + + IRREP tensor space dimension number of roots + + a1 24 1 + + ---------------------- + CPKS right-hand side + ---------------------- + + + IRREP tensor space dimension number of roots + + a1 24 1 + + ---------------- + CPKS equations + ---------------- + + + logfile dipl_a1 will be constructed + + Switching to coarse grid + + preparing DFT numerical integration .... + Overall gridpoints after grid construction = 1098 + + + Nonorthonormal Krylov Space Iteration + + + total number of roots to be determined: 1 + + + maximum core memory set to 500 MB, + corresponding to 151353 vectors in CAO basis + + + maximum number of simultaneously treated vectors (including degeneracy): 1 + + + Iteration IRREP Converged Max. Euclidean + roots residual norm + + 1 a1 0 1.184607663538645D-01 + + 2 a1 0 9.418872154697264D-03 + + 3 a1 0 8.558064401716414D-04 + + 4 a1 0 5.410901863758168D-05 + + 5 a1 1 1.400640266278741D-06 + + + converged! + + + Switching to fine grid + + preparing DFT numerical integration .... + Overall gridpoints after grid construction = 3891 + + Iteration IRREP Converged Max. Euclidean + roots residual norm + + 6 a1 0 4.718628404915467D-05 + + + NOTE: Residual norms are larger than 1.00D-05 due to mgrid option! + + Eigenpairs written on logfile dipl_a1 + + + + IRREP Vector Frequency Euclidean residual norm + + a1 1 0.000000000000000D+00 4.718628404915467D-05 + + + + ------------------- + relaxed densities + ------------------- + + + ---------------------------------------- + S+T+V CONTRIBUTIONS TO ENERGY GRADIENT + ---------------------------------------- + + 1e-integral 1st. derivatives will be neglected if expon. factor < 0.100000E-10 + + + ----------------------------------------------- + TWO ELECTRON CONTRIBUTIONS TO ENERGY GRADIENT + ----------------------------------------------- + + setting up bound for integral derivative estimation + + increment for numerical differentiation : 0.00050000 + + biggest AO integral is expected to be 4.776656448 + biggest cartesian 1st derivative AO integral is expected to be 8.648821438 + Integrated ground state density : 9.999998376409447 + + + ------------------------------------------------ + cartesian gradient of the energy (hartree/bohr) + ------------------------------------------------ + + ATOM 1 o 2 h 3 h +dE/dx 0.0000000D+00 -0.3672901D+00 0.3672901D+00 +dE/dy 0.0000000D+00 0.0000000D+00 0.0000000D+00 +dE/dz 0.1311139D+00 -0.6555727D-01 -0.6555727D-01 + + resulting FORCE (fx,fy,fz) = (0.000D+00,0.000D+00,-.642D-06) + resulting MOMENT (mx,my,mz) = (0.000D+00,0.000D+00,0.000D+00) + + + ********************************************************************** + |maximum component of gradient| : 0.36729006 (atom 2 h ) + gradient norm : 0.54368220 + ********************************************************************** + + exx = -1.040999 eyy = 0.000000 ezz = -0.142700 + eyz = 0.000000 exz = 0.000000 exy = 0.000000 + + + : data group $grad is missing + + *** cartesian gradients written onto *** + + + + ============================================================================== + electrostatic moments + ============================================================================== + + reference point for electrostatic moments: 0.00000 0.00000 0.00000 + + + nuc gs,e -> gs,tot excit -> total + ------------------------------------------------------------------------------ + charge + ------------------------------------------------------------------------------ + 10.000000 -10.000000 -0.000000 0.000000 -0.000000 + + ------------------------------------------------------------------------------ + dipole moment + ------------------------------------------------------------------------------ + x 0.000000 0.000000 0.000000 0.000000 0.000000 + y 0.000000 0.000000 0.000000 0.000000 0.000000 + z -5.079052 5.912076 0.833024 -0.840749 -0.007725 + + | dipole moment | = 0.0077 a.u. = 0.0196 debye + + ------------------------------------------------------------------------------ + quadrupole moment + ------------------------------------------------------------------------------ + xx 4.016539 -7.255308 -3.238769 -1.781190 -5.019959 + yy 0.000000 -5.263827 -5.263827 -0.850431 -6.114257 + zz 4.474951 -9.813356 -5.338406 0.159517 -5.178888 + xy 0.000000 0.000000 0.000000 0.000000 0.000000 + xz 0.000000 -0.000000 -0.000000 0.000000 -0.000000 + yz 0.000000 0.000000 0.000000 0.000000 0.000000 + + 1/3 trace= -5.437702 + anisotropy= 1.024125 + + ============================================================================== + + + + ------------------------------------------------------------------------ + total cpu-time : 0.24 seconds + total wall-time : 2.38 seconds + ------------------------------------------------------------------------ + + **** egrad : all done **** + + + 2023-01-25 00:18:46.480 + diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/egrad/h2o_sym/ref_output.json b/turbomoleio/testfiles/outputs/TM_v7.6/egrad/h2o_sym/ref_output.json new file mode 100644 index 0000000..b51ef70 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/egrad/h2o_sym/ref_output.json @@ -0,0 +1,437 @@ +{ + "@module": "turbomoleio.output.files", + "@class": "EgradOutput", + "@version": "1.3.0", + "gradients": [ + [ + 0.0, + 0.0, + 0.1311139 + ], + [ + -0.3672901, + 0.0, + -0.06555727 + ], + [ + 0.3672901, + 0.0, + -0.06555727 + ] + ], + "dielectric": [ + [ + -1.040999, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + -0.1427 + ] + ], + "dft": { + "@module": "turbomoleio.output.data", + "@class": "DFTData", + "@version": "1.3.0", + "functional": { + "@module": "turbomoleio.output.data", + "@class": "FunctionalData", + "@version": "1.3.0", + "msg": "B-P86 functional\n exchange: LDA + Becke (B88)\n correlation: LDA (VWN) + Perdew (P86)", + "name": "b-p", + "func_type": "GGA", + "xcfun": null + }, + "ri": { + "@module": "turbomoleio.output.data", + "@class": "RiData", + "@version": "1.3.0", + "ricore": 500, + "marij": false, + "rij_memory": 1, + "rik": false + }, + "spherical_gridsize": 3, + "gridpoints": 302, + "dispersion_correction": null + }, + "escf": { + "@module": "turbomoleio.output.data", + "@class": "EscfData", + "@version": "1.3.0", + "calc_type": "RPA SINGLET-EXCITATION", + "iterations": { + "@module": "turbomoleio.output.data", + "@class": "EscfIterationData", + "@version": "1.3.0", + "steps": [ + [ + [ + "a1", + 0, + 0.1939690916493864 + ] + ], + [ + [ + "a1", + 0, + 0.02980248193796169 + ] + ], + [ + [ + "a1", + 0, + 0.001306174998529588 + ] + ], + [ + [ + "a1", + 3, + 7.306197245305287e-06 + ] + ] + ], + "converged": true + }, + "residuum_convergence_criterium": 1e-05, + "n_occupied_orbitals": 5, + "orbital_characterization": "scfconv=7", + "max_davidson_iter": 35, + "machine_precision": 2.22e-16, + "max_core_mem": 500.0, + "max_cao_basis_vectors": 151353, + "max_treated_vectors": 6, + "irrep_data": { + "a1": { + "tensor_space_dim": 24, + "n_roots": 3 + } + }, + "gs_tot_en": -76.34300618247, + "excitations": { + "a1": [ + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -75.98670154989486, + "osc_stre": 0.0784660956073754, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 3, + "irrep": "a1", + "energy": -8.44, + "spin": null + }, + "virt_orb": { + "index": 4, + "irrep": "a1", + "energy": 0.92, + "spin": null + }, + "coeff": 99.2 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + 0.574746 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.435951, + "anisotropy": 0.672973, + "moment": [ + [ + 0.55828, + 0.0, + 0.0 + ], + [ + 0.0, + 0.090691, + 0.0 + ], + [ + 0.0, + 0.0, + -0.21302 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -75.7079394706335, + "osc_stre": 0.1188028214929186, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b1", + "energy": -13.01, + "spin": null + }, + "virt_orb": { + "index": 2, + "irrep": "b1", + "energy": 3.09, + "spin": null + }, + "coeff": 96.1 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + 0.529724 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 2.001804, + "anisotropy": 1.73323, + "moment": [ + [ + 1.819326, + 0.0, + 0.0 + ], + [ + 0.0, + 0.168271, + 0.0 + ], + [ + 0.0, + 0.0, + 0.014207 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -75.39481760010416, + "osc_stre": 0.005705805333778516, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 3, + "irrep": "a1", + "energy": -8.44, + "spin": null + }, + "virt_orb": { + "index": 5, + "irrep": "a1", + "energy": 17.22, + "spin": null + }, + "coeff": 75.2 + }, + { + "occ_orb": { + "index": 2, + "irrep": "a1", + "energy": -24.72, + "spin": null + }, + "virt_orb": { + "index": 4, + "irrep": "a1", + "energy": 0.92, + "spin": null + }, + "coeff": 22.4 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + -0.095007 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": -0.6172230000000001, + "anisotropy": 0.335409, + "moment": [ + [ + -0.044793, + 0.0, + 0.0 + ], + [ + 0.0, + -0.151784, + 0.0 + ], + [ + 0.0, + 0.0, + -0.420645 + ] + ] + } + } + ] + } + ] + } + }, + "geometry": { + "@module": "turbomoleio.output.data", + "@class": "GeometryData", + "@version": "1.3.0", + "center_of_mass": [ + 0.0, + 0.0, + -0.60378908 + ], + "center_of_charge": [ + 0.0, + 0.0, + -0.50790524 + ], + "molecule": { + "@module": "pymatgen.core.structure", + "@class": "Molecule", + "charge": 0.0, + "spin_multiplicity": 1, + "sites": [ + { + "name": "O", + "species": [ + { + "element": "O", + "occu": 1 + } + ], + "xyz": [ + 0.0, + 0.0, + -0.38395982917561094 + ], + "properties": {} + }, + { + "name": "H", + "species": [ + { + "element": "H", + "occu": 1 + } + ], + "xyz": [ + 0.7499151287230262, + 0.0, + 0.19197991458780547 + ], + "properties": {} + }, + { + "name": "H", + "species": [ + { + "element": "H", + "occu": 1 + } + ], + "xyz": [ + -0.7499151287230262, + 0.0, + 0.19197991458780547 + ], + "properties": {} + } + ] + } + }, + "basis": { + "@module": "turbomoleio.output.data", + "@class": "BasisData", + "@version": "1.3.0", + "basis_per_specie": { + "o": "def-SV(P)", + "h": "def-SV(P)" + }, + "aux_basis_per_specie": {}, + "number_scf_basis_func": 18, + "number_scf_aux_basis_func": 47 + }, + "run": { + "@module": "turbomoleio.output.data", + "@class": "RunData", + "@version": "1.3.0", + "host": "frontal3", + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:18:44.173000" + }, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:18:46.480000" + }, + "cpu_time": 0.24, + "wall_time": 2.38 + }, + "tm": { + "@module": "turbomoleio.output.data", + "@class": "TurbomoleData", + "@version": "1.3.0", + "version": "7.6", + "build": null, + "executable": "egrad" + }, + "cosmo": null, + "integral": { + "@module": "turbomoleio.output.data", + "@class": "IntegralData", + "@version": "1.3.0", + "integral_neglect_threshold": 3.3e-11, + "thize": 1e-05, + "thime": 5 + }, + "ex_state": 3 +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/egrad/h2o_sym/ref_parser.json b/turbomoleio/testfiles/outputs/TM_v7.6/egrad/h2o_sym/ref_parser.json new file mode 100644 index 0000000..c9c2c36 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/egrad/h2o_sym/ref_parser.json @@ -0,0 +1,442 @@ +{ + "all_done": true, + "header": { + "executable": "egrad", + "host": "frontal3", + "tm_version": "7.6", + "tm_build": null, + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:18:44.173000" + } + }, + "centers": { + "center_of_mass": [ + 0.0, + 0.0, + -0.60378908 + ], + "center_of_charge": [ + 0.0, + 0.0, + -0.50790524 + ] + }, + "coordinates": { + "coords": [ + [ + 0.0, + 0.0, + -0.72557892 + ], + [ + 1.41713421, + 0.0, + 0.36278946 + ], + [ + -1.41713421, + 0.0, + 0.36278946 + ] + ], + "species": [ + "o", + "h", + "h" + ], + "charges": [ + 8.0, + 1.0, + 1.0 + ], + "isotopes": [ + 0, + 0, + 0 + ] + }, + "basis": { + "basis_per_specie": { + "o": "def-SV(P)", + "h": "def-SV(P)" + }, + "aux_basis_per_specie": {}, + "number_scf_basis_func": 18, + "number_scf_aux_basis_func": 47 + }, + "symmetry": { + "symbol": "c2v", + "n_reps": 4, + "reps": [ + "a1", + "a2", + "b1", + "b2" + ] + }, + "cosmo_header": null, + "density_functional_data": { + "functional_msg": "B-P86 functional\n exchange: LDA + Becke (B88)\n correlation: LDA (VWN) + Perdew (P86)", + "functional_name": "b-p", + "functional_type": "GGA", + "xcfun": null, + "spherical_gridsize": 3, + "gridpoints": 302 + }, + "rij_info": { + "marij": false, + "rij_memory": 1, + "rik": false, + "ricore": 500 + }, + "dftd": null, + "pre_scf_run": null, + "scf_iterations": null, + "scf_energies": null, + "cosmo_results": null, + "electrostatic_moments": { + "unrestricted_electrons": null, + "charge": -0.0, + "dipole": { + "norm": 0.0077, + "moment": [ + 0.0, + 0.0, + -0.007725 + ] + }, + "quadrupole": { + "trace": -16.313105999999998, + "anisotropy": 1.024125, + "moment": [ + [ + -5.019959, + 0.0, + -0.0 + ], + [ + 0.0, + -6.114257, + 0.0 + ], + [ + -0.0, + 0.0, + -5.178888 + ] + ] + } + }, + "timings": { + "cpu_time": 0.24, + "wall_time": 2.38, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:18:46.480000" + } + }, + "s2": null, + "is_uhf": false, + "fermi": null, + "integral": { + "integral_neglect_threshold": 3.3e-11, + "thize": 1e-05, + "thime": 5 + }, + "pre_escf_run": { + "calc_type": "RPA SINGLET-EXCITATION", + "residuum_convergence_criterium": 1e-05, + "n_occupied_orbitals": 5, + "orbital_characterization": "scfconv=7", + "max_davidson_iter": 35, + "machine_precision": 2.22e-16, + "max_core_mem": 500.0, + "max_cao_basis_vectors": 151353, + "max_treated_vectors": 6, + "irrep_data": { + "a1": { + "tensor_space_dim": 24, + "n_roots": 3 + } + } + }, + "escf_iterations": { + "steps": [ + [ + [ + "a1", + 0, + 0.1939690916493864 + ] + ], + [ + [ + "a1", + 0, + 0.02980248193796169 + ] + ], + [ + [ + "a1", + 0, + 0.001306174998529588 + ] + ], + [ + [ + "a1", + 3, + 7.306197245305287e-06 + ] + ] + ], + "converged": true + }, + "escf_gs_total_en": -76.34300618247, + "escf_excitations": { + "a1": [ + { + "tot_en": -75.98670154989486, + "osc_stre": 0.0784660956073754, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 3, + "irrep": "a1", + "energy": -8.44, + "spin": null + }, + "virt_orb": { + "index": 4, + "irrep": "a1", + "energy": 0.92, + "spin": null + }, + "coeff": 99.2 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + 0.574746 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.435951, + "anisotropy": 0.672973, + "moment": [ + [ + 0.55828, + 0.0, + 0.0 + ], + [ + 0.0, + 0.090691, + 0.0 + ], + [ + 0.0, + 0.0, + -0.21302 + ] + ] + } + } + ] + }, + { + "tot_en": -75.7079394706335, + "osc_stre": 0.1188028214929186, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b1", + "energy": -13.01, + "spin": null + }, + "virt_orb": { + "index": 2, + "irrep": "b1", + "energy": 3.09, + "spin": null + }, + "coeff": 96.1 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + 0.529724 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 2.001804, + "anisotropy": 1.73323, + "moment": [ + [ + 1.819326, + 0.0, + 0.0 + ], + [ + 0.0, + 0.168271, + 0.0 + ], + [ + 0.0, + 0.0, + 0.014207 + ] + ] + } + } + ] + }, + { + "tot_en": -75.39481760010416, + "osc_stre": 0.005705805333778516, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 3, + "irrep": "a1", + "energy": -8.44, + "spin": null + }, + "virt_orb": { + "index": 5, + "irrep": "a1", + "energy": 17.22, + "spin": null + }, + "coeff": 75.2 + }, + { + "occ_orb": { + "index": 2, + "irrep": "a1", + "energy": -24.72, + "spin": null + }, + "virt_orb": { + "index": 4, + "irrep": "a1", + "energy": 0.92, + "spin": null + }, + "coeff": 22.4 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + -0.095007 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": -0.6172230000000001, + "anisotropy": 0.335409, + "moment": [ + [ + -0.044793, + 0.0, + 0.0 + ], + [ + 0.0, + -0.151784, + 0.0 + ], + [ + 0.0, + 0.0, + -0.420645 + ] + ] + } + } + ] + } + ] + }, + "rdgrad_memory": null, + "gradient": { + "gradients": [ + [ + 0.0, + 0.0, + 0.1311139 + ], + [ + -0.3672901, + 0.0, + -0.06555727 + ], + [ + 0.3672901, + 0.0, + -0.06555727 + ] + ], + "dielectric": [ + [ + -1.040999, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + -0.1427 + ] + ] + }, + "egrad_excited_state": { + "index": 3, + "default": true + }, + "statpt_info": null, + "relax_info": null, + "relax_gradient_values": null, + "relax_conv_info": null, + "aoforce_numerical_integration": null, + "aoforce_analysis": null, + "mp2_results": { + "energy": null + }, + "riper_scf_energies": null, + "periodicity_data": null +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/egrad/h3cbr_nosym/egrad.log b/turbomoleio/testfiles/outputs/TM_v7.6/egrad/h3cbr_nosym/egrad.log new file mode 100644 index 0000000..432ded1 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/egrad/h3cbr_nosym/egrad.log @@ -0,0 +1,1349 @@ + + egrad (frontal3) : TURBOMOLE rev. V7-6 19 Oct 2021 at 10:10:11 compiled Oct 19th 2021 + Copyright (C) 2021 TURBOMOLE GmbH, Karlsruhe + + + 2023-01-25 00:18:51.113 + + + + + e g r a d + + TURBOMOLE GmbH + + + integral direct evaluation of excited state + and polarizability gradients + and first-order nonadiabatic couplings + + + + references (see also programs escf, dscf and ridft) + + review + F. Furche and D. Rappoport, + "Density functional methods for excited states: + equilibrium structure and electronic spectra", + ch. III of "Computational Photochemistry", ed. by + M. Olivucci, vol. 16 of "Theoretical and Computational + Chemistry", Elsevier, Amsterdam, 2005. + + nonorthonormal Krylov space methods + F. Furche, B. T. Krull, B. D. Nguyen, J. Kwon, + J. Chem. Phys. 144 (2016), 174105. + + RI-J method + D. Rappoport and F. Furche, + J. Chem. Phys. 122 (2005), 064105. + + Lagrangian method, implementation, benchmarks + F. Furche and R. Ahlrichs, + J. Chem. Phys. 117 (2002), 7433; + J. Chem. Phys. 121 (2004), 12772 (E). + + Polarizability derivatives, Raman intensities + D. Rappoport and F. Furche, + J. Chem. Phys. 126 (2007), 201104. + + First-order nonadiabatic couplings + R. Send and F. Furche, + J. Chem. Phys. 132 (2010), 044107. + + + + + + +--------------------------------------------------+ + | Atomic coordinate, charge and isotop information | + +--------------------------------------------------+ + + atomic coordinates atom charge isotop + 0.00000000 0.00000000 -3.04112594 c 6.000 0 + 0.97212284 1.68376616 -3.67601852 h 1.000 0 + 0.97212284 -1.68376616 -3.67601852 h 1.000 0 + -1.94424569 0.00000000 -3.67601852 h 1.000 0 + 0.00000000 0.00000000 0.59622031 br 35.000 0 + + center of nuclear mass : 0.00000000 0.00000000 0.00000000 + center of nuclear charge: 0.00000000 0.00000000 -0.19107046 + + ************************************************************************* + dscf_escf + ************************************************************************* + + + + +--------------------------------------------------+ + | basis set information | + +--------------------------------------------------+ + + we will work with the 1s 3p 5d 7f 9g ... basis set + ...i.e. with spherical basis functions... + + type atoms prim cont basis + --------------------------------------------------------------------------- + c 1 24 14 def-SV(P) [3s2p1d|7s4p1d] + h 3 4 2 def-SV(P) [2s|4s] + br 1 74 32 def-SV(P) [5s4p3d|14s10p6d] + --------------------------------------------------------------------------- + total: 5 110 52 + --------------------------------------------------------------------------- + + total number of primitive shells : 46 + total number of contracted shells : 24 + total number of cartesian basis functions : 56 + total number of SCF-basis functions : 52 + + + residuum convergence criterium : 0.10E-04 + + + integral neglect threshold : 0.33E-10 + integral storage threshold THIZE : 0.10E-04 + integral storage threshold THIME : 5 + + RPA SINGLET-EXCITATION-CALCULATION + + FOUND DFT-FLAG ! + + + symmetry group of the molecule : c1 + + the group has the following generators : + c1(z) + + 1 symmetry operations found + + there are 1 real representations : a + + maximum number of shells which are related by symmetry : 1 + + IRREP of excited state : a + + + determining totally symmetric integral contributions + - equivalent to irreducible tensor elements - + which can be formed within each triple of representations : + + representation triple contributions + + a a a 1 + + mo occupation : + irrep mo's occupied + a 52 22 + + number of basis functions : 52 + number of occupied orbitals : 22 + + + ------------------ + density functional + ------------------ + B-P86 functional + exchange: LDA + Becke (B88) + correlation: LDA (VWN) + Perdew (P86) + + iterations will be done with small grid + + spherical integration : Lebedev's spherical grid + spherical gridsize : 3 + i.e. gridpoints : 302 + value for diffuse not defined + radial integration : Chebyshev 2nd kind (scaling 3) + radial gridsize : 3 + integration cells : 5 + partition function : becke + partition sharpness : 3 + + + biggest AO integral is expected to be 21.668154127 + MOs are in ASCII format ! + + + reading orbital data $scfmo from file mos + orbital characterization : scfconv=7 + preparing DFT numerical integration .... + Overall gridpoints after grid construction = 7239 + + Calculating ground state density on molecular grid + + Integral of ground state density: N = 43.99958460687699 + + + + number of non-frozen orbitals : 52 + number of non-frozen occupied orbitals : 22 + + + + ------------------- + excitation vector + ------------------- + + + dimension of super-tensorspace: 1 + + IRREP tensor space dimension number of roots + + a 660 10 + + maximum number of Davidson iterations set to 35 + + + machine precision: 2.22D-16 + + + logfile sing_a will be constructed + + + Nonorthonormal Krylov Space Iteration + + + total number of roots to be determined: 10 + + + maximum core memory set to 500 MB, + corresponding to 19574 vectors in CAO basis + + + maximum number of simultaneously treated vectors (including degeneracy): 18 + + + Iteration IRREP Converged Max. Euclidean + roots residual norm + + 1 a 0 1.104386619886686D-01 + + 2 a 0 1.902291898698895D-02 + + 3 a 1 1.947444159125122D-03 + + 4 a 3 3.571762018184652D-04 + + 5 a 7 4.812820204236434D-05 + + 6 a 10 8.137193887116020D-06 + + + converged! + + + Switching to fine grid + + preparing DFT numerical integration .... + Overall gridpoints after grid construction = 26176 + + Calculating ground state density on molecular grid + + Integral of ground state density: N = 43.99999821247488 + + + + Iteration IRREP Converged Max. Euclidean + roots residual norm + + 7 a 0 6.542429715608330D-05 + + + NOTE: Residual norms are larger than 1.00D-05 due to mgrid option! + + Eigenpairs written on logfile sing_a + + + + IRREP Vector Eigenvalue Euclidean residual norm + + a 1 5.269336246055234D-02 2.645478730425349D-05 + 2 5.270288009901038D-02 2.216277891016276D-05 + 3 8.897711088151687D-02 5.991406726155704D-05 + 4 8.898823387628767D-02 3.602868681480302D-05 + 5 1.143532453863001D-01 3.563924925936307D-05 + 6 1.153715401869876D-01 6.214614830637916D-05 + 7 1.153764242650014D-01 2.181209067902979D-05 + 8 1.167699081899149D-01 5.751062360370067D-05 + 9 1.509435187985302D-01 5.321605818187117D-05 + 10 1.509626845321396D-01 6.542429715608330D-05 + + + + + + + Selection rules for point group c1 + + + Subduction with respect to c1 : + + Polar vector representation: a + + Axial vector representation: a + + Symmetric second rank tensor representation: a + + + + + Ground state + + + Total energy: -2614.005271607000 + + Charge: + + elec nuc total + + -44.000000 44.000000 -0.000000 + + + Electric dipole moment: + + elec nuc total + + x 0.000330 0.000000 0.000330 Norm: 0.683946 + y 0.000000 0.000000 0.000000 + z 7.723155 -8.407100 -0.683946 Norm / debye: 1.738430 + + + Electric quadrupole moment: + + elec nuc total + + xx -24.580334 5.670137 -18.910197 + yy -24.579829 5.670137 -18.909692 1/3*trace: -17.982284 + zz -124.598736 108.471772 -16.126964 + xy 0.000000 0.000000 0.000000 + xz -0.000361 0.000000 -0.000361 Anisotropy: 2.782981 + yz 0.000000 0.000000 0.000000 + + + + ============================================================================== + + I R R E P a + + ============================================================================== + + + Excitation is electric dipole allowed + + Excitation is magnetic dipole allowed + + Excitation is electric quadrupole allowed + + + + + 1 singlet a excitation + + + Total energy: -2613.775721258578 + + Excitation energy: 0.2295503484217620 + + Excitation energy / eV: 6.246385471866101 + + Excitation energy / nm: 198.4895817987809 + + Excitation energy / cm^(-1): 50380.47794692255 + + + Oscillator strength: + + velocity representation: 0.1874376708800732E-03 + + length representation: 0.7973690669882280E-05 + + mixed representation: 0.3862082055225426E-04 + + + Rotatory strength: + + velocity representation: 0.3443918222886711E-15 + + velocity rep. / 10^(-40)erg*cm^3: 0.2224937045077348E-10 + + length representation: -0.4217176920994932E-15 + + length rep. / 10^(-40)erg*cm^3: -0.2724499407335523E-10 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 22 a -6.50 23 a -0.66 99.6 + + + Change of electron number: + + 0.000000 + + + Electric transition dipole moment (velocity rep.): + + x -0.034997 Norm: 0.034997 + y 0.000000 + z -0.000188 Norm / debye: 0.088955 + + + Electric transition dipole moment (length rep.): + + x 0.007213 Norm: 0.007218 + y -0.000000 + z -0.000285 Norm / debye: 0.018347 + + + Magnetic transition dipole moment / i: + + x 0.000000 Norm: 0.001695 + y 0.001695 + z -0.000000 Norm / Bohr mag.: 0.464440 + + + Electric quadrupole transition moment: + + xx 0.091857 + yy -0.091224 1/3*trace: 0.000528 + zz 0.000951 + xy 0.000000 + xz -0.068729 Anisotropy: 0.198269 + yz 0.000000 + + + + + 2 singlet a excitation + + + Total energy: -2613.775700528467 + + Excitation energy: 0.2295710785334476 + + Excitation energy / eV: 6.246949567147826 + + Excitation energy / nm: 198.4716583250342 + + Excitation energy / cm^(-1): 50385.02768052912 + + + Oscillator strength: + + velocity representation: 0.1866474457253048E-03 + + length representation: 0.8181619354680342E-05 + + mixed representation: 0.3907784992099492E-04 + + + Rotatory strength: + + velocity representation: -0.1027297157898285E-14 + + velocity rep. / 10^(-40)erg*cm^3: -0.6636834428068115E-10 + + length representation: -0.1092918310414970E-14 + + length rep. / 10^(-40)erg*cm^3: -0.7060778679138806E-10 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 21 a -6.50 23 a -0.66 99.6 + + + Change of electron number: + + -0.000000 + + + Electric transition dipole moment (velocity rep.): + + x 0.000000 Norm: 0.034922 + y 0.034922 + z 0.000000 Norm / debye: 0.088763 + + + Electric transition dipole moment (length rep.): + + x -0.000000 Norm: 0.007312 + y -0.007312 + z 0.000000 Norm / debye: 0.018584 + + + Magnetic transition dipole moment / i: + + x 0.001693 Norm: 0.001693 + y -0.000000 + z 0.000000 Norm / Bohr mag.: 0.463986 + + + Electric quadrupole transition moment: + + xx -0.000000 + yy 0.000000 1/3*trace: 0.000000 + zz 0.000000 + xy 0.091425 + xz 0.000000 Anisotropy: 0.198657 + yz 0.069255 + + + + + 3 singlet a excitation + + + Total energy: -2613.706981293913 + + Excitation energy: 0.2982903130869604 + + Excitation energy / eV: 8.116895883082616 + + Excitation energy / nm: 152.7483483740115 + + Excitation energy / cm^(-1): 65467.15630614802 + + + Oscillator strength: + + velocity representation: 0.1073027892341213E-03 + + length representation: 0.7777246408912506E-05 + + mixed representation: 0.2888502825444619E-04 + + + Rotatory strength: + + velocity representation: 0.8229512014034795E-15 + + velocity rep. / 10^(-40)erg*cm^3: 0.5316661127797466E-10 + + length representation: 0.1138403339045834E-14 + + length rep. / 10^(-40)erg*cm^3: 0.7354633871531807E-10 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 22 a -6.50 24 a 1.60 99.8 + + + Change of electron number: + + 0.000000 + + + Electric transition dipole moment (velocity rep.): + + x -0.023222 Norm: 0.023229 + y -0.000000 + z -0.000562 Norm / debye: 0.059043 + + + Electric transition dipole moment (length rep.): + + x -0.006253 Norm: 0.006254 + y -0.000000 + z -0.000061 Norm / debye: 0.015896 + + + Magnetic transition dipole moment / i: + + x 0.000000 Norm: 0.002314 + y -0.002314 + z 0.000000 Norm / Bohr mag.: 0.634145 + + + Electric quadrupole transition moment: + + xx -0.292201 + yy 0.291387 1/3*trace: -0.000338 + zz -0.000200 + xy 0.000000 + xz -1.084304 Anisotropy: 1.944884 + yz -0.000000 + + + + + 4 singlet a excitation + + + Total energy: -2613.706962649916 + + Excitation energy: 0.2983089570835707 + + Excitation energy / eV: 8.117403212260571 + + Excitation energy / nm: 152.7388017626152 + + Excitation energy / cm^(-1): 65471.24819041884 + + + Oscillator strength: + + velocity representation: 0.1075867217524565E-03 + + length representation: 0.7954267519213227E-05 + + mixed representation: 0.2925360774903150E-04 + + + Rotatory strength: + + velocity representation: -0.3361349873813562E-14 + + velocity rep. / 10^(-40)erg*cm^3: -0.2171593914748967E-09 + + length representation: -0.3198724574684410E-14 + + length rep. / 10^(-40)erg*cm^3: -0.2066530138816464E-09 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 21 a -6.50 24 a 1.60 99.8 + + + Change of electron number: + + -0.000000 + + + Electric transition dipole moment (velocity rep.): + + x 0.000000 Norm: 0.023259 + y -0.023259 + z -0.000000 Norm / debye: 0.059119 + + + Electric transition dipole moment (length rep.): + + x 0.000000 Norm: 0.006324 + y -0.006324 + z -0.000000 Norm / debye: 0.016075 + + + Magnetic transition dipole moment / i: + + x 0.002316 Norm: 0.002316 + y 0.000000 + z 0.000000 Norm / Bohr mag.: 0.634699 + + + Electric quadrupole transition moment: + + xx 0.000000 + yy -0.000000 1/3*trace: 0.000000 + zz 0.000000 + xy 0.291982 + xz 0.000000 Anisotropy: 1.945663 + yz -1.084719 + + + + + 5 singlet a excitation + + + Total energy: -2613.667110040014 + + Excitation energy: 0.3381615669858125 + + Excitation energy / eV: 9.201848368718936 + + Excitation energy / nm: 134.7384123693501 + + Excitation energy / cm^(-1): 74217.88503114450 + + + Oscillator strength: + + velocity representation: 0.8533283871364345E-06 + + length representation: 0.3451235507532225E-06 + + mixed representation: 0.5426819721780398E-06 + + + Rotatory strength: + + velocity representation: 0.4091426574037228E-14 + + velocity rep. / 10^(-40)erg*cm^3: 0.2643258626553275E-09 + + length representation: 0.3915471215385321E-14 + + length rep. / 10^(-40)erg*cm^3: 0.2529582990139252E-09 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 22 a -6.50 25 a 2.71 51.1 + 21 a -6.50 26 a 2.71 48.9 + + + Change of electron number: + + -0.000000 + + + Electric transition dipole moment (velocity rep.): + + x -0.000000 Norm: 0.001946 + y -0.001946 + z 0.000000 Norm / debye: 0.004945 + + + Electric transition dipole moment (length rep.): + + x -0.000000 Norm: 0.001237 + y -0.001237 + z 0.000000 Norm / debye: 0.003145 + + + Magnetic transition dipole moment / i: + + x -0.000026 Norm: 0.001177 + y 0.000000 + z 0.001177 Norm / Bohr mag.: 0.322678 + + + Electric quadrupole transition moment: + + xx 0.000000 + yy -0.000000 1/3*trace: -0.000000 + zz -0.000000 + xy -0.000342 + xz 0.000000 Anisotropy: 0.021206 + yz 0.012238 + + + + + 6 singlet a excitation + + + Total energy: -2613.665607743472 + + Excitation energy: 0.3396638635283236 + + Excitation energy / eV: 9.242727955102028 + + Excitation energy / nm: 134.1424789399200 + + Excitation energy / cm^(-1): 74547.60101001403 + + + Oscillator strength: + + velocity representation: 0.5018095102488236E-02 + + length representation: 0.2845517535934603E-02 + + mixed representation: 0.3778753045384154E-02 + + + Rotatory strength: + + velocity representation: -0.4824862741497650E-15 + + velocity rep. / 10^(-40)erg*cm^3: -0.3117093715998118E-10 + + length representation: 0.2242401648677876E-16 + + length rep. / 10^(-40)erg*cm^3: 0.1448699468219065E-11 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 22 a -6.50 26 a 2.71 50.3 + 21 a -6.50 25 a 2.71 49.5 + + + Change of electron number: + + -0.000000 + + + Electric transition dipole moment (velocity rep.): + + x 0.148854 Norm: 0.148864 + y 0.000000 + z 0.001771 Norm / debye: 0.378378 + + + Electric transition dipole moment (length rep.): + + x 0.112087 Norm: 0.112099 + y 0.000000 + z 0.001634 Norm / debye: 0.284929 + + + Magnetic transition dipole moment / i: + + x 0.000000 Norm: 0.002253 + y -0.002253 + z 0.000000 Norm / Bohr mag.: 0.617611 + + + Electric quadrupole transition moment: + + xx -0.057449 + yy 0.056006 1/3*trace: -0.002577 + zz -0.006287 + xy 0.000000 + xz -1.101749 Anisotropy: 1.910822 + yz -0.000000 + + + + + 7 singlet a excitation + + + Total energy: -2613.665600553972 + + Excitation energy: 0.3396710530277807 + + Excitation energy / eV: 9.242923591420018 + + Excitation energy / nm: 134.1396396715428 + + Excitation energy / cm^(-1): 74549.17892275228 + + + Oscillator strength: + + velocity representation: 0.4993404807574566E-02 + + length representation: 0.2815298074725997E-02 + + mixed representation: 0.3749389675812880E-02 + + + Rotatory strength: + + velocity representation: 0.2271534556007381E-15 + + velocity rep. / 10^(-40)erg*cm^3: 0.1467520729513095E-10 + + length representation: -0.1914477435208092E-15 + + length rep. / 10^(-40)erg*cm^3: -0.1236844632155271E-10 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 21 a -6.50 26 a 2.71 51.0 + 22 a -6.50 25 a 2.71 48.8 + + + Change of electron number: + + -0.000000 + + + Electric transition dipole moment (velocity rep.): + + x 0.000000 Norm: 0.148496 + y -0.148496 + z -0.000000 Norm / debye: 0.377442 + + + Electric transition dipole moment (length rep.): + + x 0.000000 Norm: 0.111501 + y -0.111501 + z -0.000000 Norm / debye: 0.283409 + + + Magnetic transition dipole moment / i: + + x -0.002254 Norm: 0.002254 + y -0.000000 + z -0.000013 Norm / Bohr mag.: 0.617649 + + + Electric quadrupole transition moment: + + xx -0.000000 + yy 0.000000 1/3*trace: 0.000000 + zz 0.000000 + xy -0.056153 + xz -0.000000 Anisotropy: 1.906516 + yz 1.099294 + + + + + 8 singlet a excitation + + + Total energy: -2613.663555484773 + + Excitation energy: 0.3417161222270833 + + Excitation energy / eV: 9.298572779597306 + + Excitation energy / nm: 133.3368538863421 + + Excitation energy / cm^(-1): 74998.01973002516 + + + Oscillator strength: + + velocity representation: 0.3548900870746251E-01 + + length representation: 0.3127875409605586E-01 + + mixed representation: 0.3331743494423607E-01 + + + Rotatory strength: + + velocity representation: -0.3734965632042972E-14 + + velocity rep. / 10^(-40)erg*cm^3: -0.2412967689417897E-09 + + length representation: -0.3507404109756671E-14 + + length rep. / 10^(-40)erg*cm^3: -0.2265951985733564E-09 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 21 a -6.50 25 a 2.71 48.9 + 22 a -6.50 26 a 2.71 48.1 + + + Change of electron number: + + 0.000000 + + + Electric transition dipole moment (velocity rep.): + + x 0.000598 Norm: 0.394693 + y 0.000000 + z -0.394693 Norm / debye: 1.003218 + + + Electric transition dipole moment (length rep.): + + x 0.000312 Norm: 0.370542 + y 0.000000 + z -0.370542 Norm / debye: 0.941831 + + + Magnetic transition dipole moment / i: + + x 0.000000 Norm: 0.000010 + y -0.000010 + z 0.000000 Norm / Bohr mag.: 0.002760 + + + Electric quadrupole transition moment: + + xx 0.178594 + yy 0.178825 1/3*trace: 0.602688 + zz 1.450645 + xy -0.000000 + xz -0.004183 Anisotropy: 1.271956 + yz -0.000000 + + + + + 9 singlet a excitation + + + Total energy: -2613.616757104312 + + Excitation energy: 0.3885145026875190 + + Excitation energy / eV: 10.57202205042061 + + Excitation energy / nm: 117.2758091263493 + + Excitation energy / cm^(-1): 85269.07699893738 + + + Oscillator strength: + + velocity representation: 0.1078092605577343E-01 + + length representation: 0.9014111779556780E-02 + + mixed representation: 0.9858015649910377E-02 + + + Rotatory strength: + + velocity representation: -0.1512884123499743E-14 + + velocity rep. / 10^(-40)erg*cm^3: -0.9773960104263138E-10 + + length representation: -0.1391349007115093E-14 + + length rep. / 10^(-40)erg*cm^3: -0.8988784716168882E-10 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 19 a -10.95 23 a -0.66 99.7 + + + Change of electron number: + + 0.000000 + + + Electric transition dipole moment (velocity rep.): + + x -0.000000 Norm: 0.204019 + y -0.204019 + z 0.000000 Norm / debye: 0.518568 + + + Electric transition dipole moment (length rep.): + + x -0.000000 Norm: 0.186554 + y -0.186554 + z 0.000000 Norm / debye: 0.474175 + + + Magnetic transition dipole moment / i: + + x 0.001684 Norm: 0.001684 + y -0.000000 + z 0.000000 Norm / Bohr mag.: 0.461490 + + + Electric quadrupole transition moment: + + xx 0.000000 + yy -0.000000 1/3*trace: -0.000000 + zz -0.000000 + xy -0.162467 + xz 0.000000 Anisotropy: 1.761935 + yz 1.004196 + + + + + 10 singlet a excitation + + + Total energy: -2613.616732439692 + + Excitation energy: 0.3885391673076726 + + Excitation energy / eV: 10.57269320917099 + + Excitation energy / nm: 117.2683644115594 + + Excitation energy / cm^(-1): 85274.49025733696 + + + Oscillator strength: + + velocity representation: 0.1084619388674289E-01 + + length representation: 0.9071251670532842E-02 + + mixed representation: 0.9919087687389255E-02 + + + Rotatory strength: + + velocity representation: -0.3759820374452775E-15 + + velocity rep. / 10^(-40)erg*cm^3: -0.2429025050119997E-10 + + length representation: -0.1946472499338951E-15 + + length rep. / 10^(-40)erg*cm^3: -0.1257514984596075E-10 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 18 a -10.96 23 a -0.66 99.7 + + + Change of electron number: + + 0.000000 + + + Electric transition dipole moment (velocity rep.): + + x 0.204509 Norm: 0.204629 + y -0.000000 + z 0.007015 Norm / debye: 0.520119 + + + Electric transition dipole moment (length rep.): + + x 0.187017 Norm: 0.187138 + y -0.000000 + z 0.006716 Norm / debye: 0.475661 + + + Magnetic transition dipole moment / i: + + x 0.000000 Norm: 0.001681 + y 0.001681 + z 0.000000 Norm / Bohr mag.: 0.460837 + + + Electric quadrupole transition moment: + + xx -0.166266 + yy 0.160750 1/3*trace: -0.008098 + zz -0.018779 + xy -0.000000 + xz -1.006165 Anisotropy: 1.765663 + yz 0.000000 + + SUMMARY OF EXCITATION ENERGIES AND DIPOLE OSCILLATOR STRENGTHS (velocity/length): + + ----------------------------------------------------------------------------------------------- + | Exc. | energy (Eh) | energy (eV) | energy (cm-1) | energy (nm) | Osc.(vel) | Osc.(len) | + ----------------------------------------------------------------------------------------------- + | 1 a | 0.229550 | 6.24638 | 50380.478 | 198.490 | 0.00019 | 0.00001 | + | 2 a | 0.229571 | 6.24695 | 50385.028 | 198.472 | 0.00019 | 0.00001 | + | 3 a | 0.298290 | 8.11689 | 65467.156 | 152.748 | 0.00011 | 0.00001 | + | 4 a | 0.298309 | 8.11740 | 65471.248 | 152.739 | 0.00011 | 0.00001 | + | 5 a | 0.338162 | 9.20184 | 74217.885 | 134.738 | 0.00000 | 0.00000 | + | 6 a | 0.339664 | 9.24272 | 74547.601 | 134.142 | 0.00502 | 0.00285 | + | 7 a | 0.339671 | 9.24292 | 74549.179 | 134.140 | 0.00499 | 0.00282 | + | 8 a | 0.341716 | 9.29857 | 74998.020 | 133.337 | 0.03549 | 0.03128 | + | 9 a | 0.388515 | 10.57202 | 85269.077 | 117.276 | 0.01078 | 0.00901 | + | 10 a | 0.388539 | 10.57269 | 85274.490 | 117.268 | 0.01085 | 0.00907 | + ----------------------------------------------------------------------------------------------- + + + + IRREP tensor space dimension number of roots + + a 660 10 + + + Data group $exopt missing or empty + Default state chosen: 10 + + + + Excited state no. 10 chosen for optimization + + + IRREP tensor space dimension number of roots + + a 660 1 + + ---------------------- + CPKS right-hand side + ---------------------- + + + IRREP tensor space dimension number of roots + + a 660 1 + + ---------------- + CPKS equations + ---------------- + + + logfile dipl_a will be constructed + + Switching to coarse grid + + preparing DFT numerical integration .... + Overall gridpoints after grid construction = 7239 + + + Nonorthonormal Krylov Space Iteration + + + total number of roots to be determined: 1 + + + maximum core memory set to 500 MB, + corresponding to 19574 vectors in CAO basis + + + maximum number of simultaneously treated vectors (including degeneracy): 1 + + + Iteration IRREP Converged Max. Euclidean + roots residual norm + + 1 a 0 9.743469059530967D-02 + + 2 a 0 1.990920547140672D-02 + + 3 a 0 6.996988041876034D-03 + + 4 a 0 9.481661616143224D-04 + + 5 a 0 1.415418661365726D-04 + + 6 a 0 3.134156472262940D-05 + + 7 a 1 4.261491170239483D-06 + + + converged! + + + Switching to fine grid + + preparing DFT numerical integration .... + Overall gridpoints after grid construction = 26176 + + Iteration IRREP Converged Max. Euclidean + roots residual norm + + 8 a 0 2.468073088118960D-05 + + + NOTE: Residual norms are larger than 1.00D-05 due to mgrid option! + + Eigenpairs written on logfile dipl_a + + + + IRREP Vector Frequency Euclidean residual norm + + a 1 0.000000000000000D+00 2.468073088118960D-05 + + + + ------------------- + relaxed densities + ------------------- + + + ---------------------------------------- + S+T+V CONTRIBUTIONS TO ENERGY GRADIENT + ---------------------------------------- + + 1e-integral 1st. derivatives will be neglected if expon. factor < 0.100000E-10 + + + ----------------------------------------------- + TWO ELECTRON CONTRIBUTIONS TO ENERGY GRADIENT + ----------------------------------------------- + + biggest 1-particle AO density matrix element is expected to be 3.2223765705 + + core memory to be involved in 2e-gradient : + symmetry shell pair data : 1 + two particle density+dens. estimates : 1596 + derivative integrals : 8498 + derivative integral bound : 900 + totally : 9396 + + + setting up bound for integral derivative estimation + + increment for numerical differentiation : 0.00050000 + + biggest AO integral is expected to be 21.668154127 + biggest cartesian 1st derivative AO integral is expected to be 83.347447328 + + 2e-integral 1st. derivatives will be neglected if expon. factor < 0.100000E-06 + outer boundary for 2e-integral derivative neglection is 0.160508E-08 + + Integrated ground state density : 43.99999821247506 + + + ------------------------------------------------ + cartesian gradient of the energy (hartree/bohr) + ------------------------------------------------ + + ATOM 1 c 2 h 3 h 4 h 5 br +dE/dx -0.9995971D-01 0.1575100D-01 0.1575100D-01 0.7003746D-01 -0.1572360D-02 +dE/dy -0.5400182D-09 -0.4220280D-01 0.4220280D-01 0.3083048D-09 0.1328706D-09 +dE/dz 0.6344875D-01 0.2783363D-01 0.2783363D-01 0.6391954D-01 -0.1830458D+00 + + resulting FORCE (fx,fy,fz) = (0.738D-05,0.535D-13,-.102D-04) + resulting MOMENT (mx,my,mz) = (-.340D-09,-.484D-04,-.474D-09) + + + ********************************************************************** + |maximum component of gradient| : 0.18304580 (atom 5 br) + gradient norm : 0.24924815 + ********************************************************************** + + exx = -0.105546 eyy = -0.142119 ezz = -0.741695 + eyz = 0.000000 exz = -0.070184 exy = -0.000000 + + + : data group $grad is missing + + *** cartesian gradients written onto *** + + + + ============================================================================== + electrostatic moments + ============================================================================== + + reference point for electrostatic moments: 0.00000 0.00000 0.00000 + + + nuc gs,e -> gs,tot excit -> total + ------------------------------------------------------------------------------ + charge + ------------------------------------------------------------------------------ + 44.000000 -44.000000 0.000000 0.000000 0.000000 + + ------------------------------------------------------------------------------ + dipole moment + ------------------------------------------------------------------------------ + x 0.000000 0.000330 0.000330 -0.219984 -0.219654 + y 0.000000 0.000000 0.000000 -0.000000 -0.000000 + z -8.407100 7.723155 -0.683946 -1.040346 -1.724291 + + | dipole moment | = 1.7382 a.u. = 4.4181 debye + + ------------------------------------------------------------------------------ + quadrupole moment + ------------------------------------------------------------------------------ + xx 5.670137 -24.580334 -18.910197 1.118252 -17.791945 + yy 5.670137 -24.579829 -18.909692 -0.351879 -19.261571 + zz 108.471772 -124.598736 -16.126964 -0.293496 -16.420460 + xy 0.000000 0.000000 0.000000 -0.000000 -0.000000 + xz 0.000000 -0.000361 -0.000361 0.878984 0.878623 + yz 0.000000 0.000000 0.000000 0.000000 0.000000 + + 1/3 trace= -17.824659 + anisotropy= 2.893489 + + ============================================================================== + + + + ------------------------------------------------------------------------ + total cpu-time : 3.21 seconds + total wall-time : 5.58 seconds + ------------------------------------------------------------------------ + + **** egrad : all done **** + + + 2023-01-25 00:18:56.545 + diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/egrad/h3cbr_nosym/ref_output.json b/turbomoleio/testfiles/outputs/TM_v7.6/egrad/h3cbr_nosym/ref_output.json new file mode 100644 index 0000000..fe68dd8 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/egrad/h3cbr_nosym/ref_output.json @@ -0,0 +1,949 @@ +{ + "@module": "turbomoleio.output.files", + "@class": "EgradOutput", + "@version": "1.3.0", + "gradients": [ + [ + -0.09995971, + -5.400182e-10, + 0.06344875 + ], + [ + 0.015751, + -0.0422028, + 0.02783363 + ], + [ + 0.015751, + 0.0422028, + 0.02783363 + ], + [ + 0.07003746, + 3.083048e-10, + 0.06391954 + ], + [ + -0.00157236, + 1.328706e-10, + -0.1830458 + ] + ], + "dielectric": [ + [ + -0.105546, + -0.0, + -0.070184 + ], + [ + -0.0, + -0.142119, + 0.0 + ], + [ + -0.070184, + 0.0, + -0.741695 + ] + ], + "dft": { + "@module": "turbomoleio.output.data", + "@class": "DFTData", + "@version": "1.3.0", + "functional": { + "@module": "turbomoleio.output.data", + "@class": "FunctionalData", + "@version": "1.3.0", + "msg": "B-P86 functional\n exchange: LDA + Becke (B88)\n correlation: LDA (VWN) + Perdew (P86)", + "name": "b-p", + "func_type": "GGA", + "xcfun": null + }, + "ri": null, + "spherical_gridsize": 3, + "gridpoints": 302, + "dispersion_correction": null + }, + "escf": { + "@module": "turbomoleio.output.data", + "@class": "EscfData", + "@version": "1.3.0", + "calc_type": "RPA SINGLET-EXCITATION", + "iterations": { + "@module": "turbomoleio.output.data", + "@class": "EscfIterationData", + "@version": "1.3.0", + "steps": [ + [ + [ + "a", + 0, + 0.1104386619886686 + ] + ], + [ + [ + "a", + 0, + 0.01902291898698895 + ] + ], + [ + [ + "a", + 1, + 0.001947444159125122 + ] + ], + [ + [ + "a", + 3, + 0.0003571762018184652 + ] + ], + [ + [ + "a", + 7, + 4.812820204236434e-05 + ] + ], + [ + [ + "a", + 10, + 8.13719388711602e-06 + ] + ] + ], + "converged": true + }, + "residuum_convergence_criterium": 1e-05, + "n_occupied_orbitals": 22, + "orbital_characterization": "scfconv=7", + "max_davidson_iter": 35, + "machine_precision": 2.22e-16, + "max_core_mem": 500.0, + "max_cao_basis_vectors": 19574, + "max_treated_vectors": 18, + "irrep_data": { + "a": { + "tensor_space_dim": 660, + "n_roots": 10 + } + }, + "gs_tot_en": -2614.005271607, + "excitations": { + "a": [ + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -2613.775721258578, + "osc_stre": 7.97369066988228e-06, + "rot_stre": -4.217176920994932e-16, + "dominant_contributions": [ + { + "occ_orb": { + "index": 22, + "irrep": "a", + "energy": -6.5, + "spin": null + }, + "virt_orb": { + "index": 23, + "irrep": "a", + "energy": -0.66, + "spin": null + }, + "coeff": 99.6 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.007213, + -0.0, + -0.000285 + ], + "magnetic_dipole": [ + 0.0, + 0.001695, + -0.0 + ], + "electric_quadrupole": { + "trace": 0.0015840000000000001, + "anisotropy": 0.198269, + "moment": [ + [ + 0.091857, + 0.0, + -0.068729 + ], + [ + 0.0, + -0.091224, + 0.0 + ], + [ + -0.068729, + 0.0, + 0.000951 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -2613.775700528467, + "osc_stre": 8.181619354680342e-06, + "rot_stre": -1.09291831041497e-15, + "dominant_contributions": [ + { + "occ_orb": { + "index": 21, + "irrep": "a", + "energy": -6.5, + "spin": null + }, + "virt_orb": { + "index": 23, + "irrep": "a", + "energy": -0.66, + "spin": null + }, + "coeff": 99.6 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + -0.0, + -0.007312, + 0.0 + ], + "magnetic_dipole": [ + 0.001693, + -0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.198657, + "moment": [ + [ + -0.0, + 0.091425, + 0.0 + ], + [ + 0.091425, + 0.0, + 0.069255 + ], + [ + 0.0, + 0.069255, + 0.0 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -2613.706981293913, + "osc_stre": 7.777246408912506e-06, + "rot_stre": 1.138403339045834e-15, + "dominant_contributions": [ + { + "occ_orb": { + "index": 22, + "irrep": "a", + "energy": -6.5, + "spin": null + }, + "virt_orb": { + "index": 24, + "irrep": "a", + "energy": 1.6, + "spin": null + }, + "coeff": 99.8 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + -0.006253, + -0.0, + -6.1e-05 + ], + "magnetic_dipole": [ + 0.0, + -0.002314, + 0.0 + ], + "electric_quadrupole": { + "trace": -0.001014, + "anisotropy": 1.944884, + "moment": [ + [ + -0.292201, + 0.0, + -1.084304 + ], + [ + 0.0, + 0.291387, + -0.0 + ], + [ + -1.084304, + -0.0, + -0.0002 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -2613.706962649916, + "osc_stre": 7.954267519213227e-06, + "rot_stre": -3.19872457468441e-15, + "dominant_contributions": [ + { + "occ_orb": { + "index": 21, + "irrep": "a", + "energy": -6.5, + "spin": null + }, + "virt_orb": { + "index": 24, + "irrep": "a", + "energy": 1.6, + "spin": null + }, + "coeff": 99.8 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + -0.006324, + -0.0 + ], + "magnetic_dipole": [ + 0.002316, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 1.945663, + "moment": [ + [ + 0.0, + 0.291982, + 0.0 + ], + [ + 0.291982, + -0.0, + -1.084719 + ], + [ + 0.0, + -1.084719, + 0.0 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -2613.667110040014, + "osc_stre": 3.451235507532225e-07, + "rot_stre": 3.915471215385321e-15, + "dominant_contributions": [ + { + "occ_orb": { + "index": 22, + "irrep": "a", + "energy": -6.5, + "spin": null + }, + "virt_orb": { + "index": 25, + "irrep": "a", + "energy": 2.71, + "spin": null + }, + "coeff": 51.1 + }, + { + "occ_orb": { + "index": 21, + "irrep": "a", + "energy": -6.5, + "spin": null + }, + "virt_orb": { + "index": 26, + "irrep": "a", + "energy": 2.71, + "spin": null + }, + "coeff": 48.9 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + -0.0, + -0.001237, + 0.0 + ], + "magnetic_dipole": [ + -2.6e-05, + 0.0, + 0.001177 + ], + "electric_quadrupole": { + "trace": -0.0, + "anisotropy": 0.021206, + "moment": [ + [ + 0.0, + -0.000342, + 0.0 + ], + [ + -0.000342, + -0.0, + 0.012238 + ], + [ + 0.0, + 0.012238, + -0.0 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -2613.665607743472, + "osc_stre": 0.002845517535934603, + "rot_stre": 2.242401648677876e-17, + "dominant_contributions": [ + { + "occ_orb": { + "index": 22, + "irrep": "a", + "energy": -6.5, + "spin": null + }, + "virt_orb": { + "index": 26, + "irrep": "a", + "energy": 2.71, + "spin": null + }, + "coeff": 50.3 + }, + { + "occ_orb": { + "index": 21, + "irrep": "a", + "energy": -6.5, + "spin": null + }, + "virt_orb": { + "index": 25, + "irrep": "a", + "energy": 2.71, + "spin": null + }, + "coeff": 49.5 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.112087, + 0.0, + 0.001634 + ], + "magnetic_dipole": [ + 0.0, + -0.002253, + 0.0 + ], + "electric_quadrupole": { + "trace": -0.007731, + "anisotropy": 1.910822, + "moment": [ + [ + -0.057449, + 0.0, + -1.101749 + ], + [ + 0.0, + 0.056006, + -0.0 + ], + [ + -1.101749, + -0.0, + -0.006287 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -2613.665600553972, + "osc_stre": 0.002815298074725997, + "rot_stre": -1.914477435208092e-16, + "dominant_contributions": [ + { + "occ_orb": { + "index": 21, + "irrep": "a", + "energy": -6.5, + "spin": null + }, + "virt_orb": { + "index": 26, + "irrep": "a", + "energy": 2.71, + "spin": null + }, + "coeff": 51.0 + }, + { + "occ_orb": { + "index": 22, + "irrep": "a", + "energy": -6.5, + "spin": null + }, + "virt_orb": { + "index": 25, + "irrep": "a", + "energy": 2.71, + "spin": null + }, + "coeff": 48.8 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + -0.111501, + -0.0 + ], + "magnetic_dipole": [ + -0.002254, + -0.0, + -1.3e-05 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 1.906516, + "moment": [ + [ + -0.0, + -0.056153, + -0.0 + ], + [ + -0.056153, + 0.0, + 1.099294 + ], + [ + -0.0, + 1.099294, + 0.0 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -2613.663555484773, + "osc_stre": 0.03127875409605586, + "rot_stre": -3.507404109756671e-15, + "dominant_contributions": [ + { + "occ_orb": { + "index": 21, + "irrep": "a", + "energy": -6.5, + "spin": null + }, + "virt_orb": { + "index": 25, + "irrep": "a", + "energy": 2.71, + "spin": null + }, + "coeff": 48.9 + }, + { + "occ_orb": { + "index": 22, + "irrep": "a", + "energy": -6.5, + "spin": null + }, + "virt_orb": { + "index": 26, + "irrep": "a", + "energy": 2.71, + "spin": null + }, + "coeff": 48.1 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.000312, + 0.0, + -0.370542 + ], + "magnetic_dipole": [ + 0.0, + -1e-05, + 0.0 + ], + "electric_quadrupole": { + "trace": 1.808064, + "anisotropy": 1.271956, + "moment": [ + [ + 0.178594, + -0.0, + -0.004183 + ], + [ + -0.0, + 0.178825, + -0.0 + ], + [ + -0.004183, + -0.0, + 1.450645 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -2613.616757104312, + "osc_stre": 0.00901411177955678, + "rot_stre": -1.391349007115093e-15, + "dominant_contributions": [ + { + "occ_orb": { + "index": 19, + "irrep": "a", + "energy": -10.95, + "spin": null + }, + "virt_orb": { + "index": 23, + "irrep": "a", + "energy": -0.66, + "spin": null + }, + "coeff": 99.7 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + -0.0, + -0.186554, + 0.0 + ], + "magnetic_dipole": [ + 0.001684, + -0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": -0.0, + "anisotropy": 1.761935, + "moment": [ + [ + 0.0, + -0.162467, + 0.0 + ], + [ + -0.162467, + -0.0, + 1.004196 + ], + [ + 0.0, + 1.004196, + -0.0 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -2613.616732439692, + "osc_stre": 0.009071251670532842, + "rot_stre": -1.946472499338951e-16, + "dominant_contributions": [ + { + "occ_orb": { + "index": 18, + "irrep": "a", + "energy": -10.96, + "spin": null + }, + "virt_orb": { + "index": 23, + "irrep": "a", + "energy": -0.66, + "spin": null + }, + "coeff": 99.7 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.187017, + -0.0, + 0.006716 + ], + "magnetic_dipole": [ + 0.0, + 0.001681, + 0.0 + ], + "electric_quadrupole": { + "trace": -0.024293999999999996, + "anisotropy": 1.765663, + "moment": [ + [ + -0.166266, + -0.0, + -1.006165 + ], + [ + -0.0, + 0.16075, + 0.0 + ], + [ + -1.006165, + 0.0, + -0.018779 + ] + ] + } + } + ] + } + ] + } + }, + "geometry": { + "@module": "turbomoleio.output.data", + "@class": "GeometryData", + "@version": "1.3.0", + "center_of_mass": [ + 0.0, + 0.0, + 0.0 + ], + "center_of_charge": [ + 0.0, + 0.0, + -0.19107046 + ], + "molecule": { + "@module": "pymatgen.core.structure", + "@class": "Molecule", + "charge": 0.0, + "spin_multiplicity": 1, + "sites": [ + { + "name": "C", + "species": [ + { + "element": "C", + "occu": 1 + } + ], + "xyz": [ + 0.0, + 0.0, + -1.609294542933964 + ], + "properties": {} + }, + { + "name": "H", + "species": [ + { + "element": "H", + "occu": 1 + } + ], + "xyz": [ + 0.5144252531263033, + 0.8910106803616544, + -1.9452652276413738 + ], + "properties": {} + }, + { + "name": "H", + "species": [ + { + "element": "H", + "occu": 1 + } + ], + "xyz": [ + 0.5144252531263033, + -0.8910106803616544, + -1.9452652276413738 + ], + "properties": {} + }, + { + "name": "H", + "species": [ + { + "element": "H", + "occu": 1 + } + ], + "xyz": [ + -1.0288505115443787, + 0.0, + -1.9452652276413738 + ], + "properties": {} + }, + { + "name": "Br", + "species": [ + { + "element": "Br", + "occu": 1 + } + ], + "xyz": [ + 0.0, + 0.0, + 0.315506200729522 + ], + "properties": {} + } + ] + } + }, + "basis": { + "@module": "turbomoleio.output.data", + "@class": "BasisData", + "@version": "1.3.0", + "basis_per_specie": { + "c": "def-SV(P)", + "h": "def-SV(P)", + "br": "def-SV(P)" + }, + "aux_basis_per_specie": {}, + "number_scf_basis_func": 52, + "number_scf_aux_basis_func": null + }, + "run": { + "@module": "turbomoleio.output.data", + "@class": "RunData", + "@version": "1.3.0", + "host": "frontal3", + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:18:51.113000" + }, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:18:56.545000" + }, + "cpu_time": 3.21, + "wall_time": 5.58 + }, + "tm": { + "@module": "turbomoleio.output.data", + "@class": "TurbomoleData", + "@version": "1.3.0", + "version": "7.6", + "build": null, + "executable": "egrad" + }, + "cosmo": null, + "integral": { + "@module": "turbomoleio.output.data", + "@class": "IntegralData", + "@version": "1.3.0", + "integral_neglect_threshold": 3.3e-11, + "thize": 1e-05, + "thime": 5 + }, + "ex_state": 10 +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/egrad/h3cbr_nosym/ref_parser.json b/turbomoleio/testfiles/outputs/TM_v7.6/egrad/h3cbr_nosym/ref_parser.json new file mode 100644 index 0000000..272992b --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/egrad/h3cbr_nosym/ref_parser.json @@ -0,0 +1,919 @@ +{ + "all_done": true, + "header": { + "executable": "egrad", + "host": "frontal3", + "tm_version": "7.6", + "tm_build": null, + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:18:51.113000" + } + }, + "centers": { + "center_of_mass": [ + 0.0, + 0.0, + 0.0 + ], + "center_of_charge": [ + 0.0, + 0.0, + -0.19107046 + ] + }, + "coordinates": { + "coords": [ + [ + 0.0, + 0.0, + -3.04112594 + ], + [ + 0.97212284, + 1.68376616, + -3.67601852 + ], + [ + 0.97212284, + -1.68376616, + -3.67601852 + ], + [ + -1.94424569, + 0.0, + -3.67601852 + ], + [ + 0.0, + 0.0, + 0.59622031 + ] + ], + "species": [ + "c", + "h", + "h", + "h", + "br" + ], + "charges": [ + 6.0, + 1.0, + 1.0, + 1.0, + 35.0 + ], + "isotopes": [ + 0, + 0, + 0, + 0, + 0 + ] + }, + "basis": { + "basis_per_specie": { + "c": "def-SV(P)", + "h": "def-SV(P)", + "br": "def-SV(P)" + }, + "aux_basis_per_specie": {}, + "number_scf_basis_func": 52, + "number_scf_aux_basis_func": null + }, + "symmetry": { + "symbol": "c1", + "n_reps": 1, + "reps": [ + "a" + ] + }, + "cosmo_header": null, + "density_functional_data": { + "functional_msg": "B-P86 functional\n exchange: LDA + Becke (B88)\n correlation: LDA (VWN) + Perdew (P86)", + "functional_name": "b-p", + "functional_type": "GGA", + "xcfun": null, + "spherical_gridsize": 3, + "gridpoints": 302 + }, + "rij_info": null, + "dftd": null, + "pre_scf_run": null, + "scf_iterations": null, + "scf_energies": null, + "cosmo_results": null, + "electrostatic_moments": { + "unrestricted_electrons": null, + "charge": 0.0, + "dipole": { + "norm": 1.7382, + "moment": [ + -0.219654, + -0.0, + -1.724291 + ] + }, + "quadrupole": { + "trace": -53.473977000000005, + "anisotropy": 2.893489, + "moment": [ + [ + -17.791945, + -0.0, + 0.878623 + ], + [ + -0.0, + -19.261571, + 0.0 + ], + [ + 0.878623, + 0.0, + -16.42046 + ] + ] + } + }, + "timings": { + "cpu_time": 3.21, + "wall_time": 5.58, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:18:56.545000" + } + }, + "s2": null, + "is_uhf": false, + "fermi": null, + "integral": { + "integral_neglect_threshold": 3.3e-11, + "thize": 1e-05, + "thime": 5 + }, + "pre_escf_run": { + "calc_type": "RPA SINGLET-EXCITATION", + "residuum_convergence_criterium": 1e-05, + "n_occupied_orbitals": 22, + "orbital_characterization": "scfconv=7", + "max_davidson_iter": 35, + "machine_precision": 2.22e-16, + "max_core_mem": 500.0, + "max_cao_basis_vectors": 19574, + "max_treated_vectors": 18, + "irrep_data": { + "a": { + "tensor_space_dim": 660, + "n_roots": 10 + } + } + }, + "escf_iterations": { + "steps": [ + [ + [ + "a", + 0, + 0.1104386619886686 + ] + ], + [ + [ + "a", + 0, + 0.01902291898698895 + ] + ], + [ + [ + "a", + 1, + 0.001947444159125122 + ] + ], + [ + [ + "a", + 3, + 0.0003571762018184652 + ] + ], + [ + [ + "a", + 7, + 4.812820204236434e-05 + ] + ], + [ + [ + "a", + 10, + 8.13719388711602e-06 + ] + ] + ], + "converged": true + }, + "escf_gs_total_en": -2614.005271607, + "escf_excitations": { + "a": [ + { + "tot_en": -2613.775721258578, + "osc_stre": 7.97369066988228e-06, + "rot_stre": -4.217176920994932e-16, + "dominant_contributions": [ + { + "occ_orb": { + "index": 22, + "irrep": "a", + "energy": -6.5, + "spin": null + }, + "virt_orb": { + "index": 23, + "irrep": "a", + "energy": -0.66, + "spin": null + }, + "coeff": 99.6 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.007213, + -0.0, + -0.000285 + ], + "magnetic_dipole": [ + 0.0, + 0.001695, + -0.0 + ], + "electric_quadrupole": { + "trace": 0.0015840000000000001, + "anisotropy": 0.198269, + "moment": [ + [ + 0.091857, + 0.0, + -0.068729 + ], + [ + 0.0, + -0.091224, + 0.0 + ], + [ + -0.068729, + 0.0, + 0.000951 + ] + ] + } + } + ] + }, + { + "tot_en": -2613.775700528467, + "osc_stre": 8.181619354680342e-06, + "rot_stre": -1.09291831041497e-15, + "dominant_contributions": [ + { + "occ_orb": { + "index": 21, + "irrep": "a", + "energy": -6.5, + "spin": null + }, + "virt_orb": { + "index": 23, + "irrep": "a", + "energy": -0.66, + "spin": null + }, + "coeff": 99.6 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + -0.0, + -0.007312, + 0.0 + ], + "magnetic_dipole": [ + 0.001693, + -0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.198657, + "moment": [ + [ + -0.0, + 0.091425, + 0.0 + ], + [ + 0.091425, + 0.0, + 0.069255 + ], + [ + 0.0, + 0.069255, + 0.0 + ] + ] + } + } + ] + }, + { + "tot_en": -2613.706981293913, + "osc_stre": 7.777246408912506e-06, + "rot_stre": 1.138403339045834e-15, + "dominant_contributions": [ + { + "occ_orb": { + "index": 22, + "irrep": "a", + "energy": -6.5, + "spin": null + }, + "virt_orb": { + "index": 24, + "irrep": "a", + "energy": 1.6, + "spin": null + }, + "coeff": 99.8 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + -0.006253, + -0.0, + -6.1e-05 + ], + "magnetic_dipole": [ + 0.0, + -0.002314, + 0.0 + ], + "electric_quadrupole": { + "trace": -0.001014, + "anisotropy": 1.944884, + "moment": [ + [ + -0.292201, + 0.0, + -1.084304 + ], + [ + 0.0, + 0.291387, + -0.0 + ], + [ + -1.084304, + -0.0, + -0.0002 + ] + ] + } + } + ] + }, + { + "tot_en": -2613.706962649916, + "osc_stre": 7.954267519213227e-06, + "rot_stre": -3.19872457468441e-15, + "dominant_contributions": [ + { + "occ_orb": { + "index": 21, + "irrep": "a", + "energy": -6.5, + "spin": null + }, + "virt_orb": { + "index": 24, + "irrep": "a", + "energy": 1.6, + "spin": null + }, + "coeff": 99.8 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + -0.006324, + -0.0 + ], + "magnetic_dipole": [ + 0.002316, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 1.945663, + "moment": [ + [ + 0.0, + 0.291982, + 0.0 + ], + [ + 0.291982, + -0.0, + -1.084719 + ], + [ + 0.0, + -1.084719, + 0.0 + ] + ] + } + } + ] + }, + { + "tot_en": -2613.667110040014, + "osc_stre": 3.451235507532225e-07, + "rot_stre": 3.915471215385321e-15, + "dominant_contributions": [ + { + "occ_orb": { + "index": 22, + "irrep": "a", + "energy": -6.5, + "spin": null + }, + "virt_orb": { + "index": 25, + "irrep": "a", + "energy": 2.71, + "spin": null + }, + "coeff": 51.1 + }, + { + "occ_orb": { + "index": 21, + "irrep": "a", + "energy": -6.5, + "spin": null + }, + "virt_orb": { + "index": 26, + "irrep": "a", + "energy": 2.71, + "spin": null + }, + "coeff": 48.9 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + -0.0, + -0.001237, + 0.0 + ], + "magnetic_dipole": [ + -2.6e-05, + 0.0, + 0.001177 + ], + "electric_quadrupole": { + "trace": -0.0, + "anisotropy": 0.021206, + "moment": [ + [ + 0.0, + -0.000342, + 0.0 + ], + [ + -0.000342, + -0.0, + 0.012238 + ], + [ + 0.0, + 0.012238, + -0.0 + ] + ] + } + } + ] + }, + { + "tot_en": -2613.665607743472, + "osc_stre": 0.002845517535934603, + "rot_stre": 2.242401648677876e-17, + "dominant_contributions": [ + { + "occ_orb": { + "index": 22, + "irrep": "a", + "energy": -6.5, + "spin": null + }, + "virt_orb": { + "index": 26, + "irrep": "a", + "energy": 2.71, + "spin": null + }, + "coeff": 50.3 + }, + { + "occ_orb": { + "index": 21, + "irrep": "a", + "energy": -6.5, + "spin": null + }, + "virt_orb": { + "index": 25, + "irrep": "a", + "energy": 2.71, + "spin": null + }, + "coeff": 49.5 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.112087, + 0.0, + 0.001634 + ], + "magnetic_dipole": [ + 0.0, + -0.002253, + 0.0 + ], + "electric_quadrupole": { + "trace": -0.007731, + "anisotropy": 1.910822, + "moment": [ + [ + -0.057449, + 0.0, + -1.101749 + ], + [ + 0.0, + 0.056006, + -0.0 + ], + [ + -1.101749, + -0.0, + -0.006287 + ] + ] + } + } + ] + }, + { + "tot_en": -2613.665600553972, + "osc_stre": 0.002815298074725997, + "rot_stre": -1.914477435208092e-16, + "dominant_contributions": [ + { + "occ_orb": { + "index": 21, + "irrep": "a", + "energy": -6.5, + "spin": null + }, + "virt_orb": { + "index": 26, + "irrep": "a", + "energy": 2.71, + "spin": null + }, + "coeff": 51.0 + }, + { + "occ_orb": { + "index": 22, + "irrep": "a", + "energy": -6.5, + "spin": null + }, + "virt_orb": { + "index": 25, + "irrep": "a", + "energy": 2.71, + "spin": null + }, + "coeff": 48.8 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + -0.111501, + -0.0 + ], + "magnetic_dipole": [ + -0.002254, + -0.0, + -1.3e-05 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 1.906516, + "moment": [ + [ + -0.0, + -0.056153, + -0.0 + ], + [ + -0.056153, + 0.0, + 1.099294 + ], + [ + -0.0, + 1.099294, + 0.0 + ] + ] + } + } + ] + }, + { + "tot_en": -2613.663555484773, + "osc_stre": 0.03127875409605586, + "rot_stre": -3.507404109756671e-15, + "dominant_contributions": [ + { + "occ_orb": { + "index": 21, + "irrep": "a", + "energy": -6.5, + "spin": null + }, + "virt_orb": { + "index": 25, + "irrep": "a", + "energy": 2.71, + "spin": null + }, + "coeff": 48.9 + }, + { + "occ_orb": { + "index": 22, + "irrep": "a", + "energy": -6.5, + "spin": null + }, + "virt_orb": { + "index": 26, + "irrep": "a", + "energy": 2.71, + "spin": null + }, + "coeff": 48.1 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.000312, + 0.0, + -0.370542 + ], + "magnetic_dipole": [ + 0.0, + -1e-05, + 0.0 + ], + "electric_quadrupole": { + "trace": 1.808064, + "anisotropy": 1.271956, + "moment": [ + [ + 0.178594, + -0.0, + -0.004183 + ], + [ + -0.0, + 0.178825, + -0.0 + ], + [ + -0.004183, + -0.0, + 1.450645 + ] + ] + } + } + ] + }, + { + "tot_en": -2613.616757104312, + "osc_stre": 0.00901411177955678, + "rot_stre": -1.391349007115093e-15, + "dominant_contributions": [ + { + "occ_orb": { + "index": 19, + "irrep": "a", + "energy": -10.95, + "spin": null + }, + "virt_orb": { + "index": 23, + "irrep": "a", + "energy": -0.66, + "spin": null + }, + "coeff": 99.7 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + -0.0, + -0.186554, + 0.0 + ], + "magnetic_dipole": [ + 0.001684, + -0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": -0.0, + "anisotropy": 1.761935, + "moment": [ + [ + 0.0, + -0.162467, + 0.0 + ], + [ + -0.162467, + -0.0, + 1.004196 + ], + [ + 0.0, + 1.004196, + -0.0 + ] + ] + } + } + ] + }, + { + "tot_en": -2613.616732439692, + "osc_stre": 0.009071251670532842, + "rot_stre": -1.946472499338951e-16, + "dominant_contributions": [ + { + "occ_orb": { + "index": 18, + "irrep": "a", + "energy": -10.96, + "spin": null + }, + "virt_orb": { + "index": 23, + "irrep": "a", + "energy": -0.66, + "spin": null + }, + "coeff": 99.7 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.187017, + -0.0, + 0.006716 + ], + "magnetic_dipole": [ + 0.0, + 0.001681, + 0.0 + ], + "electric_quadrupole": { + "trace": -0.024293999999999996, + "anisotropy": 1.765663, + "moment": [ + [ + -0.166266, + -0.0, + -1.006165 + ], + [ + -0.0, + 0.16075, + 0.0 + ], + [ + -1.006165, + 0.0, + -0.018779 + ] + ] + } + } + ] + } + ] + }, + "rdgrad_memory": null, + "gradient": { + "gradients": [ + [ + -0.09995971, + -5.400182e-10, + 0.06344875 + ], + [ + 0.015751, + -0.0422028, + 0.02783363 + ], + [ + 0.015751, + 0.0422028, + 0.02783363 + ], + [ + 0.07003746, + 3.083048e-10, + 0.06391954 + ], + [ + -0.00157236, + 1.328706e-10, + -0.1830458 + ] + ], + "dielectric": [ + [ + -0.105546, + -0.0, + -0.070184 + ], + [ + -0.0, + -0.142119, + 0.0 + ], + [ + -0.070184, + 0.0, + -0.741695 + ] + ] + }, + "egrad_excited_state": { + "index": 10, + "default": true + }, + "statpt_info": null, + "relax_info": null, + "relax_gradient_values": null, + "relax_conv_info": null, + "aoforce_numerical_integration": null, + "aoforce_analysis": null, + "mp2_results": { + "energy": null + }, + "riper_scf_energies": null, + "periodicity_data": null +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/escf/Al6_columns/escf.log b/turbomoleio/testfiles/outputs/TM_v7.6/escf/Al6_columns/escf.log new file mode 100644 index 0000000..a5099dc --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/escf/Al6_columns/escf.log @@ -0,0 +1,1257 @@ + operating system is UNIX ! + + escf (frontal3) : TURBOMOLE rev. V7-6 19 Oct 2021 at 10:10:11 compiled Oct 19th 2021 + Copyright (C) 2021 TURBOMOLE GmbH, Karlsruhe + + + 2023-01-25 00:19:15.731 + + + + + e s c f + + TURBOMOLE GmbH + + + integral direct evaluation of + + * excitation energies and transition moments + * dynamic response properties + * stabilities + + + + references (see also programs dscf and ridft) + + implementation and benchmarks (review) + F. Furche and D. Rappoport, + "Density functional methods for excited states: + equilibrium structure and electronic spectra", + ch. III of "Computational Photochemistry", ed. by + M. Olivucci, vol. 16 of "Theoretical and Computational + Chemistry", Elsevier, Amsterdam, 2005. + + Bethe-Salpeter equation + K. Krause and W. Klopper, + J. Comput. Chem. 38 (2017) 383. + + 2c BSE, GW and hybrid TD-DFT + C. Holzer and W. Klopper + J. Chem. Phys. 150, 204116 (2019) + + nonorthonormal Krylov space methods + F. Furche, B. T. Krull, B. D. Nguyen, and J. Kwon, + J. Chem. Phys. 144 (2016), 174105. + + two-component GW quasi particle energies + M. Kuehn and F. Weigend, + J. Chem. Theory Comput. 11 (2015), 969. + + two-component TDDFT with spin-orbit coupling + M. Kuehn and F. Weigend, + J. Chem. Theory Comput. 9 (2013), 5341. + M. Kuehn and F. Weigend, + J. Chem. Phys. 142 (2015), 034116. + + GW quasi particle energies + M. J. van Setten, F. Weigend, and F. Evers, + J. Chem. Theory Comput. 9 (2013), 232. + + Fast GW methods: RIGW, contour deformation + J. Chem. Phys. 150, 204116 (2019) + + current-density dependent meta-GGA Linear Response + J. E. Bates and F. Furche, + J. Chem. Phys. 137 (2012), 164105. + + spin-flip method + M. Kuehn and F. Weigend, + Chem. Phys. Chem. 12 (2011), 3331. + + RI-J method + R. Bauernschmitt, M. Haeser, O. Treutler, and R. Ahlrichs, + Chem. Phys. Lett. 264 (1997), 573. + + density functional implementation + R. Bauernschmitt and R. Ahlrichs, + Chem. Phys. Lett. 256 (1996), 454. + R. Bauernschmitt and R. Ahlrichs, + J. Chem. Phys. 104 (1996), 9047. + + UHF extension (RPA and CIS) + C. Ochsenfeld, J. Gauss, and R. Ahlrichs, + J. Chem. Phys. 103 (1995), 7401. + + integral direct algorithm + H. Weiss, R. Ahlrichs, and M. Haeser, + J. Chem. Phys. 99 (1993), 1262. + + Seminumerical and pseudospectral algorithms + C. Holzer, J. Chem. Phys. 153 (2020), 184115. + + Two-component static/dynamic polarizabilities, + and relativistic damped-response approach, + polarizabilities and damped response at GW-BSE level + M. Kehry, Y. J. Franzke, C. Holzer, and W. Klopper, + Mol. Phys. 118 (2020), e1755064 + + Nuclear spin-spin coupling constants + F. Mack, C. J. Schattenberg, M. Kaupp, F. Weigend, + J. Phys. Chem. A 2020, 124, 41, 8529 + + + + + + +--------------------------------------------------+ + | Atomic coordinate, charge and isotop information | + +--------------------------------------------------+ + + atomic coordinates atom charge isotop + 2.91365085 0.00000000 2.47857830 al 13.000 0 + -1.45682542 2.52329565 2.47857830 al 13.000 0 + -1.45682542 -2.52329565 2.47857830 al 13.000 0 + 2.91365085 0.00000000 -2.47857830 al 13.000 0 + -1.45682542 -2.52329565 -2.47857830 al 13.000 0 + -1.45682542 2.52329565 -2.47857830 al 13.000 0 + + center of nuclear mass : 0.00000000 0.00000000 0.00000000 + center of nuclear charge: 0.00000000 0.00000000 0.00000000 + + ************************************************************************* + Al6 triplett + ************************************************************************* + + + + +--------------------------------------------------+ + | basis set information | + +--------------------------------------------------+ + + we will work with the 1s 3p 5d 7f 9g ... basis set + ...i.e. with spherical basis functions... + + type atoms prim cont basis + --------------------------------------------------------------------------- + al 6 36 18 def-SV(P) [4s3p1d|10s7p1d] + --------------------------------------------------------------------------- + total: 6 216 108 + --------------------------------------------------------------------------- + + total number of primitive shells : 18 + total number of contracted shells : 48 + total number of cartesian basis functions : 114 + total number of SCF-basis functions : 108 + + + residuum convergence criterium : 0.10E-04 + + + integral neglect threshold : 0.29E-10 + integral storage threshold THIZE : 0.10E-04 + integral storage threshold THIME : 5 + + + FOUND RI-J FLAG ! + + + AUXILIARY BASIS SET information: + + we will work with the 1s 3p 5d 7f 9g ... basis set + ...i.e. with spherical basis functions... + + type atoms prim cont basis + --------------------------------------------------------------------------- + al 6 56 31 def-SV(P) [5s3p2d1f|12s4p5d1f] + --------------------------------------------------------------------------- + total: 6 336 186 + --------------------------------------------------------------------------- + + total number of primitive shells : 22 + total number of contracted shells : 66 + total number of cartesian basis functions : 216 + total number of SCF-basis functions : 186 + + RPA UHF-EXCITATION-CALCULATION (spin-conserved) + + FOUND DFT-FLAG ! + + + symmetry group of the molecule : d3h + + the group has the following generators : + c3(z) + c2(x) + mirror plane sigma(xy) + + 12 symmetry operations found + + there are 6 real representations : a1' a2' e' a1" a2" e" + + maximum number of shells which are related by symmetry : 6 + + IRREPs of excited states : a1' a2' e' a1" a2" e" + + mo occupation : + irrep mo's occupied + a1' 13 7 + a2' 5 1 + e' 18 7 + a1" 5 1 + a2" 13 5 + e" 18 6 + + number of basis functions : 108 + number of occupied orbitals : 40 + + ALPHA-Occupation: 40 + BETA-Occupation : 38 + + ------------------ + density functional + ------------------ + B-P86 functional + exchange: LDA + Becke (B88) + correlation: LDA (VWN) + Perdew (P86) + + iterations will be done with small grid + + spherical integration : Lebedev's spherical grid + spherical gridsize : 3 + i.e. gridpoints : 302 + value for diffuse not defined + radial integration : Chebyshev 2nd kind (scaling 3) + radial gridsize : 3 + integration cells : 1 + partition function : becke + partition sharpness : 3 + + grid rotated due to d3 symmetry + + ---------------------- + RI - INFORMATION + ---------------------- + + biggest AO integral is expected to be 7.882179841 + + Threshold for integral neglect (rithr2): 0.29E-10 + Threshold for integral neglect (rithr1): 0.29E-10 + + Contributions to RI integral batches: + neglected integral batches: 1044 + direct contribution: 0 + memory contribution: 132 + Core memory available (ricore) 40 MiB + Core memory needed for (P|Q) and Cholesky 1 MiB + Core memory used for integrals 2 MiB + + **************************************** + Memory allocated for RIDFT 2 MiB + **************************************** + + MOs are in ASCII format ! + + + reading orbital data $uhfmo_alpha from file control + orbital characterization : scfconv=7 + + reading orbital data $uhfmo_beta from file control + orbital characterization : scfconv=7 + preparing DFT numerical integration .... + Overall gridpoints after grid construction = 2081 + + Calculating ground state density on molecular grid + + Integral of ground state total density: Na = 77.99685818104456 + + Integral of ground state spin density: Nb = 1.999782063536158 + + + all orbitals will be included in the transformation + + number of non-frozen orbitals : 108 + number of non-frozen occupied orbitals : 40 + all orbitals will be included in the transformation + + number of non-frozen orbitals : 108 + number of non-frozen occupied orbitals : 38 + + dimension of super-tensorspace: 1 + + IRREP tensor space dimension number of roots + + a1' 473 1 + a2' 417 1 + e' 895 1 + a1" 418 1 + a2" 482 1 + e" 900 1 + + maximum number of Davidson iterations set to 35 + + + machine precision: 2.22D-16 + + + logfile unrs_a1' will be constructed + + logfile unrs_a2' will be constructed + + logfile unrs_e' will be constructed + + logfile unrs_a1" will be constructed + + logfile unrs_a2" will be constructed + + logfile unrs_e" will be constructed + + + Nonorthonormal Krylov Space Iteration + + + total number of roots to be determined: 6 + + + maximum core memory set to 50 MB, + corresponding to 247 vectors in CAO basis + + + maximum number of simultaneously treated vectors (including degeneracy): 16 + + + Iteration IRREP Converged Max. Euclidean + roots residual norm + + 1 a1' 0 6.653544993557436D-03 + a2' 0 6.187712856098195D-03 + e' 0 8.162478316899516D-03 + a1" 0 1.113725974532640D-02 + a2" 0 1.312868992323971D-02 + e" 0 7.807096186205476D-03 + + 2 a1' 0 3.598505003138214D-03 + a2' 0 1.514668655498120D-03 + e' 0 4.719102888037123D-03 + a1" 0 3.942541609303284D-03 + a2" 0 8.386763245585922D-03 + e" 0 3.670980028675391D-03 + + 3 a1' 0 1.095852930325537D-03 + a2' 0 3.604105534641941D-04 + e' 0 1.900591630134017D-03 + a1" 0 1.636884000106233D-04 + a2" 0 4.315154173424182D-03 + e" 0 1.441282621939299D-03 + + 4 a1' 0 2.596367867987149D-04 + a2' 0 1.004178261695742D-04 + e' 0 4.246357733925653D-04 + a1" 0 1.106763198540536D-05 + a2" 0 1.659229147375020D-03 + e" 0 3.333729188056164D-04 + + 5 a1' 0 1.168883602725443D-04 + a2' 0 1.570961563090160D-05 + e' 0 1.276907577221173D-04 + a1" 1 9.860324075377021D-07 + a2" 0 8.426678864281076D-04 + e" 0 2.176992622041266D-04 + + 6 a1' 0 3.442713308660887D-05 + a2' 1 2.156116324469686D-06 + e' 0 4.985703275537566D-05 + a1" 1 9.860324075377021D-07 + a2" 0 4.947334125118694D-04 + e" 0 5.040058712526180D-05 + + 7 a1' 1 8.046175457216619D-06 + a2' 1 2.156116324469686D-06 + e' 0 1.464266178839974D-05 + a1" 1 9.860324075377021D-07 + a2" 0 1.686054648388413D-04 + e" 1 8.658079521620624D-06 + + 8 a1' 1 8.046175457216619D-06 + a2' 1 2.156116324469686D-06 + e' 1 7.501826682208339D-06 + a1" 1 9.860324075377021D-07 + a2" 0 2.202702980868813D-05 + e" 1 8.658079521620624D-06 + + 9 a1' 1 8.046175457216619D-06 + a2' 1 2.156116324469686D-06 + e' 1 7.501826682208339D-06 + a1" 1 9.860324075377021D-07 + a2" 1 7.466683917848791D-06 + e" 1 8.658079521620624D-06 + + + converged! + + + Switching to fine grid + + preparing DFT numerical integration .... + Overall gridpoints after grid construction = 7043 + + Calculating ground state density on molecular grid + + Integral of ground state total density: Na = 77.99995750386027 + + Integral of ground state spin density: Nb = 1.999995303782432 + + + + Iteration IRREP Converged Max. Euclidean + roots residual norm + + 10 a1' 0 1.057457691015560D-05 + a2' 1 9.250272059524912D-06 + e' 0 1.007664289628898D-05 + a1" 0 1.594689546564248D-05 + a2" 0 3.336978877544380D-05 + e" 0 1.534076944026955D-05 + + + NOTE: Residual norms are larger than 1.00D-05 due to mgrid option! + + Eigenpairs written on logfile unrs_a1' + + Eigenpairs written on logfile unrs_a2' + + Eigenpairs written on logfile unrs_e' + + Eigenpairs written on logfile unrs_a1" + + Eigenpairs written on logfile unrs_a2" + + Eigenpairs written on logfile unrs_e" + + + + IRREP Vector Eigenvalue Euclidean residual norm + + a1' 1 4.173452717754516D-03 1.057457691015560D-05 + + a2' 1 3.948336985411706D-03 9.250272059524912D-06 + + e' 1 6.507476981358921D-04 1.007664289628898D-05 + + a1" 1 3.044075723953279D-03 1.594689546564248D-05 + + a2" 1 2.013001419853261D-03 3.336978877544380D-05 + + e" 1 2.390278415057089D-03 1.534076944026955D-05 + + + + + + + Selection rules for point group d3h + + + Subduction with respect to d3h : + + Polar vector representation: e', a2" + + Axial vector representation: a2', e" + + Symmetric second rank tensor representation: a1', e', e" + + + + + Ground state + + + Total energy: -1454.190160138000 + + Charge: + + elec nuc total + + -78.000000 78.000000 0.000000 + + + Electric dipole moment: + + elec nuc total + + x 0.000000 0.000000 0.000000 Norm: 0.000000 + y 0.000000 0.000000 0.000000 + z 0.000000 0.000000 0.000000 Norm / debye: 0.000000 + + + Electric quadrupole moment: + + elec nuc total + + xx -390.390699 331.085089 -59.305610 + yy -390.390699 331.085089 -59.305610 1/3*trace: -59.000862 + zz -537.572699 479.181332 -58.391368 + xy 0.000000 0.000000 0.000000 + xz 0.000000 0.000000 0.000000 Anisotropy: 0.914242 + yz 0.000000 0.000000 0.000000 + + + + ============================================================================== + + I R R E P a1' + + ============================================================================== + + + Excitation is electric dipole forbidden + + Excitation is magnetic dipole forbidden + + Excitation is electric quadrupole allowed + + + + + 1 a1' excitation + + + Total energy: -1454.125557872422 + + Excitation energy: 0.6460226557756714E-01 + + Excitation energy / eV: 1.757917842110733 + + Excitation energy / nm: 705.2903215180999 + + Excitation energy / cm^(-1): 14178.55838001987 + + + Oscillator strength: + + velocity representation: 0.000000000000000 + + length representation: 0.000000000000000 + + mixed representation: 0.000000000000000 + + + Rotatory strength: + + velocity representation: 0.000000000000000 + + velocity rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + length representation: 0.000000000000000 + + length rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 7 e' alpha -4.84 8 e' alpha -3.02 99.4 + + = 0.9957473430 + = 0.0042526570 + = -0.0030417093 + + 1/2 = 0.4969582907 + 1/2 = 0.5030417093 + + = 1.0000000000 + + + Change of electron number: + + -0.000000 + + + Electric transition dipole moment (velocity rep.): + + x 0.000000 Norm: 0.000000 + y 0.000000 + z 0.000000 Norm / debye: 0.000000 + + + Electric transition dipole moment (length rep.): + + x 0.000000 Norm: 0.000000 + y 0.000000 + z 0.000000 Norm / debye: 0.000000 + + + Magnetic transition dipole moment / i: + + x 0.000000 Norm: 0.000000 + y 0.000000 + z 0.000000 Norm / Bohr mag.: 0.000000 + + + Electric quadrupole transition moment: + + xx -0.944104 + yy -0.944104 1/3*trace: -0.574100 + zz 0.165909 + xy 0.000000 + xz 0.000000 Anisotropy: 1.110013 + yz 0.000000 + + + + ============================================================================== + + I R R E P a2' + + ============================================================================== + + + Excitation is electric dipole forbidden + + Excitation is magnetic dipole allowed + + Excitation is electric quadrupole forbidden + + + + + 1 a2' excitation + + + Total energy: -1454.127324344177 + + Excitation energy: 0.6283579382335920E-01 + + Excitation energy / eV: 1.709849679383866 + + Excitation energy / nm: 725.1178012978620 + + Excitation energy / cm^(-1): 13790.86264412310 + + + Oscillator strength: + + velocity representation: 0.000000000000000 + + length representation: 0.000000000000000 + + mixed representation: 0.000000000000000 + + + Rotatory strength: + + velocity representation: 0.000000000000000 + + velocity rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + length representation: 0.000000000000000 + + length rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 7 e' alpha -4.84 8 e' alpha -3.02 98.9 + + = 0.9933832464 + = 0.0066167536 + = -0.0051575051 + + 1/2 = 0.4948424949 + 1/2 = 0.5051575051 + + = 1.0000000000 + + + Change of electron number: + + 0.000000 + + + Electric transition dipole moment (velocity rep.): + + x 0.000000 Norm: 0.000000 + y 0.000000 + z 0.000000 Norm / debye: 0.000000 + + + Electric transition dipole moment (length rep.): + + x 0.000000 Norm: 0.000000 + y 0.000000 + z 0.000000 Norm / debye: 0.000000 + + + Magnetic transition dipole moment / i: + + x 0.000000 Norm: 0.001132 + y 0.000000 + z -0.001132 Norm / Bohr mag.: 0.310274 + + + Electric quadrupole transition moment: + + xx 0.000000 + yy 0.000000 1/3*trace: 0.000000 + zz 0.000000 + xy 0.000000 + xz 0.000000 Anisotropy: 0.000000 + yz 0.000000 + + + + ============================================================================== + + I R R E P e' + + ============================================================================== + + + Excitation is electric dipole allowed + + Excitation is magnetic dipole forbidden + + Excitation is electric quadrupole allowed + + + + + 1 e' excitation + + + Total energy: -1454.164650381080 + + Excitation energy: 0.2550975692036073E-01 + + Excitation energy / eV: 0.6941561017603349 + + Excitation energy / nm: 1786.114732580356 + + Excitation energy / cm^(-1): 5598.744479342940 + + + Oscillator strength: + + velocity representation: 0.6659932145145367E-02 + + length representation: 0.3293161473237949E-03 + + mixed representation: 0.1480953475122419E-02 + + + Rotatory strength: + + velocity representation: 0.000000000000000 + + velocity rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + length representation: 0.000000000000000 + + length rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 7 a1' beta -4.98 7 e' beta -4.26 99.1 + + = 0.0057879690 + = 0.9942120310 + = 0.0006878394 + + 1/2 = 0.5006878394 + 1/2 = 0.4993121606 + + = 1.0000000000 + + + + 1st column + + Change of electron number: + + 0.000000 + + + Electric transition dipole moment (velocity rep.): + + x -0.442499 Norm: 0.442499 + y 0.000000 + z 0.000000 Norm / debye: 1.124729 + + + Electric transition dipole moment (length rep.): + + x 0.098397 Norm: 0.098397 + y 0.000000 + z 0.000000 Norm / debye: 0.250103 + + + Magnetic transition dipole moment / i: + + x 0.000000 Norm: 0.000000 + y 0.000000 + z 0.000000 Norm / Bohr mag.: 0.000000 + + + Electric quadrupole transition moment: + + xx 3.935711 + yy -3.935711 1/3*trace: 0.000000 + zz 0.000000 + xy 0.000000 + xz 0.000000 Anisotropy: 6.816851 + yz 0.000000 + + + 2nd column + + Change of electron number: + + 0.000000 + + + Electric transition dipole moment (velocity rep.): + + x 0.000000 Norm: 0.442499 + y -0.442499 + z 0.000000 Norm / debye: 1.124729 + + + Electric transition dipole moment (length rep.): + + x 0.000000 Norm: 0.098397 + y 0.098397 + z 0.000000 Norm / debye: 0.250103 + + + Magnetic transition dipole moment / i: + + x 0.000000 Norm: 0.000000 + y 0.000000 + z 0.000000 Norm / Bohr mag.: 0.000000 + + + Electric quadrupole transition moment: + + xx 0.000000 + yy 0.000000 1/3*trace: 0.000000 + zz 0.000000 + xy -3.935711 + xz 0.000000 Anisotropy: 6.816851 + yz 0.000000 + + + + ============================================================================== + + I R R E P a1" + + ============================================================================== + + + Excitation is electric dipole forbidden + + Excitation is magnetic dipole forbidden + + Excitation is electric quadrupole forbidden + + + + + 1 a1" excitation + + + Total energy: -1454.134986994860 + + Excitation energy: 0.5517314314005755E-01 + + Excitation energy / eV: 1.501338255928224 + + Excitation energy / nm: 825.8248500422932 + + Excitation energy / cm^(-1): 12109.10521522237 + + + Oscillator strength: + + velocity representation: 0.000000000000000 + + length representation: 0.000000000000000 + + mixed representation: 0.000000000000000 + + + Rotatory strength: + + velocity representation: 0.000000000000000 + + velocity rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + length representation: 0.000000000000000 + + length rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 6 e" beta -5.88 7 e' beta -4.26 99.2 + + = 0.0068302325 + = 0.9931697675 + = -0.0037645069 + + 1/2 = 0.4962354931 + 1/2 = 0.5037645069 + + = 1.0000000000 + + + Change of electron number: + + 0.000000 + + + Electric transition dipole moment (velocity rep.): + + x 0.000000 Norm: 0.000000 + y 0.000000 + z 0.000000 Norm / debye: 0.000000 + + + Electric transition dipole moment (length rep.): + + x 0.000000 Norm: 0.000000 + y 0.000000 + z 0.000000 Norm / debye: 0.000000 + + + Magnetic transition dipole moment / i: + + x 0.000000 Norm: 0.000000 + y 0.000000 + z 0.000000 Norm / Bohr mag.: 0.000000 + + + Electric quadrupole transition moment: + + xx 0.000000 + yy 0.000000 1/3*trace: 0.000000 + zz 0.000000 + xy 0.000000 + xz 0.000000 Anisotropy: 0.000000 + yz 0.000000 + + + + ============================================================================== + + I R R E P a2" + + ============================================================================== + + + Excitation is electric dipole allowed + + Excitation is magnetic dipole forbidden + + Excitation is electric quadrupole forbidden + + + + + 1 a2" excitation + + + Total energy: -1454.145293653629 + + Excitation energy: 0.4486648437144659E-01 + + Excitation energy / eV: 1.220879680986547 + + Excitation energy / nm: 1015.532045764586 + + Excitation energy / cm^(-1): 9847.055088230563 + + + Oscillator strength: + + velocity representation: 0.1470985333415308E-03 + + length representation: 0.6041295478674657E-05 + + mixed representation: 0.2981049654728790E-04 + + + Rotatory strength: + + velocity representation: 0.000000000000000 + + velocity rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + length representation: 0.000000000000000 + + length rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 7 a1' beta -4.98 6 a2" beta -3.28 56.1 + 7 a1' alpha -5.20 6 a2" alpha -3.43 31.6 + 6 e" beta -5.88 7 e' beta -4.26 5.6 + + = 0.3572596439 + = 0.6427403561 + = -0.4386844860 + + 1/2 = 0.0613155140 + 1/2 = 0.9386844860 + + = 1.0000000000 + + + Change of electron number: + + 0.000000 + + + Electric transition dipole moment (velocity rep.): + + x 0.000000 Norm: 0.070128 + y 0.000000 + z -0.070128 Norm / debye: 0.178248 + + + Electric transition dipole moment (length rep.): + + x 0.000000 Norm: 0.014212 + y 0.000000 + z -0.014212 Norm / debye: 0.036123 + + + Magnetic transition dipole moment / i: + + x 0.000000 Norm: 0.000000 + y 0.000000 + z 0.000000 Norm / Bohr mag.: 0.000000 + + + Electric quadrupole transition moment: + + xx 0.000000 + yy 0.000000 1/3*trace: 0.000000 + zz 0.000000 + xy 0.000000 + xz 0.000000 Anisotropy: 0.000000 + yz 0.000000 + + + + ============================================================================== + + I R R E P e" + + ============================================================================== + + + Excitation is electric dipole forbidden + + Excitation is magnetic dipole allowed + + Excitation is electric quadrupole allowed + + + + + 1 e" excitation + + + Total energy: -1454.141269664336 + + Excitation energy: 0.4889047366366059E-01 + + Excitation energy / eV: 1.330378047800820 + + Excitation energy / nm: 931.9474581786762 + + Excitation energy / cm^(-1): 10730.21865207998 + + + Oscillator strength: + + velocity representation: 0.000000000000000 + + length representation: 0.000000000000000 + + mixed representation: 0.000000000000000 + + + Rotatory strength: + + velocity representation: 0.000000000000000 + + velocity rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + length representation: 0.000000000000000 + + length rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 7 e' alpha -4.84 6 a2" alpha -3.43 94.7 + + = 0.9537136549 + = 0.0462863451 + = -0.0139252463 + + 1/2 = 0.4860747537 + 1/2 = 0.5139252463 + + = 1.0000000000 + + + + 1st column + + Change of electron number: + + 0.000000 + + + Electric transition dipole moment (velocity rep.): + + x 0.000000 Norm: 0.000000 + y 0.000000 + z 0.000000 Norm / debye: 0.000000 + + + Electric transition dipole moment (length rep.): + + x 0.000000 Norm: 0.000000 + y 0.000000 + z 0.000000 Norm / debye: 0.000000 + + + Magnetic transition dipole moment / i: + + x 0.000000 Norm: 0.001293 + y -0.001293 + z 0.000000 Norm / Bohr mag.: 0.354246 + + + Electric quadrupole transition moment: + + xx 0.000000 + yy 0.000000 1/3*trace: 0.000000 + zz 0.000000 + xy 0.000000 + xz -0.051761 Anisotropy: 0.089653 + yz 0.000000 + + + 2nd column + + Change of electron number: + + 0.000000 + + + Electric transition dipole moment (velocity rep.): + + x 0.000000 Norm: 0.000000 + y 0.000000 + z 0.000000 Norm / debye: 0.000000 + + + Electric transition dipole moment (length rep.): + + x 0.000000 Norm: 0.000000 + y 0.000000 + z 0.000000 Norm / debye: 0.000000 + + + Magnetic transition dipole moment / i: + + x 0.001293 Norm: 0.001293 + y 0.000000 + z 0.000000 Norm / Bohr mag.: 0.354246 + + + Electric quadrupole transition moment: + + xx 0.000000 + yy 0.000000 1/3*trace: 0.000000 + zz 0.000000 + xy 0.000000 + xz 0.000000 Anisotropy: 0.089653 + yz -0.051761 + + SUMMARY OF EXCITATION ENERGIES AND DIPOLE OSCILLATOR STRENGTHS (velocity/length): + + ----------------------------------------------------------------------------------------------- + | Exc. | energy (Eh) | energy (eV) | energy (cm-1) | energy (nm) | Osc.(vel) | Osc.(len) | + ----------------------------------------------------------------------------------------------- + | 1 a1' | 0.064602 | 1.75792 | 14178.558 | 705.290 | 0.00000 | 0.00000 | + ----------------------------------------------------------------------------------------------- + Transitions are electric dipole forbidden in irrep a1' + Transitions are magnetic dipole forbidden in irrep a1' + + + ----------------------------------------------------------------------------------------------- + | Exc. | energy (Eh) | energy (eV) | energy (cm-1) | energy (nm) | Osc.(vel) | Osc.(len) | + ----------------------------------------------------------------------------------------------- + | 1 a2' | 0.062836 | 1.70985 | 13790.863 | 725.118 | 0.00000 | 0.00000 | + ----------------------------------------------------------------------------------------------- + Transitions are electric dipole forbidden in irrep a2' + + + ----------------------------------------------------------------------------------------------- + | Exc. | energy (Eh) | energy (eV) | energy (cm-1) | energy (nm) | Osc.(vel) | Osc.(len) | + ----------------------------------------------------------------------------------------------- + | 1 e' | 0.025510 | 0.69416 | 5598.744 | 1786.115 | 0.00666 | 0.00033 | + ----------------------------------------------------------------------------------------------- + Transitions are magnetic dipole forbidden in irrep e' + + + ----------------------------------------------------------------------------------------------- + | Exc. | energy (Eh) | energy (eV) | energy (cm-1) | energy (nm) | Osc.(vel) | Osc.(len) | + ----------------------------------------------------------------------------------------------- + | 1 a1" | 0.055173 | 1.50134 | 12109.105 | 825.825 | 0.00000 | 0.00000 | + ----------------------------------------------------------------------------------------------- + Transitions are electric dipole forbidden in irrep a1" + Transitions are magnetic dipole forbidden in irrep a1" + + + ----------------------------------------------------------------------------------------------- + | Exc. | energy (Eh) | energy (eV) | energy (cm-1) | energy (nm) | Osc.(vel) | Osc.(len) | + ----------------------------------------------------------------------------------------------- + | 1 a2" | 0.044866 | 1.22088 | 9847.055 | 1015.532 | 0.00015 | 0.00001 | + ----------------------------------------------------------------------------------------------- + Transitions are magnetic dipole forbidden in irrep a2" + + + ----------------------------------------------------------------------------------------------- + | Exc. | energy (Eh) | energy (eV) | energy (cm-1) | energy (nm) | Osc.(vel) | Osc.(len) | + ----------------------------------------------------------------------------------------------- + | 1 e" | 0.048890 | 1.33038 | 10730.219 | 931.947 | 0.00000 | 0.00000 | + ----------------------------------------------------------------------------------------------- + Transitions are electric dipole forbidden in irrep e" + + + + + ------------------------------------------------------------------------ + total cpu-time : 2.30 seconds + total wall-time : 8.40 seconds + ------------------------------------------------------------------------ + + **** escf : all done **** + + + 2023-01-25 00:19:24.066 + diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/escf/Al6_columns/ref_escf_output.json b/turbomoleio/testfiles/outputs/TM_v7.6/escf/Al6_columns/ref_escf_output.json new file mode 100644 index 0000000..e07561a --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/escf/Al6_columns/ref_escf_output.json @@ -0,0 +1,838 @@ +{ + "@module": "turbomoleio.output.files", + "@class": "EscfOnlyOutput", + "@version": "1.3.0", + "escf": { + "@module": "turbomoleio.output.data", + "@class": "EscfData", + "@version": "1.3.0", + "calc_type": "RPA UHF-EXCITATION", + "iterations": { + "@module": "turbomoleio.output.data", + "@class": "EscfIterationData", + "@version": "1.3.0", + "steps": [ + [ + [ + "a1'", + 0, + 0.006653544993557436 + ], + [ + "a2'", + 0, + 0.006187712856098195 + ], + [ + "e'", + 0, + 0.008162478316899516 + ], + [ + "a1\"", + 0, + 0.0111372597453264 + ], + [ + "a2\"", + 0, + 0.01312868992323971 + ], + [ + "e\"", + 0, + 0.007807096186205476 + ] + ], + [ + [ + "a1'", + 0, + 0.003598505003138214 + ], + [ + "a2'", + 0, + 0.00151466865549812 + ], + [ + "e'", + 0, + 0.004719102888037123 + ], + [ + "a1\"", + 0, + 0.003942541609303284 + ], + [ + "a2\"", + 0, + 0.008386763245585922 + ], + [ + "e\"", + 0, + 0.003670980028675391 + ] + ], + [ + [ + "a1'", + 0, + 0.001095852930325537 + ], + [ + "a2'", + 0, + 0.0003604105534641941 + ], + [ + "e'", + 0, + 0.001900591630134017 + ], + [ + "a1\"", + 0, + 0.0001636884000106233 + ], + [ + "a2\"", + 0, + 0.004315154173424182 + ], + [ + "e\"", + 0, + 0.001441282621939299 + ] + ], + [ + [ + "a1'", + 0, + 0.0002596367867987149 + ], + [ + "a2'", + 0, + 0.0001004178261695742 + ], + [ + "e'", + 0, + 0.0004246357733925653 + ], + [ + "a1\"", + 0, + 1.106763198540536e-05 + ], + [ + "a2\"", + 0, + 0.00165922914737502 + ], + [ + "e\"", + 0, + 0.0003333729188056164 + ] + ], + [ + [ + "a1'", + 0, + 0.0001168883602725443 + ], + [ + "a2'", + 0, + 1.57096156309016e-05 + ], + [ + "e'", + 0, + 0.0001276907577221173 + ], + [ + "a1\"", + 1, + 9.860324075377021e-07 + ], + [ + "a2\"", + 0, + 0.0008426678864281076 + ], + [ + "e\"", + 0, + 0.0002176992622041266 + ] + ], + [ + [ + "a1'", + 0, + 3.442713308660887e-05 + ], + [ + "a2'", + 1, + 2.156116324469686e-06 + ], + [ + "e'", + 0, + 4.985703275537566e-05 + ], + [ + "a1\"", + 1, + 9.860324075377021e-07 + ], + [ + "a2\"", + 0, + 0.0004947334125118694 + ], + [ + "e\"", + 0, + 5.04005871252618e-05 + ] + ], + [ + [ + "a1'", + 1, + 8.046175457216619e-06 + ], + [ + "a2'", + 1, + 2.156116324469686e-06 + ], + [ + "e'", + 0, + 1.464266178839974e-05 + ], + [ + "a1\"", + 1, + 9.860324075377021e-07 + ], + [ + "a2\"", + 0, + 0.0001686054648388413 + ], + [ + "e\"", + 1, + 8.658079521620624e-06 + ] + ], + [ + [ + "a1'", + 1, + 8.046175457216619e-06 + ], + [ + "a2'", + 1, + 2.156116324469686e-06 + ], + [ + "e'", + 1, + 7.501826682208339e-06 + ], + [ + "a1\"", + 1, + 9.860324075377021e-07 + ], + [ + "a2\"", + 0, + 2.202702980868813e-05 + ], + [ + "e\"", + 1, + 8.658079521620624e-06 + ] + ], + [ + [ + "a1'", + 1, + 8.046175457216619e-06 + ], + [ + "a2'", + 1, + 2.156116324469686e-06 + ], + [ + "e'", + 1, + 7.501826682208339e-06 + ], + [ + "a1\"", + 1, + 9.860324075377021e-07 + ], + [ + "a2\"", + 1, + 7.466683917848791e-06 + ], + [ + "e\"", + 1, + 8.658079521620624e-06 + ] + ] + ], + "converged": true + }, + "residuum_convergence_criterium": 1e-05, + "n_occupied_orbitals": 40, + "orbital_characterization": "scfconv=7", + "max_davidson_iter": 35, + "machine_precision": 2.22e-16, + "max_core_mem": 50.0, + "max_cao_basis_vectors": 247, + "max_treated_vectors": 16, + "irrep_data": { + "a1'": { + "tensor_space_dim": 473, + "n_roots": 1 + }, + "a2'": { + "tensor_space_dim": 417, + "n_roots": 1 + }, + "e'": { + "tensor_space_dim": 895, + "n_roots": 1 + }, + "a1\"": { + "tensor_space_dim": 418, + "n_roots": 1 + }, + "a2\"": { + "tensor_space_dim": 482, + "n_roots": 1 + }, + "e\"": { + "tensor_space_dim": 900, + "n_roots": 1 + } + }, + "gs_tot_en": -1454.190160138, + "excitations": { + "a1'": [ + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -1454.125557872422, + "osc_stre": 0.0, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 7, + "irrep": "e'", + "energy": -4.84, + "spin": "alpha" + }, + "virt_orb": { + "index": 8, + "irrep": "e'", + "energy": -3.02, + "spin": "alpha" + }, + "coeff": 99.4 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": -1.7223000000000002, + "anisotropy": 1.110013, + "moment": [ + [ + -0.944104, + 0.0, + 0.0 + ], + [ + 0.0, + -0.944104, + 0.0 + ], + [ + 0.0, + 0.0, + 0.165909 + ] + ] + } + } + ] + } + ], + "a2'": [ + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -1454.127324344177, + "osc_stre": 0.0, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 7, + "irrep": "e'", + "energy": -4.84, + "spin": "alpha" + }, + "virt_orb": { + "index": 8, + "irrep": "e'", + "energy": -3.02, + "spin": "alpha" + }, + "coeff": 98.9 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + -0.001132 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.0, + "moment": [ + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ] + ] + } + } + ] + } + ], + "e'": [ + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -1454.16465038108, + "osc_stre": 0.0003293161473237949, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 7, + "irrep": "a1'", + "energy": -4.98, + "spin": "beta" + }, + "virt_orb": { + "index": 7, + "irrep": "e'", + "energy": -4.26, + "spin": "beta" + }, + "coeff": 99.1 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.098397, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 6.816851, + "moment": [ + [ + 3.935711, + 0.0, + 0.0 + ], + [ + 0.0, + -3.935711, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ] + ] + } + }, + { + "electric_dipole": [ + 0.0, + 0.098397, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 6.816851, + "moment": [ + [ + 0.0, + -3.935711, + 0.0 + ], + [ + -3.935711, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ] + ] + } + } + ] + } + ], + "a1\"": [ + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -1454.13498699486, + "osc_stre": 0.0, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 6, + "irrep": "e\"", + "energy": -5.88, + "spin": "beta" + }, + "virt_orb": { + "index": 7, + "irrep": "e'", + "energy": -4.26, + "spin": "beta" + }, + "coeff": 99.2 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.0, + "moment": [ + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ] + ] + } + } + ] + } + ], + "a2\"": [ + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -1454.145293653629, + "osc_stre": 6.041295478674657e-06, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 7, + "irrep": "a1'", + "energy": -4.98, + "spin": "beta" + }, + "virt_orb": { + "index": 6, + "irrep": "a2\"", + "energy": -3.28, + "spin": "beta" + }, + "coeff": 56.1 + }, + { + "occ_orb": { + "index": 7, + "irrep": "a1'", + "energy": -5.2, + "spin": "alpha" + }, + "virt_orb": { + "index": 6, + "irrep": "a2\"", + "energy": -3.43, + "spin": "alpha" + }, + "coeff": 31.6 + }, + { + "occ_orb": { + "index": 6, + "irrep": "e\"", + "energy": -5.88, + "spin": "beta" + }, + "virt_orb": { + "index": 7, + "irrep": "e'", + "energy": -4.26, + "spin": "beta" + }, + "coeff": 5.6 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + -0.014212 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.0, + "moment": [ + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ] + ] + } + } + ] + } + ], + "e\"": [ + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -1454.141269664336, + "osc_stre": 0.0, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 7, + "irrep": "e'", + "energy": -4.84, + "spin": "alpha" + }, + "virt_orb": { + "index": 6, + "irrep": "a2\"", + "energy": -3.43, + "spin": "alpha" + }, + "coeff": 94.7 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + -0.001293, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.089653, + "moment": [ + [ + 0.0, + 0.0, + -0.051761 + ], + [ + 0.0, + 0.0, + 0.0 + ], + [ + -0.051761, + 0.0, + 0.0 + ] + ] + } + }, + { + "electric_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.001293, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.089653, + "moment": [ + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + -0.051761 + ], + [ + 0.0, + -0.051761, + 0.0 + ] + ] + } + } + ] + } + ] + } + }, + "run": { + "@module": "turbomoleio.output.data", + "@class": "RunData", + "@version": "1.3.0", + "host": "frontal3", + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:19:15.731000" + }, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:19:24.066000" + }, + "cpu_time": 2.3, + "wall_time": 8.4 + }, + "tm": { + "@module": "turbomoleio.output.data", + "@class": "TurbomoleData", + "@version": "1.3.0", + "version": "7.6", + "build": null, + "executable": "escf" + } +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/escf/Al6_columns/ref_output.json b/turbomoleio/testfiles/outputs/TM_v7.6/escf/Al6_columns/ref_output.json new file mode 100644 index 0000000..952e158 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/escf/Al6_columns/ref_output.json @@ -0,0 +1,1012 @@ +{ + "@module": "turbomoleio.output.files", + "@class": "EscfOutput", + "@version": "1.3.0", + "dft": { + "@module": "turbomoleio.output.data", + "@class": "DFTData", + "@version": "1.3.0", + "functional": { + "@module": "turbomoleio.output.data", + "@class": "FunctionalData", + "@version": "1.3.0", + "msg": "B-P86 functional\n exchange: LDA + Becke (B88)\n correlation: LDA (VWN) + Perdew (P86)", + "name": "b-p", + "func_type": "GGA", + "xcfun": null + }, + "ri": { + "@module": "turbomoleio.output.data", + "@class": "RiData", + "@version": "1.3.0", + "ricore": 40, + "marij": false, + "rij_memory": 2, + "rik": false + }, + "spherical_gridsize": 3, + "gridpoints": 302, + "dispersion_correction": null + }, + "escf": { + "@module": "turbomoleio.output.data", + "@class": "EscfData", + "@version": "1.3.0", + "calc_type": "RPA UHF-EXCITATION", + "iterations": { + "@module": "turbomoleio.output.data", + "@class": "EscfIterationData", + "@version": "1.3.0", + "steps": [ + [ + [ + "a1'", + 0, + 0.006653544993557436 + ], + [ + "a2'", + 0, + 0.006187712856098195 + ], + [ + "e'", + 0, + 0.008162478316899516 + ], + [ + "a1\"", + 0, + 0.0111372597453264 + ], + [ + "a2\"", + 0, + 0.01312868992323971 + ], + [ + "e\"", + 0, + 0.007807096186205476 + ] + ], + [ + [ + "a1'", + 0, + 0.003598505003138214 + ], + [ + "a2'", + 0, + 0.00151466865549812 + ], + [ + "e'", + 0, + 0.004719102888037123 + ], + [ + "a1\"", + 0, + 0.003942541609303284 + ], + [ + "a2\"", + 0, + 0.008386763245585922 + ], + [ + "e\"", + 0, + 0.003670980028675391 + ] + ], + [ + [ + "a1'", + 0, + 0.001095852930325537 + ], + [ + "a2'", + 0, + 0.0003604105534641941 + ], + [ + "e'", + 0, + 0.001900591630134017 + ], + [ + "a1\"", + 0, + 0.0001636884000106233 + ], + [ + "a2\"", + 0, + 0.004315154173424182 + ], + [ + "e\"", + 0, + 0.001441282621939299 + ] + ], + [ + [ + "a1'", + 0, + 0.0002596367867987149 + ], + [ + "a2'", + 0, + 0.0001004178261695742 + ], + [ + "e'", + 0, + 0.0004246357733925653 + ], + [ + "a1\"", + 0, + 1.106763198540536e-05 + ], + [ + "a2\"", + 0, + 0.00165922914737502 + ], + [ + "e\"", + 0, + 0.0003333729188056164 + ] + ], + [ + [ + "a1'", + 0, + 0.0001168883602725443 + ], + [ + "a2'", + 0, + 1.57096156309016e-05 + ], + [ + "e'", + 0, + 0.0001276907577221173 + ], + [ + "a1\"", + 1, + 9.860324075377021e-07 + ], + [ + "a2\"", + 0, + 0.0008426678864281076 + ], + [ + "e\"", + 0, + 0.0002176992622041266 + ] + ], + [ + [ + "a1'", + 0, + 3.442713308660887e-05 + ], + [ + "a2'", + 1, + 2.156116324469686e-06 + ], + [ + "e'", + 0, + 4.985703275537566e-05 + ], + [ + "a1\"", + 1, + 9.860324075377021e-07 + ], + [ + "a2\"", + 0, + 0.0004947334125118694 + ], + [ + "e\"", + 0, + 5.04005871252618e-05 + ] + ], + [ + [ + "a1'", + 1, + 8.046175457216619e-06 + ], + [ + "a2'", + 1, + 2.156116324469686e-06 + ], + [ + "e'", + 0, + 1.464266178839974e-05 + ], + [ + "a1\"", + 1, + 9.860324075377021e-07 + ], + [ + "a2\"", + 0, + 0.0001686054648388413 + ], + [ + "e\"", + 1, + 8.658079521620624e-06 + ] + ], + [ + [ + "a1'", + 1, + 8.046175457216619e-06 + ], + [ + "a2'", + 1, + 2.156116324469686e-06 + ], + [ + "e'", + 1, + 7.501826682208339e-06 + ], + [ + "a1\"", + 1, + 9.860324075377021e-07 + ], + [ + "a2\"", + 0, + 2.202702980868813e-05 + ], + [ + "e\"", + 1, + 8.658079521620624e-06 + ] + ], + [ + [ + "a1'", + 1, + 8.046175457216619e-06 + ], + [ + "a2'", + 1, + 2.156116324469686e-06 + ], + [ + "e'", + 1, + 7.501826682208339e-06 + ], + [ + "a1\"", + 1, + 9.860324075377021e-07 + ], + [ + "a2\"", + 1, + 7.466683917848791e-06 + ], + [ + "e\"", + 1, + 8.658079521620624e-06 + ] + ] + ], + "converged": true + }, + "residuum_convergence_criterium": 1e-05, + "n_occupied_orbitals": 40, + "orbital_characterization": "scfconv=7", + "max_davidson_iter": 35, + "machine_precision": 2.22e-16, + "max_core_mem": 50.0, + "max_cao_basis_vectors": 247, + "max_treated_vectors": 16, + "irrep_data": { + "a1'": { + "tensor_space_dim": 473, + "n_roots": 1 + }, + "a2'": { + "tensor_space_dim": 417, + "n_roots": 1 + }, + "e'": { + "tensor_space_dim": 895, + "n_roots": 1 + }, + "a1\"": { + "tensor_space_dim": 418, + "n_roots": 1 + }, + "a2\"": { + "tensor_space_dim": 482, + "n_roots": 1 + }, + "e\"": { + "tensor_space_dim": 900, + "n_roots": 1 + } + }, + "gs_tot_en": -1454.190160138, + "excitations": { + "a1'": [ + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -1454.125557872422, + "osc_stre": 0.0, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 7, + "irrep": "e'", + "energy": -4.84, + "spin": "alpha" + }, + "virt_orb": { + "index": 8, + "irrep": "e'", + "energy": -3.02, + "spin": "alpha" + }, + "coeff": 99.4 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": -1.7223000000000002, + "anisotropy": 1.110013, + "moment": [ + [ + -0.944104, + 0.0, + 0.0 + ], + [ + 0.0, + -0.944104, + 0.0 + ], + [ + 0.0, + 0.0, + 0.165909 + ] + ] + } + } + ] + } + ], + "a2'": [ + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -1454.127324344177, + "osc_stre": 0.0, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 7, + "irrep": "e'", + "energy": -4.84, + "spin": "alpha" + }, + "virt_orb": { + "index": 8, + "irrep": "e'", + "energy": -3.02, + "spin": "alpha" + }, + "coeff": 98.9 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + -0.001132 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.0, + "moment": [ + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ] + ] + } + } + ] + } + ], + "e'": [ + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -1454.16465038108, + "osc_stre": 0.0003293161473237949, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 7, + "irrep": "a1'", + "energy": -4.98, + "spin": "beta" + }, + "virt_orb": { + "index": 7, + "irrep": "e'", + "energy": -4.26, + "spin": "beta" + }, + "coeff": 99.1 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.098397, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 6.816851, + "moment": [ + [ + 3.935711, + 0.0, + 0.0 + ], + [ + 0.0, + -3.935711, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ] + ] + } + }, + { + "electric_dipole": [ + 0.0, + 0.098397, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 6.816851, + "moment": [ + [ + 0.0, + -3.935711, + 0.0 + ], + [ + -3.935711, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ] + ] + } + } + ] + } + ], + "a1\"": [ + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -1454.13498699486, + "osc_stre": 0.0, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 6, + "irrep": "e\"", + "energy": -5.88, + "spin": "beta" + }, + "virt_orb": { + "index": 7, + "irrep": "e'", + "energy": -4.26, + "spin": "beta" + }, + "coeff": 99.2 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.0, + "moment": [ + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ] + ] + } + } + ] + } + ], + "a2\"": [ + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -1454.145293653629, + "osc_stre": 6.041295478674657e-06, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 7, + "irrep": "a1'", + "energy": -4.98, + "spin": "beta" + }, + "virt_orb": { + "index": 6, + "irrep": "a2\"", + "energy": -3.28, + "spin": "beta" + }, + "coeff": 56.1 + }, + { + "occ_orb": { + "index": 7, + "irrep": "a1'", + "energy": -5.2, + "spin": "alpha" + }, + "virt_orb": { + "index": 6, + "irrep": "a2\"", + "energy": -3.43, + "spin": "alpha" + }, + "coeff": 31.6 + }, + { + "occ_orb": { + "index": 6, + "irrep": "e\"", + "energy": -5.88, + "spin": "beta" + }, + "virt_orb": { + "index": 7, + "irrep": "e'", + "energy": -4.26, + "spin": "beta" + }, + "coeff": 5.6 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + -0.014212 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.0, + "moment": [ + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ] + ] + } + } + ] + } + ], + "e\"": [ + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -1454.141269664336, + "osc_stre": 0.0, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 7, + "irrep": "e'", + "energy": -4.84, + "spin": "alpha" + }, + "virt_orb": { + "index": 6, + "irrep": "a2\"", + "energy": -3.43, + "spin": "alpha" + }, + "coeff": 94.7 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + -0.001293, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.089653, + "moment": [ + [ + 0.0, + 0.0, + -0.051761 + ], + [ + 0.0, + 0.0, + 0.0 + ], + [ + -0.051761, + 0.0, + 0.0 + ] + ] + } + }, + { + "electric_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.001293, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.089653, + "moment": [ + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + -0.051761 + ], + [ + 0.0, + -0.051761, + 0.0 + ] + ] + } + } + ] + } + ] + } + }, + "geometry": { + "@module": "turbomoleio.output.data", + "@class": "GeometryData", + "@version": "1.3.0", + "center_of_mass": [ + 0.0, + 0.0, + 0.0 + ], + "center_of_charge": [ + 0.0, + 0.0, + 0.0 + ], + "molecule": { + "@module": "pymatgen.core.structure", + "@class": "Molecule", + "charge": 0.0, + "spin_multiplicity": 1, + "sites": [ + { + "name": "Al", + "species": [ + { + "element": "Al", + "occu": 1 + } + ], + "xyz": [ + 1.541837630348155, + 0.0, + 1.3116071517986991 + ], + "properties": {} + }, + { + "name": "Al", + "species": [ + { + "element": "Al", + "occu": 1 + } + ], + "xyz": [ + -0.7709188125281915, + 1.3352705543506724, + 1.3116071517986991 + ], + "properties": {} + }, + { + "name": "Al", + "species": [ + { + "element": "Al", + "occu": 1 + } + ], + "xyz": [ + -0.7709188125281915, + -1.3352705543506724, + 1.3116071517986991 + ], + "properties": {} + }, + { + "name": "Al", + "species": [ + { + "element": "Al", + "occu": 1 + } + ], + "xyz": [ + 1.541837630348155, + 0.0, + -1.3116071517986991 + ], + "properties": {} + }, + { + "name": "Al", + "species": [ + { + "element": "Al", + "occu": 1 + } + ], + "xyz": [ + -0.7709188125281915, + -1.3352705543506724, + -1.3116071517986991 + ], + "properties": {} + }, + { + "name": "Al", + "species": [ + { + "element": "Al", + "occu": 1 + } + ], + "xyz": [ + -0.7709188125281915, + 1.3352705543506724, + -1.3116071517986991 + ], + "properties": {} + } + ] + } + }, + "basis": { + "@module": "turbomoleio.output.data", + "@class": "BasisData", + "@version": "1.3.0", + "basis_per_specie": { + "al": "def-SV(P)" + }, + "aux_basis_per_specie": {}, + "number_scf_basis_func": 108, + "number_scf_aux_basis_func": 186 + }, + "run": { + "@module": "turbomoleio.output.data", + "@class": "RunData", + "@version": "1.3.0", + "host": "frontal3", + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:19:15.731000" + }, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:19:24.066000" + }, + "cpu_time": 2.3, + "wall_time": 8.4 + }, + "tm": { + "@module": "turbomoleio.output.data", + "@class": "TurbomoleData", + "@version": "1.3.0", + "version": "7.6", + "build": null, + "executable": "escf" + }, + "cosmo": null, + "integral": { + "@module": "turbomoleio.output.data", + "@class": "IntegralData", + "@version": "1.3.0", + "integral_neglect_threshold": 2.9e-11, + "thize": 1e-05, + "thime": 5 + }, + "symmetry": { + "@module": "turbomoleio.output.data", + "@class": "SymmetryData", + "@version": "1.3.0", + "symbol": "d3h", + "n_reps": 6, + "reps": [ + "a1'", + "a2'", + "e'", + "a1\"", + "a2\"", + "e\"" + ] + } +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/escf/Al6_columns/ref_parser.json b/turbomoleio/testfiles/outputs/TM_v7.6/escf/Al6_columns/ref_parser.json new file mode 100644 index 0000000..8c4b4bf --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/escf/Al6_columns/ref_parser.json @@ -0,0 +1,939 @@ +{ + "all_done": true, + "header": { + "executable": "escf", + "host": "frontal3", + "tm_version": "7.6", + "tm_build": null, + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:19:15.731000" + } + }, + "centers": { + "center_of_mass": [ + 0.0, + 0.0, + 0.0 + ], + "center_of_charge": [ + 0.0, + 0.0, + 0.0 + ] + }, + "coordinates": { + "coords": [ + [ + 2.91365085, + 0.0, + 2.4785783 + ], + [ + -1.45682542, + 2.52329565, + 2.4785783 + ], + [ + -1.45682542, + -2.52329565, + 2.4785783 + ], + [ + 2.91365085, + 0.0, + -2.4785783 + ], + [ + -1.45682542, + -2.52329565, + -2.4785783 + ], + [ + -1.45682542, + 2.52329565, + -2.4785783 + ] + ], + "species": [ + "al", + "al", + "al", + "al", + "al", + "al" + ], + "charges": [ + 13.0, + 13.0, + 13.0, + 13.0, + 13.0, + 13.0 + ], + "isotopes": [ + 0, + 0, + 0, + 0, + 0, + 0 + ] + }, + "basis": { + "basis_per_specie": { + "al": "def-SV(P)" + }, + "aux_basis_per_specie": {}, + "number_scf_basis_func": 108, + "number_scf_aux_basis_func": 186 + }, + "symmetry": { + "symbol": "d3h", + "n_reps": 6, + "reps": [ + "a1'", + "a2'", + "e'", + "a1\"", + "a2\"", + "e\"" + ] + }, + "cosmo_header": null, + "density_functional_data": { + "functional_msg": "B-P86 functional\n exchange: LDA + Becke (B88)\n correlation: LDA (VWN) + Perdew (P86)", + "functional_name": "b-p", + "functional_type": "GGA", + "xcfun": null, + "spherical_gridsize": 3, + "gridpoints": 302 + }, + "rij_info": { + "marij": false, + "rij_memory": 2, + "rik": false, + "ricore": 40 + }, + "dftd": null, + "pre_scf_run": null, + "scf_iterations": null, + "scf_energies": null, + "cosmo_results": null, + "electrostatic_moments": null, + "timings": { + "cpu_time": 2.3, + "wall_time": 8.4, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:19:24.066000" + } + }, + "s2": null, + "is_uhf": false, + "fermi": null, + "integral": { + "integral_neglect_threshold": 2.9e-11, + "thize": 1e-05, + "thime": 5 + }, + "pre_escf_run": { + "calc_type": "RPA UHF-EXCITATION", + "residuum_convergence_criterium": 1e-05, + "n_occupied_orbitals": 40, + "orbital_characterization": "scfconv=7", + "max_davidson_iter": 35, + "machine_precision": 2.22e-16, + "max_core_mem": 50.0, + "max_cao_basis_vectors": 247, + "max_treated_vectors": 16, + "irrep_data": { + "a1'": { + "tensor_space_dim": 473, + "n_roots": 1 + }, + "a2'": { + "tensor_space_dim": 417, + "n_roots": 1 + }, + "e'": { + "tensor_space_dim": 895, + "n_roots": 1 + }, + "a1\"": { + "tensor_space_dim": 418, + "n_roots": 1 + }, + "a2\"": { + "tensor_space_dim": 482, + "n_roots": 1 + }, + "e\"": { + "tensor_space_dim": 900, + "n_roots": 1 + } + } + }, + "escf_iterations": { + "steps": [ + [ + [ + "a1'", + 0, + 0.006653544993557436 + ], + [ + "a2'", + 0, + 0.006187712856098195 + ], + [ + "e'", + 0, + 0.008162478316899516 + ], + [ + "a1\"", + 0, + 0.0111372597453264 + ], + [ + "a2\"", + 0, + 0.01312868992323971 + ], + [ + "e\"", + 0, + 0.007807096186205476 + ] + ], + [ + [ + "a1'", + 0, + 0.003598505003138214 + ], + [ + "a2'", + 0, + 0.00151466865549812 + ], + [ + "e'", + 0, + 0.004719102888037123 + ], + [ + "a1\"", + 0, + 0.003942541609303284 + ], + [ + "a2\"", + 0, + 0.008386763245585922 + ], + [ + "e\"", + 0, + 0.003670980028675391 + ] + ], + [ + [ + "a1'", + 0, + 0.001095852930325537 + ], + [ + "a2'", + 0, + 0.0003604105534641941 + ], + [ + "e'", + 0, + 0.001900591630134017 + ], + [ + "a1\"", + 0, + 0.0001636884000106233 + ], + [ + "a2\"", + 0, + 0.004315154173424182 + ], + [ + "e\"", + 0, + 0.001441282621939299 + ] + ], + [ + [ + "a1'", + 0, + 0.0002596367867987149 + ], + [ + "a2'", + 0, + 0.0001004178261695742 + ], + [ + "e'", + 0, + 0.0004246357733925653 + ], + [ + "a1\"", + 0, + 1.106763198540536e-05 + ], + [ + "a2\"", + 0, + 0.00165922914737502 + ], + [ + "e\"", + 0, + 0.0003333729188056164 + ] + ], + [ + [ + "a1'", + 0, + 0.0001168883602725443 + ], + [ + "a2'", + 0, + 1.57096156309016e-05 + ], + [ + "e'", + 0, + 0.0001276907577221173 + ], + [ + "a1\"", + 1, + 9.860324075377021e-07 + ], + [ + "a2\"", + 0, + 0.0008426678864281076 + ], + [ + "e\"", + 0, + 0.0002176992622041266 + ] + ], + [ + [ + "a1'", + 0, + 3.442713308660887e-05 + ], + [ + "a2'", + 1, + 2.156116324469686e-06 + ], + [ + "e'", + 0, + 4.985703275537566e-05 + ], + [ + "a1\"", + 1, + 9.860324075377021e-07 + ], + [ + "a2\"", + 0, + 0.0004947334125118694 + ], + [ + "e\"", + 0, + 5.04005871252618e-05 + ] + ], + [ + [ + "a1'", + 1, + 8.046175457216619e-06 + ], + [ + "a2'", + 1, + 2.156116324469686e-06 + ], + [ + "e'", + 0, + 1.464266178839974e-05 + ], + [ + "a1\"", + 1, + 9.860324075377021e-07 + ], + [ + "a2\"", + 0, + 0.0001686054648388413 + ], + [ + "e\"", + 1, + 8.658079521620624e-06 + ] + ], + [ + [ + "a1'", + 1, + 8.046175457216619e-06 + ], + [ + "a2'", + 1, + 2.156116324469686e-06 + ], + [ + "e'", + 1, + 7.501826682208339e-06 + ], + [ + "a1\"", + 1, + 9.860324075377021e-07 + ], + [ + "a2\"", + 0, + 2.202702980868813e-05 + ], + [ + "e\"", + 1, + 8.658079521620624e-06 + ] + ], + [ + [ + "a1'", + 1, + 8.046175457216619e-06 + ], + [ + "a2'", + 1, + 2.156116324469686e-06 + ], + [ + "e'", + 1, + 7.501826682208339e-06 + ], + [ + "a1\"", + 1, + 9.860324075377021e-07 + ], + [ + "a2\"", + 1, + 7.466683917848791e-06 + ], + [ + "e\"", + 1, + 8.658079521620624e-06 + ] + ] + ], + "converged": true + }, + "escf_gs_total_en": -1454.190160138, + "escf_excitations": { + "a1'": [ + { + "tot_en": -1454.125557872422, + "osc_stre": 0.0, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 7, + "irrep": "e'", + "energy": -4.84, + "spin": "alpha" + }, + "virt_orb": { + "index": 8, + "irrep": "e'", + "energy": -3.02, + "spin": "alpha" + }, + "coeff": 99.4 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": -1.7223000000000002, + "anisotropy": 1.110013, + "moment": [ + [ + -0.944104, + 0.0, + 0.0 + ], + [ + 0.0, + -0.944104, + 0.0 + ], + [ + 0.0, + 0.0, + 0.165909 + ] + ] + } + } + ] + } + ], + "a2'": [ + { + "tot_en": -1454.127324344177, + "osc_stre": 0.0, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 7, + "irrep": "e'", + "energy": -4.84, + "spin": "alpha" + }, + "virt_orb": { + "index": 8, + "irrep": "e'", + "energy": -3.02, + "spin": "alpha" + }, + "coeff": 98.9 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + -0.001132 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.0, + "moment": [ + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ] + ] + } + } + ] + } + ], + "e'": [ + { + "tot_en": -1454.16465038108, + "osc_stre": 0.0003293161473237949, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 7, + "irrep": "a1'", + "energy": -4.98, + "spin": "beta" + }, + "virt_orb": { + "index": 7, + "irrep": "e'", + "energy": -4.26, + "spin": "beta" + }, + "coeff": 99.1 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.098397, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 6.816851, + "moment": [ + [ + 3.935711, + 0.0, + 0.0 + ], + [ + 0.0, + -3.935711, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ] + ] + } + }, + { + "electric_dipole": [ + 0.0, + 0.098397, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 6.816851, + "moment": [ + [ + 0.0, + -3.935711, + 0.0 + ], + [ + -3.935711, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ] + ] + } + } + ] + } + ], + "a1\"": [ + { + "tot_en": -1454.13498699486, + "osc_stre": 0.0, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 6, + "irrep": "e\"", + "energy": -5.88, + "spin": "beta" + }, + "virt_orb": { + "index": 7, + "irrep": "e'", + "energy": -4.26, + "spin": "beta" + }, + "coeff": 99.2 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.0, + "moment": [ + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ] + ] + } + } + ] + } + ], + "a2\"": [ + { + "tot_en": -1454.145293653629, + "osc_stre": 6.041295478674657e-06, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 7, + "irrep": "a1'", + "energy": -4.98, + "spin": "beta" + }, + "virt_orb": { + "index": 6, + "irrep": "a2\"", + "energy": -3.28, + "spin": "beta" + }, + "coeff": 56.1 + }, + { + "occ_orb": { + "index": 7, + "irrep": "a1'", + "energy": -5.2, + "spin": "alpha" + }, + "virt_orb": { + "index": 6, + "irrep": "a2\"", + "energy": -3.43, + "spin": "alpha" + }, + "coeff": 31.6 + }, + { + "occ_orb": { + "index": 6, + "irrep": "e\"", + "energy": -5.88, + "spin": "beta" + }, + "virt_orb": { + "index": 7, + "irrep": "e'", + "energy": -4.26, + "spin": "beta" + }, + "coeff": 5.6 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + -0.014212 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.0, + "moment": [ + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ] + ] + } + } + ] + } + ], + "e\"": [ + { + "tot_en": -1454.141269664336, + "osc_stre": 0.0, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 7, + "irrep": "e'", + "energy": -4.84, + "spin": "alpha" + }, + "virt_orb": { + "index": 6, + "irrep": "a2\"", + "energy": -3.43, + "spin": "alpha" + }, + "coeff": 94.7 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + -0.001293, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.089653, + "moment": [ + [ + 0.0, + 0.0, + -0.051761 + ], + [ + 0.0, + 0.0, + 0.0 + ], + [ + -0.051761, + 0.0, + 0.0 + ] + ] + } + }, + { + "electric_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.001293, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.089653, + "moment": [ + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + -0.051761 + ], + [ + 0.0, + -0.051761, + 0.0 + ] + ] + } + } + ] + } + ] + }, + "rdgrad_memory": null, + "gradient": null, + "egrad_excited_state": null, + "statpt_info": null, + "relax_info": null, + "relax_gradient_values": null, + "relax_conv_info": null, + "aoforce_numerical_integration": null, + "aoforce_analysis": null, + "mp2_results": { + "energy": null + }, + "riper_scf_energies": null, + "periodicity_data": null +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/escf/h2o_ridft_rpat/escf.log b/turbomoleio/testfiles/outputs/TM_v7.6/escf/h2o_ridft_rpat/escf.log new file mode 100644 index 0000000..8ea426e --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/escf/h2o_ridft_rpat/escf.log @@ -0,0 +1,3734 @@ + + escf (frontal3) : TURBOMOLE rev. V7-6 19 Oct 2021 at 10:10:11 compiled Oct 19th 2021 + Copyright (C) 2021 TURBOMOLE GmbH, Karlsruhe + + + 2023-01-25 00:19:08.451 + + + + + e s c f + + TURBOMOLE GmbH + + + integral direct evaluation of + + * excitation energies and transition moments + * dynamic response properties + * stabilities + + + + references (see also programs dscf and ridft) + + implementation and benchmarks (review) + F. Furche and D. Rappoport, + "Density functional methods for excited states: + equilibrium structure and electronic spectra", + ch. III of "Computational Photochemistry", ed. by + M. Olivucci, vol. 16 of "Theoretical and Computational + Chemistry", Elsevier, Amsterdam, 2005. + + Bethe-Salpeter equation + K. Krause and W. Klopper, + J. Comput. Chem. 38 (2017) 383. + + 2c BSE, GW and hybrid TD-DFT + C. Holzer and W. Klopper + J. Chem. Phys. 150, 204116 (2019) + + nonorthonormal Krylov space methods + F. Furche, B. T. Krull, B. D. Nguyen, and J. Kwon, + J. Chem. Phys. 144 (2016), 174105. + + two-component GW quasi particle energies + M. Kuehn and F. Weigend, + J. Chem. Theory Comput. 11 (2015), 969. + + two-component TDDFT with spin-orbit coupling + M. Kuehn and F. Weigend, + J. Chem. Theory Comput. 9 (2013), 5341. + M. Kuehn and F. Weigend, + J. Chem. Phys. 142 (2015), 034116. + + GW quasi particle energies + M. J. van Setten, F. Weigend, and F. Evers, + J. Chem. Theory Comput. 9 (2013), 232. + + Fast GW methods: RIGW, contour deformation + J. Chem. Phys. 150, 204116 (2019) + + current-density dependent meta-GGA Linear Response + J. E. Bates and F. Furche, + J. Chem. Phys. 137 (2012), 164105. + + spin-flip method + M. Kuehn and F. Weigend, + Chem. Phys. Chem. 12 (2011), 3331. + + RI-J method + R. Bauernschmitt, M. Haeser, O. Treutler, and R. Ahlrichs, + Chem. Phys. Lett. 264 (1997), 573. + + density functional implementation + R. Bauernschmitt and R. Ahlrichs, + Chem. Phys. Lett. 256 (1996), 454. + R. Bauernschmitt and R. Ahlrichs, + J. Chem. Phys. 104 (1996), 9047. + + UHF extension (RPA and CIS) + C. Ochsenfeld, J. Gauss, and R. Ahlrichs, + J. Chem. Phys. 103 (1995), 7401. + + integral direct algorithm + H. Weiss, R. Ahlrichs, and M. Haeser, + J. Chem. Phys. 99 (1993), 1262. + + Seminumerical and pseudospectral algorithms + C. Holzer, J. Chem. Phys. 153 (2020), 184115. + + Two-component static/dynamic polarizabilities, + and relativistic damped-response approach, + polarizabilities and damped response at GW-BSE level + M. Kehry, Y. J. Franzke, C. Holzer, and W. Klopper, + Mol. Phys. 118 (2020), e1755064 + + Nuclear spin-spin coupling constants + F. Mack, C. J. Schattenberg, M. Kaupp, F. Weigend, + J. Phys. Chem. A 2020, 124, 41, 8529 + + + + + + +--------------------------------------------------+ + | Atomic coordinate, charge and isotop information | + +--------------------------------------------------+ + + atomic coordinates atom charge isotop + 0.00000000 0.00000000 -0.72557892 o 8.000 0 + 1.41713421 0.00000000 0.36278946 h 1.000 0 + -1.41713421 0.00000000 0.36278946 h 1.000 0 + + center of nuclear mass : 0.00000000 0.00000000 -0.60378908 + center of nuclear charge: 0.00000000 0.00000000 -0.50790525 + + ************************************************************************* + ridft_escf + ************************************************************************* + + + + +--------------------------------------------------+ + | basis set information | + +--------------------------------------------------+ + + we will work with the 1s 3p 5d 7f 9g ... basis set + ...i.e. with spherical basis functions... + + type atoms prim cont basis + --------------------------------------------------------------------------- + o 1 24 14 def-SV(P) [3s2p1d|7s4p1d] + h 2 4 2 def-SV(P) [2s|4s] + --------------------------------------------------------------------------- + total: 3 32 18 + --------------------------------------------------------------------------- + + total number of primitive shells : 16 + total number of contracted shells : 10 + total number of cartesian basis functions : 19 + total number of SCF-basis functions : 18 + + + residuum convergence criterium : 0.10E-04 + + + integral neglect threshold : 0.33E-10 + integral storage threshold THIZE : 0.10E-04 + integral storage threshold THIME : 5 + + + FOUND RI-J FLAG ! + + + AUXILIARY BASIS SET information: + + we will work with the 1s 3p 5d 7f 9g ... basis set + ...i.e. with spherical basis functions... + + type atoms prim cont basis + --------------------------------------------------------------------------- + o 1 39 37 def-SV(P) [6s3p3d1f|8s3p3d1f] + h 2 10 5 def-SV(P) [2s1p|4s2p] + --------------------------------------------------------------------------- + total: 3 59 47 + --------------------------------------------------------------------------- + + total number of primitive shells : 21 + total number of contracted shells : 19 + total number of cartesian basis functions : 53 + total number of SCF-basis functions : 47 + + RPA TRIPLET-EXCITATION-CALCULATION + + FOUND DFT-FLAG ! + + THERE IS NO NEED FOR RI IN TRIPLET CALCULATIONS. + RI-FLAG IS SWITCHED OFF + + symmetry group of the molecule : c2v + + the group has the following generators : + c2(z) + mirror plane sigma(xz) + + 4 symmetry operations found + + there are 4 real representations : a1 a2 b1 b2 + + maximum number of shells which are related by symmetry : 2 + + IRREPs of excited states : a1 a2 b1 b2 + + mo occupation : + irrep mo's occupied + a1 9 3 + a2 1 0 + b1 5 1 + b2 3 1 + + number of basis functions : 18 + number of occupied orbitals : 5 + + + ------------------ + density functional + ------------------ + B-P86 functional + exchange: LDA + Becke (B88) + correlation: LDA (VWN) + Perdew (P86) + + iterations will be done with small grid + + spherical integration : Lebedev's spherical grid + spherical gridsize : 3 + i.e. gridpoints : 302 + value for diffuse not defined + radial integration : Chebyshev 2nd kind (scaling 3) + radial gridsize : 3 + integration cells : 2 + partition function : becke + partition sharpness : 3 + + + biggest AO integral is expected to be 4.776656448 + MOs are in ASCII format ! + + + reading orbital data $scfmo from file mos + orbital characterization : scfconv=7 + preparing DFT numerical integration .... + Overall gridpoints after grid construction = 1098 + + Calculating ground state density on molecular grid + + Integral of ground state density: N = 9.999336695654957 + + + all orbitals will be included in the transformation + + number of non-frozen orbitals : 18 + number of non-frozen occupied orbitals : 5 + + + + dimension of super-tensorspace: 1 + + IRREP tensor space dimension number of roots + + a1 24 10 + a2 9 9 + b1 19 10 + b2 13 10 + + maximum number of Davidson iterations set to 35 + + + machine precision: 2.22D-16 + + + logfile trip_a1 will be constructed + + logfile trip_a2 will be constructed + + logfile trip_b1 will be constructed + + logfile trip_b2 will be constructed + + + Nonorthonormal Krylov Space Iteration + + + total number of roots to be determined: 39 + + + maximum core memory set to 500 MB, + corresponding to 155298 vectors in CAO basis + + + maximum number of simultaneously treated vectors (including degeneracy): 58 + + + Iteration IRREP Converged Max. Euclidean + roots residual norm + + 1 a1 0 1.246374408123256D-01 + a2 9 7.348166357137622D-15 + b1 0 9.181206046462143D-02 + b2 10 5.215985075398134D-14 + + 2 a1 10 7.745012815871526D-14 + a2 9 7.348166357137622D-15 + b1 10 4.175781234104372D-14 + b2 10 5.215985075398134D-14 + + + converged! + + + Switching to fine grid + + preparing DFT numerical integration .... + Overall gridpoints after grid construction = 3891 + + Calculating ground state density on molecular grid + + Integral of ground state density: N = 9.999998376409369 + + + + Iteration IRREP Converged Max. Euclidean + roots residual norm + + 3 a1 0 6.403940522260189D-04 + a2 9 1.706585544322206D-13 + b1 0 5.891873443448800D-04 + b2 0 6.789901303557023D-04 + + + NOTE: Residual norms are larger than 1.00D-05 due to mgrid option! + + Eigenpairs written on logfile trip_a1 + + Eigenpairs written on logfile trip_a2 + + Eigenpairs written on logfile trip_b1 + + Eigenpairs written on logfile trip_b2 + + + + IRREP Vector Eigenvalue Euclidean residual norm + + a1 1 1.054766232029952D-01 1.298582917670337D-04 + 2 3.026046994133771D-01 1.099738037869553D-04 + 3 7.902543512639740D-01 4.552205590134016D-04 + 4 8.603798351365488D-01 2.827655638789335D-04 + 5 9.460562442523243D-01 1.199758740899852D-04 + 6 1.009429971377638D+00 6.403940522260189D-04 + 7 1.224509922904209D+00 3.748359443143058D-04 + 8 1.929758968467143D+00 5.798912085939602D-04 + 9 2.058098921634086D+00 5.012881530584084D-04 + 10 2.252781671673850D+00 4.300667852283489D-04 + + a2 1 1.120765400423354D-01 4.192021994801469D-15 + 2 5.842058186572742D-01 2.753518185042836D-15 + 3 1.474312621880384D+00 2.122997960535288D-15 + 4 1.744482247493362D+00 2.945476630319524D-15 + 5 7.604343181306200D+00 2.891828390794714D-15 + 6 8.869543285291950D+00 4.312910958139946D-15 + 7 1.029641062360514D+01 4.097264453572921D-15 + 8 1.113149001816987D+01 6.915470571309905D-15 + 9 4.512593472863269D+02 1.706585544322206D-13 + + b1 1 1.605557952129637D-01 8.148283965698304D-05 + 2 2.371925240336418D-01 9.531491512322061D-05 + 3 6.674184946834937D-01 7.109858668619430D-05 + 4 9.949683721775129D-01 1.947036479943374D-04 + 5 1.113098911396365D+00 8.868319995998766D-05 + 6 1.646768743710409D+00 5.636386120457392D-04 + 7 1.802348963498977D+00 1.206856050510259D-04 + 8 2.023160131345041D+00 1.332156682568466D-04 + 9 2.407356923953469D+00 5.891873443448800D-04 + 10 3.593079626443410D+00 5.377704909202448D-04 + + b2 1 6.456329812620863D-02 1.032952383281104D-04 + 2 7.109580265112532D-01 1.761158944801701D-04 + 3 1.128474645000850D+00 1.115067194593344D-04 + 4 1.327964921954495D+00 8.370100975008556D-05 + 5 1.677386384514268D+00 4.471284194887268D-04 + 6 3.022530110793249D+00 3.789684154731296D-04 + 7 7.060126011037987D+00 6.351851316669963D-04 + 8 7.611274156690730D+00 5.635921107676546D-04 + 9 8.452939957810736D+00 9.203724889538071D-05 + 10 9.029770179198403D+00 6.789901303557023D-04 + + + + + + + Selection rules for point group c2v + + + Subduction with respect to c2v : + + Polar vector representation: a1, b1, b2 + + Axial vector representation: a2, b1, b2 + + Symmetric second rank tensor representation: a1, a2, b1, b2 + + + + + Ground state + + + Total energy: -76.34300618267000 + + Charge: + + elec nuc total + + -10.000000 10.000000 0.000000 + + + Electric dipole moment: + + elec nuc total + + x 0.000000 0.000000 0.000000 Norm: 0.833024 + y 0.000000 0.000000 0.000000 + z 5.912076 -5.079052 0.833024 Norm / debye: 2.117351 + + + Electric quadrupole moment: + + elec nuc total + + xx -7.255308 4.016539 -3.238769 + yy -5.263827 0.000000 -5.263827 1/3*trace: -4.613667 + zz -9.813357 4.474951 -5.338406 + xy 0.000000 0.000000 0.000000 + xz 0.000000 0.000000 0.000000 Anisotropy: 2.063359 + yz 0.000000 0.000000 0.000000 + + + + ============================================================================== + + I R R E P a1 + + ============================================================================== + + + Excitation is electric dipole allowed + + Excitation is magnetic dipole forbidden + + Excitation is electric quadrupole allowed + + + + + 1 triplet a1 excitation + + + Total energy: -76.01823453488805 + + Excitation energy: 0.3247716477819380 + + Excitation energy / eV: 8.837489972578018 + + Excitation energy / nm: 140.2935045937036 + + Excitation energy / cm^(-1): 71279.13745877132 + + + Oscillator strength: + + velocity representation: 0.2354848144383120 + + length representation: 0.1313093878710515 + + mixed representation: 0.1758447236536340 + + + Rotatory strength: + + velocity representation: 0.000000000000000 + + velocity rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + length representation: 0.000000000000000 + + length rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 3 a1 -8.44 4 a1 0.92 99.6 + + + S^2 expectation value: 2.00664831 + + + Change of electron number: + + -0.000000 + + + Electric transition dipole moment (velocity rep.): + + x 0.000000 Norm: 1.042889 + y 0.000000 + z -1.042889 Norm / debye: 2.650779 + + + Electric transition dipole moment (length rep.): + + x 0.000000 Norm: 0.778761 + y 0.000000 + z -0.778761 Norm / debye: 1.979429 + + + Magnetic transition dipole moment / i: + + x 0.000000 Norm: 0.000000 + y 0.000000 + z 0.000000 Norm / Bohr mag.: 0.000000 + + + Electric quadrupole transition moment: + + xx -1.162068 + yy -0.265591 1/3*trace: -0.438110 + zz 0.113330 + xy 0.000000 + xz 0.000000 Anisotropy: 1.134437 + yz 0.000000 + + + + + 2 triplet a1 excitation + + + Total energy: -75.79291100961957 + + Excitation energy: 0.5500951730504251 + + Excitation energy / eV: 14.96885768507983 + + Excitation energy / nm: 82.82812664459315 + + Excitation energy / cm^(-1): 120731.9349550946 + + + Oscillator strength: + + velocity representation: 0.1462784859243031 + + length representation: 0.1744964493047580 + + mixed representation: 0.1597656921978774 + + + Rotatory strength: + + velocity representation: 0.000000000000000 + + velocity rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + length representation: 0.000000000000000 + + length rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 1 b1 -13.01 2 b1 3.09 98.8 + + + S^2 expectation value: 2.01035042 + + + Change of electron number: + + 0.000000 + + + Electric transition dipole moment (velocity rep.): + + x 0.000000 Norm: 0.631563 + y 0.000000 + z -0.631563 Norm / debye: 1.605286 + + + Electric transition dipole moment (length rep.): + + x 0.000000 Norm: 0.689795 + y 0.000000 + z -0.689795 Norm / debye: 1.753297 + + + Magnetic transition dipole moment / i: + + x 0.000000 Norm: 0.000000 + y 0.000000 + z 0.000000 Norm / Bohr mag.: 0.000000 + + + Electric quadrupole transition moment: + + xx -2.392923 + yy -0.540236 1/3*trace: -1.084303 + zz -0.319752 + xy 0.000000 + xz 0.000000 Anisotropy: 1.972194 + yz 0.000000 + + + + + 3 triplet a1 excitation + + + Total energy: -75.45404366868868 + + Excitation energy: 0.8889625139813119 + + Excitation energy / eV: 24.18991114822464 + + Excitation energy / nm: 51.25452642084957 + + Excitation energy / cm^(-1): 195104.7194621920 + + + Oscillator strength: + + velocity representation: 0.5989946058452202E-01 + + length representation: 0.9084914009269274E-01 + + mixed representation: 0.7376865517358960E-01 + + + Rotatory strength: + + velocity representation: 0.000000000000000 + + velocity rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + length representation: 0.000000000000000 + + length rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 3 a1 -8.44 5 a1 17.22 59.2 + 2 a1 -24.72 4 a1 0.92 25.5 + 1 b1 -13.01 3 b1 14.80 12.4 + + + S^2 expectation value: 2.01061141 + + + Change of electron number: + + -0.000000 + + + Electric transition dipole moment (velocity rep.): + + x 0.000000 Norm: 0.317918 + y 0.000000 + z -0.317918 Norm / debye: 0.808074 + + + Electric transition dipole moment (length rep.): + + x 0.000000 Norm: 0.391529 + y 0.000000 + z -0.391529 Norm / debye: 0.995176 + + + Magnetic transition dipole moment / i: + + x 0.000000 Norm: 0.000000 + y 0.000000 + z 0.000000 Norm / Bohr mag.: 0.000000 + + + Electric quadrupole transition moment: + + xx -0.974100 + yy -0.189188 1/3*trace: -0.400979 + zz -0.039649 + xy 0.000000 + xz 0.000000 Anisotropy: 0.869381 + yz 0.000000 + + + + + 4 triplet a1 excitation + + + Total energy: -75.41543956234747 + + Excitation energy: 0.9275666203225237 + + Excitation energy / eV: 25.24038277966417 + + Excitation energy / nm: 49.12138024561211 + + Excitation energy / cm^(-1): 203577.3414449330 + + + Oscillator strength: + + velocity representation: 0.1571219125564624E-02 + + length representation: 0.4405119560493983E-02 + + mixed representation: 0.2630856914362120E-02 + + + Rotatory strength: + + velocity representation: 0.000000000000000 + + velocity rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + length representation: 0.000000000000000 + + length rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 2 a1 -24.72 4 a1 0.92 70.8 + 3 a1 -8.44 5 a1 17.22 24.8 + + + S^2 expectation value: 2.00138506 + + + Change of electron number: + + -0.000000 + + + Electric transition dipole moment (velocity rep.): + + x 0.000000 Norm: 0.050407 + y 0.000000 + z 0.050407 Norm / debye: 0.128123 + + + Electric transition dipole moment (length rep.): + + x 0.000000 Norm: 0.084402 + y 0.000000 + z 0.084402 Norm / debye: 0.214530 + + + Magnetic transition dipole moment / i: + + x 0.000000 Norm: 0.000000 + y 0.000000 + z 0.000000 Norm / Bohr mag.: 0.000000 + + + Electric quadrupole transition moment: + + xx -0.760907 + yy -0.665696 1/3*trace: -0.774584 + zz -0.897149 + xy 0.000000 + xz 0.000000 Anisotropy: 0.201491 + yz 0.000000 + + + + + 5 triplet a1 excitation + + + Total energy: -75.37035195620906 + + Excitation energy: 0.9726542264609372 + + Excitation energy / eV: 26.46727949265346 + + Excitation energy / nm: 46.84434758052210 + + Excitation energy / cm^(-1): 213472.9271513084 + + + Oscillator strength: + + velocity representation: 0.1846161838205189 + + length representation: 0.2839929522540723 + + mixed representation: 0.2289753154317505 + + + Rotatory strength: + + velocity representation: 0.000000000000000 + + velocity rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + length representation: 0.000000000000000 + + length rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 1 b1 -13.01 3 b1 14.80 84.1 + 3 a1 -8.44 5 a1 17.22 15.1 + + + S^2 expectation value: 2.00319734 + + + Change of electron number: + + 0.000000 + + + Electric transition dipole moment (velocity rep.): + + x 0.000000 Norm: 0.533582 + y 0.000000 + z 0.533582 Norm / debye: 1.356241 + + + Electric transition dipole moment (length rep.): + + x 0.000000 Norm: 0.661790 + y 0.000000 + z 0.661790 Norm / debye: 1.682115 + + + Magnetic transition dipole moment / i: + + x 0.000000 Norm: 0.000000 + y 0.000000 + z 0.000000 Norm / Bohr mag.: 0.000000 + + + Electric quadrupole transition moment: + + xx -0.451837 + yy -0.432177 1/3*trace: -0.522345 + zz -0.683021 + xy 0.000000 + xz 0.000000 Anisotropy: 0.241615 + yz 0.000000 + + + + + 6 triplet a1 excitation + + + Total energy: -75.33830226042343 + + Excitation energy: 1.004703922246568 + + Excitation energy / eV: 27.33939646180423 + + Excitation energy / nm: 45.35002964666255 + + Excitation energy / cm^(-1): 220507.0222979070 + + + Oscillator strength: + + velocity representation: 0.4724632824940223E-02 + + length representation: 0.7296036371497148E-02 + + mixed representation: 0.5871208813586277E-02 + + + Rotatory strength: + + velocity representation: 0.000000000000000 + + velocity rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + length representation: 0.000000000000000 + + length rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 1 b2 -6.40 2 b2 23.42 92.3 + + + S^2 expectation value: 2.00929994 + + + Change of electron number: + + -0.000000 + + + Electric transition dipole moment (velocity rep.): + + x 0.000000 Norm: 0.083987 + y 0.000000 + z -0.083987 Norm / debye: 0.213475 + + + Electric transition dipole moment (length rep.): + + x 0.000000 Norm: 0.104369 + y 0.000000 + z -0.104369 Norm / debye: 0.265281 + + + Magnetic transition dipole moment / i: + + x 0.000000 Norm: 0.000000 + y 0.000000 + z 0.000000 Norm / Bohr mag.: 0.000000 + + + Electric quadrupole transition moment: + + xx 0.512091 + yy 1.833394 1/3*trace: 1.104253 + zz 0.967275 + xy 0.000000 + xz 0.000000 Anisotropy: 1.162583 + yz 0.000000 + + + + + 7 triplet a1 excitation + + + Total energy: -75.23643041802295 + + Excitation energy: 1.106575764647053 + + Excitation energy / eV: 30.11147152393163 + + Excitation energy / nm: 41.17508634804833 + + Excitation energy / cm^(-1): 242865.3072874820 + + + Oscillator strength: + + velocity representation: 0.7926866681929272E-01 + + length representation: 0.5343328082331574E-01 + + mixed representation: 0.6508137164077843E-01 + + + Rotatory strength: + + velocity representation: 0.000000000000000 + + velocity rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + length representation: 0.000000000000000 + + length rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 3 a1 -8.44 6 a1 23.83 94.5 + + + S^2 expectation value: 2.00520807 + + + Change of electron number: + + -0.000000 + + + Electric transition dipole moment (velocity rep.): + + x 0.000000 Norm: 0.327798 + y 0.000000 + z -0.327798 Norm / debye: 0.833185 + + + Electric transition dipole moment (length rep.): + + x 0.000000 Norm: 0.269129 + y 0.000000 + z -0.269129 Norm / debye: 0.684064 + + + Magnetic transition dipole moment / i: + + x 0.000000 Norm: 0.000000 + y 0.000000 + z 0.000000 Norm / Bohr mag.: 0.000000 + + + Electric quadrupole transition moment: + + xx 0.279761 + yy 0.234514 1/3*trace: 0.797572 + zz 1.878441 + xy 0.000000 + xz 0.000000 Anisotropy: 1.621777 + yz 0.000000 + + + + + 8 triplet a1 excitation + + + Total energy: -74.95384853558053 + + Excitation energy: 1.389157647089467 + + Excitation energy / eV: 37.80091907753653 + + Excitation energy / nm: 32.79926706336272 + + Excitation energy / cm^(-1): 304884.8615790416 + + + Oscillator strength: + + velocity representation: 0.2793429214641355E-01 + + length representation: 0.4811610985141787E-01 + + mixed representation: 0.3666182578020950E-01 + + + Rotatory strength: + + velocity representation: 0.000000000000000 + + velocity rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + length representation: 0.000000000000000 + + length rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 3 a1 -8.44 7 a1 30.18 99.0 + + + S^2 expectation value: 2.00103881 + + + Change of electron number: + + -0.000000 + + + Electric transition dipole moment (velocity rep.): + + x 0.000000 Norm: 0.173676 + y 0.000000 + z -0.173676 Norm / debye: 0.441443 + + + Electric transition dipole moment (length rep.): + + x 0.000000 Norm: 0.227937 + y 0.000000 + z -0.227937 Norm / debye: 0.579363 + + + Magnetic transition dipole moment / i: + + x 0.000000 Norm: 0.000000 + y 0.000000 + z 0.000000 Norm / Bohr mag.: 0.000000 + + + Electric quadrupole transition moment: + + xx 0.539242 + yy 0.125974 1/3*trace: 0.270930 + zz 0.147573 + xy 0.000000 + xz 0.000000 Anisotropy: 0.402903 + yz 0.000000 + + + + + 9 triplet a1 excitation + + + Total energy: -74.90839859812498 + + Excitation energy: 1.434607584545016 + + Excitation energy / eV: 39.03767533154121 + + Excitation energy / nm: 31.76015040687963 + + Excitation energy / cm^(-1): 314859.9698174365 + + + Oscillator strength: + + velocity representation: 0.3118784722374361E-01 + + length representation: 0.4405808732321431E-01 + + mixed representation: 0.3706854321937622E-01 + + + Rotatory strength: + + velocity representation: 0.000000000000000 + + velocity rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + length representation: 0.000000000000000 + + length rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 1 b1 -13.01 4 b1 27.75 95.8 + + + S^2 expectation value: 2.00332547 + + + Change of electron number: + + 0.000000 + + + Electric transition dipole moment (velocity rep.): + + x 0.000000 Norm: 0.180581 + y 0.000000 + z 0.180581 Norm / debye: 0.458994 + + + Electric transition dipole moment (length rep.): + + x 0.000000 Norm: 0.214631 + y 0.000000 + z 0.214631 Norm / debye: 0.545541 + + + Magnetic transition dipole moment / i: + + x 0.000000 Norm: 0.000000 + y 0.000000 + z 0.000000 Norm / Bohr mag.: 0.000000 + + + Electric quadrupole transition moment: + + xx -0.780046 + yy -0.182657 1/3*trace: -0.406900 + zz -0.257997 + xy 0.000000 + xz 0.000000 Anisotropy: 0.563509 + yz 0.000000 + + + + + 10 triplet a1 excitation + + + Total energy: -74.84207924518309 + + Excitation energy: 1.500926937486915 + + Excitation energy / eV: 40.84231751818128 + + Excitation energy / nm: 30.35680919704808 + + Excitation energy / cm^(-1): 329415.3853126227 + + + Oscillator strength: + + velocity representation: 0.9496846248271561E-02 + + length representation: 0.9423586862392063E-02 + + mixed representation: 0.9460145640494614E-02 + + + Rotatory strength: + + velocity representation: 0.000000000000000 + + velocity rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + length representation: 0.000000000000000 + + length rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 2 a1 -24.72 5 a1 17.22 95.7 + + + S^2 expectation value: 2.00208720 + + + Change of electron number: + + -0.000000 + + + Electric transition dipole moment (velocity rep.): + + x 0.000000 Norm: 0.097422 + y 0.000000 + z 0.097422 Norm / debye: 0.247623 + + + Electric transition dipole moment (length rep.): + + x 0.000000 Norm: 0.097045 + y 0.000000 + z 0.097045 Norm / debye: 0.246666 + + + Magnetic transition dipole moment / i: + + x 0.000000 Norm: 0.000000 + y 0.000000 + z 0.000000 Norm / Bohr mag.: 0.000000 + + + Electric quadrupole transition moment: + + xx 0.713084 + yy -0.439145 1/3*trace: 0.100753 + zz 0.028320 + xy 0.000000 + xz 0.000000 Anisotropy: 1.003757 + yz 0.000000 + + + + ============================================================================== + + I R R E P a2 + + ============================================================================== + + + Excitation is electric dipole forbidden + + Excitation is magnetic dipole allowed + + Excitation is electric quadrupole allowed + + + + + 1 triplet a2 excitation + + + Total energy: -76.00822783802636 + + Excitation energy: 0.3347783446436394 + + Excitation energy / eV: 9.109786165234871 + + Excitation energy / nm: 136.1000596036183 + + Excitation energy / cm^(-1): 73475.35355702009 + + + Oscillator strength: + + velocity representation: 0.000000000000000 + + length representation: 0.000000000000000 + + mixed representation: 0.000000000000000 + + + Rotatory strength: + + velocity representation: 0.000000000000000 + + velocity rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + length representation: 0.000000000000000 + + length rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 1 b2 -6.40 2 b1 3.09 99.9 + + + S^2 expectation value: 2.00277720 + + + Change of electron number: + + 0.000000 + + + Electric transition dipole moment (velocity rep.): + + x 0.000000 Norm: 0.000000 + y 0.000000 + z 0.000000 Norm / debye: 0.000000 + + + Electric transition dipole moment (length rep.): + + x 0.000000 Norm: 0.000000 + y 0.000000 + z 0.000000 Norm / debye: 0.000000 + + + Magnetic transition dipole moment / i: + + x 0.000000 Norm: 0.001046 + y 0.000000 + z 0.001046 Norm / Bohr mag.: 0.286713 + + + Electric quadrupole transition moment: + + xx 0.000000 + yy 0.000000 1/3*trace: 0.000000 + zz 0.000000 + xy 0.282669 + xz 0.000000 Anisotropy: 0.489597 + yz 0.000000 + + + + + 2 triplet a2 excitation + + + Total energy: -75.57867260453982 + + Excitation energy: 0.7643335781301736 + + Excitation energy / eV: 20.79858380053380 + + Excitation energy / nm: 59.61186838273395 + + Excitation energy / cm^(-1): 167751.8297917295 + + + Oscillator strength: + + velocity representation: 0.000000000000000 + + length representation: 0.000000000000000 + + mixed representation: 0.000000000000000 + + + Rotatory strength: + + velocity representation: 0.000000000000000 + + velocity rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + length representation: 0.000000000000000 + + length rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 1 b2 -6.40 3 b1 14.80 99.9 + + + S^2 expectation value: 2.00080015 + + + Change of electron number: + + 0.000000 + + + Electric transition dipole moment (velocity rep.): + + x 0.000000 Norm: 0.000000 + y 0.000000 + z 0.000000 Norm / debye: 0.000000 + + + Electric transition dipole moment (length rep.): + + x 0.000000 Norm: 0.000000 + y 0.000000 + z 0.000000 Norm / debye: 0.000000 + + + Magnetic transition dipole moment / i: + + x 0.000000 Norm: 0.001276 + y 0.000000 + z 0.001276 Norm / Bohr mag.: 0.349720 + + + Electric quadrupole transition moment: + + xx 0.000000 + yy 0.000000 1/3*trace: 0.000000 + zz 0.000000 + xy -0.467253 + xz 0.000000 Anisotropy: 0.809306 + yz 0.000000 + + + + + 3 triplet a2 excitation + + + Total energy: -75.12879342459158 + + Excitation energy: 1.214212758078412 + + Excitation energy / eV: 33.04042439474003 + + Excitation energy / nm: 37.52501557643623 + + Excitation energy / cm^(-1): 266488.8966704878 + + + Oscillator strength: + + velocity representation: 0.000000000000000 + + length representation: 0.000000000000000 + + mixed representation: 0.000000000000000 + + + Rotatory strength: + + velocity representation: 0.000000000000000 + + velocity rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + length representation: 0.000000000000000 + + length rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 1 b2 -6.40 4 b1 27.75 92.9 + + + S^2 expectation value: 2.00217052 + + + Change of electron number: + + 0.000000 + + + Electric transition dipole moment (velocity rep.): + + x 0.000000 Norm: 0.000000 + y 0.000000 + z 0.000000 Norm / debye: 0.000000 + + + Electric transition dipole moment (length rep.): + + x 0.000000 Norm: 0.000000 + y 0.000000 + z 0.000000 Norm / debye: 0.000000 + + + Magnetic transition dipole moment / i: + + x 0.000000 Norm: 0.000055 + y 0.000000 + z -0.000055 Norm / Bohr mag.: 0.015203 + + + Electric quadrupole transition moment: + + xx 0.000000 + yy 0.000000 1/3*trace: 0.000000 + zz 0.000000 + xy -0.599554 + xz 0.000000 Anisotropy: 1.038458 + yz 0.000000 + + + + + 4 triplet a2 excitation + + + Total energy: -75.02221768806029 + + Excitation energy: 1.320788494609701 + + Excitation energy / eV: 35.94049898360250 + + Excitation energy / nm: 34.49708476864357 + + Excitation energy / cm^(-1): 289879.5670872732 + + + Oscillator strength: + + velocity representation: 0.000000000000000 + + length representation: 0.000000000000000 + + mixed representation: 0.000000000000000 + + + Rotatory strength: + + velocity representation: 0.000000000000000 + + velocity rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + length representation: 0.000000000000000 + + length rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 1 b1 -13.01 2 b2 23.42 92.9 + + + S^2 expectation value: 2.00056588 + + + Change of electron number: + + 0.000000 + + + Electric transition dipole moment (velocity rep.): + + x 0.000000 Norm: 0.000000 + y 0.000000 + z 0.000000 Norm / debye: 0.000000 + + + Electric transition dipole moment (length rep.): + + x 0.000000 Norm: 0.000000 + y 0.000000 + z 0.000000 Norm / debye: 0.000000 + + + Magnetic transition dipole moment / i: + + x 0.000000 Norm: 0.000574 + y 0.000000 + z -0.000574 Norm / Bohr mag.: 0.157201 + + + Electric quadrupole transition moment: + + xx 0.000000 + yy 0.000000 1/3*trace: 0.000000 + zz 0.000000 + xy -0.431211 + xz 0.000000 Anisotropy: 0.746880 + yz 0.000000 + + + + + 5 triplet a2 excitation + + + Total energy: -73.58540882603756 + + Excitation energy: 2.757597356632437 + + Excitation energy / eV: 75.03807414867001 + + Excitation energy / nm: 16.52284462429342 + + Excitation energy / cm^(-1): 605222.6614662003 + + + Oscillator strength: + + velocity representation: 0.000000000000000 + + length representation: 0.000000000000000 + + mixed representation: 0.000000000000000 + + + Rotatory strength: + + velocity representation: 0.000000000000000 + + velocity rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + length representation: 0.000000000000000 + + length rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 3 a1 -8.44 1 a2 67.90 97.7 + + + S^2 expectation value: 2.00076842 + + + Change of electron number: + + 0.000000 + + + Electric transition dipole moment (velocity rep.): + + x 0.000000 Norm: 0.000000 + y 0.000000 + z 0.000000 Norm / debye: 0.000000 + + + Electric transition dipole moment (length rep.): + + x 0.000000 Norm: 0.000000 + y 0.000000 + z 0.000000 Norm / debye: 0.000000 + + + Magnetic transition dipole moment / i: + + x 0.000000 Norm: 0.000514 + y 0.000000 + z -0.000514 Norm / Bohr mag.: 0.140882 + + + Electric quadrupole transition moment: + + xx 0.000000 + yy 0.000000 1/3*trace: 0.000000 + zz 0.000000 + xy 0.157209 + xz 0.000000 Anisotropy: 0.272294 + yz 0.000000 + + + + + 6 triplet a2 excitation + + + Total energy: -73.36482833618534 + + Excitation energy: 2.978177846484650 + + Excitation energy / eV: 81.04037724541126 + + Excitation energy / nm: 15.29907044127052 + + Excitation energy / cm^(-1): 653634.4830161399 + + + Oscillator strength: + + velocity representation: 0.000000000000000 + + length representation: 0.000000000000000 + + mixed representation: 0.000000000000000 + + + Rotatory strength: + + velocity representation: 0.000000000000000 + + velocity rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + length representation: 0.000000000000000 + + length rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 1 b1 -13.01 3 b2 68.79 96.7 + + + S^2 expectation value: 2.00028703 + + + Change of electron number: + + 0.000000 + + + Electric transition dipole moment (velocity rep.): + + x 0.000000 Norm: 0.000000 + y 0.000000 + z 0.000000 Norm / debye: 0.000000 + + + Electric transition dipole moment (length rep.): + + x 0.000000 Norm: 0.000000 + y 0.000000 + z 0.000000 Norm / debye: 0.000000 + + + Magnetic transition dipole moment / i: + + x 0.000000 Norm: 0.000644 + y 0.000000 + z -0.000644 Norm / Bohr mag.: 0.176609 + + + Electric quadrupole transition moment: + + xx 0.000000 + yy 0.000000 1/3*trace: 0.000000 + zz 0.000000 + xy -0.110574 + xz 0.000000 Anisotropy: 0.191521 + yz 0.000000 + + + + + 7 triplet a2 excitation + + + Total energy: -73.13420412838164 + + Excitation energy: 3.208802054288351 + + Excitation energy / eV: 87.31598393035017 + + Excitation energy / nm: 14.19948999319157 + + Excitation energy / cm^(-1): 704250.6458543373 + + + Oscillator strength: + + velocity representation: 0.000000000000000 + + length representation: 0.000000000000000 + + mixed representation: 0.000000000000000 + + + Rotatory strength: + + velocity representation: 0.000000000000000 + + velocity rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + length representation: 0.000000000000000 + + length rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 1 b2 -6.40 5 b1 81.78 97.4 + + + S^2 expectation value: 2.00024438 + + + Change of electron number: + + 0.000000 + + + Electric transition dipole moment (velocity rep.): + + x 0.000000 Norm: 0.000000 + y 0.000000 + z 0.000000 Norm / debye: 0.000000 + + + Electric transition dipole moment (length rep.): + + x 0.000000 Norm: 0.000000 + y 0.000000 + z 0.000000 Norm / debye: 0.000000 + + + Magnetic transition dipole moment / i: + + x 0.000000 Norm: 0.000115 + y 0.000000 + z -0.000115 Norm / Bohr mag.: 0.031523 + + + Electric quadrupole transition moment: + + xx 0.000000 + yy 0.000000 1/3*trace: 0.000000 + zz 0.000000 + xy 0.238662 + xz 0.000000 Anisotropy: 0.413375 + yz 0.000000 + + + + + 8 triplet a2 excitation + + + Total energy: -73.00661741363095 + + Excitation energy: 3.336388769039044 + + Excitation energy / eV: 90.78779657146006 + + Excitation energy / nm: 13.65648784183004 + + Excitation energy / cm^(-1): 732252.6929564719 + + + Oscillator strength: + + velocity representation: 0.000000000000000 + + length representation: 0.000000000000000 + + mixed representation: 0.000000000000000 + + + Rotatory strength: + + velocity representation: 0.000000000000000 + + velocity rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + length representation: 0.000000000000000 + + length rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 2 a1 -24.72 1 a2 67.90 99.0 + + + S^2 expectation value: 2.00070424 + + + Change of electron number: + + 0.000000 + + + Electric transition dipole moment (velocity rep.): + + x 0.000000 Norm: 0.000000 + y 0.000000 + z 0.000000 Norm / debye: 0.000000 + + + Electric transition dipole moment (length rep.): + + x 0.000000 Norm: 0.000000 + y 0.000000 + z 0.000000 Norm / debye: 0.000000 + + + Magnetic transition dipole moment / i: + + x 0.000000 Norm: 0.000688 + y 0.000000 + z -0.000688 Norm / Bohr mag.: 0.188478 + + + Electric quadrupole transition moment: + + xx 0.000000 + yy 0.000000 1/3*trace: 0.000000 + zz 0.000000 + xy -0.458118 + xz 0.000000 Anisotropy: 0.793484 + yz 0.000000 + + + + + 9 triplet a2 excitation + + + Total energy: -55.10014038527046 + + Excitation energy: 21.24286579739953 + + Excitation energy / eV: 578.0480369991816 + + Excitation energy / nm: 2.144877866035273 + + Excitation energy / cm^(-1): 4662270.125893923 + + + Oscillator strength: + + velocity representation: 0.000000000000000 + + length representation: 0.000000000000000 + + mixed representation: 0.000000000000000 + + + Rotatory strength: + + velocity representation: 0.000000000000000 + + velocity rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + length representation: 0.000000000000000 + + length rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 1 a1 -510.23 1 a2 67.90 100.0 + + + S^2 expectation value: 2.00000112 + + + Change of electron number: + + 0.000000 + + + Electric transition dipole moment (velocity rep.): + + x 0.000000 Norm: 0.000000 + y 0.000000 + z 0.000000 Norm / debye: 0.000000 + + + Electric transition dipole moment (length rep.): + + x 0.000000 Norm: 0.000000 + y 0.000000 + z 0.000000 Norm / debye: 0.000000 + + + Magnetic transition dipole moment / i: + + x 0.000000 Norm: 0.000003 + y 0.000000 + z 0.000003 Norm / Bohr mag.: 0.000698 + + + Electric quadrupole transition moment: + + xx 0.000000 + yy 0.000000 1/3*trace: 0.000000 + zz 0.000000 + xy 0.015409 + xz 0.000000 Anisotropy: 0.026689 + yz 0.000000 + + + + ============================================================================== + + I R R E P b1 + + ============================================================================== + + + Excitation is electric dipole allowed + + Excitation is magnetic dipole allowed + + Excitation is electric quadrupole allowed + + + + + 1 triplet b1 excitation + + + Total energy: -75.94231204094471 + + Excitation energy: 0.4006941417252862 + + Excitation energy / eV: 10.90344703348489 + + Excitation energy / nm: 113.7110526842641 + + Excitation energy / cm^(-1): 87942.19877881065 + + + Oscillator strength: + + velocity representation: 0.2112777933009466 + + length representation: 0.2262610442217877 + + mixed representation: 0.2186411080587253 + + + Rotatory strength: + + velocity representation: 0.000000000000000 + + velocity rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + length representation: 0.000000000000000 + + length rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 3 a1 -8.44 2 b1 3.09 97.4 + + + S^2 expectation value: 2.00688187 + + + Change of electron number: + + 0.000000 + + + Electric transition dipole moment (velocity rep.): + + x -0.889336 Norm: 0.889336 + y 0.000000 + z 0.000000 Norm / debye: 2.260485 + + + Electric transition dipole moment (length rep.): + + x -0.920331 Norm: 0.920331 + y 0.000000 + z 0.000000 Norm / debye: 2.339266 + + + Magnetic transition dipole moment / i: + + x 0.000000 Norm: 0.001742 + y 0.001742 + z 0.000000 Norm / Bohr mag.: 0.477381 + + + Electric quadrupole transition moment: + + xx 0.000000 + yy 0.000000 1/3*trace: 0.000000 + zz 0.000000 + xy 0.000000 + xz -0.372315 Anisotropy: 0.644868 + yz 0.000000 + + + + + 2 triplet b1 excitation + + + Total energy: -75.85598203128360 + + Excitation energy: 0.4870241513863987 + + Excitation energy / eV: 13.25260712773335 + + Excitation energy / nm: 93.55460613256245 + + Excitation energy / cm^(-1): 106889.4457675107 + + + Oscillator strength: + + velocity representation: 0.2875797779413072 + + length representation: 0.2777796399824467 + + mixed representation: 0.2826372360160074 + + + Rotatory strength: + + velocity representation: 0.000000000000000 + + velocity rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + length representation: 0.000000000000000 + + length rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 1 b1 -13.01 4 a1 0.92 97.3 + + + S^2 expectation value: 2.00529004 + + + Change of electron number: + + 0.000000 + + + Electric transition dipole moment (velocity rep.): + + x 0.941130 Norm: 0.941130 + y 0.000000 + z 0.000000 Norm / debye: 2.392132 + + + Electric transition dipole moment (length rep.): + + x 0.924955 Norm: 0.924955 + y 0.000000 + z 0.000000 Norm / debye: 2.351019 + + + Magnetic transition dipole moment / i: + + x 0.000000 Norm: 0.000309 + y -0.000309 + z 0.000000 Norm / Bohr mag.: 0.084795 + + + Electric quadrupole transition moment: + + xx 0.000000 + yy 0.000000 1/3*trace: 0.000000 + zz 0.000000 + xy 0.000000 + xz 0.319097 Anisotropy: 0.552693 + yz 0.000000 + + + + + 3 triplet b1 excitation + + + Total energy: -75.52604933271800 + + Excitation energy: 0.8169568499519995 + + Excitation energy / eV: 22.23053649783910 + + Excitation energy / nm: 55.77204311669225 + + Excitation energy / cm^(-1): 179301.3029410504 + + + Oscillator strength: + + velocity representation: 0.2648189714069807 + + length representation: 0.3581528903420834 + + mixed representation: 0.3079702583478276 + + + Rotatory strength: + + velocity representation: 0.000000000000000 + + velocity rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + length representation: 0.000000000000000 + + length rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 3 a1 -8.44 3 b1 14.80 98.5 + + + S^2 expectation value: 2.00441322 + + + Change of electron number: + + 0.000000 + + + Electric transition dipole moment (velocity rep.): + + x 0.697302 Norm: 0.697302 + y 0.000000 + z 0.000000 Norm / debye: 1.772377 + + + Electric transition dipole moment (length rep.): + + x 0.810924 Norm: 0.810924 + y 0.000000 + z 0.000000 Norm / debye: 2.061179 + + + Magnetic transition dipole moment / i: + + x 0.000000 Norm: 0.002865 + y -0.002865 + z 0.000000 Norm / Bohr mag.: 0.785335 + + + Electric quadrupole transition moment: + + xx 0.000000 + yy 0.000000 1/3*trace: 0.000000 + zz 0.000000 + xy 0.000000 + xz -0.556726 Anisotropy: 0.964278 + yz 0.000000 + + + + + 4 triplet b1 excitation + + + Total energy: -75.34552516922788 + + Excitation energy: 0.9974810134421170 + + Excitation energy / eV: 27.14285102882654 + + Excitation energy / nm: 45.67841597582850 + + Excitation energy / cm^(-1): 218921.7770554704 + + + Oscillator strength: + + velocity representation: 0.6036340635105417E-01 + + length representation: 0.8414035200812718E-01 + + mixed representation: 0.7126709099428233E-01 + + + Rotatory strength: + + velocity representation: 0.000000000000000 + + velocity rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + length representation: 0.000000000000000 + + length rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 2 a1 -24.72 2 b1 3.09 92.0 + + + S^2 expectation value: 2.00345617 + + + Change of electron number: + + 0.000000 + + + Electric transition dipole moment (velocity rep.): + + x -0.301287 Norm: 0.301287 + y 0.000000 + z 0.000000 Norm / debye: 0.765801 + + + Electric transition dipole moment (length rep.): + + x -0.355710 Norm: 0.355710 + y 0.000000 + z 0.000000 Norm / debye: 0.904130 + + + Magnetic transition dipole moment / i: + + x 0.000000 Norm: 0.000818 + y 0.000818 + z 0.000000 Norm / Bohr mag.: 0.224113 + + + Electric quadrupole transition moment: + + xx 0.000000 + yy 0.000000 1/3*trace: 0.000000 + zz 0.000000 + xy 0.000000 + xz -0.598330 Anisotropy: 1.036339 + yz 0.000000 + + + + + 5 triplet b1 excitation + + + Total energy: -75.28797115415371 + + Excitation energy: 1.055035028516288 + + Excitation energy / eV: 28.70897613418397 + + Excitation energy / nm: 43.18657810260236 + + Excitation energy / cm^(-1): 231553.4232591764 + + + Oscillator strength: + + velocity representation: 0.1284942502686530 + + length representation: 0.2214315864696532 + + mixed representation: 0.1686792390580907 + + + Rotatory strength: + + velocity representation: 0.000000000000000 + + velocity rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + length representation: 0.000000000000000 + + length rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 1 b1 -13.01 5 a1 17.22 90.4 + + + S^2 expectation value: 2.00426079 + + + Change of electron number: + + 0.000000 + + + Electric transition dipole moment (velocity rep.): + + x -0.427419 Norm: 0.427419 + y 0.000000 + z 0.000000 Norm / debye: 1.086399 + + + Electric transition dipole moment (length rep.): + + x -0.561089 Norm: 0.561089 + y 0.000000 + z 0.000000 Norm / debye: 1.426157 + + + Magnetic transition dipole moment / i: + + x 0.000000 Norm: 0.000368 + y -0.000368 + z 0.000000 Norm / Bohr mag.: 0.100836 + + + Electric quadrupole transition moment: + + xx 0.000000 + yy 0.000000 1/3*trace: 0.000000 + zz 0.000000 + xy 0.000000 + xz -0.215802 Anisotropy: 0.373781 + yz 0.000000 + + + + + 6 triplet b1 excitation + + + Total energy: -75.05974130599394 + + Excitation energy: 1.283264876676054 + + Excitation energy / eV: 34.91942895027831 + + Excitation energy / nm: 35.50580514446820 + + Excitation energy / cm^(-1): 281644.0848987581 + + + Oscillator strength: + + velocity representation: 0.1978792631886659 + + length representation: 0.1701379379535982 + + mixed representation: 0.1834850669746642 + + + Rotatory strength: + + velocity representation: 0.000000000000000 + + velocity rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + length representation: 0.000000000000000 + + length rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 3 a1 -8.44 4 b1 27.75 78.9 + 1 b1 -13.01 6 a1 23.83 21.0 + + + S^2 expectation value: 2.00200847 + + + Change of electron number: + + 0.000000 + + + Electric transition dipole moment (velocity rep.): + + x 0.480936 Norm: 0.480936 + y 0.000000 + z 0.000000 Norm / debye: 1.222428 + + + Electric transition dipole moment (length rep.): + + x 0.445952 Norm: 0.445952 + y 0.000000 + z 0.000000 Norm / debye: 1.133505 + + + Magnetic transition dipole moment / i: + + x 0.000000 Norm: 0.001610 + y -0.001610 + z 0.000000 Norm / Bohr mag.: 0.441305 + + + Electric quadrupole transition moment: + + xx 0.000000 + yy 0.000000 1/3*trace: 0.000000 + zz 0.000000 + xy 0.000000 + xz -0.672210 Anisotropy: 1.164301 + yz 0.000000 + + + + + 7 triplet b1 excitation + + + Total energy: -75.00049027457096 + + Excitation energy: 1.342515908099035 + + Excitation energy / eV: 36.53173223981016 + + Excitation energy / nm: 33.93878045327331 + + Excitation energy / cm^(-1): 294648.1831389109 + + + Oscillator strength: + + velocity representation: 0.1015236080691838E-02 + + length representation: 0.5612486793166832E-02 + + mixed representation: 0.2387048197005959E-02 + + + Rotatory strength: + + velocity representation: 0.000000000000000 + + velocity rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + length representation: 0.000000000000000 + + length rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 1 b1 -13.01 6 a1 23.83 78.8 + 3 a1 -8.44 4 b1 27.75 20.9 + + + S^2 expectation value: 2.00022480 + + + Change of electron number: + + 0.000000 + + + Electric transition dipole moment (velocity rep.): + + x -0.033680 Norm: 0.033680 + y 0.000000 + z 0.000000 Norm / debye: 0.085606 + + + Electric transition dipole moment (length rep.): + + x -0.079189 Norm: 0.079189 + y 0.000000 + z 0.000000 Norm / debye: 0.201279 + + + Magnetic transition dipole moment / i: + + x 0.000000 Norm: 0.000729 + y -0.000729 + z 0.000000 Norm / Bohr mag.: 0.199718 + + + Electric quadrupole transition moment: + + xx 0.000000 + yy 0.000000 1/3*trace: 0.000000 + zz 0.000000 + xy 0.000000 + xz 0.222030 Anisotropy: 0.384568 + yz 0.000000 + + + + + 8 triplet b1 excitation + + + Total energy: -74.92062784645103 + + Excitation energy: 1.422378336218968 + + Excitation energy / eV: 38.70490041047981 + + Excitation energy / nm: 32.03321612807926 + + Excitation energy / cm^(-1): 312175.9600573385 + + + Oscillator strength: + + velocity representation: 0.5774687727203557E-03 + + length representation: 0.1383020408469612E-02 + + mixed representation: 0.8936728136886297E-03 + + + Rotatory strength: + + velocity representation: 0.000000000000000 + + velocity rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + length representation: 0.000000000000000 + + length rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 2 a1 -24.72 3 b1 14.80 98.8 + + + S^2 expectation value: 2.00125064 + + + Change of electron number: + + 0.000000 + + + Electric transition dipole moment (velocity rep.): + + x -0.024678 Norm: 0.024678 + y 0.000000 + z 0.000000 Norm / debye: 0.062725 + + + Electric transition dipole moment (length rep.): + + x -0.038190 Norm: 0.038190 + y 0.000000 + z 0.000000 Norm / debye: 0.097071 + + + Magnetic transition dipole moment / i: + + x 0.000000 Norm: 0.000984 + y 0.000984 + z 0.000000 Norm / Bohr mag.: 0.269581 + + + Electric quadrupole transition moment: + + xx 0.000000 + yy 0.000000 1/3*trace: 0.000000 + zz 0.000000 + xy 0.000000 + xz -0.680881 Anisotropy: 1.179320 + yz 0.000000 + + + + + 9 triplet b1 excitation + + + Total energy: -74.79144022404836 + + Excitation energy: 1.551565958621634 + + Excitation energy / eV: 42.22027598393910 + + Excitation energy / nm: 29.36604300114780 + + Excitation energy / cm^(-1): 340529.3657751746 + + + Oscillator strength: + + velocity representation: 0.8459011752145730E-02 + + length representation: 0.3114612763589440E-01 + + mixed representation: 0.1623161913383448E-01 + + + Rotatory strength: + + velocity representation: 0.000000000000000 + + velocity rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + length representation: 0.000000000000000 + + length rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 1 b1 -13.01 7 a1 30.18 99.2 + + + S^2 expectation value: 2.00101712 + + + Change of electron number: + + 0.000000 + + + Electric transition dipole moment (velocity rep.): + + x -0.090432 Norm: 0.090432 + y 0.000000 + z 0.000000 Norm / debye: 0.229856 + + + Electric transition dipole moment (length rep.): + + x -0.173525 Norm: 0.173525 + y 0.000000 + z 0.000000 Norm / debye: 0.441060 + + + Magnetic transition dipole moment / i: + + x 0.000000 Norm: 0.000428 + y -0.000428 + z 0.000000 Norm / Bohr mag.: 0.117377 + + + Electric quadrupole transition moment: + + xx 0.000000 + yy 0.000000 1/3*trace: 0.000000 + zz 0.000000 + xy 0.000000 + xz -0.298321 Anisotropy: 0.516707 + yz 0.000000 + + + + + 10 triplet b1 excitation + + + Total energy: -74.44746414239671 + + Excitation energy: 1.895542040273285 + + Excitation energy / eV: 51.58034541476646 + + Excitation energy / nm: 24.03711006769916 + + Excitation energy / cm^(-1): 416023.3892653038 + + + Oscillator strength: + + velocity representation: 0.9226550791944600E-01 + + length representation: 0.9313921044836769E-01 + + mixed representation: 0.9270132986767134E-01 + + + Rotatory strength: + + velocity representation: 0.000000000000000 + + velocity rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + length representation: 0.000000000000000 + + length rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 2 a1 -24.72 4 b1 27.75 99.2 + + + S^2 expectation value: 2.00096822 + + + Change of electron number: + + 0.000000 + + + Electric transition dipole moment (velocity rep.): + + x -0.270208 Norm: 0.270208 + y 0.000000 + z 0.000000 Norm / debye: 0.686806 + + + Electric transition dipole moment (length rep.): + + x -0.271485 Norm: 0.271485 + y 0.000000 + z 0.000000 Norm / debye: 0.690050 + + + Magnetic transition dipole moment / i: + + x 0.000000 Norm: 0.000977 + y 0.000977 + z 0.000000 Norm / Bohr mag.: 0.267685 + + + Electric quadrupole transition moment: + + xx 0.000000 + yy 0.000000 1/3*trace: 0.000000 + zz 0.000000 + xy 0.000000 + xz 0.378952 Anisotropy: 0.656364 + yz 0.000000 + + + + ============================================================================== + + I R R E P b2 + + ============================================================================== + + + Excitation is electric dipole allowed + + Excitation is magnetic dipole allowed + + Excitation is electric quadrupole allowed + + + + + 1 triplet b2 excitation + + + Total energy: -76.08891309318071 + + Excitation energy: 0.2540930894892827 + + Excitation energy / eV: 6.914227722152135 + + Excitation energy / nm: 179.3175593699954 + + Excitation energy / cm^(-1): 55766.98697908238 + + + Oscillator strength: + + velocity representation: 0.9695632035150084E-01 + + length representation: 0.1444211774765394E-01 + + mixed representation: 0.3741997588047901E-01 + + + Rotatory strength: + + velocity representation: 0.000000000000000 + + velocity rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + length representation: 0.000000000000000 + + length rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 1 b2 -6.40 4 a1 0.92 100.0 + + + S^2 expectation value: 2.00456917 + + + Change of electron number: + + 0.000000 + + + Electric transition dipole moment (velocity rep.): + + x 0.000000 Norm: 0.756549 + y 0.756549 + z 0.000000 Norm / debye: 1.922971 + + + Electric transition dipole moment (length rep.): + + x 0.000000 Norm: 0.291988 + y 0.291988 + z 0.000000 Norm / debye: 0.742164 + + + Magnetic transition dipole moment / i: + + x -0.000282 Norm: 0.000282 + y 0.000000 + z 0.000000 Norm / Bohr mag.: 0.077394 + + + Electric quadrupole transition moment: + + xx 0.000000 + yy 0.000000 1/3*trace: 0.000000 + zz 0.000000 + xy 0.000000 + xz 0.000000 Anisotropy: 0.170900 + yz -0.098669 + + + + + 2 triplet b2 excitation + + + Total energy: -75.49982291284590 + + Excitation energy: 0.8431832698240953 + + Excitation energy / eV: 22.94419399909946 + + Excitation energy / nm: 54.03730634919430 + + Excitation energy / cm^(-1): 185057.3367570618 + + + Oscillator strength: + + velocity representation: 0.1054128736572616 + + length representation: 0.1866850354372666 + + mixed representation: 0.1402818807054211 + + + Rotatory strength: + + velocity representation: 0.000000000000000 + + velocity rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + length representation: 0.000000000000000 + + length rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 1 b2 -6.40 5 a1 17.22 99.8 + + + S^2 expectation value: 2.00170449 + + + Change of electron number: + + 0.000000 + + + Electric transition dipole moment (velocity rep.): + + x 0.000000 Norm: 0.433043 + y 0.433043 + z 0.000000 Norm / debye: 1.100695 + + + Electric transition dipole moment (length rep.): + + x 0.000000 Norm: 0.576288 + y 0.576288 + z 0.000000 Norm / debye: 1.464788 + + + Magnetic transition dipole moment / i: + + x 0.001725 Norm: 0.001725 + y 0.000000 + z 0.000000 Norm / Bohr mag.: 0.472753 + + + Electric quadrupole transition moment: + + xx 0.000000 + yy 0.000000 1/3*trace: 0.000000 + zz 0.000000 + xy 0.000000 + xz 0.000000 Anisotropy: 0.451549 + yz -0.260702 + + + + + 3 triplet b2 excitation + + + Total energy: -75.28070931032175 + + Excitation energy: 1.062296872348239 + + Excitation energy / eV: 28.90658104361985 + + Excitation energy / nm: 42.89135536969138 + + Excitation energy / cm^(-1): 233147.2137523948 + + + Oscillator strength: + + velocity representation: 0.1341054218274605E-01 + + length representation: 0.1184729127031465E-01 + + mixed representation: 0.1260470544407261E-01 + + + Rotatory strength: + + velocity representation: 0.000000000000000 + + velocity rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + length representation: 0.000000000000000 + + length rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 1 b2 -6.40 6 a1 23.83 84.2 + 3 a1 -8.44 2 b2 23.42 15.7 + + + S^2 expectation value: 2.00347830 + + + Change of electron number: + + 0.000000 + + + Electric transition dipole moment (velocity rep.): + + x 0.000000 Norm: 0.137609 + y -0.137609 + z 0.000000 Norm / debye: 0.349769 + + + Electric transition dipole moment (length rep.): + + x 0.000000 Norm: 0.129340 + y -0.129340 + z 0.000000 Norm / debye: 0.328751 + + + Magnetic transition dipole moment / i: + + x -0.000399 Norm: 0.000399 + y 0.000000 + z 0.000000 Norm / Bohr mag.: 0.109318 + + + Electric quadrupole transition moment: + + xx 0.000000 + yy 0.000000 1/3*trace: 0.000000 + zz 0.000000 + xy 0.000000 + xz 0.000000 Anisotropy: 1.470922 + yz 0.849237 + + + + + 4 triplet b2 excitation + + + Total energy: -75.19063257920865 + + Excitation energy: 1.152373603461349 + + Excitation energy / eV: 31.35769465963726 + + Excitation energy / nm: 39.53869866781290 + + Excitation energy / cm^(-1): 252916.7710481079 + + + Oscillator strength: + + velocity representation: 0.1345247583028893E-01 + + length representation: 0.1706350575088063E-04 + + mixed representation: 0.4791100068812150E-03 + + + Rotatory strength: + + velocity representation: 0.000000000000000 + + velocity rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + length representation: 0.000000000000000 + + length rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 3 a1 -8.44 2 b2 23.42 84.2 + 1 b2 -6.40 6 a1 23.83 15.7 + + + S^2 expectation value: 2.00049476 + + + Change of electron number: + + 0.000000 + + + Electric transition dipole moment (velocity rep.): + + x 0.000000 Norm: 0.132327 + y 0.132327 + z 0.000000 Norm / debye: 0.336345 + + + Electric transition dipole moment (length rep.): + + x 0.000000 Norm: 0.004713 + y -0.004713 + z 0.000000 Norm / debye: 0.011979 + + + Magnetic transition dipole moment / i: + + x 0.000723 Norm: 0.000723 + y 0.000000 + z 0.000000 Norm / Bohr mag.: 0.198106 + + + Electric quadrupole transition moment: + + xx 0.000000 + yy 0.000000 1/3*trace: 0.000000 + zz 0.000000 + xy 0.000000 + xz 0.000000 Anisotropy: 0.508370 + yz -0.293507 + + + + + 5 triplet b2 excitation + + + Total energy: -75.04786665948561 + + Excitation energy: 1.295139523184382 + + Excitation energy / eV: 35.24255466079512 + + Excitation energy / nm: 35.18026578941286 + + Excitation energy / cm^(-1): 284250.2685558664 + + + Oscillator strength: + + velocity representation: 0.3186600307892787 + + length representation: 0.5275290117476400 + + mixed representation: 0.4100029403867011 + + + Rotatory strength: + + velocity representation: 0.000000000000000 + + velocity rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + length representation: 0.000000000000000 + + length rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 1 b2 -6.40 7 a1 30.18 99.5 + + + S^2 expectation value: 2.00216015 + + + Change of electron number: + + 0.000000 + + + Electric transition dipole moment (velocity rep.): + + x 0.000000 Norm: 0.607507 + y -0.607507 + z 0.000000 Norm / debye: 1.544140 + + + Electric transition dipole moment (length rep.): + + x 0.000000 Norm: 0.781647 + y -0.781647 + z 0.000000 Norm / debye: 1.986763 + + + Magnetic transition dipole moment / i: + + x -0.002174 Norm: 0.002174 + y 0.000000 + z 0.000000 Norm / Bohr mag.: 0.595913 + + + Electric quadrupole transition moment: + + xx 0.000000 + yy 0.000000 1/3*trace: 0.000000 + zz 0.000000 + xy 0.000000 + xz 0.000000 Anisotropy: 0.520233 + yz 0.300356 + + + + + 6 triplet b2 excitation + + + Total energy: -74.60446365779657 + + Excitation energy: 1.738542524873421 + + Excitation energy / eV: 47.30816940272273 + + Excitation energy / nm: 26.20778727475611 + + Excitation energy / cm^(-1): 381565.9786028396 + + + Oscillator strength: + + velocity representation: 0.1046310835710460 + + length representation: 0.7023608050783973E-01 + + mixed representation: 0.8572559249908102E-01 + + + Rotatory strength: + + velocity representation: 0.000000000000000 + + velocity rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + length representation: 0.000000000000000 + + length rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 2 a1 -24.72 2 b2 23.42 99.4 + + + S^2 expectation value: 2.00114320 + + + Change of electron number: + + 0.000000 + + + Electric transition dipole moment (velocity rep.): + + x 0.000000 Norm: 0.300458 + y 0.300458 + z 0.000000 Norm / debye: 0.763693 + + + Electric transition dipole moment (length rep.): + + x 0.000000 Norm: 0.246169 + y 0.246169 + z 0.000000 Norm / debye: 0.625704 + + + Magnetic transition dipole moment / i: + + x 0.001221 Norm: 0.001221 + y 0.000000 + z 0.000000 Norm / Bohr mag.: 0.334727 + + + Electric quadrupole transition moment: + + xx 0.000000 + yy 0.000000 1/3*trace: 0.000000 + zz 0.000000 + xy 0.000000 + xz 0.000000 Anisotropy: 0.063929 + yz -0.036909 + + + + + 7 triplet b2 excitation + + + Total energy: -73.68591641921864 + + Excitation energy: 2.657089763451357 + + Excitation energy / eV: 72.30312221252646 + + Excitation energy / nm: 17.14784095243236 + + Excitation energy / cm^(-1): 583163.7945702369 + + + Oscillator strength: + + velocity representation: 0.2859321587655434E-01 + + length representation: 0.6977753602944474E-01 + + mixed representation: 0.4466726039308838E-01 + + + Rotatory strength: + + velocity representation: 0.000000000000000 + + velocity rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + length representation: 0.000000000000000 + + length rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 1 b2 -6.40 8 a1 67.45 91.8 + + + S^2 expectation value: 2.00091171 + + + Change of electron number: + + 0.000000 + + + Electric transition dipole moment (velocity rep.): + + x 0.000000 Norm: 0.127050 + y 0.127050 + z 0.000000 Norm / debye: 0.322931 + + + Electric transition dipole moment (length rep.): + + x 0.000000 Norm: 0.198472 + y 0.198472 + z 0.000000 Norm / debye: 0.504471 + + + Magnetic transition dipole moment / i: + + x 0.000860 Norm: 0.000860 + y 0.000000 + z 0.000000 Norm / Bohr mag.: 0.235747 + + + Electric quadrupole transition moment: + + xx 0.000000 + yy 0.000000 1/3*trace: 0.000000 + zz 0.000000 + xy 0.000000 + xz 0.000000 Anisotropy: 0.129434 + yz -0.074729 + + + + + 8 triplet b2 excitation + + + Total energy: -73.58415240678939 + + Excitation energy: 2.758853775880616 + + Excitation energy / eV: 75.07226307058782 + + Excitation energy / nm: 16.51531989782835 + + Excitation energy / cm^(-1): 605498.4136166987 + + + Oscillator strength: + + velocity representation: 0.4463135276964550 + + length representation: 1.098716013399029 + + mixed representation: 0.7002655352626644 + + + Rotatory strength: + + velocity representation: 0.000000000000000 + + velocity rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + length representation: 0.000000000000000 + + length rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 3 a1 -8.44 3 b2 68.79 91.4 + + + S^2 expectation value: 2.00107413 + + + Change of electron number: + + 0.000000 + + + Electric transition dipole moment (velocity rep.): + + x 0.000000 Norm: 0.492608 + y 0.492608 + z 0.000000 Norm / debye: 1.252094 + + + Electric transition dipole moment (length rep.): + + x 0.000000 Norm: 0.772901 + y 0.772901 + z 0.000000 Norm / debye: 1.964534 + + + Magnetic transition dipole moment / i: + + x 0.003078 Norm: 0.003078 + y 0.000000 + z 0.000000 Norm / Bohr mag.: 0.843583 + + + Electric quadrupole transition moment: + + xx 0.000000 + yy 0.000000 1/3*trace: 0.000000 + zz 0.000000 + xy 0.000000 + xz 0.000000 Anisotropy: 1.272895 + yz -0.734906 + + + + + 9 triplet b2 excitation + + + Total energy: -73.43561216778127 + + Excitation energy: 2.907394014888717 + + Excitation energy / eV: 79.11425036142377 + + Excitation energy / nm: 15.67154380406330 + + Excitation energy / cm^(-1): 638099.2277170916 + + + Oscillator strength: + + velocity representation: 0.1200979302622326 + + length representation: 0.3280400058904574 + + mixed representation: 0.1984865883395009 + + + Rotatory strength: + + velocity representation: 0.000000000000000 + + velocity rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + length representation: 0.000000000000000 + + length rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 1 b1 -13.01 1 a2 67.90 95.3 + + + S^2 expectation value: 2.00068207 + + + Change of electron number: + + 0.000000 + + + Electric transition dipole moment (velocity rep.): + + x 0.000000 Norm: 0.248921 + y 0.248921 + z 0.000000 Norm / debye: 0.632699 + + + Electric transition dipole moment (length rep.): + + x 0.000000 Norm: 0.411393 + y 0.411393 + z 0.000000 Norm / debye: 1.045665 + + + Magnetic transition dipole moment / i: + + x 0.001170 Norm: 0.001170 + y 0.000000 + z 0.000000 Norm / Bohr mag.: 0.320652 + + + Electric quadrupole transition moment: + + xx 0.000000 + yy 0.000000 1/3*trace: 0.000000 + zz 0.000000 + xy 0.000000 + xz 0.000000 Anisotropy: 0.340846 + yz -0.196787 + + + + + 10 triplet b2 excitation + + + Total energy: -73.33804858243694 + + Excitation energy: 3.004957600233055 + + Excitation energy / eV: 81.76909173399416 + + Excitation energy / nm: 15.16272730652381 + + Excitation energy / cm^(-1): 659511.9595803081 + + + Oscillator strength: + + velocity representation: 0.2563394030976651 + + length representation: 0.4465036699568586 + + mixed representation: 0.3383141797762221 + + + Rotatory strength: + + velocity representation: 0.000000000000000 + + velocity rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + length representation: 0.000000000000000 + + length rep. / 10^(-40)erg*cm^3: 0.000000000000000 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 1 b2 -6.40 9 a1 77.83 97.4 + + + S^2 expectation value: 2.00125766 + + + Change of electron number: + + 0.000000 + + + Electric transition dipole moment (velocity rep.): + + x 0.000000 Norm: 0.357713 + y 0.357713 + z 0.000000 Norm / debye: 0.909221 + + + Electric transition dipole moment (length rep.): + + x 0.000000 Norm: 0.472105 + y 0.472105 + z 0.000000 Norm / debye: 1.199981 + + + Magnetic transition dipole moment / i: + + x 0.002567 Norm: 0.002567 + y 0.000000 + z 0.000000 Norm / Bohr mag.: 0.703551 + + + Electric quadrupole transition moment: + + xx 0.000000 + yy 0.000000 1/3*trace: 0.000000 + zz 0.000000 + xy 0.000000 + xz 0.000000 Anisotropy: 0.789818 + yz -0.456002 + + SUMMARY OF EXCITATION ENERGIES AND DIPOLE OSCILLATOR STRENGTHS (velocity/length): + + ----------------------------------------------------------------------------------------------- + | Exc. | energy (Eh) | energy (eV) | energy (cm-1) | energy (nm) | Osc.(vel) | Osc.(len) | + ----------------------------------------------------------------------------------------------- + | 1 a1 | 0.324772 | 8.83749 | 71279.137 | 140.294 | 0.23548 | 0.13131 | + | 2 a1 | 0.550095 | 14.96885 | 120731.935 | 82.828 | 0.14628 | 0.17450 | + | 3 a1 | 0.888963 | 24.18990 | 195104.719 | 51.255 | 0.05990 | 0.09085 | + | 4 a1 | 0.927567 | 25.24037 | 203577.341 | 49.121 | 0.00157 | 0.00441 | + | 5 a1 | 0.972654 | 26.46727 | 213472.927 | 46.844 | 0.18462 | 0.28399 | + | 6 a1 | 1.004704 | 27.33939 | 220507.022 | 45.350 | 0.00472 | 0.00730 | + | 7 a1 | 1.106576 | 30.11146 | 242865.307 | 41.175 | 0.07927 | 0.05343 | + | 8 a1 | 1.389158 | 37.80090 | 304884.862 | 32.799 | 0.02793 | 0.04812 | + | 9 a1 | 1.434608 | 39.03766 | 314859.970 | 31.760 | 0.03119 | 0.04406 | + | 10 a1 | 1.500927 | 40.84230 | 329415.385 | 30.357 | 0.00950 | 0.00942 | + ----------------------------------------------------------------------------------------------- + Transitions are magnetic dipole forbidden in irrep a1 + + + ----------------------------------------------------------------------------------------------- + | Exc. | energy (Eh) | energy (eV) | energy (cm-1) | energy (nm) | Osc.(vel) | Osc.(len) | + ----------------------------------------------------------------------------------------------- + | 1 a2 | 0.334778 | 9.10978 | 73475.354 | 136.100 | 0.00000 | 0.00000 | + | 2 a2 | 0.764334 | 20.79858 | 167751.830 | 59.612 | 0.00000 | 0.00000 | + | 3 a2 | 1.214213 | 33.04041 | 266488.897 | 37.525 | 0.00000 | 0.00000 | + | 4 a2 | 1.320788 | 35.94049 | 289879.567 | 34.497 | 0.00000 | 0.00000 | + | 5 a2 | 2.757597 | 75.03805 | 605222.661 | 16.523 | 0.00000 | 0.00000 | + | 6 a2 | 2.978178 | 81.04035 | 653634.483 | 15.299 | 0.00000 | 0.00000 | + | 7 a2 | 3.208802 | 87.31595 | 704250.646 | 14.199 | 0.00000 | 0.00000 | + | 8 a2 | 3.336389 | 90.78776 | 732252.693 | 13.656 | 0.00000 | 0.00000 | + | 9 a2 | 21.242866 | 578.04782 | 4662270.125 | 2.145 | 0.00000 | 0.00000 | + ----------------------------------------------------------------------------------------------- + Transitions are electric dipole forbidden in irrep a2 + + + ----------------------------------------------------------------------------------------------- + | Exc. | energy (Eh) | energy (eV) | energy (cm-1) | energy (nm) | Osc.(vel) | Osc.(len) | + ----------------------------------------------------------------------------------------------- + | 1 b1 | 0.400694 | 10.90344 | 87942.199 | 113.711 | 0.21128 | 0.22626 | + | 2 b1 | 0.487024 | 13.25260 | 106889.446 | 93.555 | 0.28758 | 0.27778 | + | 3 b1 | 0.816957 | 22.23053 | 179301.303 | 55.772 | 0.26482 | 0.35815 | + | 4 b1 | 0.997481 | 27.14284 | 218921.777 | 45.678 | 0.06036 | 0.08414 | + | 5 b1 | 1.055035 | 28.70897 | 231553.423 | 43.187 | 0.12849 | 0.22143 | + | 6 b1 | 1.283265 | 34.91942 | 281644.085 | 35.506 | 0.19788 | 0.17014 | + | 7 b1 | 1.342516 | 36.53172 | 294648.183 | 33.939 | 0.00102 | 0.00561 | + | 8 b1 | 1.422378 | 38.70489 | 312175.960 | 32.033 | 0.00058 | 0.00138 | + | 9 b1 | 1.551566 | 42.22026 | 340529.366 | 29.366 | 0.00846 | 0.03115 | + | 10 b1 | 1.895542 | 51.58033 | 416023.389 | 24.037 | 0.09227 | 0.09314 | + ----------------------------------------------------------------------------------------------- + + + ----------------------------------------------------------------------------------------------- + | Exc. | energy (Eh) | energy (eV) | energy (cm-1) | energy (nm) | Osc.(vel) | Osc.(len) | + ----------------------------------------------------------------------------------------------- + | 1 b2 | 0.254093 | 6.91423 | 55766.987 | 179.318 | 0.09696 | 0.01444 | + | 2 b2 | 0.843183 | 22.94419 | 185057.337 | 54.037 | 0.10541 | 0.18669 | + | 3 b2 | 1.062297 | 28.90657 | 233147.214 | 42.891 | 0.01341 | 0.01185 | + | 4 b2 | 1.152374 | 31.35768 | 252916.771 | 39.539 | 0.01345 | 0.00002 | + | 5 b2 | 1.295140 | 35.24254 | 284250.269 | 35.180 | 0.31866 | 0.52753 | + | 6 b2 | 1.738543 | 47.30815 | 381565.979 | 26.208 | 0.10463 | 0.07024 | + | 7 b2 | 2.657090 | 72.30310 | 583163.794 | 17.148 | 0.02859 | 0.06978 | + | 8 b2 | 2.758854 | 75.07224 | 605498.414 | 16.515 | 0.44631 | 1.09872 | + | 9 b2 | 2.907394 | 79.11422 | 638099.228 | 15.672 | 0.12010 | 0.32804 | + | 10 b2 | 3.004958 | 81.76906 | 659511.959 | 15.163 | 0.25634 | 0.44650 | + ----------------------------------------------------------------------------------------------- + + + + + ------------------------------------------------------------------------ + total cpu-time : 0.21 seconds + total wall-time : 2.38 seconds + ------------------------------------------------------------------------ + + **** escf : all done **** + + + 2023-01-25 00:19:10.768 + diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/escf/h2o_ridft_rpat/ref_escf_output.json b/turbomoleio/testfiles/outputs/TM_v7.6/escf/h2o_ridft_rpat/ref_escf_output.json new file mode 100644 index 0000000..17a0de5 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/escf/h2o_ridft_rpat/ref_escf_output.json @@ -0,0 +1,2586 @@ +{ + "@module": "turbomoleio.output.files", + "@class": "EscfOnlyOutput", + "@version": "1.3.0", + "escf": { + "@module": "turbomoleio.output.data", + "@class": "EscfData", + "@version": "1.3.0", + "calc_type": "RPA TRIPLET-EXCITATION", + "iterations": { + "@module": "turbomoleio.output.data", + "@class": "EscfIterationData", + "@version": "1.3.0", + "steps": [ + [ + [ + "a1", + 0, + 0.1246374408123256 + ], + [ + "a2", + 9, + 7.348166357137622e-15 + ], + [ + "b1", + 0, + 0.09181206046462143 + ], + [ + "b2", + 10, + 5.215985075398134e-14 + ] + ], + [ + [ + "a1", + 10, + 7.745012815871526e-14 + ], + [ + "a2", + 9, + 7.348166357137622e-15 + ], + [ + "b1", + 10, + 4.175781234104372e-14 + ], + [ + "b2", + 10, + 5.215985075398134e-14 + ] + ] + ], + "converged": true + }, + "residuum_convergence_criterium": 1e-05, + "n_occupied_orbitals": 5, + "orbital_characterization": "scfconv=7", + "max_davidson_iter": 35, + "machine_precision": 2.22e-16, + "max_core_mem": 500.0, + "max_cao_basis_vectors": 155298, + "max_treated_vectors": 58, + "irrep_data": { + "a1": { + "tensor_space_dim": 24, + "n_roots": 10 + }, + "a2": { + "tensor_space_dim": 9, + "n_roots": 9 + }, + "b1": { + "tensor_space_dim": 19, + "n_roots": 10 + }, + "b2": { + "tensor_space_dim": 13, + "n_roots": 10 + } + }, + "gs_tot_en": -76.34300618267, + "excitations": { + "a1": [ + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -76.01823453488805, + "osc_stre": 0.1313093878710515, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 3, + "irrep": "a1", + "energy": -8.44, + "spin": null + }, + "virt_orb": { + "index": 4, + "irrep": "a1", + "energy": 0.92, + "spin": null + }, + "coeff": 99.6 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + -0.778761 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": -1.31433, + "anisotropy": 1.134437, + "moment": [ + [ + -1.162068, + 0.0, + 0.0 + ], + [ + 0.0, + -0.265591, + 0.0 + ], + [ + 0.0, + 0.0, + 0.11333 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -75.79291100961957, + "osc_stre": 0.174496449304758, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b1", + "energy": -13.01, + "spin": null + }, + "virt_orb": { + "index": 2, + "irrep": "b1", + "energy": 3.09, + "spin": null + }, + "coeff": 98.8 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + -0.689795 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": -3.252909, + "anisotropy": 1.972194, + "moment": [ + [ + -2.392923, + 0.0, + 0.0 + ], + [ + 0.0, + -0.540236, + 0.0 + ], + [ + 0.0, + 0.0, + -0.319752 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -75.45404366868868, + "osc_stre": 0.09084914009269274, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 3, + "irrep": "a1", + "energy": -8.44, + "spin": null + }, + "virt_orb": { + "index": 5, + "irrep": "a1", + "energy": 17.22, + "spin": null + }, + "coeff": 59.2 + }, + { + "occ_orb": { + "index": 2, + "irrep": "a1", + "energy": -24.72, + "spin": null + }, + "virt_orb": { + "index": 4, + "irrep": "a1", + "energy": 0.92, + "spin": null + }, + "coeff": 25.5 + }, + { + "occ_orb": { + "index": 1, + "irrep": "b1", + "energy": -13.01, + "spin": null + }, + "virt_orb": { + "index": 3, + "irrep": "b1", + "energy": 14.8, + "spin": null + }, + "coeff": 12.4 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + -0.391529 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": -1.202937, + "anisotropy": 0.869381, + "moment": [ + [ + -0.9741, + 0.0, + 0.0 + ], + [ + 0.0, + -0.189188, + 0.0 + ], + [ + 0.0, + 0.0, + -0.039649 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -75.41543956234747, + "osc_stre": 0.004405119560493983, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 2, + "irrep": "a1", + "energy": -24.72, + "spin": null + }, + "virt_orb": { + "index": 4, + "irrep": "a1", + "energy": 0.92, + "spin": null + }, + "coeff": 70.8 + }, + { + "occ_orb": { + "index": 3, + "irrep": "a1", + "energy": -8.44, + "spin": null + }, + "virt_orb": { + "index": 5, + "irrep": "a1", + "energy": 17.22, + "spin": null + }, + "coeff": 24.8 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + 0.084402 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": -2.3237520000000003, + "anisotropy": 0.201491, + "moment": [ + [ + -0.760907, + 0.0, + 0.0 + ], + [ + 0.0, + -0.665696, + 0.0 + ], + [ + 0.0, + 0.0, + -0.897149 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -75.37035195620906, + "osc_stre": 0.2839929522540723, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b1", + "energy": -13.01, + "spin": null + }, + "virt_orb": { + "index": 3, + "irrep": "b1", + "energy": 14.8, + "spin": null + }, + "coeff": 84.1 + }, + { + "occ_orb": { + "index": 3, + "irrep": "a1", + "energy": -8.44, + "spin": null + }, + "virt_orb": { + "index": 5, + "irrep": "a1", + "energy": 17.22, + "spin": null + }, + "coeff": 15.1 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + 0.66179 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": -1.5670349999999997, + "anisotropy": 0.241615, + "moment": [ + [ + -0.451837, + 0.0, + 0.0 + ], + [ + 0.0, + -0.432177, + 0.0 + ], + [ + 0.0, + 0.0, + -0.683021 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -75.33830226042343, + "osc_stre": 0.007296036371497148, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b2", + "energy": -6.4, + "spin": null + }, + "virt_orb": { + "index": 2, + "irrep": "b2", + "energy": 23.42, + "spin": null + }, + "coeff": 92.3 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + -0.104369 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 3.312759, + "anisotropy": 1.162583, + "moment": [ + [ + 0.512091, + 0.0, + 0.0 + ], + [ + 0.0, + 1.833394, + 0.0 + ], + [ + 0.0, + 0.0, + 0.967275 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -75.23643041802295, + "osc_stre": 0.05343328082331574, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 3, + "irrep": "a1", + "energy": -8.44, + "spin": null + }, + "virt_orb": { + "index": 6, + "irrep": "a1", + "energy": 23.83, + "spin": null + }, + "coeff": 94.5 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + -0.269129 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 2.392716, + "anisotropy": 1.621777, + "moment": [ + [ + 0.279761, + 0.0, + 0.0 + ], + [ + 0.0, + 0.234514, + 0.0 + ], + [ + 0.0, + 0.0, + 1.878441 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -74.95384853558053, + "osc_stre": 0.04811610985141787, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 3, + "irrep": "a1", + "energy": -8.44, + "spin": null + }, + "virt_orb": { + "index": 7, + "irrep": "a1", + "energy": 30.18, + "spin": null + }, + "coeff": 99.0 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + -0.227937 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.81279, + "anisotropy": 0.402903, + "moment": [ + [ + 0.539242, + 0.0, + 0.0 + ], + [ + 0.0, + 0.125974, + 0.0 + ], + [ + 0.0, + 0.0, + 0.147573 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -74.90839859812498, + "osc_stre": 0.04405808732321431, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b1", + "energy": -13.01, + "spin": null + }, + "virt_orb": { + "index": 4, + "irrep": "b1", + "energy": 27.75, + "spin": null + }, + "coeff": 95.8 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + 0.214631 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": -1.2207, + "anisotropy": 0.563509, + "moment": [ + [ + -0.780046, + 0.0, + 0.0 + ], + [ + 0.0, + -0.182657, + 0.0 + ], + [ + 0.0, + 0.0, + -0.257997 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -74.84207924518309, + "osc_stre": 0.009423586862392063, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 2, + "irrep": "a1", + "energy": -24.72, + "spin": null + }, + "virt_orb": { + "index": 5, + "irrep": "a1", + "energy": 17.22, + "spin": null + }, + "coeff": 95.7 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + 0.097045 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.302259, + "anisotropy": 1.003757, + "moment": [ + [ + 0.713084, + 0.0, + 0.0 + ], + [ + 0.0, + -0.439145, + 0.0 + ], + [ + 0.0, + 0.0, + 0.02832 + ] + ] + } + } + ] + } + ], + "a2": [ + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -76.00822783802636, + "osc_stre": 0.0, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b2", + "energy": -6.4, + "spin": null + }, + "virt_orb": { + "index": 2, + "irrep": "b1", + "energy": 3.09, + "spin": null + }, + "coeff": 99.9 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.001046 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.489597, + "moment": [ + [ + 0.0, + 0.282669, + 0.0 + ], + [ + 0.282669, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -75.57867260453982, + "osc_stre": 0.0, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b2", + "energy": -6.4, + "spin": null + }, + "virt_orb": { + "index": 3, + "irrep": "b1", + "energy": 14.8, + "spin": null + }, + "coeff": 99.9 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.001276 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.809306, + "moment": [ + [ + 0.0, + -0.467253, + 0.0 + ], + [ + -0.467253, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -75.12879342459158, + "osc_stre": 0.0, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b2", + "energy": -6.4, + "spin": null + }, + "virt_orb": { + "index": 4, + "irrep": "b1", + "energy": 27.75, + "spin": null + }, + "coeff": 92.9 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + -5.5e-05 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 1.038458, + "moment": [ + [ + 0.0, + -0.599554, + 0.0 + ], + [ + -0.599554, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -75.0222176880603, + "osc_stre": 0.0, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b1", + "energy": -13.01, + "spin": null + }, + "virt_orb": { + "index": 2, + "irrep": "b2", + "energy": 23.42, + "spin": null + }, + "coeff": 92.9 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + -0.000574 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.74688, + "moment": [ + [ + 0.0, + -0.431211, + 0.0 + ], + [ + -0.431211, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -73.58540882603756, + "osc_stre": 0.0, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 3, + "irrep": "a1", + "energy": -8.44, + "spin": null + }, + "virt_orb": { + "index": 1, + "irrep": "a2", + "energy": 67.9, + "spin": null + }, + "coeff": 97.7 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + -0.000514 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.272294, + "moment": [ + [ + 0.0, + 0.157209, + 0.0 + ], + [ + 0.157209, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -73.36482833618534, + "osc_stre": 0.0, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b1", + "energy": -13.01, + "spin": null + }, + "virt_orb": { + "index": 3, + "irrep": "b2", + "energy": 68.79, + "spin": null + }, + "coeff": 96.7 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + -0.000644 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.191521, + "moment": [ + [ + 0.0, + -0.110574, + 0.0 + ], + [ + -0.110574, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -73.13420412838164, + "osc_stre": 0.0, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b2", + "energy": -6.4, + "spin": null + }, + "virt_orb": { + "index": 5, + "irrep": "b1", + "energy": 81.78, + "spin": null + }, + "coeff": 97.4 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + -0.000115 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.413375, + "moment": [ + [ + 0.0, + 0.238662, + 0.0 + ], + [ + 0.238662, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -73.00661741363095, + "osc_stre": 0.0, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 2, + "irrep": "a1", + "energy": -24.72, + "spin": null + }, + "virt_orb": { + "index": 1, + "irrep": "a2", + "energy": 67.9, + "spin": null + }, + "coeff": 99.0 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + -0.000688 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.793484, + "moment": [ + [ + 0.0, + -0.458118, + 0.0 + ], + [ + -0.458118, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -55.10014038527046, + "osc_stre": 0.0, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "a1", + "energy": -510.23, + "spin": null + }, + "virt_orb": { + "index": 1, + "irrep": "a2", + "energy": 67.9, + "spin": null + }, + "coeff": 100.0 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 3e-06 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.026689, + "moment": [ + [ + 0.0, + 0.015409, + 0.0 + ], + [ + 0.015409, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ] + ] + } + } + ] + } + ], + "b1": [ + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -75.94231204094471, + "osc_stre": 0.2262610442217877, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 3, + "irrep": "a1", + "energy": -8.44, + "spin": null + }, + "virt_orb": { + "index": 2, + "irrep": "b1", + "energy": 3.09, + "spin": null + }, + "coeff": 97.4 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + -0.920331, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + 0.001742, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.644868, + "moment": [ + [ + 0.0, + 0.0, + -0.372315 + ], + [ + 0.0, + 0.0, + 0.0 + ], + [ + -0.372315, + 0.0, + 0.0 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -75.8559820312836, + "osc_stre": 0.2777796399824467, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b1", + "energy": -13.01, + "spin": null + }, + "virt_orb": { + "index": 4, + "irrep": "a1", + "energy": 0.92, + "spin": null + }, + "coeff": 97.3 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.924955, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + -0.000309, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.552693, + "moment": [ + [ + 0.0, + 0.0, + 0.319097 + ], + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.319097, + 0.0, + 0.0 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -75.526049332718, + "osc_stre": 0.3581528903420834, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 3, + "irrep": "a1", + "energy": -8.44, + "spin": null + }, + "virt_orb": { + "index": 3, + "irrep": "b1", + "energy": 14.8, + "spin": null + }, + "coeff": 98.5 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.810924, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + -0.002865, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.964278, + "moment": [ + [ + 0.0, + 0.0, + -0.556726 + ], + [ + 0.0, + 0.0, + 0.0 + ], + [ + -0.556726, + 0.0, + 0.0 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -75.34552516922788, + "osc_stre": 0.08414035200812718, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 2, + "irrep": "a1", + "energy": -24.72, + "spin": null + }, + "virt_orb": { + "index": 2, + "irrep": "b1", + "energy": 3.09, + "spin": null + }, + "coeff": 92.0 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + -0.35571, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + 0.000818, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 1.036339, + "moment": [ + [ + 0.0, + 0.0, + -0.59833 + ], + [ + 0.0, + 0.0, + 0.0 + ], + [ + -0.59833, + 0.0, + 0.0 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -75.28797115415371, + "osc_stre": 0.2214315864696532, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b1", + "energy": -13.01, + "spin": null + }, + "virt_orb": { + "index": 5, + "irrep": "a1", + "energy": 17.22, + "spin": null + }, + "coeff": 90.4 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + -0.561089, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + -0.000368, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.373781, + "moment": [ + [ + 0.0, + 0.0, + -0.215802 + ], + [ + 0.0, + 0.0, + 0.0 + ], + [ + -0.215802, + 0.0, + 0.0 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -75.05974130599394, + "osc_stre": 0.1701379379535982, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 3, + "irrep": "a1", + "energy": -8.44, + "spin": null + }, + "virt_orb": { + "index": 4, + "irrep": "b1", + "energy": 27.75, + "spin": null + }, + "coeff": 78.9 + }, + { + "occ_orb": { + "index": 1, + "irrep": "b1", + "energy": -13.01, + "spin": null + }, + "virt_orb": { + "index": 6, + "irrep": "a1", + "energy": 23.83, + "spin": null + }, + "coeff": 21.0 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.445952, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + -0.00161, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 1.164301, + "moment": [ + [ + 0.0, + 0.0, + -0.67221 + ], + [ + 0.0, + 0.0, + 0.0 + ], + [ + -0.67221, + 0.0, + 0.0 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -75.00049027457096, + "osc_stre": 0.005612486793166832, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b1", + "energy": -13.01, + "spin": null + }, + "virt_orb": { + "index": 6, + "irrep": "a1", + "energy": 23.83, + "spin": null + }, + "coeff": 78.8 + }, + { + "occ_orb": { + "index": 3, + "irrep": "a1", + "energy": -8.44, + "spin": null + }, + "virt_orb": { + "index": 4, + "irrep": "b1", + "energy": 27.75, + "spin": null + }, + "coeff": 20.9 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + -0.079189, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + -0.000729, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.384568, + "moment": [ + [ + 0.0, + 0.0, + 0.22203 + ], + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.22203, + 0.0, + 0.0 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -74.92062784645103, + "osc_stre": 0.001383020408469612, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 2, + "irrep": "a1", + "energy": -24.72, + "spin": null + }, + "virt_orb": { + "index": 3, + "irrep": "b1", + "energy": 14.8, + "spin": null + }, + "coeff": 98.8 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + -0.03819, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + 0.000984, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 1.17932, + "moment": [ + [ + 0.0, + 0.0, + -0.680881 + ], + [ + 0.0, + 0.0, + 0.0 + ], + [ + -0.680881, + 0.0, + 0.0 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -74.79144022404836, + "osc_stre": 0.0311461276358944, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b1", + "energy": -13.01, + "spin": null + }, + "virt_orb": { + "index": 7, + "irrep": "a1", + "energy": 30.18, + "spin": null + }, + "coeff": 99.2 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + -0.173525, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + -0.000428, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.516707, + "moment": [ + [ + 0.0, + 0.0, + -0.298321 + ], + [ + 0.0, + 0.0, + 0.0 + ], + [ + -0.298321, + 0.0, + 0.0 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -74.44746414239671, + "osc_stre": 0.09313921044836769, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 2, + "irrep": "a1", + "energy": -24.72, + "spin": null + }, + "virt_orb": { + "index": 4, + "irrep": "b1", + "energy": 27.75, + "spin": null + }, + "coeff": 99.2 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + -0.271485, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + 0.000977, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.656364, + "moment": [ + [ + 0.0, + 0.0, + 0.378952 + ], + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.378952, + 0.0, + 0.0 + ] + ] + } + } + ] + } + ], + "b2": [ + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -76.08891309318071, + "osc_stre": 0.01444211774765394, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b2", + "energy": -6.4, + "spin": null + }, + "virt_orb": { + "index": 4, + "irrep": "a1", + "energy": 0.92, + "spin": null + }, + "coeff": 100.0 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.291988, + 0.0 + ], + "magnetic_dipole": [ + -0.000282, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.1709, + "moment": [ + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + -0.098669 + ], + [ + 0.0, + -0.098669, + 0.0 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -75.4998229128459, + "osc_stre": 0.1866850354372666, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b2", + "energy": -6.4, + "spin": null + }, + "virt_orb": { + "index": 5, + "irrep": "a1", + "energy": 17.22, + "spin": null + }, + "coeff": 99.8 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.576288, + 0.0 + ], + "magnetic_dipole": [ + 0.001725, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.451549, + "moment": [ + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + -0.260702 + ], + [ + 0.0, + -0.260702, + 0.0 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -75.28070931032175, + "osc_stre": 0.01184729127031465, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b2", + "energy": -6.4, + "spin": null + }, + "virt_orb": { + "index": 6, + "irrep": "a1", + "energy": 23.83, + "spin": null + }, + "coeff": 84.2 + }, + { + "occ_orb": { + "index": 3, + "irrep": "a1", + "energy": -8.44, + "spin": null + }, + "virt_orb": { + "index": 2, + "irrep": "b2", + "energy": 23.42, + "spin": null + }, + "coeff": 15.7 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + -0.12934, + 0.0 + ], + "magnetic_dipole": [ + -0.000399, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 1.470922, + "moment": [ + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.849237 + ], + [ + 0.0, + 0.849237, + 0.0 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -75.19063257920865, + "osc_stre": 1.706350575088063e-05, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 3, + "irrep": "a1", + "energy": -8.44, + "spin": null + }, + "virt_orb": { + "index": 2, + "irrep": "b2", + "energy": 23.42, + "spin": null + }, + "coeff": 84.2 + }, + { + "occ_orb": { + "index": 1, + "irrep": "b2", + "energy": -6.4, + "spin": null + }, + "virt_orb": { + "index": 6, + "irrep": "a1", + "energy": 23.83, + "spin": null + }, + "coeff": 15.7 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + -0.004713, + 0.0 + ], + "magnetic_dipole": [ + 0.000723, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.50837, + "moment": [ + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + -0.293507 + ], + [ + 0.0, + -0.293507, + 0.0 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -75.0478666594856, + "osc_stre": 0.52752901174764, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b2", + "energy": -6.4, + "spin": null + }, + "virt_orb": { + "index": 7, + "irrep": "a1", + "energy": 30.18, + "spin": null + }, + "coeff": 99.5 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + -0.781647, + 0.0 + ], + "magnetic_dipole": [ + -0.002174, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.520233, + "moment": [ + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.300356 + ], + [ + 0.0, + 0.300356, + 0.0 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -74.60446365779657, + "osc_stre": 0.07023608050783973, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 2, + "irrep": "a1", + "energy": -24.72, + "spin": null + }, + "virt_orb": { + "index": 2, + "irrep": "b2", + "energy": 23.42, + "spin": null + }, + "coeff": 99.4 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.246169, + 0.0 + ], + "magnetic_dipole": [ + 0.001221, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.063929, + "moment": [ + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + -0.036909 + ], + [ + 0.0, + -0.036909, + 0.0 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -73.68591641921864, + "osc_stre": 0.06977753602944474, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b2", + "energy": -6.4, + "spin": null + }, + "virt_orb": { + "index": 8, + "irrep": "a1", + "energy": 67.45, + "spin": null + }, + "coeff": 91.8 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.198472, + 0.0 + ], + "magnetic_dipole": [ + 0.00086, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.129434, + "moment": [ + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + -0.074729 + ], + [ + 0.0, + -0.074729, + 0.0 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -73.58415240678939, + "osc_stre": 1.098716013399029, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 3, + "irrep": "a1", + "energy": -8.44, + "spin": null + }, + "virt_orb": { + "index": 3, + "irrep": "b2", + "energy": 68.79, + "spin": null + }, + "coeff": 91.4 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.772901, + 0.0 + ], + "magnetic_dipole": [ + 0.003078, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 1.272895, + "moment": [ + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + -0.734906 + ], + [ + 0.0, + -0.734906, + 0.0 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -73.43561216778127, + "osc_stre": 0.3280400058904574, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b1", + "energy": -13.01, + "spin": null + }, + "virt_orb": { + "index": 1, + "irrep": "a2", + "energy": 67.9, + "spin": null + }, + "coeff": 95.3 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.411393, + 0.0 + ], + "magnetic_dipole": [ + 0.00117, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.340846, + "moment": [ + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + -0.196787 + ], + [ + 0.0, + -0.196787, + 0.0 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -73.33804858243694, + "osc_stre": 0.4465036699568586, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b2", + "energy": -6.4, + "spin": null + }, + "virt_orb": { + "index": 9, + "irrep": "a1", + "energy": 77.83, + "spin": null + }, + "coeff": 97.4 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.472105, + 0.0 + ], + "magnetic_dipole": [ + 0.002567, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.789818, + "moment": [ + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + -0.456002 + ], + [ + 0.0, + -0.456002, + 0.0 + ] + ] + } + } + ] + } + ] + } + }, + "run": { + "@module": "turbomoleio.output.data", + "@class": "RunData", + "@version": "1.3.0", + "host": "frontal3", + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:19:08.451000" + }, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:19:10.768000" + }, + "cpu_time": 0.21, + "wall_time": 2.38 + }, + "tm": { + "@module": "turbomoleio.output.data", + "@class": "TurbomoleData", + "@version": "1.3.0", + "version": "7.6", + "build": null, + "executable": "escf" + } +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/escf/h2o_ridft_rpat/ref_output.json b/turbomoleio/testfiles/outputs/TM_v7.6/escf/h2o_ridft_rpat/ref_output.json new file mode 100644 index 0000000..53bf85d --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/escf/h2o_ridft_rpat/ref_output.json @@ -0,0 +1,2706 @@ +{ + "@module": "turbomoleio.output.files", + "@class": "EscfOutput", + "@version": "1.3.0", + "dft": { + "@module": "turbomoleio.output.data", + "@class": "DFTData", + "@version": "1.3.0", + "functional": { + "@module": "turbomoleio.output.data", + "@class": "FunctionalData", + "@version": "1.3.0", + "msg": "B-P86 functional\n exchange: LDA + Becke (B88)\n correlation: LDA (VWN) + Perdew (P86)", + "name": "b-p", + "func_type": "GGA", + "xcfun": null + }, + "ri": null, + "spherical_gridsize": 3, + "gridpoints": 302, + "dispersion_correction": null + }, + "escf": { + "@module": "turbomoleio.output.data", + "@class": "EscfData", + "@version": "1.3.0", + "calc_type": "RPA TRIPLET-EXCITATION", + "iterations": { + "@module": "turbomoleio.output.data", + "@class": "EscfIterationData", + "@version": "1.3.0", + "steps": [ + [ + [ + "a1", + 0, + 0.1246374408123256 + ], + [ + "a2", + 9, + 7.348166357137622e-15 + ], + [ + "b1", + 0, + 0.09181206046462143 + ], + [ + "b2", + 10, + 5.215985075398134e-14 + ] + ], + [ + [ + "a1", + 10, + 7.745012815871526e-14 + ], + [ + "a2", + 9, + 7.348166357137622e-15 + ], + [ + "b1", + 10, + 4.175781234104372e-14 + ], + [ + "b2", + 10, + 5.215985075398134e-14 + ] + ] + ], + "converged": true + }, + "residuum_convergence_criterium": 1e-05, + "n_occupied_orbitals": 5, + "orbital_characterization": "scfconv=7", + "max_davidson_iter": 35, + "machine_precision": 2.22e-16, + "max_core_mem": 500.0, + "max_cao_basis_vectors": 155298, + "max_treated_vectors": 58, + "irrep_data": { + "a1": { + "tensor_space_dim": 24, + "n_roots": 10 + }, + "a2": { + "tensor_space_dim": 9, + "n_roots": 9 + }, + "b1": { + "tensor_space_dim": 19, + "n_roots": 10 + }, + "b2": { + "tensor_space_dim": 13, + "n_roots": 10 + } + }, + "gs_tot_en": -76.34300618267, + "excitations": { + "a1": [ + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -76.01823453488805, + "osc_stre": 0.1313093878710515, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 3, + "irrep": "a1", + "energy": -8.44, + "spin": null + }, + "virt_orb": { + "index": 4, + "irrep": "a1", + "energy": 0.92, + "spin": null + }, + "coeff": 99.6 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + -0.778761 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": -1.31433, + "anisotropy": 1.134437, + "moment": [ + [ + -1.162068, + 0.0, + 0.0 + ], + [ + 0.0, + -0.265591, + 0.0 + ], + [ + 0.0, + 0.0, + 0.11333 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -75.79291100961957, + "osc_stre": 0.174496449304758, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b1", + "energy": -13.01, + "spin": null + }, + "virt_orb": { + "index": 2, + "irrep": "b1", + "energy": 3.09, + "spin": null + }, + "coeff": 98.8 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + -0.689795 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": -3.252909, + "anisotropy": 1.972194, + "moment": [ + [ + -2.392923, + 0.0, + 0.0 + ], + [ + 0.0, + -0.540236, + 0.0 + ], + [ + 0.0, + 0.0, + -0.319752 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -75.45404366868868, + "osc_stre": 0.09084914009269274, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 3, + "irrep": "a1", + "energy": -8.44, + "spin": null + }, + "virt_orb": { + "index": 5, + "irrep": "a1", + "energy": 17.22, + "spin": null + }, + "coeff": 59.2 + }, + { + "occ_orb": { + "index": 2, + "irrep": "a1", + "energy": -24.72, + "spin": null + }, + "virt_orb": { + "index": 4, + "irrep": "a1", + "energy": 0.92, + "spin": null + }, + "coeff": 25.5 + }, + { + "occ_orb": { + "index": 1, + "irrep": "b1", + "energy": -13.01, + "spin": null + }, + "virt_orb": { + "index": 3, + "irrep": "b1", + "energy": 14.8, + "spin": null + }, + "coeff": 12.4 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + -0.391529 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": -1.202937, + "anisotropy": 0.869381, + "moment": [ + [ + -0.9741, + 0.0, + 0.0 + ], + [ + 0.0, + -0.189188, + 0.0 + ], + [ + 0.0, + 0.0, + -0.039649 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -75.41543956234747, + "osc_stre": 0.004405119560493983, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 2, + "irrep": "a1", + "energy": -24.72, + "spin": null + }, + "virt_orb": { + "index": 4, + "irrep": "a1", + "energy": 0.92, + "spin": null + }, + "coeff": 70.8 + }, + { + "occ_orb": { + "index": 3, + "irrep": "a1", + "energy": -8.44, + "spin": null + }, + "virt_orb": { + "index": 5, + "irrep": "a1", + "energy": 17.22, + "spin": null + }, + "coeff": 24.8 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + 0.084402 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": -2.3237520000000003, + "anisotropy": 0.201491, + "moment": [ + [ + -0.760907, + 0.0, + 0.0 + ], + [ + 0.0, + -0.665696, + 0.0 + ], + [ + 0.0, + 0.0, + -0.897149 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -75.37035195620906, + "osc_stre": 0.2839929522540723, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b1", + "energy": -13.01, + "spin": null + }, + "virt_orb": { + "index": 3, + "irrep": "b1", + "energy": 14.8, + "spin": null + }, + "coeff": 84.1 + }, + { + "occ_orb": { + "index": 3, + "irrep": "a1", + "energy": -8.44, + "spin": null + }, + "virt_orb": { + "index": 5, + "irrep": "a1", + "energy": 17.22, + "spin": null + }, + "coeff": 15.1 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + 0.66179 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": -1.5670349999999997, + "anisotropy": 0.241615, + "moment": [ + [ + -0.451837, + 0.0, + 0.0 + ], + [ + 0.0, + -0.432177, + 0.0 + ], + [ + 0.0, + 0.0, + -0.683021 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -75.33830226042343, + "osc_stre": 0.007296036371497148, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b2", + "energy": -6.4, + "spin": null + }, + "virt_orb": { + "index": 2, + "irrep": "b2", + "energy": 23.42, + "spin": null + }, + "coeff": 92.3 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + -0.104369 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 3.312759, + "anisotropy": 1.162583, + "moment": [ + [ + 0.512091, + 0.0, + 0.0 + ], + [ + 0.0, + 1.833394, + 0.0 + ], + [ + 0.0, + 0.0, + 0.967275 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -75.23643041802295, + "osc_stre": 0.05343328082331574, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 3, + "irrep": "a1", + "energy": -8.44, + "spin": null + }, + "virt_orb": { + "index": 6, + "irrep": "a1", + "energy": 23.83, + "spin": null + }, + "coeff": 94.5 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + -0.269129 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 2.392716, + "anisotropy": 1.621777, + "moment": [ + [ + 0.279761, + 0.0, + 0.0 + ], + [ + 0.0, + 0.234514, + 0.0 + ], + [ + 0.0, + 0.0, + 1.878441 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -74.95384853558053, + "osc_stre": 0.04811610985141787, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 3, + "irrep": "a1", + "energy": -8.44, + "spin": null + }, + "virt_orb": { + "index": 7, + "irrep": "a1", + "energy": 30.18, + "spin": null + }, + "coeff": 99.0 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + -0.227937 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.81279, + "anisotropy": 0.402903, + "moment": [ + [ + 0.539242, + 0.0, + 0.0 + ], + [ + 0.0, + 0.125974, + 0.0 + ], + [ + 0.0, + 0.0, + 0.147573 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -74.90839859812498, + "osc_stre": 0.04405808732321431, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b1", + "energy": -13.01, + "spin": null + }, + "virt_orb": { + "index": 4, + "irrep": "b1", + "energy": 27.75, + "spin": null + }, + "coeff": 95.8 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + 0.214631 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": -1.2207, + "anisotropy": 0.563509, + "moment": [ + [ + -0.780046, + 0.0, + 0.0 + ], + [ + 0.0, + -0.182657, + 0.0 + ], + [ + 0.0, + 0.0, + -0.257997 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -74.84207924518309, + "osc_stre": 0.009423586862392063, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 2, + "irrep": "a1", + "energy": -24.72, + "spin": null + }, + "virt_orb": { + "index": 5, + "irrep": "a1", + "energy": 17.22, + "spin": null + }, + "coeff": 95.7 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + 0.097045 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.302259, + "anisotropy": 1.003757, + "moment": [ + [ + 0.713084, + 0.0, + 0.0 + ], + [ + 0.0, + -0.439145, + 0.0 + ], + [ + 0.0, + 0.0, + 0.02832 + ] + ] + } + } + ] + } + ], + "a2": [ + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -76.00822783802636, + "osc_stre": 0.0, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b2", + "energy": -6.4, + "spin": null + }, + "virt_orb": { + "index": 2, + "irrep": "b1", + "energy": 3.09, + "spin": null + }, + "coeff": 99.9 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.001046 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.489597, + "moment": [ + [ + 0.0, + 0.282669, + 0.0 + ], + [ + 0.282669, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -75.57867260453982, + "osc_stre": 0.0, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b2", + "energy": -6.4, + "spin": null + }, + "virt_orb": { + "index": 3, + "irrep": "b1", + "energy": 14.8, + "spin": null + }, + "coeff": 99.9 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.001276 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.809306, + "moment": [ + [ + 0.0, + -0.467253, + 0.0 + ], + [ + -0.467253, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -75.12879342459158, + "osc_stre": 0.0, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b2", + "energy": -6.4, + "spin": null + }, + "virt_orb": { + "index": 4, + "irrep": "b1", + "energy": 27.75, + "spin": null + }, + "coeff": 92.9 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + -5.5e-05 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 1.038458, + "moment": [ + [ + 0.0, + -0.599554, + 0.0 + ], + [ + -0.599554, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -75.0222176880603, + "osc_stre": 0.0, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b1", + "energy": -13.01, + "spin": null + }, + "virt_orb": { + "index": 2, + "irrep": "b2", + "energy": 23.42, + "spin": null + }, + "coeff": 92.9 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + -0.000574 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.74688, + "moment": [ + [ + 0.0, + -0.431211, + 0.0 + ], + [ + -0.431211, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -73.58540882603756, + "osc_stre": 0.0, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 3, + "irrep": "a1", + "energy": -8.44, + "spin": null + }, + "virt_orb": { + "index": 1, + "irrep": "a2", + "energy": 67.9, + "spin": null + }, + "coeff": 97.7 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + -0.000514 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.272294, + "moment": [ + [ + 0.0, + 0.157209, + 0.0 + ], + [ + 0.157209, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -73.36482833618534, + "osc_stre": 0.0, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b1", + "energy": -13.01, + "spin": null + }, + "virt_orb": { + "index": 3, + "irrep": "b2", + "energy": 68.79, + "spin": null + }, + "coeff": 96.7 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + -0.000644 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.191521, + "moment": [ + [ + 0.0, + -0.110574, + 0.0 + ], + [ + -0.110574, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -73.13420412838164, + "osc_stre": 0.0, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b2", + "energy": -6.4, + "spin": null + }, + "virt_orb": { + "index": 5, + "irrep": "b1", + "energy": 81.78, + "spin": null + }, + "coeff": 97.4 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + -0.000115 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.413375, + "moment": [ + [ + 0.0, + 0.238662, + 0.0 + ], + [ + 0.238662, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -73.00661741363095, + "osc_stre": 0.0, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 2, + "irrep": "a1", + "energy": -24.72, + "spin": null + }, + "virt_orb": { + "index": 1, + "irrep": "a2", + "energy": 67.9, + "spin": null + }, + "coeff": 99.0 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + -0.000688 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.793484, + "moment": [ + [ + 0.0, + -0.458118, + 0.0 + ], + [ + -0.458118, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -55.10014038527046, + "osc_stre": 0.0, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "a1", + "energy": -510.23, + "spin": null + }, + "virt_orb": { + "index": 1, + "irrep": "a2", + "energy": 67.9, + "spin": null + }, + "coeff": 100.0 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 3e-06 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.026689, + "moment": [ + [ + 0.0, + 0.015409, + 0.0 + ], + [ + 0.015409, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ] + ] + } + } + ] + } + ], + "b1": [ + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -75.94231204094471, + "osc_stre": 0.2262610442217877, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 3, + "irrep": "a1", + "energy": -8.44, + "spin": null + }, + "virt_orb": { + "index": 2, + "irrep": "b1", + "energy": 3.09, + "spin": null + }, + "coeff": 97.4 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + -0.920331, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + 0.001742, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.644868, + "moment": [ + [ + 0.0, + 0.0, + -0.372315 + ], + [ + 0.0, + 0.0, + 0.0 + ], + [ + -0.372315, + 0.0, + 0.0 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -75.8559820312836, + "osc_stre": 0.2777796399824467, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b1", + "energy": -13.01, + "spin": null + }, + "virt_orb": { + "index": 4, + "irrep": "a1", + "energy": 0.92, + "spin": null + }, + "coeff": 97.3 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.924955, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + -0.000309, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.552693, + "moment": [ + [ + 0.0, + 0.0, + 0.319097 + ], + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.319097, + 0.0, + 0.0 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -75.526049332718, + "osc_stre": 0.3581528903420834, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 3, + "irrep": "a1", + "energy": -8.44, + "spin": null + }, + "virt_orb": { + "index": 3, + "irrep": "b1", + "energy": 14.8, + "spin": null + }, + "coeff": 98.5 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.810924, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + -0.002865, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.964278, + "moment": [ + [ + 0.0, + 0.0, + -0.556726 + ], + [ + 0.0, + 0.0, + 0.0 + ], + [ + -0.556726, + 0.0, + 0.0 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -75.34552516922788, + "osc_stre": 0.08414035200812718, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 2, + "irrep": "a1", + "energy": -24.72, + "spin": null + }, + "virt_orb": { + "index": 2, + "irrep": "b1", + "energy": 3.09, + "spin": null + }, + "coeff": 92.0 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + -0.35571, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + 0.000818, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 1.036339, + "moment": [ + [ + 0.0, + 0.0, + -0.59833 + ], + [ + 0.0, + 0.0, + 0.0 + ], + [ + -0.59833, + 0.0, + 0.0 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -75.28797115415371, + "osc_stre": 0.2214315864696532, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b1", + "energy": -13.01, + "spin": null + }, + "virt_orb": { + "index": 5, + "irrep": "a1", + "energy": 17.22, + "spin": null + }, + "coeff": 90.4 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + -0.561089, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + -0.000368, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.373781, + "moment": [ + [ + 0.0, + 0.0, + -0.215802 + ], + [ + 0.0, + 0.0, + 0.0 + ], + [ + -0.215802, + 0.0, + 0.0 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -75.05974130599394, + "osc_stre": 0.1701379379535982, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 3, + "irrep": "a1", + "energy": -8.44, + "spin": null + }, + "virt_orb": { + "index": 4, + "irrep": "b1", + "energy": 27.75, + "spin": null + }, + "coeff": 78.9 + }, + { + "occ_orb": { + "index": 1, + "irrep": "b1", + "energy": -13.01, + "spin": null + }, + "virt_orb": { + "index": 6, + "irrep": "a1", + "energy": 23.83, + "spin": null + }, + "coeff": 21.0 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.445952, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + -0.00161, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 1.164301, + "moment": [ + [ + 0.0, + 0.0, + -0.67221 + ], + [ + 0.0, + 0.0, + 0.0 + ], + [ + -0.67221, + 0.0, + 0.0 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -75.00049027457096, + "osc_stre": 0.005612486793166832, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b1", + "energy": -13.01, + "spin": null + }, + "virt_orb": { + "index": 6, + "irrep": "a1", + "energy": 23.83, + "spin": null + }, + "coeff": 78.8 + }, + { + "occ_orb": { + "index": 3, + "irrep": "a1", + "energy": -8.44, + "spin": null + }, + "virt_orb": { + "index": 4, + "irrep": "b1", + "energy": 27.75, + "spin": null + }, + "coeff": 20.9 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + -0.079189, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + -0.000729, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.384568, + "moment": [ + [ + 0.0, + 0.0, + 0.22203 + ], + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.22203, + 0.0, + 0.0 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -74.92062784645103, + "osc_stre": 0.001383020408469612, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 2, + "irrep": "a1", + "energy": -24.72, + "spin": null + }, + "virt_orb": { + "index": 3, + "irrep": "b1", + "energy": 14.8, + "spin": null + }, + "coeff": 98.8 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + -0.03819, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + 0.000984, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 1.17932, + "moment": [ + [ + 0.0, + 0.0, + -0.680881 + ], + [ + 0.0, + 0.0, + 0.0 + ], + [ + -0.680881, + 0.0, + 0.0 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -74.79144022404836, + "osc_stre": 0.0311461276358944, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b1", + "energy": -13.01, + "spin": null + }, + "virt_orb": { + "index": 7, + "irrep": "a1", + "energy": 30.18, + "spin": null + }, + "coeff": 99.2 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + -0.173525, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + -0.000428, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.516707, + "moment": [ + [ + 0.0, + 0.0, + -0.298321 + ], + [ + 0.0, + 0.0, + 0.0 + ], + [ + -0.298321, + 0.0, + 0.0 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -74.44746414239671, + "osc_stre": 0.09313921044836769, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 2, + "irrep": "a1", + "energy": -24.72, + "spin": null + }, + "virt_orb": { + "index": 4, + "irrep": "b1", + "energy": 27.75, + "spin": null + }, + "coeff": 99.2 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + -0.271485, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + 0.000977, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.656364, + "moment": [ + [ + 0.0, + 0.0, + 0.378952 + ], + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.378952, + 0.0, + 0.0 + ] + ] + } + } + ] + } + ], + "b2": [ + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -76.08891309318071, + "osc_stre": 0.01444211774765394, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b2", + "energy": -6.4, + "spin": null + }, + "virt_orb": { + "index": 4, + "irrep": "a1", + "energy": 0.92, + "spin": null + }, + "coeff": 100.0 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.291988, + 0.0 + ], + "magnetic_dipole": [ + -0.000282, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.1709, + "moment": [ + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + -0.098669 + ], + [ + 0.0, + -0.098669, + 0.0 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -75.4998229128459, + "osc_stre": 0.1866850354372666, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b2", + "energy": -6.4, + "spin": null + }, + "virt_orb": { + "index": 5, + "irrep": "a1", + "energy": 17.22, + "spin": null + }, + "coeff": 99.8 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.576288, + 0.0 + ], + "magnetic_dipole": [ + 0.001725, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.451549, + "moment": [ + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + -0.260702 + ], + [ + 0.0, + -0.260702, + 0.0 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -75.28070931032175, + "osc_stre": 0.01184729127031465, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b2", + "energy": -6.4, + "spin": null + }, + "virt_orb": { + "index": 6, + "irrep": "a1", + "energy": 23.83, + "spin": null + }, + "coeff": 84.2 + }, + { + "occ_orb": { + "index": 3, + "irrep": "a1", + "energy": -8.44, + "spin": null + }, + "virt_orb": { + "index": 2, + "irrep": "b2", + "energy": 23.42, + "spin": null + }, + "coeff": 15.7 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + -0.12934, + 0.0 + ], + "magnetic_dipole": [ + -0.000399, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 1.470922, + "moment": [ + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.849237 + ], + [ + 0.0, + 0.849237, + 0.0 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -75.19063257920865, + "osc_stre": 1.706350575088063e-05, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 3, + "irrep": "a1", + "energy": -8.44, + "spin": null + }, + "virt_orb": { + "index": 2, + "irrep": "b2", + "energy": 23.42, + "spin": null + }, + "coeff": 84.2 + }, + { + "occ_orb": { + "index": 1, + "irrep": "b2", + "energy": -6.4, + "spin": null + }, + "virt_orb": { + "index": 6, + "irrep": "a1", + "energy": 23.83, + "spin": null + }, + "coeff": 15.7 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + -0.004713, + 0.0 + ], + "magnetic_dipole": [ + 0.000723, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.50837, + "moment": [ + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + -0.293507 + ], + [ + 0.0, + -0.293507, + 0.0 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -75.0478666594856, + "osc_stre": 0.52752901174764, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b2", + "energy": -6.4, + "spin": null + }, + "virt_orb": { + "index": 7, + "irrep": "a1", + "energy": 30.18, + "spin": null + }, + "coeff": 99.5 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + -0.781647, + 0.0 + ], + "magnetic_dipole": [ + -0.002174, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.520233, + "moment": [ + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.300356 + ], + [ + 0.0, + 0.300356, + 0.0 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -74.60446365779657, + "osc_stre": 0.07023608050783973, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 2, + "irrep": "a1", + "energy": -24.72, + "spin": null + }, + "virt_orb": { + "index": 2, + "irrep": "b2", + "energy": 23.42, + "spin": null + }, + "coeff": 99.4 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.246169, + 0.0 + ], + "magnetic_dipole": [ + 0.001221, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.063929, + "moment": [ + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + -0.036909 + ], + [ + 0.0, + -0.036909, + 0.0 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -73.68591641921864, + "osc_stre": 0.06977753602944474, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b2", + "energy": -6.4, + "spin": null + }, + "virt_orb": { + "index": 8, + "irrep": "a1", + "energy": 67.45, + "spin": null + }, + "coeff": 91.8 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.198472, + 0.0 + ], + "magnetic_dipole": [ + 0.00086, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.129434, + "moment": [ + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + -0.074729 + ], + [ + 0.0, + -0.074729, + 0.0 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -73.58415240678939, + "osc_stre": 1.098716013399029, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 3, + "irrep": "a1", + "energy": -8.44, + "spin": null + }, + "virt_orb": { + "index": 3, + "irrep": "b2", + "energy": 68.79, + "spin": null + }, + "coeff": 91.4 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.772901, + 0.0 + ], + "magnetic_dipole": [ + 0.003078, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 1.272895, + "moment": [ + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + -0.734906 + ], + [ + 0.0, + -0.734906, + 0.0 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -73.43561216778127, + "osc_stre": 0.3280400058904574, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b1", + "energy": -13.01, + "spin": null + }, + "virt_orb": { + "index": 1, + "irrep": "a2", + "energy": 67.9, + "spin": null + }, + "coeff": 95.3 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.411393, + 0.0 + ], + "magnetic_dipole": [ + 0.00117, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.340846, + "moment": [ + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + -0.196787 + ], + [ + 0.0, + -0.196787, + 0.0 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -73.33804858243694, + "osc_stre": 0.4465036699568586, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b2", + "energy": -6.4, + "spin": null + }, + "virt_orb": { + "index": 9, + "irrep": "a1", + "energy": 77.83, + "spin": null + }, + "coeff": 97.4 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.472105, + 0.0 + ], + "magnetic_dipole": [ + 0.002567, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.789818, + "moment": [ + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + -0.456002 + ], + [ + 0.0, + -0.456002, + 0.0 + ] + ] + } + } + ] + } + ] + } + }, + "geometry": { + "@module": "turbomoleio.output.data", + "@class": "GeometryData", + "@version": "1.3.0", + "center_of_mass": [ + 0.0, + 0.0, + -0.60378908 + ], + "center_of_charge": [ + 0.0, + 0.0, + -0.50790525 + ], + "molecule": { + "@module": "pymatgen.core.structure", + "@class": "Molecule", + "charge": 0.0, + "spin_multiplicity": 1, + "sites": [ + { + "name": "O", + "species": [ + { + "element": "O", + "occu": 1 + } + ], + "xyz": [ + 0.0, + 0.0, + -0.38395982917561094 + ], + "properties": {} + }, + { + "name": "H", + "species": [ + { + "element": "H", + "occu": 1 + } + ], + "xyz": [ + 0.7499151287230262, + 0.0, + 0.19197991458780547 + ], + "properties": {} + }, + { + "name": "H", + "species": [ + { + "element": "H", + "occu": 1 + } + ], + "xyz": [ + -0.7499151287230262, + 0.0, + 0.19197991458780547 + ], + "properties": {} + } + ] + } + }, + "basis": { + "@module": "turbomoleio.output.data", + "@class": "BasisData", + "@version": "1.3.0", + "basis_per_specie": { + "o": "def-SV(P)", + "h": "def-SV(P)" + }, + "aux_basis_per_specie": {}, + "number_scf_basis_func": 18, + "number_scf_aux_basis_func": 47 + }, + "run": { + "@module": "turbomoleio.output.data", + "@class": "RunData", + "@version": "1.3.0", + "host": "frontal3", + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:19:08.451000" + }, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:19:10.768000" + }, + "cpu_time": 0.21, + "wall_time": 2.38 + }, + "tm": { + "@module": "turbomoleio.output.data", + "@class": "TurbomoleData", + "@version": "1.3.0", + "version": "7.6", + "build": null, + "executable": "escf" + }, + "cosmo": null, + "integral": { + "@module": "turbomoleio.output.data", + "@class": "IntegralData", + "@version": "1.3.0", + "integral_neglect_threshold": 3.3e-11, + "thize": 1e-05, + "thime": 5 + }, + "symmetry": { + "@module": "turbomoleio.output.data", + "@class": "SymmetryData", + "@version": "1.3.0", + "symbol": "c2v", + "n_reps": 4, + "reps": [ + "a1", + "a2", + "b1", + "b2" + ] + } +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/escf/h2o_ridft_rpat/ref_parser.json b/turbomoleio/testfiles/outputs/TM_v7.6/escf/h2o_ridft_rpat/ref_parser.json new file mode 100644 index 0000000..22f4820 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/escf/h2o_ridft_rpat/ref_parser.json @@ -0,0 +1,2558 @@ +{ + "all_done": true, + "header": { + "executable": "escf", + "host": "frontal3", + "tm_version": "7.6", + "tm_build": null, + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:19:08.451000" + } + }, + "centers": { + "center_of_mass": [ + 0.0, + 0.0, + -0.60378908 + ], + "center_of_charge": [ + 0.0, + 0.0, + -0.50790525 + ] + }, + "coordinates": { + "coords": [ + [ + 0.0, + 0.0, + -0.72557892 + ], + [ + 1.41713421, + 0.0, + 0.36278946 + ], + [ + -1.41713421, + 0.0, + 0.36278946 + ] + ], + "species": [ + "o", + "h", + "h" + ], + "charges": [ + 8.0, + 1.0, + 1.0 + ], + "isotopes": [ + 0, + 0, + 0 + ] + }, + "basis": { + "basis_per_specie": { + "o": "def-SV(P)", + "h": "def-SV(P)" + }, + "aux_basis_per_specie": {}, + "number_scf_basis_func": 18, + "number_scf_aux_basis_func": 47 + }, + "symmetry": { + "symbol": "c2v", + "n_reps": 4, + "reps": [ + "a1", + "a2", + "b1", + "b2" + ] + }, + "cosmo_header": null, + "density_functional_data": { + "functional_msg": "B-P86 functional\n exchange: LDA + Becke (B88)\n correlation: LDA (VWN) + Perdew (P86)", + "functional_name": "b-p", + "functional_type": "GGA", + "xcfun": null, + "spherical_gridsize": 3, + "gridpoints": 302 + }, + "rij_info": null, + "dftd": null, + "pre_scf_run": null, + "scf_iterations": null, + "scf_energies": null, + "cosmo_results": null, + "electrostatic_moments": null, + "timings": { + "cpu_time": 0.21, + "wall_time": 2.38, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:19:10.768000" + } + }, + "s2": null, + "is_uhf": false, + "fermi": null, + "integral": { + "integral_neglect_threshold": 3.3e-11, + "thize": 1e-05, + "thime": 5 + }, + "pre_escf_run": { + "calc_type": "RPA TRIPLET-EXCITATION", + "residuum_convergence_criterium": 1e-05, + "n_occupied_orbitals": 5, + "orbital_characterization": "scfconv=7", + "max_davidson_iter": 35, + "machine_precision": 2.22e-16, + "max_core_mem": 500.0, + "max_cao_basis_vectors": 155298, + "max_treated_vectors": 58, + "irrep_data": { + "a1": { + "tensor_space_dim": 24, + "n_roots": 10 + }, + "a2": { + "tensor_space_dim": 9, + "n_roots": 9 + }, + "b1": { + "tensor_space_dim": 19, + "n_roots": 10 + }, + "b2": { + "tensor_space_dim": 13, + "n_roots": 10 + } + } + }, + "escf_iterations": { + "steps": [ + [ + [ + "a1", + 0, + 0.1246374408123256 + ], + [ + "a2", + 9, + 7.348166357137622e-15 + ], + [ + "b1", + 0, + 0.09181206046462143 + ], + [ + "b2", + 10, + 5.215985075398134e-14 + ] + ], + [ + [ + "a1", + 10, + 7.745012815871526e-14 + ], + [ + "a2", + 9, + 7.348166357137622e-15 + ], + [ + "b1", + 10, + 4.175781234104372e-14 + ], + [ + "b2", + 10, + 5.215985075398134e-14 + ] + ] + ], + "converged": true + }, + "escf_gs_total_en": -76.34300618267, + "escf_excitations": { + "a1": [ + { + "tot_en": -76.01823453488805, + "osc_stre": 0.1313093878710515, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 3, + "irrep": "a1", + "energy": -8.44, + "spin": null + }, + "virt_orb": { + "index": 4, + "irrep": "a1", + "energy": 0.92, + "spin": null + }, + "coeff": 99.6 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + -0.778761 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": -1.31433, + "anisotropy": 1.134437, + "moment": [ + [ + -1.162068, + 0.0, + 0.0 + ], + [ + 0.0, + -0.265591, + 0.0 + ], + [ + 0.0, + 0.0, + 0.11333 + ] + ] + } + } + ] + }, + { + "tot_en": -75.79291100961957, + "osc_stre": 0.174496449304758, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b1", + "energy": -13.01, + "spin": null + }, + "virt_orb": { + "index": 2, + "irrep": "b1", + "energy": 3.09, + "spin": null + }, + "coeff": 98.8 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + -0.689795 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": -3.252909, + "anisotropy": 1.972194, + "moment": [ + [ + -2.392923, + 0.0, + 0.0 + ], + [ + 0.0, + -0.540236, + 0.0 + ], + [ + 0.0, + 0.0, + -0.319752 + ] + ] + } + } + ] + }, + { + "tot_en": -75.45404366868868, + "osc_stre": 0.09084914009269274, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 3, + "irrep": "a1", + "energy": -8.44, + "spin": null + }, + "virt_orb": { + "index": 5, + "irrep": "a1", + "energy": 17.22, + "spin": null + }, + "coeff": 59.2 + }, + { + "occ_orb": { + "index": 2, + "irrep": "a1", + "energy": -24.72, + "spin": null + }, + "virt_orb": { + "index": 4, + "irrep": "a1", + "energy": 0.92, + "spin": null + }, + "coeff": 25.5 + }, + { + "occ_orb": { + "index": 1, + "irrep": "b1", + "energy": -13.01, + "spin": null + }, + "virt_orb": { + "index": 3, + "irrep": "b1", + "energy": 14.8, + "spin": null + }, + "coeff": 12.4 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + -0.391529 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": -1.202937, + "anisotropy": 0.869381, + "moment": [ + [ + -0.9741, + 0.0, + 0.0 + ], + [ + 0.0, + -0.189188, + 0.0 + ], + [ + 0.0, + 0.0, + -0.039649 + ] + ] + } + } + ] + }, + { + "tot_en": -75.41543956234747, + "osc_stre": 0.004405119560493983, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 2, + "irrep": "a1", + "energy": -24.72, + "spin": null + }, + "virt_orb": { + "index": 4, + "irrep": "a1", + "energy": 0.92, + "spin": null + }, + "coeff": 70.8 + }, + { + "occ_orb": { + "index": 3, + "irrep": "a1", + "energy": -8.44, + "spin": null + }, + "virt_orb": { + "index": 5, + "irrep": "a1", + "energy": 17.22, + "spin": null + }, + "coeff": 24.8 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + 0.084402 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": -2.3237520000000003, + "anisotropy": 0.201491, + "moment": [ + [ + -0.760907, + 0.0, + 0.0 + ], + [ + 0.0, + -0.665696, + 0.0 + ], + [ + 0.0, + 0.0, + -0.897149 + ] + ] + } + } + ] + }, + { + "tot_en": -75.37035195620906, + "osc_stre": 0.2839929522540723, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b1", + "energy": -13.01, + "spin": null + }, + "virt_orb": { + "index": 3, + "irrep": "b1", + "energy": 14.8, + "spin": null + }, + "coeff": 84.1 + }, + { + "occ_orb": { + "index": 3, + "irrep": "a1", + "energy": -8.44, + "spin": null + }, + "virt_orb": { + "index": 5, + "irrep": "a1", + "energy": 17.22, + "spin": null + }, + "coeff": 15.1 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + 0.66179 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": -1.5670349999999997, + "anisotropy": 0.241615, + "moment": [ + [ + -0.451837, + 0.0, + 0.0 + ], + [ + 0.0, + -0.432177, + 0.0 + ], + [ + 0.0, + 0.0, + -0.683021 + ] + ] + } + } + ] + }, + { + "tot_en": -75.33830226042343, + "osc_stre": 0.007296036371497148, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b2", + "energy": -6.4, + "spin": null + }, + "virt_orb": { + "index": 2, + "irrep": "b2", + "energy": 23.42, + "spin": null + }, + "coeff": 92.3 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + -0.104369 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 3.312759, + "anisotropy": 1.162583, + "moment": [ + [ + 0.512091, + 0.0, + 0.0 + ], + [ + 0.0, + 1.833394, + 0.0 + ], + [ + 0.0, + 0.0, + 0.967275 + ] + ] + } + } + ] + }, + { + "tot_en": -75.23643041802295, + "osc_stre": 0.05343328082331574, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 3, + "irrep": "a1", + "energy": -8.44, + "spin": null + }, + "virt_orb": { + "index": 6, + "irrep": "a1", + "energy": 23.83, + "spin": null + }, + "coeff": 94.5 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + -0.269129 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 2.392716, + "anisotropy": 1.621777, + "moment": [ + [ + 0.279761, + 0.0, + 0.0 + ], + [ + 0.0, + 0.234514, + 0.0 + ], + [ + 0.0, + 0.0, + 1.878441 + ] + ] + } + } + ] + }, + { + "tot_en": -74.95384853558053, + "osc_stre": 0.04811610985141787, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 3, + "irrep": "a1", + "energy": -8.44, + "spin": null + }, + "virt_orb": { + "index": 7, + "irrep": "a1", + "energy": 30.18, + "spin": null + }, + "coeff": 99.0 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + -0.227937 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.81279, + "anisotropy": 0.402903, + "moment": [ + [ + 0.539242, + 0.0, + 0.0 + ], + [ + 0.0, + 0.125974, + 0.0 + ], + [ + 0.0, + 0.0, + 0.147573 + ] + ] + } + } + ] + }, + { + "tot_en": -74.90839859812498, + "osc_stre": 0.04405808732321431, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b1", + "energy": -13.01, + "spin": null + }, + "virt_orb": { + "index": 4, + "irrep": "b1", + "energy": 27.75, + "spin": null + }, + "coeff": 95.8 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + 0.214631 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": -1.2207, + "anisotropy": 0.563509, + "moment": [ + [ + -0.780046, + 0.0, + 0.0 + ], + [ + 0.0, + -0.182657, + 0.0 + ], + [ + 0.0, + 0.0, + -0.257997 + ] + ] + } + } + ] + }, + { + "tot_en": -74.84207924518309, + "osc_stre": 0.009423586862392063, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 2, + "irrep": "a1", + "energy": -24.72, + "spin": null + }, + "virt_orb": { + "index": 5, + "irrep": "a1", + "energy": 17.22, + "spin": null + }, + "coeff": 95.7 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + 0.097045 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.302259, + "anisotropy": 1.003757, + "moment": [ + [ + 0.713084, + 0.0, + 0.0 + ], + [ + 0.0, + -0.439145, + 0.0 + ], + [ + 0.0, + 0.0, + 0.02832 + ] + ] + } + } + ] + } + ], + "a2": [ + { + "tot_en": -76.00822783802636, + "osc_stre": 0.0, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b2", + "energy": -6.4, + "spin": null + }, + "virt_orb": { + "index": 2, + "irrep": "b1", + "energy": 3.09, + "spin": null + }, + "coeff": 99.9 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.001046 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.489597, + "moment": [ + [ + 0.0, + 0.282669, + 0.0 + ], + [ + 0.282669, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ] + ] + } + } + ] + }, + { + "tot_en": -75.57867260453982, + "osc_stre": 0.0, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b2", + "energy": -6.4, + "spin": null + }, + "virt_orb": { + "index": 3, + "irrep": "b1", + "energy": 14.8, + "spin": null + }, + "coeff": 99.9 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.001276 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.809306, + "moment": [ + [ + 0.0, + -0.467253, + 0.0 + ], + [ + -0.467253, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ] + ] + } + } + ] + }, + { + "tot_en": -75.12879342459158, + "osc_stre": 0.0, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b2", + "energy": -6.4, + "spin": null + }, + "virt_orb": { + "index": 4, + "irrep": "b1", + "energy": 27.75, + "spin": null + }, + "coeff": 92.9 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + -5.5e-05 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 1.038458, + "moment": [ + [ + 0.0, + -0.599554, + 0.0 + ], + [ + -0.599554, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ] + ] + } + } + ] + }, + { + "tot_en": -75.0222176880603, + "osc_stre": 0.0, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b1", + "energy": -13.01, + "spin": null + }, + "virt_orb": { + "index": 2, + "irrep": "b2", + "energy": 23.42, + "spin": null + }, + "coeff": 92.9 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + -0.000574 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.74688, + "moment": [ + [ + 0.0, + -0.431211, + 0.0 + ], + [ + -0.431211, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ] + ] + } + } + ] + }, + { + "tot_en": -73.58540882603756, + "osc_stre": 0.0, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 3, + "irrep": "a1", + "energy": -8.44, + "spin": null + }, + "virt_orb": { + "index": 1, + "irrep": "a2", + "energy": 67.9, + "spin": null + }, + "coeff": 97.7 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + -0.000514 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.272294, + "moment": [ + [ + 0.0, + 0.157209, + 0.0 + ], + [ + 0.157209, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ] + ] + } + } + ] + }, + { + "tot_en": -73.36482833618534, + "osc_stre": 0.0, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b1", + "energy": -13.01, + "spin": null + }, + "virt_orb": { + "index": 3, + "irrep": "b2", + "energy": 68.79, + "spin": null + }, + "coeff": 96.7 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + -0.000644 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.191521, + "moment": [ + [ + 0.0, + -0.110574, + 0.0 + ], + [ + -0.110574, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ] + ] + } + } + ] + }, + { + "tot_en": -73.13420412838164, + "osc_stre": 0.0, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b2", + "energy": -6.4, + "spin": null + }, + "virt_orb": { + "index": 5, + "irrep": "b1", + "energy": 81.78, + "spin": null + }, + "coeff": 97.4 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + -0.000115 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.413375, + "moment": [ + [ + 0.0, + 0.238662, + 0.0 + ], + [ + 0.238662, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ] + ] + } + } + ] + }, + { + "tot_en": -73.00661741363095, + "osc_stre": 0.0, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 2, + "irrep": "a1", + "energy": -24.72, + "spin": null + }, + "virt_orb": { + "index": 1, + "irrep": "a2", + "energy": 67.9, + "spin": null + }, + "coeff": 99.0 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + -0.000688 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.793484, + "moment": [ + [ + 0.0, + -0.458118, + 0.0 + ], + [ + -0.458118, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ] + ] + } + } + ] + }, + { + "tot_en": -55.10014038527046, + "osc_stre": 0.0, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "a1", + "energy": -510.23, + "spin": null + }, + "virt_orb": { + "index": 1, + "irrep": "a2", + "energy": 67.9, + "spin": null + }, + "coeff": 100.0 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 3e-06 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.026689, + "moment": [ + [ + 0.0, + 0.015409, + 0.0 + ], + [ + 0.015409, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ] + ] + } + } + ] + } + ], + "b1": [ + { + "tot_en": -75.94231204094471, + "osc_stre": 0.2262610442217877, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 3, + "irrep": "a1", + "energy": -8.44, + "spin": null + }, + "virt_orb": { + "index": 2, + "irrep": "b1", + "energy": 3.09, + "spin": null + }, + "coeff": 97.4 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + -0.920331, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + 0.001742, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.644868, + "moment": [ + [ + 0.0, + 0.0, + -0.372315 + ], + [ + 0.0, + 0.0, + 0.0 + ], + [ + -0.372315, + 0.0, + 0.0 + ] + ] + } + } + ] + }, + { + "tot_en": -75.8559820312836, + "osc_stre": 0.2777796399824467, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b1", + "energy": -13.01, + "spin": null + }, + "virt_orb": { + "index": 4, + "irrep": "a1", + "energy": 0.92, + "spin": null + }, + "coeff": 97.3 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.924955, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + -0.000309, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.552693, + "moment": [ + [ + 0.0, + 0.0, + 0.319097 + ], + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.319097, + 0.0, + 0.0 + ] + ] + } + } + ] + }, + { + "tot_en": -75.526049332718, + "osc_stre": 0.3581528903420834, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 3, + "irrep": "a1", + "energy": -8.44, + "spin": null + }, + "virt_orb": { + "index": 3, + "irrep": "b1", + "energy": 14.8, + "spin": null + }, + "coeff": 98.5 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.810924, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + -0.002865, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.964278, + "moment": [ + [ + 0.0, + 0.0, + -0.556726 + ], + [ + 0.0, + 0.0, + 0.0 + ], + [ + -0.556726, + 0.0, + 0.0 + ] + ] + } + } + ] + }, + { + "tot_en": -75.34552516922788, + "osc_stre": 0.08414035200812718, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 2, + "irrep": "a1", + "energy": -24.72, + "spin": null + }, + "virt_orb": { + "index": 2, + "irrep": "b1", + "energy": 3.09, + "spin": null + }, + "coeff": 92.0 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + -0.35571, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + 0.000818, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 1.036339, + "moment": [ + [ + 0.0, + 0.0, + -0.59833 + ], + [ + 0.0, + 0.0, + 0.0 + ], + [ + -0.59833, + 0.0, + 0.0 + ] + ] + } + } + ] + }, + { + "tot_en": -75.28797115415371, + "osc_stre": 0.2214315864696532, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b1", + "energy": -13.01, + "spin": null + }, + "virt_orb": { + "index": 5, + "irrep": "a1", + "energy": 17.22, + "spin": null + }, + "coeff": 90.4 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + -0.561089, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + -0.000368, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.373781, + "moment": [ + [ + 0.0, + 0.0, + -0.215802 + ], + [ + 0.0, + 0.0, + 0.0 + ], + [ + -0.215802, + 0.0, + 0.0 + ] + ] + } + } + ] + }, + { + "tot_en": -75.05974130599394, + "osc_stre": 0.1701379379535982, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 3, + "irrep": "a1", + "energy": -8.44, + "spin": null + }, + "virt_orb": { + "index": 4, + "irrep": "b1", + "energy": 27.75, + "spin": null + }, + "coeff": 78.9 + }, + { + "occ_orb": { + "index": 1, + "irrep": "b1", + "energy": -13.01, + "spin": null + }, + "virt_orb": { + "index": 6, + "irrep": "a1", + "energy": 23.83, + "spin": null + }, + "coeff": 21.0 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.445952, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + -0.00161, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 1.164301, + "moment": [ + [ + 0.0, + 0.0, + -0.67221 + ], + [ + 0.0, + 0.0, + 0.0 + ], + [ + -0.67221, + 0.0, + 0.0 + ] + ] + } + } + ] + }, + { + "tot_en": -75.00049027457096, + "osc_stre": 0.005612486793166832, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b1", + "energy": -13.01, + "spin": null + }, + "virt_orb": { + "index": 6, + "irrep": "a1", + "energy": 23.83, + "spin": null + }, + "coeff": 78.8 + }, + { + "occ_orb": { + "index": 3, + "irrep": "a1", + "energy": -8.44, + "spin": null + }, + "virt_orb": { + "index": 4, + "irrep": "b1", + "energy": 27.75, + "spin": null + }, + "coeff": 20.9 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + -0.079189, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + -0.000729, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.384568, + "moment": [ + [ + 0.0, + 0.0, + 0.22203 + ], + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.22203, + 0.0, + 0.0 + ] + ] + } + } + ] + }, + { + "tot_en": -74.92062784645103, + "osc_stre": 0.001383020408469612, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 2, + "irrep": "a1", + "energy": -24.72, + "spin": null + }, + "virt_orb": { + "index": 3, + "irrep": "b1", + "energy": 14.8, + "spin": null + }, + "coeff": 98.8 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + -0.03819, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + 0.000984, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 1.17932, + "moment": [ + [ + 0.0, + 0.0, + -0.680881 + ], + [ + 0.0, + 0.0, + 0.0 + ], + [ + -0.680881, + 0.0, + 0.0 + ] + ] + } + } + ] + }, + { + "tot_en": -74.79144022404836, + "osc_stre": 0.0311461276358944, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b1", + "energy": -13.01, + "spin": null + }, + "virt_orb": { + "index": 7, + "irrep": "a1", + "energy": 30.18, + "spin": null + }, + "coeff": 99.2 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + -0.173525, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + -0.000428, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.516707, + "moment": [ + [ + 0.0, + 0.0, + -0.298321 + ], + [ + 0.0, + 0.0, + 0.0 + ], + [ + -0.298321, + 0.0, + 0.0 + ] + ] + } + } + ] + }, + { + "tot_en": -74.44746414239671, + "osc_stre": 0.09313921044836769, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 2, + "irrep": "a1", + "energy": -24.72, + "spin": null + }, + "virt_orb": { + "index": 4, + "irrep": "b1", + "energy": 27.75, + "spin": null + }, + "coeff": 99.2 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + -0.271485, + 0.0, + 0.0 + ], + "magnetic_dipole": [ + 0.0, + 0.000977, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.656364, + "moment": [ + [ + 0.0, + 0.0, + 0.378952 + ], + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.378952, + 0.0, + 0.0 + ] + ] + } + } + ] + } + ], + "b2": [ + { + "tot_en": -76.08891309318071, + "osc_stre": 0.01444211774765394, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b2", + "energy": -6.4, + "spin": null + }, + "virt_orb": { + "index": 4, + "irrep": "a1", + "energy": 0.92, + "spin": null + }, + "coeff": 100.0 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.291988, + 0.0 + ], + "magnetic_dipole": [ + -0.000282, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.1709, + "moment": [ + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + -0.098669 + ], + [ + 0.0, + -0.098669, + 0.0 + ] + ] + } + } + ] + }, + { + "tot_en": -75.4998229128459, + "osc_stre": 0.1866850354372666, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b2", + "energy": -6.4, + "spin": null + }, + "virt_orb": { + "index": 5, + "irrep": "a1", + "energy": 17.22, + "spin": null + }, + "coeff": 99.8 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.576288, + 0.0 + ], + "magnetic_dipole": [ + 0.001725, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.451549, + "moment": [ + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + -0.260702 + ], + [ + 0.0, + -0.260702, + 0.0 + ] + ] + } + } + ] + }, + { + "tot_en": -75.28070931032175, + "osc_stre": 0.01184729127031465, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b2", + "energy": -6.4, + "spin": null + }, + "virt_orb": { + "index": 6, + "irrep": "a1", + "energy": 23.83, + "spin": null + }, + "coeff": 84.2 + }, + { + "occ_orb": { + "index": 3, + "irrep": "a1", + "energy": -8.44, + "spin": null + }, + "virt_orb": { + "index": 2, + "irrep": "b2", + "energy": 23.42, + "spin": null + }, + "coeff": 15.7 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + -0.12934, + 0.0 + ], + "magnetic_dipole": [ + -0.000399, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 1.470922, + "moment": [ + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.849237 + ], + [ + 0.0, + 0.849237, + 0.0 + ] + ] + } + } + ] + }, + { + "tot_en": -75.19063257920865, + "osc_stre": 1.706350575088063e-05, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 3, + "irrep": "a1", + "energy": -8.44, + "spin": null + }, + "virt_orb": { + "index": 2, + "irrep": "b2", + "energy": 23.42, + "spin": null + }, + "coeff": 84.2 + }, + { + "occ_orb": { + "index": 1, + "irrep": "b2", + "energy": -6.4, + "spin": null + }, + "virt_orb": { + "index": 6, + "irrep": "a1", + "energy": 23.83, + "spin": null + }, + "coeff": 15.7 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + -0.004713, + 0.0 + ], + "magnetic_dipole": [ + 0.000723, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.50837, + "moment": [ + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + -0.293507 + ], + [ + 0.0, + -0.293507, + 0.0 + ] + ] + } + } + ] + }, + { + "tot_en": -75.0478666594856, + "osc_stre": 0.52752901174764, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b2", + "energy": -6.4, + "spin": null + }, + "virt_orb": { + "index": 7, + "irrep": "a1", + "energy": 30.18, + "spin": null + }, + "coeff": 99.5 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + -0.781647, + 0.0 + ], + "magnetic_dipole": [ + -0.002174, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.520233, + "moment": [ + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.300356 + ], + [ + 0.0, + 0.300356, + 0.0 + ] + ] + } + } + ] + }, + { + "tot_en": -74.60446365779657, + "osc_stre": 0.07023608050783973, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 2, + "irrep": "a1", + "energy": -24.72, + "spin": null + }, + "virt_orb": { + "index": 2, + "irrep": "b2", + "energy": 23.42, + "spin": null + }, + "coeff": 99.4 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.246169, + 0.0 + ], + "magnetic_dipole": [ + 0.001221, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.063929, + "moment": [ + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + -0.036909 + ], + [ + 0.0, + -0.036909, + 0.0 + ] + ] + } + } + ] + }, + { + "tot_en": -73.68591641921864, + "osc_stre": 0.06977753602944474, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b2", + "energy": -6.4, + "spin": null + }, + "virt_orb": { + "index": 8, + "irrep": "a1", + "energy": 67.45, + "spin": null + }, + "coeff": 91.8 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.198472, + 0.0 + ], + "magnetic_dipole": [ + 0.00086, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.129434, + "moment": [ + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + -0.074729 + ], + [ + 0.0, + -0.074729, + 0.0 + ] + ] + } + } + ] + }, + { + "tot_en": -73.58415240678939, + "osc_stre": 1.098716013399029, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 3, + "irrep": "a1", + "energy": -8.44, + "spin": null + }, + "virt_orb": { + "index": 3, + "irrep": "b2", + "energy": 68.79, + "spin": null + }, + "coeff": 91.4 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.772901, + 0.0 + ], + "magnetic_dipole": [ + 0.003078, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 1.272895, + "moment": [ + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + -0.734906 + ], + [ + 0.0, + -0.734906, + 0.0 + ] + ] + } + } + ] + }, + { + "tot_en": -73.43561216778127, + "osc_stre": 0.3280400058904574, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b1", + "energy": -13.01, + "spin": null + }, + "virt_orb": { + "index": 1, + "irrep": "a2", + "energy": 67.9, + "spin": null + }, + "coeff": 95.3 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.411393, + 0.0 + ], + "magnetic_dipole": [ + 0.00117, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.340846, + "moment": [ + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + -0.196787 + ], + [ + 0.0, + -0.196787, + 0.0 + ] + ] + } + } + ] + }, + { + "tot_en": -73.33804858243694, + "osc_stre": 0.4465036699568586, + "rot_stre": 0.0, + "dominant_contributions": [ + { + "occ_orb": { + "index": 1, + "irrep": "b2", + "energy": -6.4, + "spin": null + }, + "virt_orb": { + "index": 9, + "irrep": "a1", + "energy": 77.83, + "spin": null + }, + "coeff": 97.4 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.0, + 0.472105, + 0.0 + ], + "magnetic_dipole": [ + 0.002567, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 0.0, + "anisotropy": 0.789818, + "moment": [ + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + -0.456002 + ], + [ + 0.0, + -0.456002, + 0.0 + ] + ] + } + } + ] + } + ] + }, + "rdgrad_memory": null, + "gradient": null, + "egrad_excited_state": null, + "statpt_info": null, + "relax_info": null, + "relax_gradient_values": null, + "relax_conv_info": null, + "aoforce_numerical_integration": null, + "aoforce_analysis": null, + "mp2_results": { + "energy": null + }, + "riper_scf_energies": null, + "periodicity_data": null +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/escf/no3_ridft_cosmo/escf.log b/turbomoleio/testfiles/outputs/TM_v7.6/escf/no3_ridft_cosmo/escf.log new file mode 100644 index 0000000..e3792c1 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/escf/no3_ridft_cosmo/escf.log @@ -0,0 +1,1347 @@ + + escf (frontal3) : TURBOMOLE rev. V7-6 19 Oct 2021 at 10:10:11 compiled Oct 19th 2021 + Copyright (C) 2021 TURBOMOLE GmbH, Karlsruhe + + + 2023-01-25 00:19:02.284 + + + + + e s c f + + TURBOMOLE GmbH + + + integral direct evaluation of + + * excitation energies and transition moments + * dynamic response properties + * stabilities + + + + references (see also programs dscf and ridft) + + implementation and benchmarks (review) + F. Furche and D. Rappoport, + "Density functional methods for excited states: + equilibrium structure and electronic spectra", + ch. III of "Computational Photochemistry", ed. by + M. Olivucci, vol. 16 of "Theoretical and Computational + Chemistry", Elsevier, Amsterdam, 2005. + + Bethe-Salpeter equation + K. Krause and W. Klopper, + J. Comput. Chem. 38 (2017) 383. + + 2c BSE, GW and hybrid TD-DFT + C. Holzer and W. Klopper + J. Chem. Phys. 150, 204116 (2019) + + nonorthonormal Krylov space methods + F. Furche, B. T. Krull, B. D. Nguyen, and J. Kwon, + J. Chem. Phys. 144 (2016), 174105. + + two-component GW quasi particle energies + M. Kuehn and F. Weigend, + J. Chem. Theory Comput. 11 (2015), 969. + + two-component TDDFT with spin-orbit coupling + M. Kuehn and F. Weigend, + J. Chem. Theory Comput. 9 (2013), 5341. + M. Kuehn and F. Weigend, + J. Chem. Phys. 142 (2015), 034116. + + GW quasi particle energies + M. J. van Setten, F. Weigend, and F. Evers, + J. Chem. Theory Comput. 9 (2013), 232. + + Fast GW methods: RIGW, contour deformation + J. Chem. Phys. 150, 204116 (2019) + + current-density dependent meta-GGA Linear Response + J. E. Bates and F. Furche, + J. Chem. Phys. 137 (2012), 164105. + + spin-flip method + M. Kuehn and F. Weigend, + Chem. Phys. Chem. 12 (2011), 3331. + + RI-J method + R. Bauernschmitt, M. Haeser, O. Treutler, and R. Ahlrichs, + Chem. Phys. Lett. 264 (1997), 573. + + density functional implementation + R. Bauernschmitt and R. Ahlrichs, + Chem. Phys. Lett. 256 (1996), 454. + R. Bauernschmitt and R. Ahlrichs, + J. Chem. Phys. 104 (1996), 9047. + + UHF extension (RPA and CIS) + C. Ochsenfeld, J. Gauss, and R. Ahlrichs, + J. Chem. Phys. 103 (1995), 7401. + + integral direct algorithm + H. Weiss, R. Ahlrichs, and M. Haeser, + J. Chem. Phys. 99 (1993), 1262. + + Seminumerical and pseudospectral algorithms + C. Holzer, J. Chem. Phys. 153 (2020), 184115. + + Two-component static/dynamic polarizabilities, + and relativistic damped-response approach, + polarizabilities and damped response at GW-BSE level + M. Kehry, Y. J. Franzke, C. Holzer, and W. Klopper, + Mol. Phys. 118 (2020), e1755064 + + Nuclear spin-spin coupling constants + F. Mack, C. J. Schattenberg, M. Kaupp, F. Weigend, + J. Phys. Chem. A 2020, 124, 41, 8529 + + + + + UHF mode switched on ! + + + +--------------------------------------------------+ + | Atomic coordinate, charge and isotop information | + +--------------------------------------------------+ + + atomic coordinates atom charge isotop + -1.15103064 -1.99364355 0.00000000 o 8.000 0 + 0.00000000 0.00000000 0.00000000 n 7.000 0 + -1.15103064 1.99364355 0.00000000 o 8.000 0 + 2.30206127 0.00000000 0.00000000 o 8.000 0 + + center of nuclear mass : 0.00000000 0.00000000 0.00000000 + center of nuclear charge: 0.00000000 0.00000000 0.00000000 + + ************************************************************************* + ridft_escf + ************************************************************************* + + + + +--------------------------------------------------+ + | basis set information | + +--------------------------------------------------+ + + we will work with the 1s 3p 5d 7f 9g ... basis set + ...i.e. with spherical basis functions... + + type atoms prim cont basis + --------------------------------------------------------------------------- + o 3 24 14 def-SV(P) [3s2p1d|7s4p1d] + n 1 24 14 def-SV(P) [3s2p1d|7s4p1d] + --------------------------------------------------------------------------- + total: 4 96 56 + --------------------------------------------------------------------------- + + total number of primitive shells : 24 + total number of contracted shells : 24 + total number of cartesian basis functions : 60 + total number of SCF-basis functions : 56 + + + residuum convergence criterium : 0.10E-04 + + COSMO is enabled, use tighter integral screening thresholds + 7 + + integral neglect threshold : 0.33E-12 + integral storage threshold THIZE : 0.10E-04 + integral storage threshold THIME : 5 + + + FOUND RI-J FLAG ! + + + AUXILIARY BASIS SET information: + + we will work with the 1s 3p 5d 7f 9g ... basis set + ...i.e. with spherical basis functions... + + type atoms prim cont basis + --------------------------------------------------------------------------- + o 3 39 37 def-SV(P) [6s3p3d1f|8s3p3d1f] + n 1 39 37 def-SV(P) [6s3p3d1f|8s3p3d1f] + --------------------------------------------------------------------------- + total: 4 156 148 + --------------------------------------------------------------------------- + + total number of primitive shells : 30 + total number of contracted shells : 52 + total number of cartesian basis functions : 172 + total number of SCF-basis functions : 148 + + RPA UHF-EXCITATION-CALCULATION (spin-conserved) + + FOUND DFT-FLAG ! + + + symmetry group of the molecule : c1 + + the group has the following generators : + c1(z) + + 1 symmetry operations found + + there are 1 real representations : a + + maximum number of shells which are related by symmetry : 1 + + IRREPs of excited states : a + + mo occupation : + irrep mo's occupied + a 56 16 + + number of basis functions : 56 + number of occupied orbitals : 16 + + ALPHA-Occupation: 16 + BETA-Occupation : 15 + COSMO: symmetry in response calc. w/out guarantee + ============================================================================== + COSMO switched on + ============================================================================== + COSMO stati: segments per atom: H 32 other atoms 92 + COSMO statistics: nps 240 npspher: 174 + COSMO surface: + number of segments: 240 + area (bohr**2): 267.911883 + volume (bohr**3): 374.012013 + COSMO: check number of disjunct cavities: + + ... OK contiguous cavity found + Using refractive index n = 1.30000000000000 + Screening function (n**2-1)/(n**2+0.5) = 0.315068493150685 + + ------------------ + density functional + ------------------ + B-P86 functional + exchange: LDA + Becke (B88) + correlation: LDA (VWN) + Perdew (P86) + + iterations will be done with small grid + + spherical integration : Lebedev's spherical grid + spherical gridsize : 3 + i.e. gridpoints : 302 + value for diffuse not defined + radial integration : Chebyshev 2nd kind (scaling 3) + radial gridsize : 3 + integration cells : 4 + partition function : becke + partition sharpness : 3 + + + ---------------------- + RI - INFORMATION + ---------------------- + + biggest AO integral is expected to be 4.776656448 + + Threshold for integral neglect (rithr2): 0.33E-12 + Threshold for integral neglect (rithr1): 0.33E-12 + + Contributions to RI integral batches: + neglected integral batches: 3 + direct contribution: 0 + memory contribution: 297 + Core memory available (ricore) 500 MiB + Core memory needed for (P|Q) and Cholesky 1 MiB + Core memory used for integrals 3 MiB + + **************************************** + Memory allocated for RIDFT 3 MiB + **************************************** + + MOs are in ASCII format ! + + + reading orbital data $uhfmo_alpha from file alpha + orbital characterization : scfconv=7 + + reading orbital data $uhfmo_beta from file beta + orbital characterization : scfconv=7 + preparing DFT numerical integration .... + Overall gridpoints after grid construction = 7274 + + Calculating ground state density on molecular grid + + Integral of ground state total density: Na = 31.00031443604871 + + Integral of ground state spin density: Nb = 1.000026296764440 + + + all orbitals will be included in the transformation + + number of non-frozen orbitals : 56 + number of non-frozen occupied orbitals : 16 + all orbitals will be included in the transformation + + number of non-frozen orbitals : 56 + number of non-frozen occupied orbitals : 15 + + dimension of super-tensorspace: 1 + + IRREP tensor space dimension number of roots + + a 1255 10 + + maximum number of Davidson iterations set to 35 + + + machine precision: 2.22D-16 + + + logfile unrs_a will be constructed + + + Nonorthonormal Krylov Space Iteration + + + total number of roots to be determined: 10 + + + maximum core memory set to 500 MB, + corresponding to 8747 vectors in CAO basis + + + maximum number of simultaneously treated vectors (including degeneracy): 18 + + + Iteration IRREP Converged Max. Euclidean + roots residual norm + + 1 a 0 7.883659515532002D-02 + + 2 a 0 2.178615279982761D-02 + + 3 a 0 3.048709095992678D-03 + + 4 a 1 5.923431214770775D-04 + + 5 a 5 1.460143461808554D-04 + + 6 a 9 2.590244602223270D-05 + + 7 a 10 9.666026785391291D-06 + + + converged! + + + Switching to fine grid + + preparing DFT numerical integration .... + Overall gridpoints after grid construction = 25272 + + Calculating ground state density on molecular grid + + Integral of ground state total density: Na = 30.99999497960500 + + Integral of ground state spin density: Nb = 1.000000046566693 + + + + Iteration IRREP Converged Max. Euclidean + roots residual norm + + 8 a 0 1.111836680211689D-04 + + + NOTE: Residual norms are larger than 1.00D-05 due to mgrid option! + + Eigenpairs written on logfile unrs_a + + + + IRREP Vector Eigenvalue Euclidean residual norm + + a 1 4.404678736480582D-03 2.600025682455084D-05 + 2 4.405956467254631D-03 2.691682032419016D-05 + 3 9.537025330603622D-03 6.623579272014085D-05 + 4 9.538097754898667D-03 7.869282285924706D-05 + 5 3.472725877751889D-02 3.615431700966352D-05 + 6 3.649860120850448D-02 1.111836680211689D-04 + 7 3.650044715823448D-02 9.795608322480321D-05 + 8 4.951021926165934D-02 4.116895735229065D-05 + 9 4.951710495167214D-02 4.923040673325581D-05 + 10 6.653853213727975D-02 3.749479763378315D-05 + + + + + + + Selection rules for point group c1 + + + Subduction with respect to c1 : + + Polar vector representation: a + + Axial vector representation: a + + Symmetric second rank tensor representation: a + + + + + Ground state + + + Total energy: -280.0695809101000 + + Charge: + + elec nuc total + + -31.000000 31.000000 -0.000000 + + + Electric dipole moment: + + elec nuc total + + x 0.000456 0.000000 0.000456 Norm: 0.000461 + y 0.000059 0.000000 0.000059 + z -0.000025 0.000000 -0.000025 Norm / debye: 0.001171 + + + Electric quadrupole moment: + + elec nuc total + + xx -80.296747 63.593833 -16.702914 + yy -80.297434 63.593833 -16.703601 1/3*trace: -15.961806 + zz -14.478903 0.000000 -14.478903 + xy 0.000015 0.000000 0.000015 + xz -0.000001 0.000000 -0.000001 Anisotropy: 2.224354 + yz -0.000022 0.000000 -0.000022 + + + + ============================================================================== + + I R R E P a + + ============================================================================== + + + Excitation is electric dipole allowed + + Excitation is magnetic dipole allowed + + Excitation is electric quadrupole allowed + + + + + 1 a excitation + + + Total energy: -280.0032131563601 + + Excitation energy: 0.6636775373990431E-01 + + Excitation energy / eV: 1.805959239929535 + + Excitation energy / nm: 686.5284734294775 + + Excitation energy / cm^(-1): 14566.03824245404 + + + Oscillator strength: + + velocity representation: 0.1783312568027102E-09 + + length representation: 0.3719565467446828E-09 + + mixed representation: 0.2564349468506299E-09 + + + Rotatory strength: + + velocity representation: -0.1465175492275226E-06 + + velocity rep. / 10^(-40)erg*cm^3: -0.9465739368137792E-02 + + length representation: -0.2148551926178635E-06 + + length rep. / 10^(-40)erg*cm^3: -0.1388068027300655E-01 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 15 a beta -8.83 16 a beta -6.90 98.4 + + = 0.0019384779 + = 0.9980615221 + = -0.0007884730 + + 1/2 = 0.4992115270 + 1/2 = 0.5007884730 + + = 1.0000000000 + + + Change of electron number: + + -0.000000 + + + Electric transition dipole moment (velocity rep.): + + x 0.000060 Norm: 0.000063 + y -0.000019 + z -0.000005 Norm / debye: 0.000161 + + + Electric transition dipole moment (length rep.): + + x 0.000089 Norm: 0.000092 + y -0.000020 + z -0.000003 Norm / debye: 0.000233 + + + Magnetic transition dipole moment / i: + + x -0.002347 Norm: 0.002360 + y 0.000244 + z 0.000000 Norm / Bohr mag.: 0.646737 + + + Electric quadrupole transition moment: + + xx 0.000104 + yy -0.000096 1/3*trace: 0.000001 + zz -0.000005 + xy 0.000016 + xz 0.021883 Anisotropy: 0.366824 + yz 0.210652 + + + + + 2 a excitation + + + Total energy: -280.0032035309166 + + Excitation energy: 0.6637737918338318E-01 + + Excitation energy / eV: 1.806221161685351 + + Excitation energy / nm: 686.4289193178369 + + Excitation energy / cm^(-1): 14568.15078310689 + + + Oscillator strength: + + velocity representation: 0.1459431336082982E-08 + + length representation: 0.4241929354639340E-09 + + mixed representation: 0.1164606480597624E-09 + + + Rotatory strength: + + velocity representation: -0.1623956836572353E-06 + + velocity rep. / 10^(-40)erg*cm^3: -0.1049154332784314E-01 + + length representation: -0.2239185648833963E-06 + + length rep. / 10^(-40)erg*cm^3: -0.1446621777424280E-01 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 14 a beta -8.83 16 a beta -6.90 98.4 + + = 0.0019367111 + = 0.9980632889 + = -0.0007880810 + + 1/2 = 0.4992119190 + 1/2 = 0.5007880810 + + = 1.0000000000 + + + Change of electron number: + + 0.000000 + + + Electric transition dipole moment (velocity rep.): + + x -0.000009 Norm: 0.000182 + y -0.000068 + z 0.000168 Norm / debye: 0.000462 + + + Electric transition dipole moment (length rep.): + + x -0.000003 Norm: 0.000098 + y -0.000095 + z -0.000023 Norm / debye: 0.000249 + + + Magnetic transition dipole moment / i: + + x 0.000244 Norm: 0.002359 + y 0.002346 + z -0.000000 Norm / Bohr mag.: 0.646552 + + + Electric quadrupole transition moment: + + xx 0.000003 + yy 0.000004 1/3*trace: 0.000001 + zz -0.000004 + xy 0.000121 + xz 0.210642 Anisotropy: 0.366808 + yz -0.021891 + + + + + 3 a excitation + + + Total energy: -279.9719232154180 + + Excitation energy: 0.9765769468200457E-01 + + Excitation energy / eV: 2.657402219040928 + + Excitation energy / nm: 466.5618291355794 + + Excitation energy / cm^(-1): 21433.38647534631 + + + Oscillator strength: + + velocity representation: 0.8134625006937733E-02 + + length representation: 0.1213515055616938E-01 + + mixed representation: 0.9935537172876817E-02 + + + Rotatory strength: + + velocity representation: 0.1384973867718711E-06 + + velocity rep. / 10^(-40)erg*cm^3: 0.8947598245142126E-02 + + length representation: 0.1691598833380001E-06 + + length rep. / 10^(-40)erg*cm^3: 0.1092854320635417E-01 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 13 a beta -9.11 16 a beta -6.90 92.8 + + = 0.0331078774 + = 0.9668921226 + = 0.0234690349 + + 1/2 = 0.5234690349 + 1/2 = 0.4765309651 + + = 1.0000000000 + + + Change of electron number: + + 0.000000 + + + Electric transition dipole moment (velocity rep.): + + x 0.344088 Norm: 0.353477 + y -0.080927 + z -0.000004 Norm / debye: 0.898456 + + + Electric transition dipole moment (length rep.): + + x 0.420261 Norm: 0.431733 + y -0.098865 + z -0.000003 Norm / debye: 1.097363 + + + Magnetic transition dipole moment / i: + + x 0.000000 Norm: 0.000000 + y -0.000000 + z 0.000000 Norm / Bohr mag.: 0.000109 + + + Electric quadrupole transition moment: + + xx 0.628228 + yy -0.628189 1/3*trace: 0.000007 + zz -0.000016 + xy 0.147829 + xz -0.000017 Anisotropy: 1.117809 + yz -0.000052 + + + + + 4 a excitation + + + Total energy: -279.9719177248412 + + Excitation energy: 0.9766318525882037E-01 + + Excitation energy / eV: 2.657551625301865 + + Excitation energy / nm: 466.5355992562713 + + Excitation energy / cm^(-1): 21434.59151766529 + + + Oscillator strength: + + velocity representation: 0.8122287060544180E-02 + + length representation: 0.1212432500695806E-01 + + mixed representation: 0.9923570311571818E-02 + + + Rotatory strength: + + velocity representation: 0.1476302374185368E-06 + + velocity rep. / 10^(-40)erg*cm^3: 0.9537624384435667E-02 + + length representation: 0.1803709060411251E-06 + + length rep. / 10^(-40)erg*cm^3: 0.1165282926981586E-01 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 12 a beta -9.11 16 a beta -6.90 92.8 + + = 0.0331009221 + = 0.9668990779 + = 0.0234547942 + + 1/2 = 0.5234547942 + 1/2 = 0.4765452058 + + = 1.0000000000 + + + Change of electron number: + + 0.000000 + + + Electric transition dipole moment (velocity rep.): + + x -0.080982 Norm: 0.353199 + y -0.343790 + z -0.000001 Norm / debye: 0.897749 + + + Electric transition dipole moment (length rep.): + + x -0.098915 Norm: 0.431528 + y -0.420038 + z -0.000003 Norm / debye: 1.096843 + + + Magnetic transition dipole moment / i: + + x -0.000000 Norm: 0.000000 + y -0.000000 + z 0.000000 Norm / Bohr mag.: 0.000136 + + + Electric quadrupole transition moment: + + xx -0.147860 + yy 0.147859 1/3*trace: 0.000001 + zz 0.000005 + xy 0.628187 + xz -0.000042 Anisotropy: 1.117786 + yz 0.000008 + + + + + 5 a excitation + + + Total energy: -279.8832283979690 + + Excitation energy: 0.1863525121309581 + + Excitation energy / eV: 5.070912034870232 + + Excitation energy / nm: 244.5008770688352 + + Excitation energy / cm^(-1): 40899.64877995930 + + + Oscillator strength: + + velocity representation: 0.1444787335222054E-11 + + length representation: 0.1432831275341385E-11 + + mixed representation: 0.8535093097959455E-12 + + + Rotatory strength: + + velocity representation: -0.3857531768224608E-12 + + velocity rep. / 10^(-40)erg*cm^3: -0.2492151316674277E-07 + + length representation: -0.4774971882692591E-12 + + length rep. / 10^(-40)erg*cm^3: -0.3084861818263608E-07 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 16 a alpha -8.17 17 a alpha -3.04 99.7 + + = 0.9972255905 + = 0.0027744095 + = 0.0006311074 + + 1/2 = 0.5006311074 + 1/2 = 0.4993688926 + + = 1.0000000000 + + + Change of electron number: + + -0.000000 + + + Electric transition dipole moment (velocity rep.): + + x -0.000002 Norm: 0.000003 + y -0.000002 + z 0.000002 Norm / debye: 0.000009 + + + Electric transition dipole moment (length rep.): + + x -0.000003 Norm: 0.000003 + y -0.000001 + z -0.000001 Norm / debye: 0.000009 + + + Magnetic transition dipole moment / i: + + x 0.000000 Norm: 0.000000 + y 0.000000 + z 0.000000 Norm / Bohr mag.: 0.000040 + + + Electric quadrupole transition moment: + + xx -0.000000 + yy -0.000006 1/3*trace: -0.000005 + zz -0.000010 + xy -0.000005 + xz -0.000013 Anisotropy: 0.000059 + yz 0.000031 + + + + + 6 a excitation + + + Total energy: -279.8785348391943 + + Excitation energy: 0.1910460709056967 + + Excitation energy / eV: 5.198630322136823 + + Excitation energy / nm: 238.4940577107748 + + Excitation energy / cm^(-1): 41929.76585871379 + + + Oscillator strength: + + velocity representation: 0.9739034102092466E-04 + + length representation: 0.1027026101658901E-03 + + mixed representation: 0.1000112060488071E-03 + + + Rotatory strength: + + velocity representation: 0.6602204130922899E-08 + + velocity rep. / 10^(-40)erg*cm^3: 0.4265341857548592E-03 + + length representation: 0.6779938106634969E-08 + + length rep. / 10^(-40)erg*cm^3: 0.4380166566248904E-03 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 15 a alpha -9.08 17 a alpha -3.04 46.2 + 14 a beta -8.83 17 a beta -2.91 39.9 + 15 a beta -8.83 17 a beta -2.91 12.9 + + = 0.4706720741 + = 0.5293279259 + = -0.4985094757 + + 1/2 = 0.0014905243 + 1/2 = 0.9985094757 + + = 1.0000000000 + + + Change of electron number: + + 0.000000 + + + Electric transition dipole moment (velocity rep.): + + x 0.008083 Norm: 0.027653 + y -0.026445 + z -0.000000 Norm / debye: 0.070286 + + + Electric transition dipole moment (length rep.): + + x 0.008308 Norm: 0.028397 + y -0.027154 + z -0.000000 Norm / debye: 0.072178 + + + Magnetic transition dipole moment / i: + + x 0.000000 Norm: 0.000000 + y -0.000000 + z -0.000000 Norm / Bohr mag.: 0.000066 + + + Electric quadrupole transition moment: + + xx 0.004742 + yy -0.004736 1/3*trace: 0.000002 + zz 0.000001 + xy 0.015400 + xz 0.000022 Anisotropy: 0.027907 + yz 0.000007 + + + + + 7 a excitation + + + Total energy: -279.8785300080916 + + Excitation energy: 0.1910509020084294 + + Excitation energy / eV: 5.198761783187220 + + Excitation energy / nm: 238.4880269133181 + + Excitation energy / cm^(-1): 41930.82616320193 + + + Oscillator strength: + + velocity representation: 0.9773167850752149E-04 + + length representation: 0.1032848671235739E-03 + + mixed representation: 0.1004699085004897E-03 + + + Rotatory strength: + + velocity representation: 0.5277548592367868E-08 + + velocity rep. / 10^(-40)erg*cm^3: 0.3409550578849892E-03 + + length representation: 0.5425456433189068E-08 + + length rep. / 10^(-40)erg*cm^3: 0.3505106167862877E-03 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 14 a alpha -9.08 17 a alpha -3.04 46.2 + 15 a beta -8.83 17 a beta -2.91 39.9 + 14 a beta -8.83 17 a beta -2.91 12.9 + + = 0.4706500437 + = 0.5293499563 + = -0.4985090653 + + 1/2 = 0.0014909347 + 1/2 = 0.9985090653 + + = 1.0000000000 + + + Change of electron number: + + 0.000000 + + + Electric transition dipole moment (velocity rep.): + + x 0.026500 Norm: 0.027701 + y 0.008067 + z -0.000000 Norm / debye: 0.070408 + + + Electric transition dipole moment (length rep.): + + x 0.027245 Norm: 0.028477 + y 0.008285 + z -0.000000 Norm / debye: 0.072381 + + + Magnetic transition dipole moment / i: + + x 0.000000 Norm: 0.000000 + y 0.000000 + z 0.000000 Norm / Bohr mag.: 0.000052 + + + Electric quadrupole transition moment: + + xx 0.015550 + yy -0.015538 1/3*trace: 0.000004 + zz 0.000001 + xy -0.004701 + xz -0.000006 Anisotropy: 0.028127 + yz 0.000018 + + + + + 8 a excitation + + + Total energy: -279.8470719905897 + + Excitation energy: 0.2225089195103409 + + Excitation energy / eV: 6.054778360154527 + + Excitation energy / nm: 204.7709042867492 + + Excitation energy / cm^(-1): 48835.06293698808 + + + Oscillator strength: + + velocity representation: 0.1577909312158840E-09 + + length representation: 0.1201117362086292E-09 + + mixed representation: 0.1371797128586697E-09 + + + Rotatory strength: + + velocity representation: 0.7074605216073807E-07 + + velocity rep. / 10^(-40)erg*cm^3: 0.4570535711311469E-02 + + length representation: 0.6172453712726647E-07 + + length rep. / 10^(-40)erg*cm^3: 0.3987702388867812E-02 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 13 a beta -9.11 17 a beta -2.91 93.7 + + = 0.0616548385 + = 0.9383451615 + = -0.2390648714 + + 1/2 = 0.2609351286 + 1/2 = 0.7390648714 + + = 1.0000000000 + + + Change of electron number: + + 0.000000 + + + Electric transition dipole moment (velocity rep.): + + x -0.000032 Norm: 0.000033 + y 0.000008 + z -0.000003 Norm / debye: 0.000083 + + + Electric transition dipole moment (length rep.): + + x -0.000028 Norm: 0.000028 + y 0.000007 + z 0.000000 Norm / debye: 0.000072 + + + Magnetic transition dipole moment / i: + + x -0.002194 Norm: 0.002201 + y 0.000184 + z 0.000000 Norm / Bohr mag.: 0.603359 + + + Electric quadrupole transition moment: + + xx -0.000045 + yy 0.000045 1/3*trace: -0.000000 + zz -0.000001 + xy -0.000004 + xz -0.018976 Anisotropy: 0.393491 + yz -0.226388 + + + + + 9 a excitation + + + Total energy: -279.8470565182872 + + Excitation energy: 0.2225243918128351 + + Excitation energy / eV: 6.055199383107359 + + Excitation energy / nm: 204.7566663987257 + + Excitation energy / cm^(-1): 48838.45871486408 + + + Oscillator strength: + + velocity representation: 0.3967989346121699E-09 + + length representation: 0.1653587585761768E-09 + + mixed representation: 0.2336045924180265E-09 + + + Rotatory strength: + + velocity representation: 0.7763391276571961E-07 + + velocity rep. / 10^(-40)erg*cm^3: 0.5015524681128144E-02 + + length representation: 0.6773590398298486E-07 + + length rep. / 10^(-40)erg*cm^3: 0.4376065640932115E-02 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 12 a beta -9.11 17 a beta -2.91 93.7 + + = 0.0616882338 + = 0.9383117662 + = -0.2391272097 + + 1/2 = 0.2608727903 + 1/2 = 0.7391272097 + + = 1.0000000000 + + + Change of electron number: + + -0.000000 + + + Electric transition dipole moment (velocity rep.): + + x -0.000003 Norm: 0.000052 + y -0.000035 + z -0.000038 Norm / debye: 0.000131 + + + Electric transition dipole moment (length rep.): + + x -0.000002 Norm: 0.000033 + y -0.000031 + z -0.000013 Norm / debye: 0.000085 + + + Magnetic transition dipole moment / i: + + x -0.000184 Norm: 0.002201 + y -0.002194 + z -0.000000 Norm / Bohr mag.: 0.603306 + + + Electric quadrupole transition moment: + + xx -0.000001 + yy -0.000000 1/3*trace: -0.000001 + zz -0.000001 + xy 0.000061 + xz 0.226404 Anisotropy: 0.393520 + yz -0.018993 + + + + + 10 a excitation + + + Total energy: -279.8116302711450 + + Excitation energy: 0.2579506389549748 + + Excitation energy / eV: 7.019197028908454 + + Excitation energy / nm: 176.6359364124431 + + Excitation energy / cm^(-1): 56613.62122347212 + + + Oscillator strength: + + velocity representation: 0.1427839004851784E-08 + + length representation: 0.1847569671416052E-08 + + mixed representation: 0.1606922315300489E-08 + + + Rotatory strength: + + velocity representation: 0.3119648069210263E-06 + + velocity rep. / 10^(-40)erg*cm^3: 0.2015442907634413E-01 + + length representation: 0.3638879465011652E-06 + + length rep. / 10^(-40)erg*cm^3: 0.2350891397615510E-01 + + + Dominant contributions: + + occ. orbital energy / eV virt. orbital energy / eV |coeff.|^2*100 + 13 a alpha -10.06 17 a alpha -3.04 57.7 + 12 a alpha -10.06 17 a alpha -3.04 35.9 + + = 0.9361096979 + = 0.0638903021 + = 0.2391425575 + + 1/2 = 0.7391425575 + 1/2 = 0.2608574425 + + = 1.0000000000 + + + Change of electron number: + + -0.000000 + + + Electric transition dipole moment (velocity rep.): + + x 0.000077 Norm: 0.000091 + y -0.000044 + z -0.000021 Norm / debye: 0.000232 + + + Electric transition dipole moment (length rep.): + + x 0.000090 Norm: 0.000104 + y -0.000050 + z -0.000009 Norm / debye: 0.000263 + + + Magnetic transition dipole moment / i: + + x 0.003244 Norm: 0.003540 + y -0.001418 + z -0.000000 Norm / Bohr mag.: 0.970278 + + + Electric quadrupole transition moment: + + xx 0.000313 + yy -0.000315 1/3*trace: -0.000001 + zz -0.000002 + xy 0.000160 + xz 0.166717 Anisotropy: 0.721024 + yz 0.381441 + + SUMMARY OF EXCITATION ENERGIES AND DIPOLE OSCILLATOR STRENGTHS (velocity/length): + + ----------------------------------------------------------------------------------------------- + | Exc. | energy (Eh) | energy (eV) | energy (cm-1) | energy (nm) | Osc.(vel) | Osc.(len) | + ----------------------------------------------------------------------------------------------- + | 1 a | 0.066368 | 1.80596 | 14566.038 | 686.528 | 0.00000 | 0.00000 | + | 2 a | 0.066377 | 1.80622 | 14568.151 | 686.429 | 0.00000 | 0.00000 | + | 3 a | 0.097658 | 2.65740 | 21433.386 | 466.562 | 0.00813 | 0.01214 | + | 4 a | 0.097663 | 2.65755 | 21434.592 | 466.536 | 0.00812 | 0.01212 | + | 5 a | 0.186353 | 5.07091 | 40899.649 | 244.501 | 0.00000 | 0.00000 | + | 6 a | 0.191046 | 5.19863 | 41929.766 | 238.494 | 0.00010 | 0.00010 | + | 7 a | 0.191051 | 5.19876 | 41930.826 | 238.488 | 0.00010 | 0.00010 | + | 8 a | 0.222509 | 6.05478 | 48835.063 | 204.771 | 0.00000 | 0.00000 | + | 9 a | 0.222524 | 6.05520 | 48838.459 | 204.757 | 0.00000 | 0.00000 | + | 10 a | 0.257951 | 7.01919 | 56613.621 | 176.636 | 0.00000 | 0.00000 | + ----------------------------------------------------------------------------------------------- + + + + + ------------------------------------------------------------------------ + total cpu-time : 2.11 seconds + total wall-time : 3.74 seconds + ------------------------------------------------------------------------ + + **** escf : all done **** + + + 2023-01-25 00:19:05.973 + diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/escf/no3_ridft_cosmo/ref_escf_output.json b/turbomoleio/testfiles/outputs/TM_v7.6/escf/no3_ridft_cosmo/ref_escf_output.json new file mode 100644 index 0000000..cfaebd5 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/escf/no3_ridft_cosmo/ref_escf_output.json @@ -0,0 +1,788 @@ +{ + "@module": "turbomoleio.output.files", + "@class": "EscfOnlyOutput", + "@version": "1.3.0", + "escf": { + "@module": "turbomoleio.output.data", + "@class": "EscfData", + "@version": "1.3.0", + "calc_type": "RPA UHF-EXCITATION", + "iterations": { + "@module": "turbomoleio.output.data", + "@class": "EscfIterationData", + "@version": "1.3.0", + "steps": [ + [ + [ + "a", + 0, + 0.07883659515532002 + ] + ], + [ + [ + "a", + 0, + 0.02178615279982761 + ] + ], + [ + [ + "a", + 0, + 0.003048709095992678 + ] + ], + [ + [ + "a", + 1, + 0.0005923431214770775 + ] + ], + [ + [ + "a", + 5, + 0.0001460143461808554 + ] + ], + [ + [ + "a", + 9, + 2.59024460222327e-05 + ] + ], + [ + [ + "a", + 10, + 9.666026785391291e-06 + ] + ] + ], + "converged": true + }, + "residuum_convergence_criterium": 1e-05, + "n_occupied_orbitals": 16, + "orbital_characterization": "scfconv=7", + "max_davidson_iter": 35, + "machine_precision": 2.22e-16, + "max_core_mem": 500.0, + "max_cao_basis_vectors": 8747, + "max_treated_vectors": 18, + "irrep_data": { + "a": { + "tensor_space_dim": 1255, + "n_roots": 10 + } + }, + "gs_tot_en": -280.0695809101, + "excitations": { + "a": [ + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -280.0032131563601, + "osc_stre": 3.719565467446828e-10, + "rot_stre": -2.148551926178635e-07, + "dominant_contributions": [ + { + "occ_orb": { + "index": 15, + "irrep": "a", + "energy": -8.83, + "spin": "beta" + }, + "virt_orb": { + "index": 16, + "irrep": "a", + "energy": -6.9, + "spin": "beta" + }, + "coeff": 98.4 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 8.9e-05, + -2e-05, + -3e-06 + ], + "magnetic_dipole": [ + -0.002347, + 0.000244, + 0.0 + ], + "electric_quadrupole": { + "trace": 3e-06, + "anisotropy": 0.366824, + "moment": [ + [ + 0.000104, + 1.6e-05, + 0.021883 + ], + [ + 1.6e-05, + -9.6e-05, + 0.210652 + ], + [ + 0.021883, + 0.210652, + -5e-06 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -280.0032035309166, + "osc_stre": 4.24192935463934e-10, + "rot_stre": -2.239185648833963e-07, + "dominant_contributions": [ + { + "occ_orb": { + "index": 14, + "irrep": "a", + "energy": -8.83, + "spin": "beta" + }, + "virt_orb": { + "index": 16, + "irrep": "a", + "energy": -6.9, + "spin": "beta" + }, + "coeff": 98.4 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + -3e-06, + -9.5e-05, + -2.3e-05 + ], + "magnetic_dipole": [ + 0.000244, + 0.002346, + -0.0 + ], + "electric_quadrupole": { + "trace": 3e-06, + "anisotropy": 0.366808, + "moment": [ + [ + 3e-06, + 0.000121, + 0.210642 + ], + [ + 0.000121, + 4e-06, + -0.021891 + ], + [ + 0.210642, + -0.021891, + -4e-06 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -279.971923215418, + "osc_stre": 0.01213515055616938, + "rot_stre": 1.691598833380001e-07, + "dominant_contributions": [ + { + "occ_orb": { + "index": 13, + "irrep": "a", + "energy": -9.11, + "spin": "beta" + }, + "virt_orb": { + "index": 16, + "irrep": "a", + "energy": -6.9, + "spin": "beta" + }, + "coeff": 92.8 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.420261, + -0.098865, + -3e-06 + ], + "magnetic_dipole": [ + 0.0, + -0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 2.1e-05, + "anisotropy": 1.117809, + "moment": [ + [ + 0.628228, + 0.147829, + -1.7e-05 + ], + [ + 0.147829, + -0.628189, + -5.2e-05 + ], + [ + -1.7e-05, + -5.2e-05, + -1.6e-05 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -279.9719177248412, + "osc_stre": 0.01212432500695806, + "rot_stre": 1.803709060411251e-07, + "dominant_contributions": [ + { + "occ_orb": { + "index": 12, + "irrep": "a", + "energy": -9.11, + "spin": "beta" + }, + "virt_orb": { + "index": 16, + "irrep": "a", + "energy": -6.9, + "spin": "beta" + }, + "coeff": 92.8 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + -0.098915, + -0.420038, + -3e-06 + ], + "magnetic_dipole": [ + -0.0, + -0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 3e-06, + "anisotropy": 1.117786, + "moment": [ + [ + -0.14786, + 0.628187, + -4.2e-05 + ], + [ + 0.628187, + 0.147859, + 8e-06 + ], + [ + -4.2e-05, + 8e-06, + 5e-06 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -279.883228397969, + "osc_stre": 1.432831275341385e-12, + "rot_stre": -4.774971882692591e-13, + "dominant_contributions": [ + { + "occ_orb": { + "index": 16, + "irrep": "a", + "energy": -8.17, + "spin": "alpha" + }, + "virt_orb": { + "index": 17, + "irrep": "a", + "energy": -3.04, + "spin": "alpha" + }, + "coeff": 99.7 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + -3e-06, + -1e-06, + -1e-06 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": -1.5000000000000002e-05, + "anisotropy": 5.9e-05, + "moment": [ + [ + -0.0, + -5e-06, + -1.3e-05 + ], + [ + -5e-06, + -6e-06, + 3.1e-05 + ], + [ + -1.3e-05, + 3.1e-05, + -1e-05 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -279.8785348391943, + "osc_stre": 0.0001027026101658901, + "rot_stre": 6.779938106634969e-09, + "dominant_contributions": [ + { + "occ_orb": { + "index": 15, + "irrep": "a", + "energy": -9.08, + "spin": "alpha" + }, + "virt_orb": { + "index": 17, + "irrep": "a", + "energy": -3.04, + "spin": "alpha" + }, + "coeff": 46.2 + }, + { + "occ_orb": { + "index": 14, + "irrep": "a", + "energy": -8.83, + "spin": "beta" + }, + "virt_orb": { + "index": 17, + "irrep": "a", + "energy": -2.91, + "spin": "beta" + }, + "coeff": 39.9 + }, + { + "occ_orb": { + "index": 15, + "irrep": "a", + "energy": -8.83, + "spin": "beta" + }, + "virt_orb": { + "index": 17, + "irrep": "a", + "energy": -2.91, + "spin": "beta" + }, + "coeff": 12.9 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.008308, + -0.027154, + -0.0 + ], + "magnetic_dipole": [ + 0.0, + -0.0, + -0.0 + ], + "electric_quadrupole": { + "trace": 6e-06, + "anisotropy": 0.027907, + "moment": [ + [ + 0.004742, + 0.0154, + 2.2e-05 + ], + [ + 0.0154, + -0.004736, + 7e-06 + ], + [ + 2.2e-05, + 7e-06, + 1e-06 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -279.8785300080916, + "osc_stre": 0.0001032848671235739, + "rot_stre": 5.425456433189068e-09, + "dominant_contributions": [ + { + "occ_orb": { + "index": 14, + "irrep": "a", + "energy": -9.08, + "spin": "alpha" + }, + "virt_orb": { + "index": 17, + "irrep": "a", + "energy": -3.04, + "spin": "alpha" + }, + "coeff": 46.2 + }, + { + "occ_orb": { + "index": 15, + "irrep": "a", + "energy": -8.83, + "spin": "beta" + }, + "virt_orb": { + "index": 17, + "irrep": "a", + "energy": -2.91, + "spin": "beta" + }, + "coeff": 39.9 + }, + { + "occ_orb": { + "index": 14, + "irrep": "a", + "energy": -8.83, + "spin": "beta" + }, + "virt_orb": { + "index": 17, + "irrep": "a", + "energy": -2.91, + "spin": "beta" + }, + "coeff": 12.9 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.027245, + 0.008285, + -0.0 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 1.2e-05, + "anisotropy": 0.028127, + "moment": [ + [ + 0.01555, + -0.004701, + -6e-06 + ], + [ + -0.004701, + -0.015538, + 1.8e-05 + ], + [ + -6e-06, + 1.8e-05, + 1e-06 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -279.8470719905897, + "osc_stre": 1.201117362086292e-10, + "rot_stre": 6.172453712726647e-08, + "dominant_contributions": [ + { + "occ_orb": { + "index": 13, + "irrep": "a", + "energy": -9.11, + "spin": "beta" + }, + "virt_orb": { + "index": 17, + "irrep": "a", + "energy": -2.91, + "spin": "beta" + }, + "coeff": 93.7 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + -2.8e-05, + 7e-06, + 0.0 + ], + "magnetic_dipole": [ + -0.002194, + 0.000184, + 0.0 + ], + "electric_quadrupole": { + "trace": -0.0, + "anisotropy": 0.393491, + "moment": [ + [ + -4.5e-05, + -4e-06, + -0.018976 + ], + [ + -4e-06, + 4.5e-05, + -0.226388 + ], + [ + -0.018976, + -0.226388, + -1e-06 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -279.8470565182872, + "osc_stre": 1.653587585761768e-10, + "rot_stre": 6.773590398298486e-08, + "dominant_contributions": [ + { + "occ_orb": { + "index": 12, + "irrep": "a", + "energy": -9.11, + "spin": "beta" + }, + "virt_orb": { + "index": 17, + "irrep": "a", + "energy": -2.91, + "spin": "beta" + }, + "coeff": 93.7 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + -2e-06, + -3.1e-05, + -1.3e-05 + ], + "magnetic_dipole": [ + -0.000184, + -0.002194, + -0.0 + ], + "electric_quadrupole": { + "trace": -3e-06, + "anisotropy": 0.39352, + "moment": [ + [ + -1e-06, + 6.1e-05, + 0.226404 + ], + [ + 6.1e-05, + -0.0, + -0.018993 + ], + [ + 0.226404, + -0.018993, + -1e-06 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -279.811630271145, + "osc_stre": 1.847569671416052e-09, + "rot_stre": 3.638879465011652e-07, + "dominant_contributions": [ + { + "occ_orb": { + "index": 13, + "irrep": "a", + "energy": -10.06, + "spin": "alpha" + }, + "virt_orb": { + "index": 17, + "irrep": "a", + "energy": -3.04, + "spin": "alpha" + }, + "coeff": 57.7 + }, + { + "occ_orb": { + "index": 12, + "irrep": "a", + "energy": -10.06, + "spin": "alpha" + }, + "virt_orb": { + "index": 17, + "irrep": "a", + "energy": -3.04, + "spin": "alpha" + }, + "coeff": 35.9 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 9e-05, + -5e-05, + -9e-06 + ], + "magnetic_dipole": [ + 0.003244, + -0.001418, + -0.0 + ], + "electric_quadrupole": { + "trace": -3e-06, + "anisotropy": 0.721024, + "moment": [ + [ + 0.000313, + 0.00016, + 0.166717 + ], + [ + 0.00016, + -0.000315, + 0.381441 + ], + [ + 0.166717, + 0.381441, + -2e-06 + ] + ] + } + } + ] + } + ] + } + }, + "run": { + "@module": "turbomoleio.output.data", + "@class": "RunData", + "@version": "1.3.0", + "host": "frontal3", + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:19:02.284000" + }, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:19:05.973000" + }, + "cpu_time": 2.11, + "wall_time": 3.74 + }, + "tm": { + "@module": "turbomoleio.output.data", + "@class": "TurbomoleData", + "@version": "1.3.0", + "version": "7.6", + "build": null, + "executable": "escf" + } +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/escf/no3_ridft_cosmo/ref_output.json b/turbomoleio/testfiles/outputs/TM_v7.6/escf/no3_ridft_cosmo/ref_output.json new file mode 100644 index 0000000..2c463e6 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/escf/no3_ridft_cosmo/ref_output.json @@ -0,0 +1,940 @@ +{ + "@module": "turbomoleio.output.files", + "@class": "EscfOutput", + "@version": "1.3.0", + "dft": { + "@module": "turbomoleio.output.data", + "@class": "DFTData", + "@version": "1.3.0", + "functional": { + "@module": "turbomoleio.output.data", + "@class": "FunctionalData", + "@version": "1.3.0", + "msg": "B-P86 functional\n exchange: LDA + Becke (B88)\n correlation: LDA (VWN) + Perdew (P86)", + "name": "b-p", + "func_type": "GGA", + "xcfun": null + }, + "ri": { + "@module": "turbomoleio.output.data", + "@class": "RiData", + "@version": "1.3.0", + "ricore": 500, + "marij": false, + "rij_memory": 3, + "rik": false + }, + "spherical_gridsize": 3, + "gridpoints": 302, + "dispersion_correction": null + }, + "escf": { + "@module": "turbomoleio.output.data", + "@class": "EscfData", + "@version": "1.3.0", + "calc_type": "RPA UHF-EXCITATION", + "iterations": { + "@module": "turbomoleio.output.data", + "@class": "EscfIterationData", + "@version": "1.3.0", + "steps": [ + [ + [ + "a", + 0, + 0.07883659515532002 + ] + ], + [ + [ + "a", + 0, + 0.02178615279982761 + ] + ], + [ + [ + "a", + 0, + 0.003048709095992678 + ] + ], + [ + [ + "a", + 1, + 0.0005923431214770775 + ] + ], + [ + [ + "a", + 5, + 0.0001460143461808554 + ] + ], + [ + [ + "a", + 9, + 2.59024460222327e-05 + ] + ], + [ + [ + "a", + 10, + 9.666026785391291e-06 + ] + ] + ], + "converged": true + }, + "residuum_convergence_criterium": 1e-05, + "n_occupied_orbitals": 16, + "orbital_characterization": "scfconv=7", + "max_davidson_iter": 35, + "machine_precision": 2.22e-16, + "max_core_mem": 500.0, + "max_cao_basis_vectors": 8747, + "max_treated_vectors": 18, + "irrep_data": { + "a": { + "tensor_space_dim": 1255, + "n_roots": 10 + } + }, + "gs_tot_en": -280.0695809101, + "excitations": { + "a": [ + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -280.0032131563601, + "osc_stre": 3.719565467446828e-10, + "rot_stre": -2.148551926178635e-07, + "dominant_contributions": [ + { + "occ_orb": { + "index": 15, + "irrep": "a", + "energy": -8.83, + "spin": "beta" + }, + "virt_orb": { + "index": 16, + "irrep": "a", + "energy": -6.9, + "spin": "beta" + }, + "coeff": 98.4 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 8.9e-05, + -2e-05, + -3e-06 + ], + "magnetic_dipole": [ + -0.002347, + 0.000244, + 0.0 + ], + "electric_quadrupole": { + "trace": 3e-06, + "anisotropy": 0.366824, + "moment": [ + [ + 0.000104, + 1.6e-05, + 0.021883 + ], + [ + 1.6e-05, + -9.6e-05, + 0.210652 + ], + [ + 0.021883, + 0.210652, + -5e-06 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -280.0032035309166, + "osc_stre": 4.24192935463934e-10, + "rot_stre": -2.239185648833963e-07, + "dominant_contributions": [ + { + "occ_orb": { + "index": 14, + "irrep": "a", + "energy": -8.83, + "spin": "beta" + }, + "virt_orb": { + "index": 16, + "irrep": "a", + "energy": -6.9, + "spin": "beta" + }, + "coeff": 98.4 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + -3e-06, + -9.5e-05, + -2.3e-05 + ], + "magnetic_dipole": [ + 0.000244, + 0.002346, + -0.0 + ], + "electric_quadrupole": { + "trace": 3e-06, + "anisotropy": 0.366808, + "moment": [ + [ + 3e-06, + 0.000121, + 0.210642 + ], + [ + 0.000121, + 4e-06, + -0.021891 + ], + [ + 0.210642, + -0.021891, + -4e-06 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -279.971923215418, + "osc_stre": 0.01213515055616938, + "rot_stre": 1.691598833380001e-07, + "dominant_contributions": [ + { + "occ_orb": { + "index": 13, + "irrep": "a", + "energy": -9.11, + "spin": "beta" + }, + "virt_orb": { + "index": 16, + "irrep": "a", + "energy": -6.9, + "spin": "beta" + }, + "coeff": 92.8 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.420261, + -0.098865, + -3e-06 + ], + "magnetic_dipole": [ + 0.0, + -0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 2.1e-05, + "anisotropy": 1.117809, + "moment": [ + [ + 0.628228, + 0.147829, + -1.7e-05 + ], + [ + 0.147829, + -0.628189, + -5.2e-05 + ], + [ + -1.7e-05, + -5.2e-05, + -1.6e-05 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -279.9719177248412, + "osc_stre": 0.01212432500695806, + "rot_stre": 1.803709060411251e-07, + "dominant_contributions": [ + { + "occ_orb": { + "index": 12, + "irrep": "a", + "energy": -9.11, + "spin": "beta" + }, + "virt_orb": { + "index": 16, + "irrep": "a", + "energy": -6.9, + "spin": "beta" + }, + "coeff": 92.8 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + -0.098915, + -0.420038, + -3e-06 + ], + "magnetic_dipole": [ + -0.0, + -0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 3e-06, + "anisotropy": 1.117786, + "moment": [ + [ + -0.14786, + 0.628187, + -4.2e-05 + ], + [ + 0.628187, + 0.147859, + 8e-06 + ], + [ + -4.2e-05, + 8e-06, + 5e-06 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -279.883228397969, + "osc_stre": 1.432831275341385e-12, + "rot_stre": -4.774971882692591e-13, + "dominant_contributions": [ + { + "occ_orb": { + "index": 16, + "irrep": "a", + "energy": -8.17, + "spin": "alpha" + }, + "virt_orb": { + "index": 17, + "irrep": "a", + "energy": -3.04, + "spin": "alpha" + }, + "coeff": 99.7 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + -3e-06, + -1e-06, + -1e-06 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": -1.5000000000000002e-05, + "anisotropy": 5.9e-05, + "moment": [ + [ + -0.0, + -5e-06, + -1.3e-05 + ], + [ + -5e-06, + -6e-06, + 3.1e-05 + ], + [ + -1.3e-05, + 3.1e-05, + -1e-05 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -279.8785348391943, + "osc_stre": 0.0001027026101658901, + "rot_stre": 6.779938106634969e-09, + "dominant_contributions": [ + { + "occ_orb": { + "index": 15, + "irrep": "a", + "energy": -9.08, + "spin": "alpha" + }, + "virt_orb": { + "index": 17, + "irrep": "a", + "energy": -3.04, + "spin": "alpha" + }, + "coeff": 46.2 + }, + { + "occ_orb": { + "index": 14, + "irrep": "a", + "energy": -8.83, + "spin": "beta" + }, + "virt_orb": { + "index": 17, + "irrep": "a", + "energy": -2.91, + "spin": "beta" + }, + "coeff": 39.9 + }, + { + "occ_orb": { + "index": 15, + "irrep": "a", + "energy": -8.83, + "spin": "beta" + }, + "virt_orb": { + "index": 17, + "irrep": "a", + "energy": -2.91, + "spin": "beta" + }, + "coeff": 12.9 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.008308, + -0.027154, + -0.0 + ], + "magnetic_dipole": [ + 0.0, + -0.0, + -0.0 + ], + "electric_quadrupole": { + "trace": 6e-06, + "anisotropy": 0.027907, + "moment": [ + [ + 0.004742, + 0.0154, + 2.2e-05 + ], + [ + 0.0154, + -0.004736, + 7e-06 + ], + [ + 2.2e-05, + 7e-06, + 1e-06 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -279.8785300080916, + "osc_stre": 0.0001032848671235739, + "rot_stre": 5.425456433189068e-09, + "dominant_contributions": [ + { + "occ_orb": { + "index": 14, + "irrep": "a", + "energy": -9.08, + "spin": "alpha" + }, + "virt_orb": { + "index": 17, + "irrep": "a", + "energy": -3.04, + "spin": "alpha" + }, + "coeff": 46.2 + }, + { + "occ_orb": { + "index": 15, + "irrep": "a", + "energy": -8.83, + "spin": "beta" + }, + "virt_orb": { + "index": 17, + "irrep": "a", + "energy": -2.91, + "spin": "beta" + }, + "coeff": 39.9 + }, + { + "occ_orb": { + "index": 14, + "irrep": "a", + "energy": -8.83, + "spin": "beta" + }, + "virt_orb": { + "index": 17, + "irrep": "a", + "energy": -2.91, + "spin": "beta" + }, + "coeff": 12.9 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.027245, + 0.008285, + -0.0 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 1.2e-05, + "anisotropy": 0.028127, + "moment": [ + [ + 0.01555, + -0.004701, + -6e-06 + ], + [ + -0.004701, + -0.015538, + 1.8e-05 + ], + [ + -6e-06, + 1.8e-05, + 1e-06 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -279.8470719905897, + "osc_stre": 1.201117362086292e-10, + "rot_stre": 6.172453712726647e-08, + "dominant_contributions": [ + { + "occ_orb": { + "index": 13, + "irrep": "a", + "energy": -9.11, + "spin": "beta" + }, + "virt_orb": { + "index": 17, + "irrep": "a", + "energy": -2.91, + "spin": "beta" + }, + "coeff": 93.7 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + -2.8e-05, + 7e-06, + 0.0 + ], + "magnetic_dipole": [ + -0.002194, + 0.000184, + 0.0 + ], + "electric_quadrupole": { + "trace": -0.0, + "anisotropy": 0.393491, + "moment": [ + [ + -4.5e-05, + -4e-06, + -0.018976 + ], + [ + -4e-06, + 4.5e-05, + -0.226388 + ], + [ + -0.018976, + -0.226388, + -1e-06 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -279.8470565182872, + "osc_stre": 1.653587585761768e-10, + "rot_stre": 6.773590398298486e-08, + "dominant_contributions": [ + { + "occ_orb": { + "index": 12, + "irrep": "a", + "energy": -9.11, + "spin": "beta" + }, + "virt_orb": { + "index": 17, + "irrep": "a", + "energy": -2.91, + "spin": "beta" + }, + "coeff": 93.7 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + -2e-06, + -3.1e-05, + -1.3e-05 + ], + "magnetic_dipole": [ + -0.000184, + -0.002194, + -0.0 + ], + "electric_quadrupole": { + "trace": -3e-06, + "anisotropy": 0.39352, + "moment": [ + [ + -1e-06, + 6.1e-05, + 0.226404 + ], + [ + 6.1e-05, + -0.0, + -0.018993 + ], + [ + 0.226404, + -0.018993, + -1e-06 + ] + ] + } + } + ] + }, + { + "@module": "turbomoleio.output.data", + "@class": "SingleExcitation", + "@version": "1.3.0", + "tot_en": -279.811630271145, + "osc_stre": 1.847569671416052e-09, + "rot_stre": 3.638879465011652e-07, + "dominant_contributions": [ + { + "occ_orb": { + "index": 13, + "irrep": "a", + "energy": -10.06, + "spin": "alpha" + }, + "virt_orb": { + "index": 17, + "irrep": "a", + "energy": -3.04, + "spin": "alpha" + }, + "coeff": 57.7 + }, + { + "occ_orb": { + "index": 12, + "irrep": "a", + "energy": -10.06, + "spin": "alpha" + }, + "virt_orb": { + "index": 17, + "irrep": "a", + "energy": -3.04, + "spin": "alpha" + }, + "coeff": 35.9 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 9e-05, + -5e-05, + -9e-06 + ], + "magnetic_dipole": [ + 0.003244, + -0.001418, + -0.0 + ], + "electric_quadrupole": { + "trace": -3e-06, + "anisotropy": 0.721024, + "moment": [ + [ + 0.000313, + 0.00016, + 0.166717 + ], + [ + 0.00016, + -0.000315, + 0.381441 + ], + [ + 0.166717, + 0.381441, + -2e-06 + ] + ] + } + } + ] + } + ] + } + }, + "geometry": { + "@module": "turbomoleio.output.data", + "@class": "GeometryData", + "@version": "1.3.0", + "center_of_mass": [ + 0.0, + 0.0, + 0.0 + ], + "center_of_charge": [ + 0.0, + 0.0, + 0.0 + ], + "molecule": { + "@module": "pymatgen.core.structure", + "@class": "Molecule", + "charge": 0.0, + "spin_multiplicity": 2, + "sites": [ + { + "name": "O", + "species": [ + { + "element": "O", + "occu": 1 + } + ], + "xyz": [ + -0.6090991837390951, + -1.0549907333237556, + 0.0 + ], + "properties": {} + }, + { + "name": "N", + "species": [ + { + "element": "N", + "occu": 1 + } + ], + "xyz": [ + 0.0, + 0.0, + 0.0 + ], + "properties": {} + }, + { + "name": "O", + "species": [ + { + "element": "O", + "occu": 1 + } + ], + "xyz": [ + -0.6090991837390951, + 1.0549907333237556, + 0.0 + ], + "properties": {} + }, + { + "name": "O", + "species": [ + { + "element": "O", + "occu": 1 + } + ], + "xyz": [ + 1.2181983621864179, + 0.0, + 0.0 + ], + "properties": {} + } + ] + } + }, + "basis": { + "@module": "turbomoleio.output.data", + "@class": "BasisData", + "@version": "1.3.0", + "basis_per_specie": { + "o": "def-SV(P)", + "n": "def-SV(P)" + }, + "aux_basis_per_specie": {}, + "number_scf_basis_func": 56, + "number_scf_aux_basis_func": 148 + }, + "run": { + "@module": "turbomoleio.output.data", + "@class": "RunData", + "@version": "1.3.0", + "host": "frontal3", + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:19:02.284000" + }, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:19:05.973000" + }, + "cpu_time": 2.11, + "wall_time": 3.74 + }, + "tm": { + "@module": "turbomoleio.output.data", + "@class": "TurbomoleData", + "@version": "1.3.0", + "version": "7.6", + "build": null, + "executable": "escf" + }, + "cosmo": { + "@module": "turbomoleio.output.data", + "@class": "CosmoData", + "@version": "1.3.0", + "info": { + "area": 267.911883, + "volume": 374.012013 + }, + "parameters": null, + "screening_charge": null, + "energies": null, + "element_radius": null + }, + "integral": { + "@module": "turbomoleio.output.data", + "@class": "IntegralData", + "@version": "1.3.0", + "integral_neglect_threshold": 3.3e-13, + "thize": 1e-05, + "thime": 5 + }, + "symmetry": { + "@module": "turbomoleio.output.data", + "@class": "SymmetryData", + "@version": "1.3.0", + "symbol": "c1", + "n_reps": 1, + "reps": [ + "a" + ] + } +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/escf/no3_ridft_cosmo/ref_parser.json b/turbomoleio/testfiles/outputs/TM_v7.6/escf/no3_ridft_cosmo/ref_parser.json new file mode 100644 index 0000000..1e17da7 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/escf/no3_ridft_cosmo/ref_parser.json @@ -0,0 +1,860 @@ +{ + "all_done": true, + "header": { + "executable": "escf", + "host": "frontal3", + "tm_version": "7.6", + "tm_build": null, + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:19:02.284000" + } + }, + "centers": { + "center_of_mass": [ + 0.0, + 0.0, + 0.0 + ], + "center_of_charge": [ + 0.0, + 0.0, + 0.0 + ] + }, + "coordinates": { + "coords": [ + [ + -1.15103064, + -1.99364355, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ], + [ + -1.15103064, + 1.99364355, + 0.0 + ], + [ + 2.30206127, + 0.0, + 0.0 + ] + ], + "species": [ + "o", + "n", + "o", + "o" + ], + "charges": [ + 8.0, + 7.0, + 8.0, + 8.0 + ], + "isotopes": [ + 0, + 0, + 0, + 0 + ] + }, + "basis": { + "basis_per_specie": { + "o": "def-SV(P)", + "n": "def-SV(P)" + }, + "aux_basis_per_specie": {}, + "number_scf_basis_func": 56, + "number_scf_aux_basis_func": 148 + }, + "symmetry": { + "symbol": "c1", + "n_reps": 1, + "reps": [ + "a" + ] + }, + "cosmo_header": { + "area": 267.911883, + "volume": 374.012013 + }, + "density_functional_data": { + "functional_msg": "B-P86 functional\n exchange: LDA + Becke (B88)\n correlation: LDA (VWN) + Perdew (P86)", + "functional_name": "b-p", + "functional_type": "GGA", + "xcfun": null, + "spherical_gridsize": 3, + "gridpoints": 302 + }, + "rij_info": { + "marij": false, + "rij_memory": 3, + "rik": false, + "ricore": 500 + }, + "dftd": null, + "pre_scf_run": null, + "scf_iterations": null, + "scf_energies": null, + "cosmo_results": null, + "electrostatic_moments": null, + "timings": { + "cpu_time": 2.11, + "wall_time": 3.74, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:19:05.973000" + } + }, + "s2": null, + "is_uhf": true, + "fermi": null, + "integral": { + "integral_neglect_threshold": 3.3e-13, + "thize": 1e-05, + "thime": 5 + }, + "pre_escf_run": { + "calc_type": "RPA UHF-EXCITATION", + "residuum_convergence_criterium": 1e-05, + "n_occupied_orbitals": 16, + "orbital_characterization": "scfconv=7", + "max_davidson_iter": 35, + "machine_precision": 2.22e-16, + "max_core_mem": 500.0, + "max_cao_basis_vectors": 8747, + "max_treated_vectors": 18, + "irrep_data": { + "a": { + "tensor_space_dim": 1255, + "n_roots": 10 + } + } + }, + "escf_iterations": { + "steps": [ + [ + [ + "a", + 0, + 0.07883659515532002 + ] + ], + [ + [ + "a", + 0, + 0.02178615279982761 + ] + ], + [ + [ + "a", + 0, + 0.003048709095992678 + ] + ], + [ + [ + "a", + 1, + 0.0005923431214770775 + ] + ], + [ + [ + "a", + 5, + 0.0001460143461808554 + ] + ], + [ + [ + "a", + 9, + 2.59024460222327e-05 + ] + ], + [ + [ + "a", + 10, + 9.666026785391291e-06 + ] + ] + ], + "converged": true + }, + "escf_gs_total_en": -280.0695809101, + "escf_excitations": { + "a": [ + { + "tot_en": -280.0032131563601, + "osc_stre": 3.719565467446828e-10, + "rot_stre": -2.148551926178635e-07, + "dominant_contributions": [ + { + "occ_orb": { + "index": 15, + "irrep": "a", + "energy": -8.83, + "spin": "beta" + }, + "virt_orb": { + "index": 16, + "irrep": "a", + "energy": -6.9, + "spin": "beta" + }, + "coeff": 98.4 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 8.9e-05, + -2e-05, + -3e-06 + ], + "magnetic_dipole": [ + -0.002347, + 0.000244, + 0.0 + ], + "electric_quadrupole": { + "trace": 3e-06, + "anisotropy": 0.366824, + "moment": [ + [ + 0.000104, + 1.6e-05, + 0.021883 + ], + [ + 1.6e-05, + -9.6e-05, + 0.210652 + ], + [ + 0.021883, + 0.210652, + -5e-06 + ] + ] + } + } + ] + }, + { + "tot_en": -280.0032035309166, + "osc_stre": 4.24192935463934e-10, + "rot_stre": -2.239185648833963e-07, + "dominant_contributions": [ + { + "occ_orb": { + "index": 14, + "irrep": "a", + "energy": -8.83, + "spin": "beta" + }, + "virt_orb": { + "index": 16, + "irrep": "a", + "energy": -6.9, + "spin": "beta" + }, + "coeff": 98.4 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + -3e-06, + -9.5e-05, + -2.3e-05 + ], + "magnetic_dipole": [ + 0.000244, + 0.002346, + -0.0 + ], + "electric_quadrupole": { + "trace": 3e-06, + "anisotropy": 0.366808, + "moment": [ + [ + 3e-06, + 0.000121, + 0.210642 + ], + [ + 0.000121, + 4e-06, + -0.021891 + ], + [ + 0.210642, + -0.021891, + -4e-06 + ] + ] + } + } + ] + }, + { + "tot_en": -279.971923215418, + "osc_stre": 0.01213515055616938, + "rot_stre": 1.691598833380001e-07, + "dominant_contributions": [ + { + "occ_orb": { + "index": 13, + "irrep": "a", + "energy": -9.11, + "spin": "beta" + }, + "virt_orb": { + "index": 16, + "irrep": "a", + "energy": -6.9, + "spin": "beta" + }, + "coeff": 92.8 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.420261, + -0.098865, + -3e-06 + ], + "magnetic_dipole": [ + 0.0, + -0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 2.1e-05, + "anisotropy": 1.117809, + "moment": [ + [ + 0.628228, + 0.147829, + -1.7e-05 + ], + [ + 0.147829, + -0.628189, + -5.2e-05 + ], + [ + -1.7e-05, + -5.2e-05, + -1.6e-05 + ] + ] + } + } + ] + }, + { + "tot_en": -279.9719177248412, + "osc_stre": 0.01212432500695806, + "rot_stre": 1.803709060411251e-07, + "dominant_contributions": [ + { + "occ_orb": { + "index": 12, + "irrep": "a", + "energy": -9.11, + "spin": "beta" + }, + "virt_orb": { + "index": 16, + "irrep": "a", + "energy": -6.9, + "spin": "beta" + }, + "coeff": 92.8 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + -0.098915, + -0.420038, + -3e-06 + ], + "magnetic_dipole": [ + -0.0, + -0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 3e-06, + "anisotropy": 1.117786, + "moment": [ + [ + -0.14786, + 0.628187, + -4.2e-05 + ], + [ + 0.628187, + 0.147859, + 8e-06 + ], + [ + -4.2e-05, + 8e-06, + 5e-06 + ] + ] + } + } + ] + }, + { + "tot_en": -279.883228397969, + "osc_stre": 1.432831275341385e-12, + "rot_stre": -4.774971882692591e-13, + "dominant_contributions": [ + { + "occ_orb": { + "index": 16, + "irrep": "a", + "energy": -8.17, + "spin": "alpha" + }, + "virt_orb": { + "index": 17, + "irrep": "a", + "energy": -3.04, + "spin": "alpha" + }, + "coeff": 99.7 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + -3e-06, + -1e-06, + -1e-06 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": -1.5000000000000002e-05, + "anisotropy": 5.9e-05, + "moment": [ + [ + -0.0, + -5e-06, + -1.3e-05 + ], + [ + -5e-06, + -6e-06, + 3.1e-05 + ], + [ + -1.3e-05, + 3.1e-05, + -1e-05 + ] + ] + } + } + ] + }, + { + "tot_en": -279.8785348391943, + "osc_stre": 0.0001027026101658901, + "rot_stre": 6.779938106634969e-09, + "dominant_contributions": [ + { + "occ_orb": { + "index": 15, + "irrep": "a", + "energy": -9.08, + "spin": "alpha" + }, + "virt_orb": { + "index": 17, + "irrep": "a", + "energy": -3.04, + "spin": "alpha" + }, + "coeff": 46.2 + }, + { + "occ_orb": { + "index": 14, + "irrep": "a", + "energy": -8.83, + "spin": "beta" + }, + "virt_orb": { + "index": 17, + "irrep": "a", + "energy": -2.91, + "spin": "beta" + }, + "coeff": 39.9 + }, + { + "occ_orb": { + "index": 15, + "irrep": "a", + "energy": -8.83, + "spin": "beta" + }, + "virt_orb": { + "index": 17, + "irrep": "a", + "energy": -2.91, + "spin": "beta" + }, + "coeff": 12.9 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.008308, + -0.027154, + -0.0 + ], + "magnetic_dipole": [ + 0.0, + -0.0, + -0.0 + ], + "electric_quadrupole": { + "trace": 6e-06, + "anisotropy": 0.027907, + "moment": [ + [ + 0.004742, + 0.0154, + 2.2e-05 + ], + [ + 0.0154, + -0.004736, + 7e-06 + ], + [ + 2.2e-05, + 7e-06, + 1e-06 + ] + ] + } + } + ] + }, + { + "tot_en": -279.8785300080916, + "osc_stre": 0.0001032848671235739, + "rot_stre": 5.425456433189068e-09, + "dominant_contributions": [ + { + "occ_orb": { + "index": 14, + "irrep": "a", + "energy": -9.08, + "spin": "alpha" + }, + "virt_orb": { + "index": 17, + "irrep": "a", + "energy": -3.04, + "spin": "alpha" + }, + "coeff": 46.2 + }, + { + "occ_orb": { + "index": 15, + "irrep": "a", + "energy": -8.83, + "spin": "beta" + }, + "virt_orb": { + "index": 17, + "irrep": "a", + "energy": -2.91, + "spin": "beta" + }, + "coeff": 39.9 + }, + { + "occ_orb": { + "index": 14, + "irrep": "a", + "energy": -8.83, + "spin": "beta" + }, + "virt_orb": { + "index": 17, + "irrep": "a", + "energy": -2.91, + "spin": "beta" + }, + "coeff": 12.9 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 0.027245, + 0.008285, + -0.0 + ], + "magnetic_dipole": [ + 0.0, + 0.0, + 0.0 + ], + "electric_quadrupole": { + "trace": 1.2e-05, + "anisotropy": 0.028127, + "moment": [ + [ + 0.01555, + -0.004701, + -6e-06 + ], + [ + -0.004701, + -0.015538, + 1.8e-05 + ], + [ + -6e-06, + 1.8e-05, + 1e-06 + ] + ] + } + } + ] + }, + { + "tot_en": -279.8470719905897, + "osc_stre": 1.201117362086292e-10, + "rot_stre": 6.172453712726647e-08, + "dominant_contributions": [ + { + "occ_orb": { + "index": 13, + "irrep": "a", + "energy": -9.11, + "spin": "beta" + }, + "virt_orb": { + "index": 17, + "irrep": "a", + "energy": -2.91, + "spin": "beta" + }, + "coeff": 93.7 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + -2.8e-05, + 7e-06, + 0.0 + ], + "magnetic_dipole": [ + -0.002194, + 0.000184, + 0.0 + ], + "electric_quadrupole": { + "trace": -0.0, + "anisotropy": 0.393491, + "moment": [ + [ + -4.5e-05, + -4e-06, + -0.018976 + ], + [ + -4e-06, + 4.5e-05, + -0.226388 + ], + [ + -0.018976, + -0.226388, + -1e-06 + ] + ] + } + } + ] + }, + { + "tot_en": -279.8470565182872, + "osc_stre": 1.653587585761768e-10, + "rot_stre": 6.773590398298486e-08, + "dominant_contributions": [ + { + "occ_orb": { + "index": 12, + "irrep": "a", + "energy": -9.11, + "spin": "beta" + }, + "virt_orb": { + "index": 17, + "irrep": "a", + "energy": -2.91, + "spin": "beta" + }, + "coeff": 93.7 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + -2e-06, + -3.1e-05, + -1.3e-05 + ], + "magnetic_dipole": [ + -0.000184, + -0.002194, + -0.0 + ], + "electric_quadrupole": { + "trace": -3e-06, + "anisotropy": 0.39352, + "moment": [ + [ + -1e-06, + 6.1e-05, + 0.226404 + ], + [ + 6.1e-05, + -0.0, + -0.018993 + ], + [ + 0.226404, + -0.018993, + -1e-06 + ] + ] + } + } + ] + }, + { + "tot_en": -279.811630271145, + "osc_stre": 1.847569671416052e-09, + "rot_stre": 3.638879465011652e-07, + "dominant_contributions": [ + { + "occ_orb": { + "index": 13, + "irrep": "a", + "energy": -10.06, + "spin": "alpha" + }, + "virt_orb": { + "index": 17, + "irrep": "a", + "energy": -3.04, + "spin": "alpha" + }, + "coeff": 57.7 + }, + { + "occ_orb": { + "index": 12, + "irrep": "a", + "energy": -10.06, + "spin": "alpha" + }, + "virt_orb": { + "index": 17, + "irrep": "a", + "energy": -3.04, + "spin": "alpha" + }, + "coeff": 35.9 + } + ], + "moments_columns": [ + { + "electric_dipole": [ + 9e-05, + -5e-05, + -9e-06 + ], + "magnetic_dipole": [ + 0.003244, + -0.001418, + -0.0 + ], + "electric_quadrupole": { + "trace": -3e-06, + "anisotropy": 0.721024, + "moment": [ + [ + 0.000313, + 0.00016, + 0.166717 + ], + [ + 0.00016, + -0.000315, + 0.381441 + ], + [ + 0.166717, + 0.381441, + -2e-06 + ] + ] + } + } + ] + } + ] + }, + "rdgrad_memory": null, + "gradient": null, + "egrad_excited_state": null, + "statpt_info": null, + "relax_info": null, + "relax_gradient_values": null, + "relax_conv_info": null, + "aoforce_numerical_integration": null, + "aoforce_analysis": null, + "mp2_results": { + "energy": null + }, + "riper_scf_energies": null, + "periodicity_data": null +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/grad/h2o_std/grad.log b/turbomoleio/testfiles/outputs/TM_v7.6/grad/h2o_std/grad.log new file mode 100644 index 0000000..c4b42b8 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/grad/h2o_std/grad.log @@ -0,0 +1,237 @@ + + grad (frontal3) : TURBOMOLE rev. V7-6 19 Oct 2021 at 10:10:11 compiled Oct 19th 2021 + Copyright (C) 2021 TURBOMOLE GmbH, Karlsruhe + + + 2023-01-25 00:19:26.512 + + + + g r a d - program + + reinhart ahlrichs, hans horn & ansgar schaefer + density functional version : oliver treutler + + + quantum chemistry group + universitaet karlsruhe + germany + + + + + + References: + + Density Functional: + O. Treutler and R. Ahlrichs + Efficient Molecular Numerical Integration Schemes + J. Chem. Phys. 102: 346 (1995) + Parallel Version: + Performance of parallel TURBOMOLE for Density + Functional Calculations + M. v. Arnim and R. Ahlrichs + J. Comp. Chem. 19: 1746 (1998) + + + + + + +--------------------------------------------------+ + | Atomic coordinate, charge and isotop information | + +--------------------------------------------------+ + + atomic coordinates atom charge isotop + 0.00000000 0.00000000 -0.72557892 o 8.000 0 + 1.41713421 0.00000000 0.36278946 h 1.000 0 + -1.41713421 0.00000000 0.36278946 h 1.000 0 + + center of nuclear mass : 0.00000000 0.00000000 -0.60378908 + center of nuclear charge: 0.00000000 0.00000000 -0.50790524 + + +--------------------------------------------------+ + | basis set information | + +--------------------------------------------------+ + + we will work with the 1s 3p 5d 7f 9g ... basis set + ...i.e. with spherical basis functions... + + type atoms prim cont basis + --------------------------------------------------------------------------- + o 1 24 14 def-SV(P) [3s2p1d|7s4p1d] + h 2 4 2 def-SV(P) [2s|4s] + --------------------------------------------------------------------------- + total: 3 32 18 + --------------------------------------------------------------------------- + + total number of primitive shells : 16 + total number of contracted shells : 10 + total number of cartesian basis functions : 19 + total number of SCF-basis functions : 18 + + + ************************************************************************* + dscf + ************************************************************************* + + + + integral neglect threshold : 0.18E-09 + integral storage threshold THIZE : 0.10E-04 + integral storage threshold THIME : 5 + + + WARNING : cannot change filename for statistics + + symmetry group of the molecule : c2v + + the group has the following generators : + c2(z) + mirror plane sigma(xz) + + 4 symmetry operations found + + there are 4 real representations : a1 a2 b1 b2 + + maximum number of shells which are related by symmetry : 2 + + + mo occupation : + irrep mo's occupied + a1 9 3 + a2 1 0 + b1 5 1 + b2 3 1 + + number of basis functions : 18 + number of occupied orbitals : 5 + + + number of off-diagonal lagrangians expected : 0 + MOs are in ASCII format ! + + + reading orbital data $scfmo from file mos + orbital characterization : scfconv=7 + time elapsed for calculating density matrices : 0.000 sec + + grad preliminaries : cpu elapsed 0.030 s + wall 0.188 s + + ------------------ + density functional + ------------------ + B-P86 functional + exchange: LDA + Becke (B88) + correlation: LDA (VWN) + Perdew (P86) + + iterations will be done with small grid + + spherical integration : Lebedev's spherical grid + spherical gridsize : 3 + i.e. gridpoints : 302 + value for diffuse not defined + radial integration : Chebyshev 2nd kind (scaling 3) + radial gridsize : 3 + integration cells : 2 + partition function : becke + partition sharpness : 3 + + + : input of entry tasksize + from data group '$pardft' failed ! + + Default values taken + + : input of entry memdiv + from data group '$pardft' failed ! + + Default values taken + + + + and now featuring + the super-duper gradient ..... wow ..... + + + ------------------------------------------------------------------------------ + + SCF ENERGY GRADIENT with respect to NUCLEAR COORDINATES + + ------------------------------------------------------------------------------ + + + + ---------------------------------------- + S+T+V CONTRIBUTIONS TO ENERGY GRADIENT + ---------------------------------------- + + 1e-integral 1st. derivatives will be neglected if expon. factor < 0.100000E-10 + + cpu time for 1e-part of gradient : 0.00 sec + + + ----------------------------------------------- + TWO ELECTRON CONTRIBUTIONS TO ENERGY GRADIENT + ----------------------------------------------- + + biggest 1-particle AO density matrix element is expected to be 2.1355116296 + + setting up bound for integral derivative estimation + + increment for numerical differentiation : 0.00050000 + + biggest AO integral is expected to be 4.776656448 + biggest cartesian 1st derivative AO integral is expected to be 8.648821438 + + 2e-integral 1st. derivatives will be neglected if expon. factor < 0.100000E-06 + outer boundary for 2e-integral derivative neglection is 0.182732E-08 + + cpu time for 2e-part of gradient : 0.00 min + + Overall gridpoints after grid construction = 3891 + + Integrated ground state density : 9.999998377624109 + + + ------------------------------------------------ + cartesian gradient of the energy (hartree/bohr) + ------------------------------------------------ + + ATOM 1 o 2 h 3 h +dE/dx 0.0000000D+00 -0.2701367D-01 0.2701367D-01 +dE/dy 0.0000000D+00 0.0000000D+00 0.0000000D+00 +dE/dz 0.4134789D-01 -0.2065737D-01 -0.2065737D-01 + + resulting FORCE (fx,fy,fz) = (-.173D-16,0.000D+00,0.332D-04) + resulting MOMENT (mx,my,mz) = (0.000D+00,-.694D-17,0.000D+00) + + + exx = -0.076564 eyy = 0.000000 ezz = -0.044990 + eyz = 0.000000 exz = -0.000000 exy = 0.000000 + + + ********************************************************************** + |maximum component of gradient| : 0.41347887E-01 (atom 1 o ) + gradient norm : 0.63423797E-01 + ********************************************************************** + + : data group $grad is missing + + *** cartesian gradients written onto *** + + + --- calculation of the energy gradient finished --- + + + + ------------------------------------------------------------------------ + total cpu-time : 0.06 seconds + total wall-time : 0.28 seconds + ------------------------------------------------------------------------ + + **** grad : all done **** + + + 2023-01-25 00:19:26.721 + diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/grad/h2o_std/ref_output.json b/turbomoleio/testfiles/outputs/TM_v7.6/grad/h2o_std/ref_output.json new file mode 100644 index 0000000..e5ad3b4 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/grad/h2o_std/ref_output.json @@ -0,0 +1,66 @@ +{ + "@module": "turbomoleio.output.files", + "@class": "GradOutput", + "@version": "1.3.0", + "gradients": [ + [ + 0.0, + 0.0, + 0.04134789 + ], + [ + -0.02701367, + 0.0, + -0.02065737 + ], + [ + 0.02701367, + 0.0, + -0.02065737 + ] + ], + "dielectric": [ + [ + -0.076564, + 0.0, + -0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ], + [ + -0.0, + 0.0, + -0.04499 + ] + ], + "run": { + "@module": "turbomoleio.output.data", + "@class": "RunData", + "@version": "1.3.0", + "host": "frontal3", + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:19:26.512000" + }, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:19:26.721000" + }, + "cpu_time": 0.06, + "wall_time": 0.28 + }, + "tm": { + "@module": "turbomoleio.output.data", + "@class": "TurbomoleData", + "@version": "1.3.0", + "version": "7.6", + "build": null, + "executable": "grad" + }, + "memory": null +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/grad/h2o_std/ref_parser.json b/turbomoleio/testfiles/outputs/TM_v7.6/grad/h2o_std/ref_parser.json new file mode 100644 index 0000000..46d588d --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/grad/h2o_std/ref_parser.json @@ -0,0 +1,165 @@ +{ + "all_done": true, + "header": { + "executable": "grad", + "host": "frontal3", + "tm_version": "7.6", + "tm_build": null, + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:19:26.512000" + } + }, + "centers": { + "center_of_mass": [ + 0.0, + 0.0, + -0.60378908 + ], + "center_of_charge": [ + 0.0, + 0.0, + -0.50790524 + ] + }, + "coordinates": { + "coords": [ + [ + 0.0, + 0.0, + -0.72557892 + ], + [ + 1.41713421, + 0.0, + 0.36278946 + ], + [ + -1.41713421, + 0.0, + 0.36278946 + ] + ], + "species": [ + "o", + "h", + "h" + ], + "charges": [ + 8.0, + 1.0, + 1.0 + ], + "isotopes": [ + 0, + 0, + 0 + ] + }, + "basis": { + "basis_per_specie": { + "o": "def-SV(P)", + "h": "def-SV(P)" + }, + "aux_basis_per_specie": {}, + "number_scf_basis_func": 18, + "number_scf_aux_basis_func": null + }, + "symmetry": { + "symbol": "c2v", + "n_reps": 4, + "reps": [ + "a1", + "a2", + "b1", + "b2" + ] + }, + "cosmo_header": null, + "density_functional_data": { + "functional_msg": "B-P86 functional\n exchange: LDA + Becke (B88)\n correlation: LDA (VWN) + Perdew (P86)", + "functional_name": "b-p", + "functional_type": "GGA", + "xcfun": null, + "spherical_gridsize": 3, + "gridpoints": 302 + }, + "rij_info": null, + "dftd": null, + "pre_scf_run": null, + "scf_iterations": null, + "scf_energies": null, + "cosmo_results": null, + "electrostatic_moments": null, + "timings": { + "cpu_time": 0.06, + "wall_time": 0.28, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:19:26.721000" + } + }, + "s2": null, + "is_uhf": false, + "fermi": null, + "integral": { + "integral_neglect_threshold": 1.8e-10, + "thize": 1e-05, + "thime": 5 + }, + "pre_escf_run": null, + "escf_iterations": null, + "escf_gs_total_en": null, + "escf_excitations": null, + "rdgrad_memory": null, + "gradient": { + "gradients": [ + [ + 0.0, + 0.0, + 0.04134789 + ], + [ + -0.02701367, + 0.0, + -0.02065737 + ], + [ + 0.02701367, + 0.0, + -0.02065737 + ] + ], + "dielectric": [ + [ + -0.076564, + 0.0, + -0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ], + [ + -0.0, + 0.0, + -0.04499 + ] + ] + }, + "egrad_excited_state": null, + "statpt_info": null, + "relax_info": null, + "relax_gradient_values": null, + "relax_conv_info": null, + "aoforce_numerical_integration": null, + "aoforce_analysis": null, + "mp2_results": { + "energy": null + }, + "riper_scf_energies": null, + "periodicity_data": null +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/jobex/h2o_dscf/job.last b/turbomoleio/testfiles/outputs/TM_v7.6/jobex/h2o_dscf/job.last new file mode 100644 index 0000000..0835cea --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/jobex/h2o_dscf/job.last @@ -0,0 +1,661 @@ + +OPTIMIZATION CYCLE 6 +mer 25 gen 2023, 00.20.45, CET + + WARNING : length of argument string +/projects/matgenix/COMMON/software/TURBOMOLE/evaluation_license/TURBOMOLE_76/bin/em64t-unknown-linux-gnu + exceeds 80 characters + argument will be ignored! + + + grad (frontal3) : TURBOMOLE rev. V7-6 19 Oct 2021 at 10:10:11 compiled Oct 19th 2021 + Copyright (C) 2021 TURBOMOLE GmbH, Karlsruhe + + + 2023-01-25 00:20:45.925 + + + + g r a d - program + + reinhart ahlrichs, hans horn & ansgar schaefer + density functional version : oliver treutler + + + quantum chemistry group + universitaet karlsruhe + germany + + + + + + References: + + Density Functional: + O. Treutler and R. Ahlrichs + Efficient Molecular Numerical Integration Schemes + J. Chem. Phys. 102: 346 (1995) + Parallel Version: + Performance of parallel TURBOMOLE for Density + Functional Calculations + M. v. Arnim and R. Ahlrichs + J. Comp. Chem. 19: 1746 (1998) + + + + + + +--------------------------------------------------+ + | Atomic coordinate, charge and isotop information | + +--------------------------------------------------+ + + atomic coordinates atom charge isotop + 0.00000000 0.00000000 -0.76469392 o 8.000 0 + 1.45675797 0.00000000 0.38234696 h 1.000 0 + -1.45675797 0.00000000 0.38234696 h 1.000 0 + + center of nuclear mass : 0.00000000 0.00000000 -0.63633856 + center of nuclear charge: 0.00000000 0.00000000 -0.53528575 + + +--------------------------------------------------+ + | basis set information | + +--------------------------------------------------+ + + we will work with the 1s 3p 5d 7f 9g ... basis set + ...i.e. with spherical basis functions... + + type atoms prim cont basis + --------------------------------------------------------------------------- + o 1 24 14 def-SV(P) [3s2p1d|7s4p1d] + h 2 4 2 def-SV(P) [2s|4s] + --------------------------------------------------------------------------- + total: 3 32 18 + --------------------------------------------------------------------------- + + total number of primitive shells : 16 + total number of contracted shells : 10 + total number of cartesian basis functions : 19 + total number of SCF-basis functions : 18 + + + ************************************************************************* + dscf + ************************************************************************* + + + + integral neglect threshold : 0.18E-09 + integral storage threshold THIZE : 0.10E-04 + integral storage threshold THIME : 5 + + + WARNING : cannot change filename for statistics + + symmetry group of the molecule : c2v + + the group has the following generators : + c2(z) + mirror plane sigma(xz) + + 4 symmetry operations found + + there are 4 real representations : a1 a2 b1 b2 + + maximum number of shells which are related by symmetry : 2 + + + mo occupation : + irrep mo's occupied + a1 9 3 + a2 1 0 + b1 5 1 + b2 3 1 + + number of basis functions : 18 + number of occupied orbitals : 5 + + + number of off-diagonal lagrangians expected : 0 + MOs are in ASCII format ! + + + reading orbital data $scfmo from file mos + orbital characterization : scfconv=7 + time elapsed for calculating density matrices : 0.000 sec + + grad preliminaries : cpu elapsed 0.034 s + wall 0.146 s + + ------------------ + density functional + ------------------ + B-P86 functional + exchange: LDA + Becke (B88) + correlation: LDA (VWN) + Perdew (P86) + + iterations will be done with small grid + + spherical integration : Lebedev's spherical grid + spherical gridsize : 3 + i.e. gridpoints : 302 + value for diffuse not defined + radial integration : Chebyshev 2nd kind (scaling 3) + radial gridsize : 3 + integration cells : 2 + partition function : becke + partition sharpness : 3 + + + : input of entry tasksize + from data group '$pardft' failed ! + + Default values taken + + : input of entry memdiv + from data group '$pardft' failed ! + + Default values taken + + + + and now featuring + the super-duper gradient ..... wow ..... + + + ------------------------------------------------------------------------------ + + SCF ENERGY GRADIENT with respect to NUCLEAR COORDINATES + + ------------------------------------------------------------------------------ + + + + ---------------------------------------- + S+T+V CONTRIBUTIONS TO ENERGY GRADIENT + ---------------------------------------- + + 1e-integral 1st. derivatives will be neglected if expon. factor < 0.100000E-10 + + cpu time for 1e-part of gradient : 0.00 sec + + + ----------------------------------------------- + TWO ELECTRON CONTRIBUTIONS TO ENERGY GRADIENT + ----------------------------------------------- + + biggest 1-particle AO density matrix element is expected to be 2.1367374605 + + setting up bound for integral derivative estimation + + increment for numerical differentiation : 0.00050000 + + biggest AO integral is expected to be 4.776656448 + biggest cartesian 1st derivative AO integral is expected to be 8.648821438 + + 2e-integral 1st. derivatives will be neglected if expon. factor < 0.100000E-06 + outer boundary for 2e-integral derivative neglection is 0.182523E-08 + + cpu time for 2e-part of gradient : 0.00 min + + Overall gridpoints after grid construction = 3892 + + Integrated ground state density : 9.999997541321479 + + + ------------------------------------------------ + cartesian gradient of the energy (hartree/bohr) + ------------------------------------------------ + + ATOM 1 o 2 h 3 h +dE/dx 0.0000000D+00 0.4202808D-04 -0.4202808D-04 +dE/dy 0.0000000D+00 0.0000000D+00 0.0000000D+00 +dE/dz -0.5391513D-04 0.3937219D-04 0.3937219D-04 + + resulting FORCE (fx,fy,fz) = (-.139D-16,0.000D+00,0.248D-04) + resulting MOMENT (mx,my,mz) = (0.000D+00,-.530D-17,0.000D+00) + + + exx = 0.000122 eyy = 0.000000 ezz = 0.000071 + eyz = 0.000000 exz = -0.000000 exy = 0.000000 + + + ********************************************************************** + |maximum component of gradient| : 0.53915131E-04 (atom 1 o ) + gradient norm : 0.97672409E-04 + ********************************************************************** + *** cartesian gradients written onto *** + + + --- calculation of the energy gradient finished --- + + + + ------------------------------------------------------------------------ + total cpu-time : 0.07 seconds + total wall-time : 0.26 seconds + ------------------------------------------------------------------------ + + **** grad : all done **** + + + 2023-01-25 00:20:46.137 + +fine, there is no data group "$actual step" +next step = relax + + statpt (frontal3) : TURBOMOLE rev. V7-6 19 Oct 2021 at 10:10:11 compiled Oct 19th 2021 + Copyright (C) 2021 TURBOMOLE GmbH, Karlsruhe + + + 2023-01-25 00:20:46.289 + + + + this is S T A T P T + + + hessian and coordinate update for + stationary point search + + by barbara unterreiner, marek sierka, + and reinhart ahlrichs + + quantum chemistry group + universitaet karlsruhe + germany + + + + + +--------------------------------------------------+ + | Atomic coordinate, charge and isotop information | + +--------------------------------------------------+ + + atomic coordinates atom charge isotop + 0.00000000 0.00000000 -0.76469392 o 8.000 0 + 1.45675797 0.00000000 0.38234696 h 1.000 0 + -1.45675797 0.00000000 0.38234696 h 1.000 0 + + center of nuclear mass : 0.00000000 0.00000000 -0.63633856 + center of nuclear charge: 0.00000000 0.00000000 -0.53528575 + Keyword $statpt not found - using default options + + *************** Stationary point options ****************** + ************************************************************ + Maximum allowed trust radius: 3.000000E-01 + Minimum allowed trust radius: 1.000000E-03 + Initial trust radius: 1.500000E-01 + GDIIS used if gradient norm < 1.000000E-02 + Number of previous steps for GDIIS: 5 + Hessian update method: BFGS + *** Convergence criteria *** + Threshold for energy change: 1.000000E-06 + Threshold for max displacement element: 1.000000E-03 + Threshold for max gradient element : 1.000000E-03 + Threshold for RMS of displacement: 5.000000E-04 + Threshold for RMS of gradient: 5.000000E-04 + ************************************************************ + + + Keyword $statp missing in file + + Keyword $statpt not found - using default options + Number of symmetry restricted degrees of freedom: 3 + Constituted by: 1 translational degrees of freedom + 0 rotational degrees of freedom + 2 internal degrees of freedom + + ************************************************************************* + ATOM CARTESIAN COORDINATES + 1 o 0.00000000000000 0.00000000000000 -0.76469392436323 + 2 h 1.45675797041144 0.00000000000000 0.38234696218163 + 3 h -1.45675797041144 0.00000000000000 0.38234696218163 + ************************************************************************* + ATOM CARTESIAN GRADIENTS + 1 o 0.00000000000000 0.00000000000000 -0.00005391513101 + 2 h 0.00004202808389 0.00000000000000 0.00003937218872 + 3 h -0.00004202808389 0.00000000000000 0.00003937218872 + ************************************************************************* + + norm of actual CARTESIAN gradient: 9.76724E-05 + norm of actual INTERNAL gradient: 7.39605E-05 + + ENERGY = -76.3449460235 a.u.; # of cycle = 6 + + Approximate Hessian read from $hessapprox data section + + Hessian updated according to BFGS formula + Number of zero Hessian eigenvalues: 0 + FIRST criterion done: 300013105127364. 2 + Number of structures for GDIIS interpolation: 2 + GDIIS step: 0.000154 + + Transforming internal coordinate displacements to Cartesian space + Iteration 1 residual norm 1.535488E-04 + Iteration 2 residual norm 4.431425E-10 + Transformation converged + Residual norm: 4.431425E-10 after 2 iterations + + ****************************************************************** + CONVERGENCE INFORMATION + + Converged? Value Criterion + Energy change yes 0.0000003 0.0000010 + RMS of displacement yes 0.0001086 0.0005000 + RMS of gradient yes 0.0000523 0.0005000 + MAX displacement yes 0.0001534 0.0010000 + MAX gradient yes 0.0000739 0.0010000 + ****************************************************************** + + + ------------------------------------------------------------------------ + total cpu-time : 0.04 seconds + total wall-time : 0.42 seconds + ------------------------------------------------------------------------ + + **** statpt : all done **** + + + 2023-01-25 00:20:46.662 + +fine, there is no data group "$actual step" +next step = dscf + + WARNING : length of argument string +/projects/matgenix/COMMON/software/TURBOMOLE/evaluation_license/TURBOMOLE_76/bin/em64t-unknown-linux-gnu + exceeds 80 characters + argument will be ignored! + + + dscf (frontal3) : TURBOMOLE rev. V7-6 19 Oct 2021 at 10:10:11 compiled Oct 19th 2021 + Copyright (C) 2021 TURBOMOLE GmbH, Karlsruhe + + + 2023-01-25 00:20:46.785 + + + + d s c f - program + + idea & directorship : reinhart ahlrichs + program development : marco haeser + michael baer + dft version : oliver treutler + + + quantum chemistry group + universitaet karlsruhe + germany + + + + *-----------------------------------------------------------------------* + | program will use 1 thread(s) | + *-----------------------------------------------------------------------* + + + +--------------------------------------------------+ + | Atomic coordinate, charge and isotop information | + +--------------------------------------------------+ + + atomic coordinates atom charge isotop + 0.00000000 0.00000000 -0.76464552 o 8.000 0 + 1.45667711 0.00000000 0.38232276 h 1.000 0 + -1.45667711 0.00000000 0.38232276 h 1.000 0 + + center of nuclear mass : 0.00000000 0.00000000 -0.63629828 + center of nuclear charge: 0.00000000 0.00000000 -0.53525187 + + ************************************************************************* + dscf + ************************************************************************* + + + + +--------------------------------------------------+ + | basis set information | + +--------------------------------------------------+ + + we will work with the 1s 3p 5d 7f 9g ... basis set + ...i.e. with spherical basis functions... + + type atoms prim cont basis + --------------------------------------------------------------------------- + o 1 24 14 def-SV(P) [3s2p1d|7s4p1d] + h 2 4 2 def-SV(P) [2s|4s] + --------------------------------------------------------------------------- + total: 3 32 18 + --------------------------------------------------------------------------- + + total number of primitive shells : 16 + total number of contracted shells : 10 + total number of cartesian basis functions : 19 + total number of SCF-basis functions : 18 + + + integral neglect threshold : 0.18E-09 + integral storage threshold THIZE : 0.10E-04 + integral storage threshold THIME : 5 + + + symmetry group of the molecule : c2v + + the group has the following generators : + c2(z) + mirror plane sigma(xz) + + 4 symmetry operations found + + there are 4 real representations : a1 a2 b1 b2 + + maximum number of shells which are related by symmetry : 2 + + + ------------------ + density functional + ------------------ + B-P86 functional + exchange: LDA + Becke (B88) + correlation: LDA (VWN) + Perdew (P86) + + iterations will be done with small grid + + spherical integration : Lebedev's spherical grid + spherical gridsize : 3 + i.e. gridpoints : 302 + value for diffuse not defined + radial integration : Chebyshev 2nd kind (scaling 3) + radial gridsize : 3 + integration cells : 2 + partition function : becke + partition sharpness : 3 + + + ------------------------ + nuclear repulsion energy : 8.97307493283 + ------------------------ + + + ----------------- + -S,T+V- integrals + ----------------- + + 1e-integrals will be neglected if expon. factor < 0.175893E-10 + + Difference densities algorithm switched on. + The maximal number of linear combinations of + difference densities is 20 . + + DIIS switched on: error vector is FDS-SDF + Max. Iterations for DIIS is : 4 + DIIS matrix (see manual) + Scaling factor of diagonals : 1.200 + threshold for scaling factor : 0.000 + + scf convergence criterion : increment of total energy < .1000000D-06 + and increment of one-electron energy < .1000000D-03 + + MOs are in ASCII format ! + + + mo occupation : + irrep mo's occupied + a1 9 3 + a2 1 0 + b1 5 1 + b2 3 1 + + number of basis functions : 18 + number of occupied orbitals : 5 + + + reading orbital data $scfmo from file mos + orbital characterization : scfconv=7 + mo-orthogonalization by Cholesky decomposition + + automatic virtual orbital shift switched on + shift if e(lumo)-e(homo) < 0.10000000 + + + DSCF restart information will be dumped onto file mos + + Overall gridpoints after grid construction = 1099 + + current damping : 0.300 + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 1 -76.344592728074 -122.63133885 37.313671186 0.000D+00 0.175D-09 + Exc = -9.334084106151 N = 9.9990483335 + max. resid. norm for Fia-block= 2.905D-05 for orbital 1b1 + max. resid. fock norm = 3.509D-05 for orbital 4b1 + Delta Eig. = 0.0011377711 eV + + current damping : 0.300 + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 2 -76.344592729464 -122.63178414 37.314116476 0.108D-03 0.111D-09 + Exc = -9.334144339050 N = 9.9990482973 + Norm of current diis error: 0.85215E-04 + max. resid. norm for Fia-block= 1.156D-05 for orbital 1b2 + max. resid. fock norm = 1.580D-05 for orbital 3b1 + Delta Eig. = 0.0011663033 eV + + ENERGY CONVERGED ! + + Evaluating v_xc on big grid + Overall gridpoints after grid construction = 3892 + + current damping : 0.350 + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 3 -76.344946041755 -122.63152257 37.313501598 0.439D-04 0.102D-09 + Exc = -9.334463237883 N = 9.9999975440 + max. resid. norm for Fia-block= 4.113D-06 for orbital 1b1 + max. resid. fock norm = 4.347D-06 for orbital 3a1 + + convergence criteria satisfied after 3 iterations + + + ************************************************************************* + dscf + ************************************************************************* + + + ------------------------------------------ + | total energy = -76.34494604176 | + ------------------------------------------ + : kinetic energy = 75.86405514570 : + : potential energy = -152.20900118746 : + : virial theorem = 1.99370107753 : + : wavefunction norm = 1.00000000000 : + .......................................... + + + orbitals $scfmo will be written to file mos + + irrep 1a1 2a1 3a1 4a1 5a1 + eigenvalues H -18.75772 -0.89480 -0.31126 0.02403 0.59801 + eV -510.4275 -24.3490 -8.4698 0.6540 16.2728 + occupation 2.0000 2.0000 2.0000 + + irrep 6a1 7a1 8a1 9a1 + eigenvalues H 0.87800 1.11556 2.48275 2.82630 + eV 23.8918 30.3562 67.5596 76.9081 + + irrep 1a2 + eigenvalues H 2.50283 + eV 68.1061 + + irrep 1b1 2b1 3b1 4b1 5b1 + eigenvalues H -0.46360 0.10194 0.51639 1.01787 2.96228 + eV -12.6154 2.7739 14.0519 27.6980 80.6084 + occupation 2.0000 + + irrep 1b2 2b2 3b2 + eigenvalues H -0.23262 0.86112 2.53220 + eV -6.3300 23.4325 68.9051 + occupation 2.0000 + + + + + ============================================================================== + electrostatic moments + ============================================================================== + + reference point for electrostatic moments: 0.00000 0.00000 0.00000 + + + nuc elec -> total + ------------------------------------------------------------------------------ + charge + ------------------------------------------------------------------------------ + 10.000000 -10.000000 -0.000000 + + ------------------------------------------------------------------------------ + dipole moment + ------------------------------------------------------------------------------ + x 0.000000 0.000000 0.000000 + y 0.000000 0.000000 0.000000 + z -5.352519 6.196151 0.843632 + + | dipole moment | = 0.8436 a.u. = 2.1443 debye + + ------------------------------------------------------------------------------ + quadrupole moment + ------------------------------------------------------------------------------ + xx 4.243816 -7.488462 -3.244645 + yy 0.000000 -5.314934 -5.314934 + zz 4.969804 -10.350334 -5.380530 + xy 0.000000 0.000000 0.000000 + xz 0.000000 0.000000 0.000000 + yz 0.000000 0.000000 0.000000 + + 1/3 trace= -4.646703 + anisotropy= 2.103854 + + ============================================================================== + +HOMO-LUMO Separation + HOMO : -0.23262048 H = -6.32993 eV + LUMO : 0.02403460 H = +0.65402 eV + HOMO-LUMO gap: 0.25665508 H = +6.98394 eV + + ============================================================================== + + + ------------------------------------------------------------------------ + total cpu-time : 0.09 seconds + total wall-time : 0.68 seconds + ------------------------------------------------------------------------ + + **** dscf : all done **** + + + 2023-01-25 00:20:47.420 + +fine, there is no data group "$actual step" +next step = grad + energy change : actual value = -0.2933E-06 threshold = 0.1000E-05 + geom. gradient : actual value = 0.7390E-04 threshold = 0.1000E-02 + +CONVERGENCY CRITERIA FULFILLED IN CYCLE 6 + diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/jobex/h2o_dscf/ref_output.json b/turbomoleio/testfiles/outputs/TM_v7.6/jobex/h2o_dscf/ref_output.json new file mode 100644 index 0000000..042156f --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/jobex/h2o_dscf/ref_output.json @@ -0,0 +1,397 @@ +{ + "@module": "turbomoleio.output.files", + "@class": "JobexOutput", + "@version": "1.3.0", + "energy": { + "@module": "turbomoleio.output.files", + "@class": "ScfOutput", + "@version": "1.3.0", + "dft": { + "@module": "turbomoleio.output.data", + "@class": "DFTData", + "@version": "1.3.0", + "functional": { + "@module": "turbomoleio.output.data", + "@class": "FunctionalData", + "@version": "1.3.0", + "msg": "B-P86 functional\n exchange: LDA + Becke (B88)\n correlation: LDA (VWN) + Perdew (P86)", + "name": "b-p", + "func_type": "GGA", + "xcfun": null + }, + "ri": null, + "spherical_gridsize": 3, + "gridpoints": 302, + "dispersion_correction": null + }, + "scf": { + "@module": "turbomoleio.output.data", + "@class": "ScfData", + "@version": "1.3.0", + "iterations": { + "@module": "turbomoleio.output.data", + "@class": "ScfIterationData", + "@version": "1.3.0", + "energies": [ + -76.344592728074, + -76.344592729464, + -76.344946041755 + ], + "first_index": 1, + "n_steps": 3, + "dampings": [ + 0.3, + 0.3, + 0.35 + ], + "converged": true + }, + "diis": true, + "diis_error_vect": "FDS-SDF", + "conv_tot_en": 1e-07, + "conv_one_e_en": 0.0001, + "virtual_orbital_shift_on": true, + "virtual_orbital_shift_limit": 0.1, + "orbital_characterization": "scfconv=7", + "restart_file": "mos", + "n_occupied_orbitals": 5 + }, + "energies": { + "@module": "turbomoleio.output.data", + "@class": "ScfEnergiesData", + "@version": "1.3.0", + "total_energy": -76.34494604176, + "kinetic_energy": 75.8640551457, + "potential_energy": -152.20900118746, + "virial_theorem": 1.99370107753, + "wavefunction_norm": 1.0, + "coulomb_energy": null, + "xc_energy": null, + "ts_energy": null, + "free_energy": null, + "sigma0_energy": null + }, + "electrostatic": { + "@module": "turbomoleio.output.data", + "@class": "ElectrostaticMomentsData", + "@version": "1.3.0", + "charge": -0.0, + "unrestricted_electrons": null, + "dipole_vector": [ + 0.0, + 0.0, + 0.843632 + ], + "dipole_norm": 0.8436, + "quadrupole_tensor": [ + [ + -3.244645, + 0.0, + 0.0 + ], + [ + 0.0, + -5.314934, + 0.0 + ], + [ + 0.0, + 0.0, + -5.38053 + ] + ], + "quadrupole_trace": -13.940109, + "quadrupole_anisotropy": 2.103854 + }, + "geometry": { + "@module": "turbomoleio.output.data", + "@class": "GeometryData", + "@version": "1.3.0", + "center_of_mass": [ + 0.0, + 0.0, + -0.63629828 + ], + "center_of_charge": [ + 0.0, + 0.0, + -0.53525187 + ], + "molecule": { + "@module": "pymatgen.core.structure", + "@class": "Molecule", + "charge": 0.0, + "spin_multiplicity": 1, + "sites": [ + { + "name": "O", + "species": [ + { + "element": "O", + "occu": 1 + } + ], + "xyz": [ + 0.0, + 0.0, + -0.40463298360307404 + ], + "properties": {} + }, + { + "name": "H", + "species": [ + { + "element": "H", + "occu": 1 + } + ], + "xyz": [ + 0.7708403302560425, + 0.0, + 0.20231649180153702 + ], + "properties": {} + }, + { + "name": "H", + "species": [ + { + "element": "H", + "occu": 1 + } + ], + "xyz": [ + -0.7708403302560425, + 0.0, + 0.20231649180153702 + ], + "properties": {} + } + ] + } + }, + "basis": { + "@module": "turbomoleio.output.data", + "@class": "BasisData", + "@version": "1.3.0", + "basis_per_specie": { + "o": "def-SV(P)", + "h": "def-SV(P)" + }, + "aux_basis_per_specie": {}, + "number_scf_basis_func": 18, + "number_scf_aux_basis_func": null + }, + "run": { + "@module": "turbomoleio.output.data", + "@class": "RunData", + "@version": "1.3.0", + "host": "frontal3", + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:20:46.785000" + }, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:20:47.420000" + }, + "cpu_time": 0.09, + "wall_time": 0.68 + }, + "tm": { + "@module": "turbomoleio.output.data", + "@class": "TurbomoleData", + "@version": "1.3.0", + "version": "7.6", + "build": null, + "executable": "dscf" + }, + "cosmo": null, + "spin": { + "@module": "turbomoleio.output.data", + "@class": "SpinData", + "@version": "1.3.0", + "unrestricted": false, + "s2": null + }, + "integral": { + "@module": "turbomoleio.output.data", + "@class": "IntegralData", + "@version": "1.3.0", + "integral_neglect_threshold": 1.8e-10, + "thize": 1e-05, + "thime": 5 + }, + "smearing": null, + "symmetry": { + "@module": "turbomoleio.output.data", + "@class": "SymmetryData", + "@version": "1.3.0", + "symbol": "c2v", + "n_reps": 4, + "reps": [ + "a1", + "a2", + "b1", + "b2" + ] + }, + "periodicity": null + }, + "gradient": { + "@module": "turbomoleio.output.files", + "@class": "GradOutput", + "@version": "1.3.0", + "gradients": [ + [ + 0.0, + 0.0, + -5.391513e-05 + ], + [ + 4.202808e-05, + 0.0, + 3.937219e-05 + ], + [ + -4.202808e-05, + 0.0, + 3.937219e-05 + ] + ], + "dielectric": [ + [ + 0.000122, + 0.0, + -0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ], + [ + -0.0, + 0.0, + 7.1e-05 + ] + ], + "run": { + "@module": "turbomoleio.output.data", + "@class": "RunData", + "@version": "1.3.0", + "host": "frontal3", + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:20:45.925000" + }, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:20:46.137000" + }, + "cpu_time": 0.07, + "wall_time": 0.26 + }, + "tm": { + "@module": "turbomoleio.output.data", + "@class": "TurbomoleData", + "@version": "1.3.0", + "version": "7.6", + "build": null, + "executable": "grad" + }, + "memory": null + }, + "relax": { + "@module": "turbomoleio.output.files", + "@class": "StatptOutput", + "@version": "1.3.0", + "info": { + "@module": "turbomoleio.output.data", + "@class": "StatptData", + "@version": "1.3.0", + "max_trust_radius": 0.3, + "min_trust_radius": 0.001, + "init_trust_radius": 0.15, + "min_grad_norm_for_gdiis": 0.01, + "prev_steps_for_gdiis": 5, + "hessian_update_method": "BFGS", + "thr_energy_change": 1e-06, + "thr_max_displ": 0.001, + "thr_max_grad": 0.001, + "thr_rms_displ": 0.0005, + "thr_rms_grad": 0.0005, + "use_defaults": true, + "final_step_radius": null + }, + "gradients": { + "@module": "turbomoleio.output.data", + "@class": "RelaxGradientsData", + "@version": "1.3.0", + "norm_cartesian": 9.76724e-05, + "norm_internal": 7.39605e-05, + "max_internal": null + }, + "convergence": { + "@module": "turbomoleio.output.data", + "@class": "RelaxConvergenceData", + "@version": "1.3.0", + "energy_change": { + "value": 3e-07, + "thr": 1e-06, + "conv": true + }, + "rms_displ": { + "value": 0.0001086, + "thr": 0.0005, + "conv": true + }, + "max_displ": { + "value": 0.0001534, + "thr": 0.001, + "conv": true + }, + "rms_grad": { + "value": 5.23e-05, + "thr": 0.0005, + "conv": true + }, + "max_grad": { + "value": 7.39e-05, + "thr": 0.001, + "conv": true + } + }, + "run": { + "@module": "turbomoleio.output.data", + "@class": "RunData", + "@version": "1.3.0", + "host": "frontal3", + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:20:46.289000" + }, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:20:46.662000" + }, + "cpu_time": 0.04, + "wall_time": 0.42 + }, + "tm": { + "@module": "turbomoleio.output.data", + "@class": "TurbomoleData", + "@version": "1.3.0", + "version": "7.6", + "build": null, + "executable": "statpt" + } + } +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/jobex/h2o_dscf/ref_parser.json b/turbomoleio/testfiles/outputs/TM_v7.6/jobex/h2o_dscf/ref_parser.json new file mode 100644 index 0000000..4152274 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/jobex/h2o_dscf/ref_parser.json @@ -0,0 +1,271 @@ +{ + "all_done": true, + "header": { + "executable": "grad", + "host": "frontal3", + "tm_version": "7.6", + "tm_build": null, + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:20:45.925000" + } + }, + "centers": { + "center_of_mass": [ + 0.0, + 0.0, + -0.63633856 + ], + "center_of_charge": [ + 0.0, + 0.0, + -0.53528575 + ] + }, + "coordinates": { + "coords": [ + [ + 0.0, + 0.0, + -0.76469392 + ], + [ + 1.45675797, + 0.0, + 0.38234696 + ], + [ + -1.45675797, + 0.0, + 0.38234696 + ] + ], + "species": [ + "o", + "h", + "h" + ], + "charges": [ + 8.0, + 1.0, + 1.0 + ], + "isotopes": [ + 0, + 0, + 0 + ] + }, + "basis": { + "basis_per_specie": { + "o": "def-SV(P)", + "h": "def-SV(P)" + }, + "aux_basis_per_specie": {}, + "number_scf_basis_func": 18, + "number_scf_aux_basis_func": null + }, + "symmetry": { + "symbol": "c2v", + "n_reps": 4, + "reps": [ + "a1", + "a2", + "b1", + "b2" + ] + }, + "cosmo_header": null, + "density_functional_data": { + "functional_msg": "B-P86 functional\n exchange: LDA + Becke (B88)\n correlation: LDA (VWN) + Perdew (P86)", + "functional_name": "b-p", + "functional_type": "GGA", + "xcfun": null, + "spherical_gridsize": 3, + "gridpoints": 302 + }, + "rij_info": null, + "dftd": null, + "pre_scf_run": { + "diis": true, + "diis_error_vect": "FDS-SDF", + "conv_tot_en": 1e-07, + "conv_one_e_en": 0.0001, + "virtual_orbital_shift_on": true, + "virtual_orbital_shift_limit": 0.1, + "orbital_characterization": "scfconv=7", + "restart_file": "mos", + "n_occupied_orbitals": 5 + }, + "scf_iterations": { + "energies": [ + -76.344592728074, + -76.344592729464, + -76.344946041755 + ], + "first_index": 1, + "n_steps": 3, + "dampings": [ + 0.3, + 0.3, + 0.35 + ], + "converged": true + }, + "scf_energies": { + "total_energy": -76.34494604176, + "kinetic_energy": 75.8640551457, + "potential_energy": -152.20900118746, + "virial_theorem": 1.99370107753, + "wavefunction_norm": 1.0 + }, + "cosmo_results": null, + "electrostatic_moments": { + "unrestricted_electrons": null, + "charge": -0.0, + "dipole": { + "norm": 0.8436, + "moment": [ + 0.0, + 0.0, + 0.843632 + ] + }, + "quadrupole": { + "trace": -13.940109, + "anisotropy": 2.103854, + "moment": [ + [ + -3.244645, + 0.0, + 0.0 + ], + [ + 0.0, + -5.314934, + 0.0 + ], + [ + 0.0, + 0.0, + -5.38053 + ] + ] + } + }, + "timings": { + "cpu_time": 0.07, + "wall_time": 0.26, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:20:46.137000" + } + }, + "s2": null, + "is_uhf": false, + "fermi": null, + "integral": { + "integral_neglect_threshold": 1.8e-10, + "thize": 1e-05, + "thime": 5 + }, + "pre_escf_run": null, + "escf_iterations": null, + "escf_gs_total_en": null, + "escf_excitations": null, + "rdgrad_memory": null, + "gradient": { + "gradients": [ + [ + 0.0, + 0.0, + -5.391513e-05 + ], + [ + 4.202808e-05, + 0.0, + 3.937219e-05 + ], + [ + -4.202808e-05, + 0.0, + 3.937219e-05 + ] + ], + "dielectric": [ + [ + 0.000122, + 0.0, + -0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ], + [ + -0.0, + 0.0, + 7.1e-05 + ] + ] + }, + "egrad_excited_state": null, + "statpt_info": { + "max_trust_radius": 0.3, + "min_trust_radius": 0.001, + "init_trust_radius": 0.15, + "min_grad_norm_for_gdiis": 0.01, + "prev_steps_for_gdiis": 5, + "hessian_update_method": "BFGS", + "thr_energy_change": 1e-06, + "thr_max_displ": 0.001, + "thr_max_grad": 0.001, + "thr_rms_displ": 0.0005, + "thr_rms_grad": 0.0005, + "use_defaults": true, + "final_step_radius": null + }, + "relax_info": null, + "relax_gradient_values": { + "norm_cartesian": 9.76724e-05, + "norm_internal": 7.39605e-05, + "max_internal": null + }, + "relax_conv_info": { + "energy_change": { + "value": 3e-07, + "thr": 1e-06, + "conv": true + }, + "rms_displ": { + "value": 0.0001086, + "thr": 0.0005, + "conv": true + }, + "rms_grad": { + "value": 5.23e-05, + "thr": 0.0005, + "conv": true + }, + "max_displ": { + "value": 0.0001534, + "thr": 0.001, + "conv": true + }, + "max_grad": { + "value": 7.39e-05, + "thr": 0.001, + "conv": true + } + }, + "aoforce_numerical_integration": null, + "aoforce_analysis": null, + "mp2_results": { + "energy": null + }, + "riper_scf_energies": null, + "periodicity_data": null +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/jobex/h2o_mp2_dscf_mpgrad/job.last b/turbomoleio/testfiles/outputs/TM_v7.6/jobex/h2o_mp2_dscf_mpgrad/job.last new file mode 100644 index 0000000..9682662 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/jobex/h2o_mp2_dscf_mpgrad/job.last @@ -0,0 +1,735 @@ + +OPTIMIZATION CYCLE 5 +mer 25 gen 2023, 00.21.06, CET + + statpt (frontal3) : TURBOMOLE rev. V7-6 19 Oct 2021 at 10:10:11 compiled Oct 19th 2021 + Copyright (C) 2021 TURBOMOLE GmbH, Karlsruhe + + + 2023-01-25 00:21:06.518 + + + + this is S T A T P T + + + hessian and coordinate update for + stationary point search + + by barbara unterreiner, marek sierka, + and reinhart ahlrichs + + quantum chemistry group + universitaet karlsruhe + germany + + + + + +--------------------------------------------------+ + | Atomic coordinate, charge and isotop information | + +--------------------------------------------------+ + + atomic coordinates atom charge isotop + 0.00000000 0.00000000 -0.74138490 o 8.000 0 + 1.45624155 0.00000000 0.37069245 h 1.000 0 + -1.45624155 0.00000000 0.37069245 h 1.000 0 + + center of nuclear mass : 0.00000000 0.00000000 -0.61694200 + center of nuclear charge: 0.00000000 0.00000000 -0.51896943 + Keyword $statpt not found - using default options + + *************** Stationary point options ****************** + ************************************************************ + Maximum allowed trust radius: 3.000000E-01 + Minimum allowed trust radius: 1.000000E-03 + Initial trust radius: 1.500000E-01 + GDIIS used if gradient norm < 1.000000E-02 + Number of previous steps for GDIIS: 5 + Hessian update method: BFGS + *** Convergence criteria *** + Threshold for energy change: 1.000000E-06 + Threshold for max displacement element: 1.000000E-03 + Threshold for max gradient element : 1.000000E-03 + Threshold for RMS of displacement: 5.000000E-04 + Threshold for RMS of gradient: 5.000000E-04 + ************************************************************ + + + Keyword $statp missing in file + + Keyword $statpt not found - using default options + Number of symmetry restricted degrees of freedom: 3 + Constituted by: 1 translational degrees of freedom + 0 rotational degrees of freedom + 2 internal degrees of freedom + + ************************************************************************* + ATOM CARTESIAN COORDINATES + 1 o 0.00000000000000 0.00000000000000 -0.74138490104515 + 2 h 1.45624155332485 0.00000000000000 0.37069245052257 + 3 h -1.45624155332485 0.00000000000000 0.37069245052257 + ************************************************************************* + ATOM CARTESIAN GRADIENTS + 1 o 0.00000000000000 0.00000000000000 -0.00002403335253 + 2 h 0.00006903708529 0.00000000000000 0.00001201664361 + 3 h -0.00006903708529 0.00000000000000 0.00001201664361 + ************************************************************************* + + norm of actual CARTESIAN gradient: 1.01974E-04 + norm of actual INTERNAL gradient: 1.06026E-04 + + ENERGY = -76.1286484093 a.u.; # of cycle = 5 + + Approximate Hessian read from $hessapprox data section + + Hessian updated according to BFGS formula + Number of zero Hessian eigenvalues: 0 + Number of structures for GDIIS interpolation: 3 + GDIIS step: 0.000295 + + Transforming internal coordinate displacements to Cartesian space + Iteration 1 residual norm 2.949234E-04 + Iteration 2 residual norm 2.808247E-08 + Iteration 3 residual norm 4.965068E-16 + Transformation converged + Residual norm: 4.965068E-16 after 3 iterations + + ****************************************************************** + CONVERGENCE INFORMATION + + Converged? Value Criterion + Energy change yes 0.0000002 0.0000010 + RMS of displacement yes 0.0002085 0.0005000 + RMS of gradient yes 0.0000750 0.0005000 + MAX displacement yes 0.0002933 0.0010000 + MAX gradient yes 0.0000879 0.0010000 + ****************************************************************** + + + ------------------------------------------------------------------------ + total cpu-time : 0.04 seconds + total wall-time : 0.26 seconds + ------------------------------------------------------------------------ + + **** statpt : all done **** + + + 2023-01-25 00:21:06.748 + +fine, there is no data group "$actual step" +next step = dscf + + WARNING : length of argument string +/projects/matgenix/COMMON/software/TURBOMOLE/evaluation_license/TURBOMOLE_76/bin/em64t-unknown-linux-gnu + exceeds 80 characters + argument will be ignored! + + + dscf (frontal3) : TURBOMOLE rev. V7-6 19 Oct 2021 at 10:10:11 compiled Oct 19th 2021 + Copyright (C) 2021 TURBOMOLE GmbH, Karlsruhe + + + 2023-01-25 00:21:06.864 + + + + d s c f - program + + idea & directorship : reinhart ahlrichs + program development : marco haeser + michael baer + dft version : oliver treutler + + + quantum chemistry group + universitaet karlsruhe + germany + + + + *-----------------------------------------------------------------------* + | program will use 1 thread(s) | + *-----------------------------------------------------------------------* + + + +--------------------------------------------------+ + | Atomic coordinate, charge and isotop information | + +--------------------------------------------------+ + + atomic coordinates atom charge isotop + 0.00000000 0.00000000 -0.74151839 o 8.000 0 + 1.45606104 0.00000000 0.37075920 h 1.000 0 + -1.45606104 0.00000000 0.37075920 h 1.000 0 + + center of nuclear mass : 0.00000000 0.00000000 -0.61705308 + center of nuclear charge: 0.00000000 0.00000000 -0.51906287 + + ************************************************************************* + jobex_mp2_dscf_mpgrad + ************************************************************************* + + + + +--------------------------------------------------+ + | basis set information | + +--------------------------------------------------+ + + we will work with the 1s 3p 5d 7f 9g ... basis set + ...i.e. with spherical basis functions... + + type atoms prim cont basis + --------------------------------------------------------------------------- + o 1 24 14 def-SV(P) [3s2p1d|7s4p1d] + h 2 4 2 def-SV(P) [2s|4s] + --------------------------------------------------------------------------- + total: 3 32 18 + --------------------------------------------------------------------------- + + total number of primitive shells : 16 + total number of contracted shells : 10 + total number of cartesian basis functions : 19 + total number of SCF-basis functions : 18 + + + integral neglect threshold : 0.18E-09 + integral storage threshold THIZE : 0.10E-04 + integral storage threshold THIME : 5 + + + DENSITY CONVERGENCE CHECK SWITCHED ON ! + SCF CONVERGENCE IF RMS(delta[D]) < 0.1000000000E-06 + + + symmetry group of the molecule : c2v + + the group has the following generators : + c2(z) + mirror plane sigma(xz) + + 4 symmetry operations found + + there are 4 real representations : a1 a2 b1 b2 + + maximum number of shells which are related by symmetry : 2 + + + ------------------------ + nuclear repulsion energy : 9.07564926557 + ------------------------ + + + ----------------- + -S,T+V- integrals + ----------------- + + 1e-integrals will be neglected if expon. factor < 0.175893E-10 + + Difference densities algorithm switched on. + The maximal number of linear combinations of + difference densities is 20 . + + DIIS switched on: error vector is FDS-SDF + Max. Iterations for DIIS is : 5 + DIIS matrix (see manual) + Scaling factor of diagonals : 1.200 + threshold for scaling factor : 0.000 + + scf convergence criterion : increment of total energy < .1000000D-06 + and increment of one-electron energy < .1000000D-03 + + MOs are in ASCII format ! + + + mo occupation : + irrep mo's occupied + a1 9 3 + a2 1 0 + b1 5 1 + b2 3 1 + + number of basis functions : 18 + number of occupied orbitals : 5 + + + reading orbital data $scfmo from file mos + orbital characterization : scfconv=7 + mo-orthogonalization by Cholesky decomposition + + automatic virtual orbital shift switched on + shift if e(lumo)-e(homo) < 0.10000000 + + + DSCF restart information will be dumped onto file mos + + + current damping : 0.300 + ITERATION ENERGY 1e-ENERGY 2e-ENERGY RMS[dD(SAO)] TOL + 1 -75.937701281859 -122.75559382 37.742243269 0.000D+00 0.175D-09 + max. resid. norm for Fia-block= 4.330D-05 for orbital 3a1 + max. resid. fock norm = 1.444D-04 for orbital 8a1 + Delta Eig. = 0.0022382071 eV + + current damping : 0.300 + ITERATION ENERGY 1e-ENERGY 2e-ENERGY RMS[dD(SAO)] TOL + 2 -75.937701285158 -122.75560099 37.742250437 0.111D-04 0.111D-09 + Norm of current diis error: 0.45962E-04 + max. resid. norm for Fia-block= 1.886D-05 for orbital 3a1 + max. resid. fock norm = 3.520D-05 for orbital 8a1 + Delta Eig. = 0.0006094443 eV + + ENERGY & DENSITY CONVERGED ! + + + current damping : 0.350 + ITERATION ENERGY 1e-ENERGY 2e-ENERGY RMS[dD(SAO)] TOL + 3 -75.937701285808 -122.75559614 37.742245589 0.532D-05 0.844D-10 + max. resid. norm for Fia-block= 6.142D-06 for orbital 3a1 + max. resid. fock norm = 8.258D-06 for orbital 8a1 + + convergence criteria satisfied after 3 iterations + + + ************************************************************************* + jobex_mp2_dscf_mpgrad + ************************************************************************* + + + ------------------------------------------ + | total energy = -75.93770128581 | + ------------------------------------------ + : kinetic energy = 75.83505268131 : + : potential energy = -151.77275396712 : + : virial theorem = 1.99864825241 : + : wavefunction norm = 1.00000000000 : + .......................................... + + + orbitals $scfmo will be written to file mos + + irrep 1a1 2a1 3a1 4a1 5a1 + eigenvalues H -20.54478 -1.31774 -0.56734 0.17142 0.91189 + eV -559.0564 -35.8578 -15.4384 4.6646 24.8141 + occupation 2.0000 2.0000 2.0000 + + irrep 6a1 7a1 8a1 9a1 + eigenvalues H 1.20751 1.43716 2.92722 3.30297 + eV 32.8582 39.1074 79.6543 89.8790 + + irrep 1a2 + eigenvalues H 2.93977 + eV 79.9957 + + irrep 1b1 2b1 3b1 4b1 5b1 + eigenvalues H -0.70465 0.25190 0.80236 1.38266 3.46157 + eV -19.1745 6.8546 21.8334 37.6243 94.1948 + occupation 2.0000 + + irrep 1b2 2b2 3b2 + eigenvalues H -0.50104 1.19873 2.96776 + eV -13.6341 32.6195 80.7576 + occupation 2.0000 + + + + + ============================================================================== + electrostatic moments + ============================================================================== + + reference point for electrostatic moments: 0.00000 0.00000 0.00000 + + + nuc elec -> total + ------------------------------------------------------------------------------ + charge + ------------------------------------------------------------------------------ + 10.000000 -10.000000 0.000000 + + ------------------------------------------------------------------------------ + dipole moment + ------------------------------------------------------------------------------ + x 0.000000 0.000000 0.000000 + y 0.000000 0.000000 0.000000 + z -5.190629 6.085533 0.894905 + + | dipole moment | = 0.8949 a.u. = 2.2746 debye + + ------------------------------------------------------------------------------ + quadrupole moment + ------------------------------------------------------------------------------ + xx 4.240228 -7.337066 -3.096838 + yy 0.000000 -5.330547 -5.330547 + zz 4.673721 -10.093564 -5.419843 + xy 0.000000 0.000000 0.000000 + xz 0.000000 -0.000000 -0.000000 + yz 0.000000 0.000000 0.000000 + + 1/3 trace= -4.615743 + anisotropy= 2.279668 + + ============================================================================== + +HOMO-LUMO Separation + HOMO : -0.50103940 H = -13.63398 eV + LUMO : 0.17141810 H = +4.66453 eV + HOMO-LUMO gap: 0.67245751 H = +18.29851 eV + + ============================================================================== + + + ------------------------------------------------------------------------ + total cpu-time : 0.07 seconds + total wall-time : 0.51 seconds + ------------------------------------------------------------------------ + + **** dscf : all done **** + + + 2023-01-25 00:21:07.342 + +fine, there is no data group "$actual step" +next step = mpgrad + + WARNING : length of argument string +/projects/matgenix/COMMON/software/TURBOMOLE/evaluation_license/TURBOMOLE_76/bin/em64t-unknown-linux-gnu + exceeds 80 characters + argument will be ignored! + + + mpgrad (frontal3) : TURBOMOLE rev. V7-6 19 Oct 2021 at 10:10:11 compiled Oct 19th 2021 + Copyright (C) 2021 TURBOMOLE GmbH, Karlsruhe + + + 2023-01-25 00:21:07.457 + + + + m p g r a d - program + + F.Haase & R.Ahlrichs (JCompChem 14(1993)907) + restructured and UMP2 added: M.Kollwitz (1995/6) + parallel version: G.Corongiu (1997) + symmetry: M.Haeser,J.Almloef,M.Feyereisen (TCA 79(1991)115) + energy: R.Ahlrichs,M.Baer,M.Haeser,H.Horn,C.Koelmel (CPL 162(1989)165) + + quantum chemistry group + university karlsruhe + germany + + + you specified 11 scratch files in the control file + + + +--------------------------------------------------+ + | Atomic coordinate, charge and isotop information | + +--------------------------------------------------+ + + atomic coordinates atom charge isotop + 0.00000000 0.00000000 -0.74151839 o 8.000 0 + 1.45606104 0.00000000 0.37075920 h 1.000 0 + -1.45606104 0.00000000 0.37075920 h 1.000 0 + + center of nuclear mass : 0.00000000 0.00000000 -0.61705308 + center of nuclear charge: 0.00000000 0.00000000 -0.51906287 + + +--------------------------------------------------+ + | basis set information | + +--------------------------------------------------+ + + we will work with the 1s 3p 5d 7f 9g ... basis set + ...i.e. with spherical basis functions... + + type atoms prim cont basis + --------------------------------------------------------------------------- + o 1 24 14 def-SV(P) [3s2p1d|7s4p1d] + h 2 4 2 def-SV(P) [2s|4s] + --------------------------------------------------------------------------- + total: 3 32 18 + --------------------------------------------------------------------------- + + total number of primitive shells : 16 + total number of contracted shells : 10 + total number of cartesian basis functions : 19 + total number of SCF-basis functions : 18 + + + MAXIMUM CORE MEMORY WHICH CAN BE ALLOCATED DYNAMICALLY = 500 Mbytes + ( or 65536000 double words ) + + + symmetry group of the molecule : c2v + + the group has the following generators : + c2(z) + mirror plane sigma(xz) + + 4 symmetry operations found + + there are 4 real representations : a1 a2 b1 b2 + + maximum number of shells which are related by symmetry : 2 + + + determining totally symmetric integral contributions + - equivalent to irreducible tensor elements - + which can be formed within each quadruple of representations : + + representation quadruple contributions + + 1 1 a1 a1 a1 a1 1 + 2 2 a2 a2 a1 a1 1 + 3 3 a2 a2 a2 a2 1 + 4 4 b1 b1 a1 a1 1 + 5 5 b1 b1 a2 a2 1 + 6 6 b1 b1 b1 b1 1 + 7 7 b2 b1 a2 a1 1 + 8 8 b2 b2 a1 a1 1 + 9 9 b2 b2 a2 a2 1 + 10 10 b2 b2 b1 b1 1 + 11 11 b2 b2 b2 b2 1 + + + total number of totally symmetric contributions : 11 + total number of non-equal integral types : 11 + total number of non-zero integral types : 11 + t.number of mat.elements of symmetrizing projectors: 11 + total number of back-transformation matrix elements: 11 + + mo occupation : + irrep mo's occupied + a1 9 3 + a2 1 0 + b1 5 1 + b2 3 1 + + number of basis functions : 18 + number of occupied orbitals : 5 + + MOs are in ASCII format ! + + + reading orbital data $scfmo from file mos + orbital characterization : scfconv=7 + time elapsed for calculating density matrices : 0.001 sec + + + number of non-frozen orbitals : 18 + number of non-frozen occupied orbitals : 5 + + setting up bound for integral derivative estimation + + increment for numerical differentiation : 0.00050000 + + biggest AO integral is expected to be 4.776656448 + biggest cartesian 1st derivative AO integral is expected to be 8.648821438 + sqrt of biggest ao-integral is expected to be 2.1855563 + + number of basis function pairs which contribute + to half-transformed integrals is expected to be : 156 + iloop= 1 + + MULTIPLE PASS Statistics + ---------------------------------------------------- + pass irrep lambda batch : MO to MO + ---------------------------------------------------- + 1 1 -> 4 1 -> 1 1 -> 5 + + + ************************************************************** + RESULTING NUMBER OF INTEGRAL AND DERIVATIVE EVALUATIONS 1 + ************************************************************** + + number of basis function pairs which contribute + to 1st half-transformation of T2 amplitudes : 177 + to 2nd half-transformation of T2 amplitudes : 139 + + + ----------------------------------------------- + PASS : 1 + ----------------------------------------------- + + record length scale factor = 8 + + + actual number of basis function pairs which contr. + to half-transformed integrals is : 156 + + cpu for first half-transformation 0.05 s + + cpu for second half-transformation 0.00 s + + cpu for calculation of T2-amplitudes 0.00 s + + cpu to increment the relaxed densities 0.00 s + + cpu to increment the L-Matrix (3-ext.) 0.00 s + + cpu to increment the L-Matrix (1-ext.) 0.00 s + + cpu for first T2 half transformation 0.00 s + + cpu to increment the 2e-gradient 0.02 s + + Largest euclidian normes of T2 (for fixed ij) + --------------------------------------------- + [ i j ] norm[ T2(ij) ] + --------------------------------------------- + 4 3 0.09184923863211 + 5 3 0.08866339373909 + 5 4 0.08790964899938 + 4 4 0.07308212696807 + 3 3 0.06649069884717 + + + Largest T2 amplitudes + --------------------------------------------- + [ i j a b ] T2(ij,ab) + --------------------------------------------- + 5 3 8 17 0.06062905985224 + 5 4 15 17 0.04855030161798 + 5 5 17 17 0.04719788559563 + 5 4 13 17 0.04432095905248 + 4 3 8 15 0.04202593074365 + + + ***************************************************** + * * + * SCF-energy : -75.93770128580999 * + * MP2-energy : -0.19094710168818 * + * total : -76.12864838749817 * + * * + * (MP2-energy evaluated from T2 amplitudes) * + * * + ***************************************************** + + +--------------------------------------------------------------------------- + trace of occupied-occupied block of relaxed density : -0.095686779713110 + trace of virtual-virtual block of relaxed density : 0.095686779713110 +--------------------------------------------------------------------------- + +------------------------------------------------------------ + cpu needed for calculation of 2e-fock term 0.01 sec. +------------------------------------------------------------ + + ------------------------------------------------- + -CPHF- contribution to MP2-Gradient via Z-vector + ------------------------------------------------- + + Requested convergence is 0.1000000000E-11 RMS + + iteration : 1 convergence : 0.4301263602E-03 + iteration : 2 convergence : 0.6235015035E-04 + iteration : 3 convergence : 0.4718727158E-06 + iteration : 4 convergence : 0.9245049333E-08 + iteration : 5 convergence : 0.4214255757E-09 + iteration : 6 convergence : 0.2812768996E-11 + iteration : 7 convergence : 0.2023539801E-13 + + *** the iterative expansion of z(ai) converged after 7 iterations *** +---------------------------------------------------------------------- + cpu needed for solving the linear equation for z-vector 0.01 sec. +---------------------------------------------------------------------- + +------------------------------------------------------------ + cpu needed for calculation of 2e-fock term 0.00 sec. +------------------------------------------------------------ + + 2e-integral 1st. derivatives will be neglected if expon. factor < 0.100000E-06 + outer boundary for 2e-integral derivative neglection is 0.500000E-07 + + + cpu to increment the 2e-gradient 0.01 s + + 1e-integral 1st. derivatives will be neglected if expon. factor < 0.100000E-10 + +--------------------------------------------------------------------------- + cpu needed for calculation of the 1-electron contributions 0.00 sec. +--------------------------------------------------------------------------- + + ------------------------------ + total gradient of MP2-energy + ------------------------------ + + ------------------------------------------------ + cartesian gradient of the energy (hartree/bohr) + ------------------------------------------------ + + ATOM 1 o 2 h 3 h +dE/dx 0.0000000D+00 0.3603375D-04 -0.3603375D-04 +dE/dy 0.0000000D+00 0.0000000D+00 0.0000000D+00 +dE/dz -0.4518115D-04 0.2259054D-04 0.2259054D-04 + + resulting FORCE (fx,fy,fz) = (0.000D+00,0.000D+00,-.654D-10) + resulting MOMENT (mx,my,mz) = (0.000D+00,0.000D+00,0.000D+00) + + + exx = 0.000105 eyy = 0.000000 ezz = 0.000050 + eyz = 0.000000 exz = 0.000000 exy = 0.000000 + + + ********************************************************************** + |maximum component of gradient| : 0.45181147E-04 (atom 1 o ) + gradient norm : 0.75225416E-04 + ********************************************************************** + *** cartesian gradients written onto *** + + + + ============================================================================== + electrostatic moments + ============================================================================== + + reference point for electrostatic moments: 0.00000 0.00000 0.00000 + + + nuc SCF,e -> SCF,tot MP2 -> total + ------------------------------------------------------------------------------ + charge + ------------------------------------------------------------------------------ + 10.000000 -10.000000 0.000000 -0.000000 0.000000 + + ------------------------------------------------------------------------------ + dipole moment + ------------------------------------------------------------------------------ + x 0.000000 -0.000000 -0.000000 0.000000 -0.000000 + y 0.000000 0.000000 0.000000 0.000000 0.000000 + z -5.190629 6.085533 0.894905 -0.009568 0.885337 + + | dipole moment | = 0.8853 a.u. = 2.2503 debye + + ------------------------------------------------------------------------------ + quadrupole moment + ------------------------------------------------------------------------------ + xx 4.240228 -7.337066 -3.096838 -0.069565 -3.166404 + yy 0.000000 -5.330547 -5.330547 -0.049562 -5.380108 + zz 4.673721 -10.093564 -5.419843 -0.041062 -5.460905 + xy 0.000000 0.000000 0.000000 -0.000000 -0.000000 + xz 0.000000 -0.000000 -0.000000 0.000000 -0.000000 + yz 0.000000 0.000000 0.000000 0.000000 0.000000 + + 1/3 trace= -4.669139 + anisotropy= 2.255189 + + ============================================================================== + + + + ------------------------------------------------------------------------ + total cpu-time : 0.13 seconds + total wall-time : 0.98 seconds + ------------------------------------------------------------------------ + + **** mpgrad : all done **** + + + 2023-01-25 00:21:08.390 + +fine, there is no data group "$actual step" +next step = relax + energy change : actual value = -0.2302E-06 threshold = 0.1000E-05 + geom. gradient : actual value = 0.8791E-04 threshold = 0.1000E-02 + +CONVERGENCY CRITERIA FULFILLED IN CYCLE 5 + diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/jobex/h2o_mp2_dscf_mpgrad/ref_output.json b/turbomoleio/testfiles/outputs/TM_v7.6/jobex/h2o_mp2_dscf_mpgrad/ref_output.json new file mode 100644 index 0000000..574ae6a --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/jobex/h2o_mp2_dscf_mpgrad/ref_output.json @@ -0,0 +1,446 @@ +{ + "@module": "turbomoleio.output.files", + "@class": "JobexOutput", + "@version": "1.3.0", + "energy": { + "@module": "turbomoleio.output.files", + "@class": "ScfOutput", + "@version": "1.3.0", + "dft": null, + "scf": { + "@module": "turbomoleio.output.data", + "@class": "ScfData", + "@version": "1.3.0", + "iterations": { + "@module": "turbomoleio.output.data", + "@class": "ScfIterationData", + "@version": "1.3.0", + "energies": [ + -75.937701281859, + -75.937701285158, + -75.937701285808 + ], + "first_index": 1, + "n_steps": 3, + "dampings": [ + 0.3, + 0.3, + 0.35 + ], + "converged": true + }, + "diis": true, + "diis_error_vect": "FDS-SDF", + "conv_tot_en": 1e-07, + "conv_one_e_en": 0.0001, + "virtual_orbital_shift_on": true, + "virtual_orbital_shift_limit": 0.1, + "orbital_characterization": "scfconv=7", + "restart_file": "mos", + "n_occupied_orbitals": 5 + }, + "energies": { + "@module": "turbomoleio.output.data", + "@class": "ScfEnergiesData", + "@version": "1.3.0", + "total_energy": -75.93770128581, + "kinetic_energy": 75.83505268131, + "potential_energy": -151.77275396712, + "virial_theorem": 1.99864825241, + "wavefunction_norm": 1.0, + "coulomb_energy": null, + "xc_energy": null, + "ts_energy": null, + "free_energy": null, + "sigma0_energy": null + }, + "electrostatic": { + "@module": "turbomoleio.output.data", + "@class": "ElectrostaticMomentsData", + "@version": "1.3.0", + "charge": 0.0, + "unrestricted_electrons": null, + "dipole_vector": [ + 0.0, + 0.0, + 0.894905 + ], + "dipole_norm": 0.8949, + "quadrupole_tensor": [ + [ + -3.096838, + 0.0, + -0.0 + ], + [ + 0.0, + -5.330547, + 0.0 + ], + [ + -0.0, + 0.0, + -5.419843 + ] + ], + "quadrupole_trace": -13.847229, + "quadrupole_anisotropy": 2.279668 + }, + "geometry": { + "@module": "turbomoleio.output.data", + "@class": "GeometryData", + "@version": "1.3.0", + "center_of_mass": [ + 0.0, + 0.0, + -0.61705308 + ], + "center_of_charge": [ + 0.0, + 0.0, + -0.51906287 + ], + "molecule": { + "@module": "pymatgen.core.structure", + "@class": "Molecule", + "charge": 0.0, + "spin_multiplicity": 1, + "sites": [ + { + "name": "O", + "species": [ + { + "element": "O", + "occu": 1 + } + ], + "xyz": [ + 0.0, + 0.0, + -0.39239463345348297 + ], + "properties": {} + }, + { + "name": "H", + "species": [ + { + "element": "H", + "occu": 1 + } + ], + "xyz": [ + 0.7705143200517215, + 0.0, + 0.19619731937262755 + ], + "properties": {} + }, + { + "name": "H", + "species": [ + { + "element": "H", + "occu": 1 + } + ], + "xyz": [ + -0.7705143200517215, + 0.0, + 0.19619731937262755 + ], + "properties": {} + } + ] + } + }, + "basis": { + "@module": "turbomoleio.output.data", + "@class": "BasisData", + "@version": "1.3.0", + "basis_per_specie": { + "o": "def-SV(P)", + "h": "def-SV(P)" + }, + "aux_basis_per_specie": {}, + "number_scf_basis_func": 18, + "number_scf_aux_basis_func": null + }, + "run": { + "@module": "turbomoleio.output.data", + "@class": "RunData", + "@version": "1.3.0", + "host": "frontal3", + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:21:06.864000" + }, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:21:07.342000" + }, + "cpu_time": 0.07, + "wall_time": 0.51 + }, + "tm": { + "@module": "turbomoleio.output.data", + "@class": "TurbomoleData", + "@version": "1.3.0", + "version": "7.6", + "build": null, + "executable": "dscf" + }, + "cosmo": null, + "spin": { + "@module": "turbomoleio.output.data", + "@class": "SpinData", + "@version": "1.3.0", + "unrestricted": false, + "s2": null + }, + "integral": { + "@module": "turbomoleio.output.data", + "@class": "IntegralData", + "@version": "1.3.0", + "integral_neglect_threshold": 1.8e-10, + "thize": 1e-05, + "thime": 5 + }, + "smearing": null, + "symmetry": { + "@module": "turbomoleio.output.data", + "@class": "SymmetryData", + "@version": "1.3.0", + "symbol": "c2v", + "n_reps": 4, + "reps": [ + "a1", + "a2", + "b1", + "b2" + ] + }, + "periodicity": null + }, + "gradient": { + "@module": "turbomoleio.output.files", + "@class": "MP2Output", + "@version": "1.3.0", + "info": null, + "results": { + "@module": "turbomoleio.output.data", + "@class": "MP2Results", + "@version": "1.3.0", + "energy": -76.12864838749817 + }, + "geometry": { + "@module": "turbomoleio.output.data", + "@class": "GeometryData", + "@version": "1.3.0", + "center_of_mass": [ + 0.0, + 0.0, + -0.61705308 + ], + "center_of_charge": [ + 0.0, + 0.0, + -0.51906287 + ], + "molecule": { + "@module": "pymatgen.core.structure", + "@class": "Molecule", + "charge": 0.0, + "spin_multiplicity": 1, + "sites": [ + { + "name": "O", + "species": [ + { + "element": "O", + "occu": 1 + } + ], + "xyz": [ + 0.0, + 0.0, + -0.39239463345348297 + ], + "properties": {} + }, + { + "name": "H", + "species": [ + { + "element": "H", + "occu": 1 + } + ], + "xyz": [ + 0.7705143200517215, + 0.0, + 0.19619731937262755 + ], + "properties": {} + }, + { + "name": "H", + "species": [ + { + "element": "H", + "occu": 1 + } + ], + "xyz": [ + -0.7705143200517215, + 0.0, + 0.19619731937262755 + ], + "properties": {} + } + ] + } + }, + "basis": { + "@module": "turbomoleio.output.data", + "@class": "BasisData", + "@version": "1.3.0", + "basis_per_specie": { + "o": "def-SV(P)", + "h": "def-SV(P)" + }, + "aux_basis_per_specie": {}, + "number_scf_basis_func": 18, + "number_scf_aux_basis_func": null + }, + "symmetry": { + "@module": "turbomoleio.output.data", + "@class": "SymmetryData", + "@version": "1.3.0", + "symbol": "c2v", + "n_reps": 4, + "reps": [ + "a1", + "a2", + "b1", + "b2" + ] + }, + "cosmo": null, + "run": { + "@module": "turbomoleio.output.data", + "@class": "RunData", + "@version": "1.3.0", + "host": "frontal3", + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:21:07.457000" + }, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:21:08.390000" + }, + "cpu_time": 0.13, + "wall_time": 0.98 + }, + "tm": { + "@module": "turbomoleio.output.data", + "@class": "TurbomoleData", + "@version": "1.3.0", + "version": "7.6", + "build": null, + "executable": "mpgrad" + } + }, + "relax": { + "@module": "turbomoleio.output.files", + "@class": "StatptOutput", + "@version": "1.3.0", + "info": { + "@module": "turbomoleio.output.data", + "@class": "StatptData", + "@version": "1.3.0", + "max_trust_radius": 0.3, + "min_trust_radius": 0.001, + "init_trust_radius": 0.15, + "min_grad_norm_for_gdiis": 0.01, + "prev_steps_for_gdiis": 5, + "hessian_update_method": "BFGS", + "thr_energy_change": 1e-06, + "thr_max_displ": 0.001, + "thr_max_grad": 0.001, + "thr_rms_displ": 0.0005, + "thr_rms_grad": 0.0005, + "use_defaults": true, + "final_step_radius": null + }, + "gradients": { + "@module": "turbomoleio.output.data", + "@class": "RelaxGradientsData", + "@version": "1.3.0", + "norm_cartesian": 0.000101974, + "norm_internal": 0.000106026, + "max_internal": null + }, + "convergence": { + "@module": "turbomoleio.output.data", + "@class": "RelaxConvergenceData", + "@version": "1.3.0", + "energy_change": { + "value": 2e-07, + "thr": 1e-06, + "conv": true + }, + "rms_displ": { + "value": 0.0002085, + "thr": 0.0005, + "conv": true + }, + "max_displ": { + "value": 0.0002933, + "thr": 0.001, + "conv": true + }, + "rms_grad": { + "value": 7.5e-05, + "thr": 0.0005, + "conv": true + }, + "max_grad": { + "value": 8.79e-05, + "thr": 0.001, + "conv": true + } + }, + "run": { + "@module": "turbomoleio.output.data", + "@class": "RunData", + "@version": "1.3.0", + "host": "frontal3", + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:21:06.518000" + }, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:21:06.748000" + }, + "cpu_time": 0.04, + "wall_time": 0.26 + }, + "tm": { + "@module": "turbomoleio.output.data", + "@class": "TurbomoleData", + "@version": "1.3.0", + "version": "7.6", + "build": null, + "executable": "statpt" + } + } +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/jobex/h2o_mp2_dscf_mpgrad/ref_parser.json b/turbomoleio/testfiles/outputs/TM_v7.6/jobex/h2o_mp2_dscf_mpgrad/ref_parser.json new file mode 100644 index 0000000..dfb2d7d --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/jobex/h2o_mp2_dscf_mpgrad/ref_parser.json @@ -0,0 +1,264 @@ +{ + "all_done": true, + "header": { + "executable": "statpt", + "host": "frontal3", + "tm_version": "7.6", + "tm_build": null, + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:21:06.518000" + } + }, + "centers": { + "center_of_mass": [ + 0.0, + 0.0, + -0.616942 + ], + "center_of_charge": [ + 0.0, + 0.0, + -0.51896943 + ] + }, + "coordinates": { + "coords": [ + [ + 0.0, + 0.0, + -0.7413849 + ], + [ + 1.45624155, + 0.0, + 0.37069245 + ], + [ + -1.45624155, + 0.0, + 0.37069245 + ] + ], + "species": [ + "o", + "h", + "h" + ], + "charges": [ + 8.0, + 1.0, + 1.0 + ], + "isotopes": [ + 0, + 0, + 0 + ] + }, + "basis": { + "basis_per_specie": { + "o": "def-SV(P)", + "h": "def-SV(P)" + }, + "aux_basis_per_specie": {}, + "number_scf_basis_func": 18, + "number_scf_aux_basis_func": null + }, + "symmetry": { + "symbol": "c2v", + "n_reps": 4, + "reps": [ + "a1", + "a2", + "b1", + "b2" + ] + }, + "cosmo_header": null, + "density_functional_data": null, + "rij_info": null, + "dftd": null, + "pre_scf_run": { + "diis": true, + "diis_error_vect": "FDS-SDF", + "conv_tot_en": 1e-07, + "conv_one_e_en": 0.0001, + "virtual_orbital_shift_on": true, + "virtual_orbital_shift_limit": 0.1, + "orbital_characterization": "scfconv=7", + "restart_file": "mos", + "n_occupied_orbitals": 5 + }, + "scf_iterations": { + "energies": [ + -75.937701281859, + -75.937701285158, + -75.937701285808 + ], + "first_index": 1, + "n_steps": 3, + "dampings": [ + 0.3, + 0.3, + 0.35 + ], + "converged": true + }, + "scf_energies": { + "total_energy": -75.93770128581, + "kinetic_energy": 75.83505268131, + "potential_energy": -151.77275396712, + "virial_theorem": 1.99864825241, + "wavefunction_norm": 1.0 + }, + "cosmo_results": null, + "electrostatic_moments": { + "unrestricted_electrons": null, + "charge": 0.0, + "dipole": { + "norm": 0.8949, + "moment": [ + 0.0, + 0.0, + 0.894905 + ] + }, + "quadrupole": { + "trace": -13.847229, + "anisotropy": 2.279668, + "moment": [ + [ + -3.096838, + 0.0, + -0.0 + ], + [ + 0.0, + -5.330547, + 0.0 + ], + [ + -0.0, + 0.0, + -5.419843 + ] + ] + } + }, + "timings": { + "cpu_time": 0.04, + "wall_time": 0.26, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:21:06.748000" + } + }, + "s2": null, + "is_uhf": false, + "fermi": null, + "integral": { + "integral_neglect_threshold": 1.8e-10, + "thize": 1e-05, + "thime": 5 + }, + "pre_escf_run": null, + "escf_iterations": null, + "escf_gs_total_en": null, + "escf_excitations": null, + "rdgrad_memory": null, + "gradient": { + "gradients": [ + [ + 0.0, + 0.0, + -4.518115e-05 + ], + [ + 3.603375e-05, + 0.0, + 2.259054e-05 + ], + [ + -3.603375e-05, + 0.0, + 2.259054e-05 + ] + ], + "dielectric": [ + [ + 0.000105, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 5e-05 + ] + ] + }, + "egrad_excited_state": null, + "statpt_info": { + "max_trust_radius": 0.3, + "min_trust_radius": 0.001, + "init_trust_radius": 0.15, + "min_grad_norm_for_gdiis": 0.01, + "prev_steps_for_gdiis": 5, + "hessian_update_method": "BFGS", + "thr_energy_change": 1e-06, + "thr_max_displ": 0.001, + "thr_max_grad": 0.001, + "thr_rms_displ": 0.0005, + "thr_rms_grad": 0.0005, + "use_defaults": true, + "final_step_radius": null + }, + "relax_info": null, + "relax_gradient_values": { + "norm_cartesian": 0.000101974, + "norm_internal": 0.000106026, + "max_internal": null + }, + "relax_conv_info": { + "energy_change": { + "value": 2e-07, + "thr": 1e-06, + "conv": true + }, + "rms_displ": { + "value": 0.0002085, + "thr": 0.0005, + "conv": true + }, + "rms_grad": { + "value": 7.5e-05, + "thr": 0.0005, + "conv": true + }, + "max_displ": { + "value": 0.0002933, + "thr": 0.001, + "conv": true + }, + "max_grad": { + "value": 8.79e-05, + "thr": 0.001, + "conv": true + } + }, + "aoforce_numerical_integration": null, + "aoforce_analysis": null, + "mp2_results": { + "energy": -76.12864838749817 + }, + "riper_scf_energies": null, + "periodicity_data": null +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/jobex/h2o_mp2_dscf_mpgrad_cosmo_nosym/job.last b/turbomoleio/testfiles/outputs/TM_v7.6/jobex/h2o_mp2_dscf_mpgrad_cosmo_nosym/job.last new file mode 100644 index 0000000..c43cb05 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/jobex/h2o_mp2_dscf_mpgrad_cosmo_nosym/job.last @@ -0,0 +1,861 @@ + +OPTIMIZATION CYCLE 5 +mer 25 gen 2023, 00.21.30, CET + + statpt (frontal3) : TURBOMOLE rev. V7-6 19 Oct 2021 at 10:10:11 compiled Oct 19th 2021 + Copyright (C) 2021 TURBOMOLE GmbH, Karlsruhe + + + 2023-01-25 00:21:30.760 + + + + this is S T A T P T + + + hessian and coordinate update for + stationary point search + + by barbara unterreiner, marek sierka, + and reinhart ahlrichs + + quantum chemistry group + universitaet karlsruhe + germany + + + + + +--------------------------------------------------+ + | Atomic coordinate, charge and isotop information | + +--------------------------------------------------+ + + atomic coordinates atom charge isotop + -0.00000193 0.00000000 -0.75291781 o 8.000 0 + 1.44903023 0.00000000 0.37645966 h 1.000 0 + -1.44902831 0.00000000 0.37645815 h 1.000 0 + + center of nuclear mass : -0.00000160 0.00000000 -0.62653908 + center of nuclear charge: -0.00000135 0.00000000 -0.52704247 + Keyword $statpt not found - using default options + + *************** Stationary point options ****************** + ************************************************************ + Maximum allowed trust radius: 3.000000E-01 + Minimum allowed trust radius: 1.000000E-03 + Initial trust radius: 1.500000E-01 + GDIIS used if gradient norm < 1.000000E-02 + Number of previous steps for GDIIS: 5 + Hessian update method: BFGS + *** Convergence criteria *** + Threshold for energy change: 1.000000E-06 + Threshold for max displacement element: 1.000000E-03 + Threshold for max gradient element : 1.000000E-03 + Threshold for RMS of displacement: 5.000000E-04 + Threshold for RMS of gradient: 5.000000E-04 + ************************************************************ + + + Keyword $statp missing in file + + Keyword $statpt not found - using default options + Number of symmetry restricted degrees of freedom: 9 + Constituted by: 3 translational degrees of freedom + 3 rotational degrees of freedom + 3 internal degrees of freedom + + ************************************************************************* + ATOM CARTESIAN COORDINATES + 1 o -0.00000192643026 0.00000000000000 -0.75291780778856 + 2 h 1.44903023492330 0.00000000000000 0.37645966075832 + 3 h -1.44902830849306 0.00000000000000 0.37645814703025 + ************************************************************************* + ATOM CARTESIAN GRADIENTS + 1 o -0.00000069066065 0.00000051602113 -0.00000769072395 + 2 h 0.00000670022795 -0.00000582766389 0.00000253320228 + 3 h -0.00000600956730 0.00000531164276 0.00000515746534 + ************************************************************************* + + norm of actual CARTESIAN gradient: 1.53652E-05 + norm of actual INTERNAL gradient: 1.05543E-05 + + ENERGY = -76.1422441352 a.u.; # of cycle = 5 + + Approximate Hessian read from $hessapprox data section + + Hessian updated according to BFGS formula + Number of zero Hessian eigenvalues: 0 + FIRST criterion done: 81844614.4916394 2 + Number of structures for GDIIS interpolation: 2 + GDIIS step: 0.000021 + + Transforming internal coordinate displacements to Cartesian space + Iteration 1 residual norm 2.096560E-05 + Iteration 2 residual norm 3.552800E-11 + Transformation converged + Residual norm: 3.552800E-11 after 2 iterations + + ****************************************************************** + CONVERGENCE INFORMATION + + Converged? Value Criterion + Energy change yes 0.0000000 0.0000010 + RMS of displacement yes 0.0000121 0.0005000 + RMS of gradient yes 0.0000061 0.0005000 + MAX displacement yes 0.0000145 0.0010000 + MAX gradient yes 0.0000074 0.0010000 + ****************************************************************** + + + ------------------------------------------------------------------------ + total cpu-time : 0.04 seconds + total wall-time : 0.44 seconds + ------------------------------------------------------------------------ + + **** statpt : all done **** + + + 2023-01-25 00:21:31.133 + +fine, there is no data group "$actual step" +next step = dscf + + WARNING : length of argument string +/projects/matgenix/COMMON/software/TURBOMOLE/evaluation_license/TURBOMOLE_76/bin/em64t-unknown-linux-gnu + exceeds 80 characters + argument will be ignored! + + + dscf (frontal3) : TURBOMOLE rev. V7-6 19 Oct 2021 at 10:10:11 compiled Oct 19th 2021 + Copyright (C) 2021 TURBOMOLE GmbH, Karlsruhe + + + 2023-01-25 00:21:31.360 + + + + d s c f - program + + idea & directorship : reinhart ahlrichs + program development : marco haeser + michael baer + dft version : oliver treutler + + + quantum chemistry group + universitaet karlsruhe + germany + + + + *-----------------------------------------------------------------------* + | program will use 1 thread(s) | + *-----------------------------------------------------------------------* + + + +--------------------------------------------------+ + | Atomic coordinate, charge and isotop information | + +--------------------------------------------------+ + + atomic coordinates atom charge isotop + -0.00000192 0.00000000 -0.75291401 o 8.000 0 + 1.44901630 0.00000000 0.37645776 h 1.000 0 + -1.44901438 0.00000000 0.37645625 h 1.000 0 + + center of nuclear mass : -0.00000160 0.00000000 -0.62653592 + center of nuclear charge: -0.00000134 0.00000000 -0.52703981 + + ************************************************************************* + jobex_mp2_dscf_mpgrad_cosmo_nosym + ************************************************************************* + + + + +--------------------------------------------------+ + | basis set information | + +--------------------------------------------------+ + + we will work with the 1s 3p 5d 7f 9g ... basis set + ...i.e. with spherical basis functions... + + type atoms prim cont basis + --------------------------------------------------------------------------- + o 1 24 14 def-SV(P) [3s2p1d|7s4p1d] + h 2 4 2 def-SV(P) [2s|4s] + --------------------------------------------------------------------------- + total: 3 32 18 + --------------------------------------------------------------------------- + + total number of primitive shells : 16 + total number of contracted shells : 10 + total number of cartesian basis functions : 19 + total number of SCF-basis functions : 18 + + + integral neglect threshold : 0.18E-09 + integral storage threshold THIZE : 0.10E-04 + integral storage threshold THIME : 5 + + + DENSITY CONVERGENCE CHECK SWITCHED ON ! + SCF CONVERGENCE IF RMS(delta[D]) < 0.1000000000E-06 + + + symmetry group of the molecule : c1 + + the group has the following generators : + c1(z) + + 1 symmetry operations found + + there are 1 real representations : a + + maximum number of shells which are related by symmetry : 1 + + ============================================================================== + COSMO switched on + ============================================================================== + COSMO stati: segments per atom: H 32 other atoms 92 + COSMO statistics: nps 136 npspher: 92 + COSMO surface: + number of segments: 136 + area (bohr**2): 153.922210 + volume (bohr**3): 172.807865 + COSMO: check number of disjunct cavities: + + ... OK contiguous cavity found + + ------------------------ + nuclear repulsion energy : 9.05419833698 + ------------------------ + + + ----------------- + -S,T+V- integrals + ----------------- + + 1e-integrals will be neglected if expon. factor < 0.175893E-10 + + Difference densities algorithm switched on. + The maximal number of linear combinations of + difference densities is 20 . + + DIIS switched on: error vector is FDS-SDF + Max. Iterations for DIIS is : 5 + DIIS matrix (see manual) + Scaling factor of diagonals : 1.200 + threshold for scaling factor : 0.000 + + scf convergence criterion : increment of total energy < .1000000D-06 + and increment of one-electron energy < .1000000D-03 + + MOs are in ASCII format ! + + + mo occupation : + irrep mo's occupied + a 18 5 + + number of basis functions : 18 + number of occupied orbitals : 5 + + + reading orbital data $scfmo from file mos + orbital characterization : scfconv=7 + mo-orthogonalization by Cholesky decomposition + + automatic virtual orbital shift switched on + shift if e(lumo)-e(homo) < 0.10000000 + + + DSCF restart information will be dumped onto file mos + + + current damping : 0.300 + ITERATION ENERGY 1e-ENERGY 2e-ENERGY RMS[dD(SAO)] TOL + 1 -75.951261327168 -122.80249120 37.797031537 0.000D+00 0.175D-09 + Ediel = -0.015374525834 + max. resid. norm for Fia-block= 4.294D-06 for orbital 4a + max. resid. fock norm = 5.751D-06 for orbital 12a + Delta Eig. = 0.0002192333 eV + + current damping : 0.300 + ITERATION ENERGY 1e-ENERGY 2e-ENERGY RMS[dD(SAO)] TOL + 2 -75.951261327223 -122.80252313 37.797063465 0.659D-06 0.111D-09 + Ediel = -0.015374636205 + Norm of current diis error: 0.54456E-05 + max. resid. norm for Fia-block= 1.715D-06 for orbital 4a + max. resid. fock norm = 2.182D-06 for orbital 8a + Delta Eig. = 0.0001382096 eV + + ENERGY & DENSITY CONVERGED ! + + + current damping : 0.350 + ITERATION ENERGY 1e-ENERGY 2e-ENERGY RMS[dD(SAO)] TOL + 3 -75.951261327248 -122.80251644 37.797056777 0.294D-06 0.900D-10 + Ediel = -0.015374675936 + max. resid. norm for Fia-block= 9.218D-07 for orbital 4a + max. resid. fock norm = 9.354D-07 for orbital 4a + + convergence criteria satisfied after 3 iterations + + + ************************************************************************* + jobex_mp2_dscf_mpgrad_cosmo_nosym + ************************************************************************* + + + ------------------------------------------ + | total energy = -75.95126132725 | + ------------------------------------------ + : kinetic energy = 75.80147124894 : + : potential energy = -151.75273257619 : + : virial theorem = 1.99802781316 : + : wavefunction norm = 1.00000000000 : + .......................................... + + + orbitals $scfmo will be written to file mos + + irrep 1a 2a 3a 4a 5a + eigenvalues H -20.54330 -1.31452 -0.69675 -0.57504 -0.50427 + eV -559.0159 -35.7702 -18.9598 -15.6478 -13.7220 + occupation 2.0000 2.0000 2.0000 2.0000 2.0000 + + irrep 6a 7a 8a 9a 10a + eigenvalues H 0.19299 0.27564 0.79939 0.92870 1.18855 + eV 5.2515 7.5005 21.7527 25.2715 32.3424 + + ============================================================================== + COSMO RESULTS + ============================================================================== + PARAMETER: + nppa: 1082 + nspa: 92 + nsph: 32 + nps: 136 + npspher: 92 + disex: 10.0000 + disex2: 3538.50 + rsolv [A]: 1.3000 + routf: 0.8500 + phsran: 0.0 + ampran: 0.10E-04 + cavity: closed + epsilon: infinity + refind: 1.300 + fepsi: 1.0000000 + CAVITY VOLUME/AREA [a.u.]: + surface: V1.0, A matrix: V1.0 + area: 153.92 + volume: 172.81 + SCREENING CHARGE: + cosmo : -0.003995 + correction : 0.003570 + total : -0.000425 + ENERGIES [a.u.]: + Total energy = -75.9512613272484 + Total energy + OC corr. = -75.9514205739 + Dielectric energy = -0.0153746759 + Diel. energy + OC corr. = -0.0155339226 + ELEMENT RADIUS [A]: ATOM LIST + o 1.72: 1 + h 1.30: 2,3 + ============================================================================== + + + + ============================================================================== + electrostatic moments + ============================================================================== + + reference point for electrostatic moments: 0.00000 0.00000 0.00000 + + + nuc elec -> total + ------------------------------------------------------------------------------ + charge + ------------------------------------------------------------------------------ + 10.000000 -10.000000 -0.000000 + + ------------------------------------------------------------------------------ + dipole moment + ------------------------------------------------------------------------------ + x -0.000013 0.000007 -0.000006 + y 0.000000 -0.000013 -0.000013 + z -5.270398 6.291059 1.020661 + + | dipole moment | = 1.0207 a.u. = 2.5943 debye + + ------------------------------------------------------------------------------ + quadrupole moment + ------------------------------------------------------------------------------ + xx 4.199291 -7.192007 -2.992716 + yy 0.000000 -5.354257 -5.354257 + zz 4.818476 -10.331401 -5.512925 + xy 0.000000 -0.000000 -0.000000 + xz 0.000014 0.000013 0.000027 + yz 0.000000 0.000011 0.000011 + + 1/3 trace= -4.619966 + anisotropy= 2.444740 + + ============================================================================== + +HOMO-LUMO Separation + HOMO : -0.50426929 H = -13.72187 eV + LUMO : 0.19298721 H = +5.25145 eV + HOMO-LUMO gap: 0.69725650 H = +18.97333 eV + + ============================================================================== + + + ------------------------------------------------------------------------ + total cpu-time : 0.14 seconds + total wall-time : 1.01 seconds + ------------------------------------------------------------------------ + + **** dscf : all done **** + + + 2023-01-25 00:21:32.291 + +fine, there is no data group "$actual step" +next step = mpgrad + + WARNING : length of argument string +/projects/matgenix/COMMON/software/TURBOMOLE/evaluation_license/TURBOMOLE_76/bin/em64t-unknown-linux-gnu + exceeds 80 characters + argument will be ignored! + + + mpgrad (frontal3) : TURBOMOLE rev. V7-6 19 Oct 2021 at 10:10:11 compiled Oct 19th 2021 + Copyright (C) 2021 TURBOMOLE GmbH, Karlsruhe + + + 2023-01-25 00:21:32.429 + + + + m p g r a d - program + + F.Haase & R.Ahlrichs (JCompChem 14(1993)907) + restructured and UMP2 added: M.Kollwitz (1995/6) + parallel version: G.Corongiu (1997) + symmetry: M.Haeser,J.Almloef,M.Feyereisen (TCA 79(1991)115) + energy: R.Ahlrichs,M.Baer,M.Haeser,H.Horn,C.Koelmel (CPL 162(1989)165) + + quantum chemistry group + university karlsruhe + germany + + + you specified 11 scratch files in the control file + + + +--------------------------------------------------+ + | Atomic coordinate, charge and isotop information | + +--------------------------------------------------+ + + atomic coordinates atom charge isotop + -0.00000192 0.00000000 -0.75291401 o 8.000 0 + 1.44901630 0.00000000 0.37645776 h 1.000 0 + -1.44901438 0.00000000 0.37645625 h 1.000 0 + + center of nuclear mass : -0.00000160 0.00000000 -0.62653592 + center of nuclear charge: -0.00000134 0.00000000 -0.52703981 + + +--------------------------------------------------+ + | basis set information | + +--------------------------------------------------+ + + we will work with the 1s 3p 5d 7f 9g ... basis set + ...i.e. with spherical basis functions... + + type atoms prim cont basis + --------------------------------------------------------------------------- + o 1 24 14 def-SV(P) [3s2p1d|7s4p1d] + h 2 4 2 def-SV(P) [2s|4s] + --------------------------------------------------------------------------- + total: 3 32 18 + --------------------------------------------------------------------------- + + total number of primitive shells : 16 + total number of contracted shells : 10 + total number of cartesian basis functions : 19 + total number of SCF-basis functions : 18 + + + MAXIMUM CORE MEMORY WHICH CAN BE ALLOCATED DYNAMICALLY = 500 Mbytes + ( or 65536000 double words ) + + + symmetry group of the molecule : c1 + + the group has the following generators : + c1(z) + + 1 symmetry operations found + + there are 1 real representations : a + + maximum number of shells which are related by symmetry : 1 + + + determining totally symmetric integral contributions + - equivalent to irreducible tensor elements - + which can be formed within each quadruple of representations : + + representation quadruple contributions + + 1 1 a a a a 1 + + + total number of totally symmetric contributions : 1 + total number of non-equal integral types : 1 + total number of non-zero integral types : 1 + t.number of mat.elements of symmetrizing projectors: 1 + total number of back-transformation matrix elements: 1 + + mo occupation : + irrep mo's occupied + a 18 5 + + number of basis functions : 18 + number of occupied orbitals : 5 + + MOs are in ASCII format ! + + + reading orbital data $scfmo from file mos + orbital characterization : scfconv=7 + time elapsed for calculating density matrices : 0.001 sec + + + number of non-frozen orbitals : 18 + number of non-frozen occupied orbitals : 5 + + setting up bound for integral derivative estimation + + increment for numerical differentiation : 0.00050000 + + biggest AO integral is expected to be 4.776656448 + biggest cartesian 1st derivative AO integral is expected to be 8.648821438 + sqrt of biggest ao-integral is expected to be 2.1855563 + + number of basis function pairs which contribute + to half-transformed integrals is expected to be : 190 + iloop= 1 + + MULTIPLE PASS Statistics + ---------------------------------------------------- + pass irrep lambda batch : MO to MO + ---------------------------------------------------- + 1 1 -> 1 1 -> 5 1 -> 5 + + + ************************************************************** + RESULTING NUMBER OF INTEGRAL AND DERIVATIVE EVALUATIONS 1 + ************************************************************** + + number of basis function pairs which contribute + to 1st half-transformation of T2 amplitudes : 211 + to 2nd half-transformation of T2 amplitudes : 139 + + + ----------------------------------------------- + PASS : 1 + ----------------------------------------------- + + record length scale factor = 8 + + + actual number of basis function pairs which contr. + to half-transformed integrals is : 190 + + cpu for first half-transformation 0.06 s + + cpu for second half-transformation 0.00 s + + cpu for calculation of T2-amplitudes 0.00 s + + cpu to increment the relaxed densities 0.00 s + + cpu to increment the L-Matrix (3-ext.) 0.00 s + + cpu to increment the L-Matrix (1-ext.) 0.00 s + + cpu for first T2 half transformation 0.00 s + + cpu to increment the 2e-gradient 0.02 s + + Largest euclidian normes of T2 (for fixed ij) + --------------------------------------------- + [ i j ] norm[ T2(ij) ] + --------------------------------------------- + 4 3 0.09141165573068 + 5 4 0.08855428119544 + 5 3 0.08816045103300 + 3 3 0.07250596998748 + 4 4 0.06569408965226 + + + Largest T2 amplitudes + --------------------------------------------- + [ i j a b ] T2(ij,ab) + --------------------------------------------- + 5 4 10 11 0.06088096850855 + 5 3 12 11 0.04965226181039 + 5 5 11 11 0.04743754662732 + 5 3 7 11 0.04405301580796 + 4 3 12 10 0.04301535467370 + + + ***************************************************** + * * + * SCF-energy : -75.95126132724999 * + * MP2-energy : -0.19098280263821 * + * total : -76.14224412988821 * + * * + * (MP2-energy evaluated from T2 amplitudes) * + * * + ***************************************************** + + +--------------------------------------------------------------------------- + trace of occupied-occupied block of relaxed density : -0.094941479001530 + trace of virtual-virtual block of relaxed density : 0.094941479001530 +--------------------------------------------------------------------------- + ============================================================================== + COSMO switched on + ============================================================================== + COSMO stati: segments per atom: H 32 other atoms 92 + COSMO statistics: nps 136 npspher: 92 + COSMO surface: + number of segments: 136 + area (bohr**2): 153.922210 + volume (bohr**3): 172.807865 + COSMO: check number of disjunct cavities: + + ... OK contiguous cavity found + ====================================================== + COSMO settings in RICC2 + -------------------------- + Solvent charges are equilibrated for ground state + COSMO linear response (LR) contribution included + Outlying Charge Correction (OCC) is performed + Using epsilon = -1.000 + Using refractive index = 1.300 + ====================================================== + IMPORTANT NOTICE: The calculation of the solvent contributions will + need the relaxed densities in general. Therefore the actual COSMO + energies will be output only at the end of the run. Any energies + or excitation energies quoted before that are only intermediate + quantities and should be ignored unless you know what you are doing! + + ============================================================================== + COSMO SETTINGS + ============================================================================== + PARAMETER: + nppa: 1082 + nspa: 92 + nsph: 32 + nps: 136 + npspher: 92 + disex: 10.0000 + disex2: 3538.50 + rsolv [A]: 1.3000 + routf: 0.8500 + phsran: 0.0 + ampran: 0.10E-04 + cavity: closed + epsilon: infinity + refind: 1.300 + fepsi: 1.0000000 + CAVITY VOLUME/AREA [a.u.]: + surface: V1.0, A matrix: V1.0 + area: 153.92 + volume: 172.81 + ELEMENT RADIUS [A]: ATOM LIST + o 1.72: 1 + h 1.30: 2,3 + ============================================================================== + COSMO: cphf update in wdens 0 + +------------------------------------------------------------ + cpu needed for calculation of 2e-fock term 0.07 sec. +------------------------------------------------------------ + + ------------------------------------------------- + -CPHF- contribution to MP2-Gradient via Z-vector + ------------------------------------------------- + + Requested convergence is 0.1000000000E-11 RMS + + iteration : 1 convergence : 0.4259684575E-03 + iteration : 2 convergence : 0.4336001617E-04 + iteration : 3 convergence : 0.3653965940E-06 + iteration : 4 convergence : 0.5770990905E-08 + iteration : 5 convergence : 0.1996218146E-09 + iteration : 6 convergence : 0.2018914506E-11 + iteration : 7 convergence : 0.3131525872E-13 + + *** the iterative expansion of z(ai) converged after 7 iterations *** +---------------------------------------------------------------------- + cpu needed for solving the linear equation for z-vector 0.02 sec. +---------------------------------------------------------------------- + COSMO: cphf update in wdens 1 + +------------------------------------------------------------ + cpu needed for calculation of 2e-fock term 0.00 sec. +------------------------------------------------------------ + COSMO: write data to file cosmo_transfer.tmp + ============================================================================== + MP2 COSMO RESULTS + ============================================================================== + PARAMETER: + nppa: 1082 + nspa: 92 + nsph: 32 + nps: 136 + npspher: 92 + disex: 10.0000 + disex2: 3538.50 + rsolv [A]: 1.3000 + routf: 0.8500 + phsran: 0.0 + ampran: 0.10E-04 + cavity: closed + epsilon: infinity + refind: 1.300 + fepsi: 1.0000000 + CAVITY VOLUME/AREA [a.u.]: + surface: V1.0, A matrix: V1.0 + area: 153.92 + volume: 172.81 + MP2 SCREENING CHARGE: + cosmo : -0.004455 + correction : 0.004028 + total : -0.000426 + ELEMENT RADIUS [A]: ATOM LIST + o 1.72: 1 + h 1.30: 2,3 + ============================================================================== + Energy contributions: + SCF energy (incl. COSMO) -75.9512613272 + dielectric energy(charges from SCF step): -0.0153746759 + outlying charge correction (OCC): -0.0001592467 + correlation energy: -0.1909828026 + direct COSMO contribution (through F): 0.0002236456 + + Total energies: + MP2-PTE energy (w/o OCC) : -76.1422441299 + MP2-PTE energy (with OCC): -76.1424033766 + MP2-PTED0 energy (w/o OCC): -76.1422473254 + MP2-PTED0 energy (with OCC): -76.1423733779 + ============================================================================== + + 2e-integral 1st. derivatives will be neglected if expon. factor < 0.100000E-06 + outer boundary for 2e-integral derivative neglection is 0.100000E-06 + + + cpu to increment the 2e-gradient 0.03 s + ============================================================================== + COSMO switched on + ============================================================================== + + ... calculate PTE-COSMO contributions to 1e grad. + + 1e-integral 1st. derivatives will be neglected if expon. factor < 0.100000E-10 + +COSMO: already initialized +--------------------------------------------------------------------------- + cpu needed for calculation of the 1-electron contributions 0.01 sec. +--------------------------------------------------------------------------- + + ------------------------------ + total gradient of MP2-energy + ------------------------------ + + ------------------------------------------------ + cartesian gradient of the energy (hartree/bohr) + ------------------------------------------------ + + ATOM 1 o 2 h 3 h +dE/dx -0.6801835D-06 0.3653282D-06 0.3148553D-06 +dE/dy 0.5158911D-06 -0.5827618D-05 0.5311727D-05 +dE/dz -0.2332745D-06 -0.1199601D-05 0.1432819D-05 + + resulting FORCE (fx,fy,fz) = (0.488D-14,0.674D-15,-.563D-10) + resulting MOMENT (mx,my,mz) = (0.583D-06,0.458D-05,-.161D-04) + + + exx = 0.000000 eyy = 0.000000 ezz = 0.000000 + eyz = -0.000000 exz = -0.000002 exy = -0.000008 + + + ********************************************************************** + |maximum component of gradient| : 0.58276184E-05 (atom 2 h ) + gradient norm : 0.81659909E-05 + ********************************************************************** + *** cartesian gradients written onto *** + + + + ============================================================================== + electrostatic moments + ============================================================================== + + reference point for electrostatic moments: 0.00000 0.00000 0.00000 + + + nuc SCF,e -> SCF,tot MP2 -> total + ------------------------------------------------------------------------------ + charge + ------------------------------------------------------------------------------ + 10.000000 -10.000000 -0.000000 0.000000 -0.000000 + + ------------------------------------------------------------------------------ + dipole moment + ------------------------------------------------------------------------------ + x -0.000013 0.000007 -0.000006 -0.000001 -0.000007 + y 0.000000 -0.000013 -0.000013 -0.000000 -0.000013 + z -5.270398 6.291059 1.020661 -0.010345 1.010315 + + | dipole moment | = 1.0103 a.u. = 2.5680 debye + + ------------------------------------------------------------------------------ + quadrupole moment + ------------------------------------------------------------------------------ + xx 4.199291 -7.192007 -2.992716 -0.066511 -3.059227 + yy 0.000000 -5.354257 -5.354257 -0.043301 -5.397558 + zz 4.818476 -10.331401 -5.512925 -0.036373 -5.549298 + xy 0.000000 -0.000000 -0.000000 0.000000 -0.000000 + xz 0.000014 0.000013 0.000027 -0.000000 0.000027 + yz 0.000000 0.000011 0.000011 -0.000000 0.000011 + + 1/3 trace= -4.668695 + anisotropy= 2.417775 + + ============================================================================== + + + + ------------------------------------------------------------------------ + total cpu-time : 0.24 seconds + total wall-time : 1.54 seconds + ------------------------------------------------------------------------ + + **** mpgrad : all done **** + + + 2023-01-25 00:21:33.903 + +fine, there is no data group "$actual step" +next step = relax + energy change : actual value = -0.2200E-08 threshold = 0.1000E-05 + geom. gradient : actual value = 0.7381E-05 threshold = 0.1000E-02 + +CONVERGENCY CRITERIA FULFILLED IN CYCLE 5 + diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/jobex/h2o_mp2_dscf_mpgrad_cosmo_nosym/ref_output.json b/turbomoleio/testfiles/outputs/TM_v7.6/jobex/h2o_mp2_dscf_mpgrad_cosmo_nosym/ref_output.json new file mode 100644 index 0000000..6767b07 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/jobex/h2o_mp2_dscf_mpgrad_cosmo_nosym/ref_output.json @@ -0,0 +1,503 @@ +{ + "@module": "turbomoleio.output.files", + "@class": "JobexOutput", + "@version": "1.3.0", + "energy": { + "@module": "turbomoleio.output.files", + "@class": "ScfOutput", + "@version": "1.3.0", + "dft": null, + "scf": { + "@module": "turbomoleio.output.data", + "@class": "ScfData", + "@version": "1.3.0", + "iterations": { + "@module": "turbomoleio.output.data", + "@class": "ScfIterationData", + "@version": "1.3.0", + "energies": [ + -75.951261327168, + -75.951261327223, + -75.951261327248 + ], + "first_index": 1, + "n_steps": 3, + "dampings": [ + 0.3, + 0.3, + 0.35 + ], + "converged": true + }, + "diis": true, + "diis_error_vect": "FDS-SDF", + "conv_tot_en": 1e-07, + "conv_one_e_en": 0.0001, + "virtual_orbital_shift_on": true, + "virtual_orbital_shift_limit": 0.1, + "orbital_characterization": "scfconv=7", + "restart_file": "mos", + "n_occupied_orbitals": 5 + }, + "energies": { + "@module": "turbomoleio.output.data", + "@class": "ScfEnergiesData", + "@version": "1.3.0", + "total_energy": -75.95126132725, + "kinetic_energy": 75.80147124894, + "potential_energy": -151.75273257619, + "virial_theorem": 1.99802781316, + "wavefunction_norm": 1.0, + "coulomb_energy": null, + "xc_energy": null, + "ts_energy": null, + "free_energy": null, + "sigma0_energy": null + }, + "electrostatic": { + "@module": "turbomoleio.output.data", + "@class": "ElectrostaticMomentsData", + "@version": "1.3.0", + "charge": -0.0, + "unrestricted_electrons": null, + "dipole_vector": [ + -6e-06, + -1.3e-05, + 1.020661 + ], + "dipole_norm": 1.0207, + "quadrupole_tensor": [ + [ + -2.992716, + -0.0, + 2.7e-05 + ], + [ + -0.0, + -5.354257, + 1.1e-05 + ], + [ + 2.7e-05, + 1.1e-05, + -5.512925 + ] + ], + "quadrupole_trace": -13.859898, + "quadrupole_anisotropy": 2.44474 + }, + "geometry": { + "@module": "turbomoleio.output.data", + "@class": "GeometryData", + "@version": "1.3.0", + "center_of_mass": [ + -1.6e-06, + 0.0, + -0.62653592 + ], + "center_of_charge": [ + -1.34e-06, + 0.0, + -0.52703981 + ], + "molecule": { + "@module": "pymatgen.core.structure", + "@class": "Molecule", + "charge": 0.0, + "spin_multiplicity": 1, + "sites": [ + { + "name": "O", + "species": [ + { + "element": "O", + "occu": 1 + } + ], + "xyz": [ + -1.0160202449337599e-06, + 0.0, + -0.39842493586159344 + ], + "properties": {} + }, + { + "name": "H", + "species": [ + { + "element": "H", + "occu": 1 + } + ], + "xyz": [ + 0.7667864041869846, + 0.0, + 0.19921286745959094 + ], + "properties": {} + }, + { + "name": "H", + "species": [ + { + "element": "H", + "occu": 1 + } + ], + "xyz": [ + -0.7667853881667397, + 0.0, + 0.19921206840200248 + ], + "properties": {} + } + ] + } + }, + "basis": { + "@module": "turbomoleio.output.data", + "@class": "BasisData", + "@version": "1.3.0", + "basis_per_specie": { + "o": "def-SV(P)", + "h": "def-SV(P)" + }, + "aux_basis_per_specie": {}, + "number_scf_basis_func": 18, + "number_scf_aux_basis_func": null + }, + "run": { + "@module": "turbomoleio.output.data", + "@class": "RunData", + "@version": "1.3.0", + "host": "frontal3", + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:21:31.360000" + }, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:21:32.291000" + }, + "cpu_time": 0.14, + "wall_time": 1.01 + }, + "tm": { + "@module": "turbomoleio.output.data", + "@class": "TurbomoleData", + "@version": "1.3.0", + "version": "7.6", + "build": null, + "executable": "dscf" + }, + "cosmo": { + "@module": "turbomoleio.output.data", + "@class": "CosmoData", + "@version": "1.3.0", + "info": { + "area": 153.92221, + "volume": 172.807865 + }, + "parameters": { + "nppa": 1082, + "nspa": 92, + "nsph": 32, + "nps": 136, + "npspher": 92, + "disex": 10.0, + "disex2": 3538.5, + "rsolv": 1.3, + "routf": 0.85, + "phsran": 0.0, + "ampran": 1e-05, + "cavity": "closed", + "epsilon": "infinity", + "refind": 1.3, + "fepsi": 1.0 + }, + "screening_charge": { + "cosmo": -0.003995, + "correction": 0.00357, + "total": -0.000425 + }, + "energies": { + "total_energy": -75.9512613272484, + "total_energy_oc_corr": -75.9514205739, + "dielectric_energy": -0.0153746759, + "dielectric_energy_oc_corr": -0.0155339226 + }, + "element_radius": { + "O": { + "radius": 1.72, + "sites": [ + 1 + ] + }, + "H": { + "radius": 1.3, + "sites": [ + 2, + 3 + ] + } + } + }, + "spin": { + "@module": "turbomoleio.output.data", + "@class": "SpinData", + "@version": "1.3.0", + "unrestricted": false, + "s2": null + }, + "integral": { + "@module": "turbomoleio.output.data", + "@class": "IntegralData", + "@version": "1.3.0", + "integral_neglect_threshold": 1.8e-10, + "thize": 1e-05, + "thime": 5 + }, + "smearing": null, + "symmetry": { + "@module": "turbomoleio.output.data", + "@class": "SymmetryData", + "@version": "1.3.0", + "symbol": "c1", + "n_reps": 1, + "reps": [ + "a" + ] + }, + "periodicity": null + }, + "gradient": { + "@module": "turbomoleio.output.files", + "@class": "MP2Output", + "@version": "1.3.0", + "info": null, + "results": { + "@module": "turbomoleio.output.data", + "@class": "MP2Results", + "@version": "1.3.0", + "energy": -76.14224412988821 + }, + "geometry": { + "@module": "turbomoleio.output.data", + "@class": "GeometryData", + "@version": "1.3.0", + "center_of_mass": [ + -1.6e-06, + 0.0, + -0.62653592 + ], + "center_of_charge": [ + -1.34e-06, + 0.0, + -0.52703981 + ], + "molecule": { + "@module": "pymatgen.core.structure", + "@class": "Molecule", + "charge": 0.0, + "spin_multiplicity": 1, + "sites": [ + { + "name": "O", + "species": [ + { + "element": "O", + "occu": 1 + } + ], + "xyz": [ + -1.0160202449337599e-06, + 0.0, + -0.39842493586159344 + ], + "properties": {} + }, + { + "name": "H", + "species": [ + { + "element": "H", + "occu": 1 + } + ], + "xyz": [ + 0.7667864041869846, + 0.0, + 0.19921286745959094 + ], + "properties": {} + }, + { + "name": "H", + "species": [ + { + "element": "H", + "occu": 1 + } + ], + "xyz": [ + -0.7667853881667397, + 0.0, + 0.19921206840200248 + ], + "properties": {} + } + ] + } + }, + "basis": { + "@module": "turbomoleio.output.data", + "@class": "BasisData", + "@version": "1.3.0", + "basis_per_specie": { + "o": "def-SV(P)", + "h": "def-SV(P)" + }, + "aux_basis_per_specie": {}, + "number_scf_basis_func": 18, + "number_scf_aux_basis_func": null + }, + "symmetry": { + "@module": "turbomoleio.output.data", + "@class": "SymmetryData", + "@version": "1.3.0", + "symbol": "c1", + "n_reps": 1, + "reps": [ + "a" + ] + }, + "cosmo": { + "@module": "turbomoleio.output.data", + "@class": "CosmoData", + "@version": "1.3.0", + "info": { + "area": 153.92221, + "volume": 172.807865 + }, + "parameters": null, + "screening_charge": null, + "energies": null, + "element_radius": null + }, + "run": { + "@module": "turbomoleio.output.data", + "@class": "RunData", + "@version": "1.3.0", + "host": "frontal3", + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:21:32.429000" + }, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:21:33.903000" + }, + "cpu_time": 0.24, + "wall_time": 1.54 + }, + "tm": { + "@module": "turbomoleio.output.data", + "@class": "TurbomoleData", + "@version": "1.3.0", + "version": "7.6", + "build": null, + "executable": "mpgrad" + } + }, + "relax": { + "@module": "turbomoleio.output.files", + "@class": "StatptOutput", + "@version": "1.3.0", + "info": { + "@module": "turbomoleio.output.data", + "@class": "StatptData", + "@version": "1.3.0", + "max_trust_radius": 0.3, + "min_trust_radius": 0.001, + "init_trust_radius": 0.15, + "min_grad_norm_for_gdiis": 0.01, + "prev_steps_for_gdiis": 5, + "hessian_update_method": "BFGS", + "thr_energy_change": 1e-06, + "thr_max_displ": 0.001, + "thr_max_grad": 0.001, + "thr_rms_displ": 0.0005, + "thr_rms_grad": 0.0005, + "use_defaults": true, + "final_step_radius": null + }, + "gradients": { + "@module": "turbomoleio.output.data", + "@class": "RelaxGradientsData", + "@version": "1.3.0", + "norm_cartesian": 1.53652e-05, + "norm_internal": 1.05543e-05, + "max_internal": null + }, + "convergence": { + "@module": "turbomoleio.output.data", + "@class": "RelaxConvergenceData", + "@version": "1.3.0", + "energy_change": { + "value": 0.0, + "thr": 1e-06, + "conv": true + }, + "rms_displ": { + "value": 1.21e-05, + "thr": 0.0005, + "conv": true + }, + "max_displ": { + "value": 1.45e-05, + "thr": 0.001, + "conv": true + }, + "rms_grad": { + "value": 6.1e-06, + "thr": 0.0005, + "conv": true + }, + "max_grad": { + "value": 7.4e-06, + "thr": 0.001, + "conv": true + } + }, + "run": { + "@module": "turbomoleio.output.data", + "@class": "RunData", + "@version": "1.3.0", + "host": "frontal3", + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:21:30.760000" + }, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:21:31.133000" + }, + "cpu_time": 0.04, + "wall_time": 0.44 + }, + "tm": { + "@module": "turbomoleio.output.data", + "@class": "TurbomoleData", + "@version": "1.3.0", + "version": "7.6", + "build": null, + "executable": "statpt" + } + } +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/jobex/h2o_mp2_dscf_mpgrad_cosmo_nosym/ref_parser.json b/turbomoleio/testfiles/outputs/TM_v7.6/jobex/h2o_mp2_dscf_mpgrad_cosmo_nosym/ref_parser.json new file mode 100644 index 0000000..4530c28 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/jobex/h2o_mp2_dscf_mpgrad_cosmo_nosym/ref_parser.json @@ -0,0 +1,308 @@ +{ + "all_done": true, + "header": { + "executable": "statpt", + "host": "frontal3", + "tm_version": "7.6", + "tm_build": null, + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:21:30.760000" + } + }, + "centers": { + "center_of_mass": [ + -1.6e-06, + 0.0, + -0.62653908 + ], + "center_of_charge": [ + -1.35e-06, + 0.0, + -0.52704247 + ] + }, + "coordinates": { + "coords": [ + [ + -1.93e-06, + 0.0, + -0.75291781 + ], + [ + 1.44903023, + 0.0, + 0.37645966 + ], + [ + -1.44902831, + 0.0, + 0.37645815 + ] + ], + "species": [ + "o", + "h", + "h" + ], + "charges": [ + 8.0, + 1.0, + 1.0 + ], + "isotopes": [ + 0, + 0, + 0 + ] + }, + "basis": { + "basis_per_specie": { + "o": "def-SV(P)", + "h": "def-SV(P)" + }, + "aux_basis_per_specie": {}, + "number_scf_basis_func": 18, + "number_scf_aux_basis_func": null + }, + "symmetry": { + "symbol": "c1", + "n_reps": 1, + "reps": [ + "a" + ] + }, + "cosmo_header": { + "area": 153.92221, + "volume": 172.807865 + }, + "density_functional_data": null, + "rij_info": null, + "dftd": null, + "pre_scf_run": { + "diis": true, + "diis_error_vect": "FDS-SDF", + "conv_tot_en": 1e-07, + "conv_one_e_en": 0.0001, + "virtual_orbital_shift_on": true, + "virtual_orbital_shift_limit": 0.1, + "orbital_characterization": "scfconv=7", + "restart_file": "mos", + "n_occupied_orbitals": 5 + }, + "scf_iterations": { + "energies": [ + -75.951261327168, + -75.951261327223, + -75.951261327248 + ], + "first_index": 1, + "n_steps": 3, + "dampings": [ + 0.3, + 0.3, + 0.35 + ], + "converged": true + }, + "scf_energies": { + "total_energy": -75.95126132725, + "kinetic_energy": 75.80147124894, + "potential_energy": -151.75273257619, + "virial_theorem": 1.99802781316, + "wavefunction_norm": 1.0 + }, + "cosmo_results": { + "parameters": { + "nppa": 1082, + "nspa": 92, + "nsph": 32, + "nps": 136, + "npspher": 92, + "disex": 10.0, + "disex2": 3538.5, + "rsolv": 1.3, + "routf": 0.85, + "phsran": 0.0, + "ampran": 1e-05, + "cavity": "closed", + "epsilon": "infinity", + "refind": 1.3, + "fepsi": 1.0 + }, + "screening_charge": { + "cosmo": -0.003995, + "correction": 0.00357, + "total": -0.000425 + }, + "energies": { + "total_energy": -75.9512613272484, + "total_energy_oc_corr": -75.9514205739, + "dielectric_energy": -0.0153746759, + "dielectric_energy_oc_corr": -0.0155339226 + }, + "element_radius": { + "o": { + "radius": 1.72, + "sites": [ + 1 + ] + }, + "h": { + "radius": 1.3, + "sites": [ + 2, + 3 + ] + } + } + }, + "electrostatic_moments": { + "unrestricted_electrons": null, + "charge": -0.0, + "dipole": { + "norm": 1.0207, + "moment": [ + -6e-06, + -1.3e-05, + 1.020661 + ] + }, + "quadrupole": { + "trace": -13.859898, + "anisotropy": 2.44474, + "moment": [ + [ + -2.992716, + -0.0, + 2.7e-05 + ], + [ + -0.0, + -5.354257, + 1.1e-05 + ], + [ + 2.7e-05, + 1.1e-05, + -5.512925 + ] + ] + } + }, + "timings": { + "cpu_time": 0.04, + "wall_time": 0.44, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:21:31.133000" + } + }, + "s2": null, + "is_uhf": false, + "fermi": null, + "integral": { + "integral_neglect_threshold": 1.8e-10, + "thize": 1e-05, + "thime": 5 + }, + "pre_escf_run": null, + "escf_iterations": null, + "escf_gs_total_en": null, + "escf_excitations": null, + "rdgrad_memory": null, + "gradient": { + "gradients": [ + [ + -6.801835e-07, + 5.158911e-07, + -2.332745e-07 + ], + [ + 3.653282e-07, + -5.827618e-06, + -1.199601e-06 + ], + [ + 3.148553e-07, + 5.311727e-06, + 1.432819e-06 + ] + ], + "dielectric": [ + [ + 0.0, + -8e-06, + -2e-06 + ], + [ + -8e-06, + 0.0, + -0.0 + ], + [ + -2e-06, + -0.0, + 0.0 + ] + ] + }, + "egrad_excited_state": null, + "statpt_info": { + "max_trust_radius": 0.3, + "min_trust_radius": 0.001, + "init_trust_radius": 0.15, + "min_grad_norm_for_gdiis": 0.01, + "prev_steps_for_gdiis": 5, + "hessian_update_method": "BFGS", + "thr_energy_change": 1e-06, + "thr_max_displ": 0.001, + "thr_max_grad": 0.001, + "thr_rms_displ": 0.0005, + "thr_rms_grad": 0.0005, + "use_defaults": true, + "final_step_radius": null + }, + "relax_info": null, + "relax_gradient_values": { + "norm_cartesian": 1.53652e-05, + "norm_internal": 1.05543e-05, + "max_internal": null + }, + "relax_conv_info": { + "energy_change": { + "value": 0.0, + "thr": 1e-06, + "conv": true + }, + "rms_displ": { + "value": 1.21e-05, + "thr": 0.0005, + "conv": true + }, + "rms_grad": { + "value": 6.1e-06, + "thr": 0.0005, + "conv": true + }, + "max_displ": { + "value": 1.45e-05, + "thr": 0.001, + "conv": true + }, + "max_grad": { + "value": 7.4e-06, + "thr": 0.001, + "conv": true + } + }, + "aoforce_numerical_integration": null, + "aoforce_analysis": null, + "mp2_results": { + "energy": -76.14224412988821 + }, + "riper_scf_energies": null, + "periodicity_data": null +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/jobex/h2o_mp2_ridft_rimp2/job.last b/turbomoleio/testfiles/outputs/TM_v7.6/jobex/h2o_mp2_ridft_rimp2/job.last new file mode 100644 index 0000000..14d328c --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/jobex/h2o_mp2_ridft_rimp2/job.last @@ -0,0 +1,1095 @@ + +OPTIMIZATION CYCLE 7 +mer 25 gen 2023, 00.20.26, CET + + statpt (frontal3) : TURBOMOLE rev. V7-6 19 Oct 2021 at 10:10:11 compiled Oct 19th 2021 + Copyright (C) 2021 TURBOMOLE GmbH, Karlsruhe + + + 2023-01-25 00:20:26.906 + + + + this is S T A T P T + + + hessian and coordinate update for + stationary point search + + by barbara unterreiner, marek sierka, + and reinhart ahlrichs + + quantum chemistry group + universitaet karlsruhe + germany + + + + + +--------------------------------------------------+ + | Atomic coordinate, charge and isotop information | + +--------------------------------------------------+ + + atomic coordinates atom charge isotop + 0.00000000 0.00000000 -0.74170266 o 8.000 0 + 1.45584603 0.00000000 0.37085133 h 1.000 0 + -1.45584603 0.00000000 0.37085133 h 1.000 0 + + center of nuclear mass : 0.00000000 0.00000000 -0.61720642 + center of nuclear charge: 0.00000000 0.00000000 -0.51919187 + Keyword $statpt not found - using default options + + *************** Stationary point options ****************** + ************************************************************ + Maximum allowed trust radius: 3.000000E-01 + Minimum allowed trust radius: 1.000000E-03 + Initial trust radius: 1.500000E-01 + GDIIS used if gradient norm < 1.000000E-02 + Number of previous steps for GDIIS: 5 + Hessian update method: BFGS + *** Convergence criteria *** + Threshold for energy change: 1.000000E-06 + Threshold for max displacement element: 1.000000E-03 + Threshold for max gradient element : 1.000000E-03 + Threshold for RMS of displacement: 5.000000E-04 + Threshold for RMS of gradient: 5.000000E-04 + ************************************************************ + + + Keyword $statp missing in file + + Keyword $statpt not found - using default options + ************************************************************************* + ATOM CARTESIAN COORDINATES + 1 o 0.00000000000001 0.00000000000000 -0.74170266459489 + 2 h 1.45584602591597 0.00000000000000 0.37085133229744 + 3 h -1.45584602591597 0.00000000000000 0.37085133229743 + ************************************************************************* + ATOM CARTESIAN GRADIENTS + 1 o 0.00000000000002 -0.00000000000010 0.00001671473433 + 2 h -0.00000745462602 0.00000000000005 -0.00000835736722 + 3 h 0.00000745462600 0.00000000000005 -0.00000835736723 + ************************************************************************* + + norm of actual CARTESIAN gradient: 2.30264E-05 + + ENERGY = -76.1263574747 a.u.; # of cycle = 7 + + Approximate Hessian read from $hessapprox data section + + Hessian updated according to BFGS formula + Number of zero Hessian eigenvalues: 6 + FIRST criterion done: 507322523056150. 2 + Number of structures for GDIIS interpolation: 2 + GDIIS step: 0.000028 + + ****************************************************************** + CONVERGENCE INFORMATION + + Converged? Value Criterion + Energy change yes 0.0000000 0.0000010 + RMS of displacement yes 0.0000094 0.0005000 + RMS of gradient yes 0.0000077 0.0005000 + MAX displacement yes 0.0000229 0.0010000 + MAX gradient yes 0.0000167 0.0010000 + ****************************************************************** + + + ------------------------------------------------------------------------ + total cpu-time : 0.03 seconds + total wall-time : 0.31 seconds + ------------------------------------------------------------------------ + + **** statpt : all done **** + + + 2023-01-25 00:20:27.178 + +fine, there is no data group "$actual step" +next step = ridft + + WARNING : length of argument string +/projects/matgenix/COMMON/software/TURBOMOLE/evaluation_license/TURBOMOLE_76/bin/em64t-unknown-linux-gnu + exceeds 80 characters + argument will be ignored! + + + ridft (frontal3) : TURBOMOLE rev. V7-6 19 Oct 2021 at 10:10:11 compiled Oct 19th 2021 + Copyright (C) 2021 TURBOMOLE GmbH, Karlsruhe + + + 2023-01-25 00:20:27.345 + + + + r i d f t + + DFT program with RI approximation + for coulomb part + + + + + + References: + + TURBOMOLE: + R. Ahlrichs, M. Baer, M. Haeser, H. Horn, and + C. Koelmel + Electronic structure calculations on workstation + computers: the program system TURBOMOLE + Chem. Phys. Lett. 162: 165 (1989) + Density Functional: + O. Treutler and R. Ahlrichs + Efficient Molecular Numerical Integration Schemes + J. Chem. Phys. 102: 346 (1995) + Parallel Version: + Performance of parallel TURBOMOLE for Density + Functional Calculations + M. v. Arnim and R. Ahlrichs + J. Comp. Chem. 19: 1746 (1998) + RI-J Method: + Auxiliary Basis Sets to approximate Coulomb + Potentials + Chem. Phys. Lett. 240: 283 (1995) + K. Eichkorn, O. Treutler, H. Oehm, M. Haeser + and R. Ahlrichs + Chem. Phys. Lett. 242: 652 (1995) + + Auxiliary Basis Sets for Main Row Atoms and their + Use to approximate Coulomb Potentials + K. Eichkorn, F. Weigend, O. Treutler and + R. Ahlrichs + Theo. Chem. Acc. 97: 119 (1997) + + Accurate Coulomb-fitting basis sets for H to Rn + F. Weigend + Phys. Chem. Chem. Phys. 8: 1057 (2006) + + Multipole accelerated RI-J (MARI-J): + Fast evaluation of the Coulomb potential for + electron densities using multipole accelerated + resolution of identity approximation + M. Sierka, A. Hogekamp and R. Ahlrichs + J. Chem. Phys. 118: 9136 (2003) + RI-JK Method: + A fully direct RI-HF algorithm: Implementation, + optimised auxiliary basis sets, demonstration of + accuracy and efficiency + F. Weigend + Phys. Chem. Chem. Phys. 4: 4285 (2002) + Two-component HF and DFT with spin-orbit coupling: + Self-consistent treatment of spin-orbit + interactions with efficient Hartree-Fock and + density functional methods + M. K. Armbruster, F. Weigend, C. van Wüllen and + W. Klopper + Phys. Chem. Chem. Phys. 10: 1748 (2008) + Two-component difference density and DIIS algorithm + Efficient two-component self-consistent field + procedures and gradients: implementation in + TURBOMOLE and application to Au20- + A. Baldes, F. Weigend + Mol. Phys. 111: 2617 (2013) + Relativistic all-electron 2c calculations + An efficient implementation of two-component + relativistic exact-decoupling methods for large + molecules + D. Peng, N. Middendorf, F. Weigend, M. Reiher + J. Chem. Phys. 138: 184105 (2013) + Finite nucleus model and SNSO approximation + Efficient implementation of one- and two- + component analytical energy gradients in exact + two-component theory + Y. J. Franzke, N. Middendorf, F. Weigend + J. Chem. Phys. 148: 104110 (2018) + Grids for all-electron relativistic methods + Error-consistent segmented contracted all- + electron relativistic basis sets of double- + and triple-zeta quality for NMR shielding + constants + Y. J. Franzke, R. Tress, T. M. Pazdera, + F. Weigend + Phys. Chem. Chem. Phys. 21: 166658 (2019) + Seminumerical exchange algorithms + Seminumerical calculation of the Hartree-Fock + exchange matirx: Application to two-component + procedures and efficient evaluation of local + hybrid functionsl + P. Plessow, F. Weigend, + J. Comput. Chem. 33: 810 (2012) + Improved seminumerical algorithms + C. Holzer, + J. Chem. Phys. 153 (2020), 184115 + + + + + + +--------------------------------------------------+ + | general information about current run | + +--------------------------------------------------+ + + + + DENSITY CONVERGENCE CHECK SWITCHED ON ! + SCF CONVERGENCE IF RMS(delta[D]) < 0.1000000000E-06 + + A HF calculation using the RI-JK approximation will be carried out. + Allocatable memory for RI due to $ricore (MB): 500 + + ************************************************************************* + jobex_ridft_rimp2 + ************************************************************************* + + + + + +--------------------------------------------------+ + | Atomic coordinate, charge and isotop information | + +--------------------------------------------------+ + + atomic coordinates atom charge isotop + -0.00000000 0.00000000 -0.74172557 o 8.000 0 + 1.45584870 0.00000000 0.37086279 h 1.000 0 + -1.45584870 0.00000000 0.37086279 h 1.000 0 + + center of nuclear mass : -0.00000000 0.00000000 -0.61722549 + center of nuclear charge: -0.00000000 0.00000000 -0.51920790 + + +--------------------------------------------------+ + | basis set information | + +--------------------------------------------------+ + + we will work with the 1s 3p 5d 7f 9g ... basis set + ...i.e. with spherical basis functions... + + type atoms prim cont basis + --------------------------------------------------------------------------- + o 1 24 14 def-SV(P) [3s2p1d|7s4p1d] + h 2 4 2 def-SV(P) [2s|4s] + --------------------------------------------------------------------------- + total: 3 32 18 + --------------------------------------------------------------------------- + + total number of primitive shells : 16 + total number of contracted shells : 10 + total number of cartesian basis functions : 19 + total number of SCF-basis functions : 18 + + + integral neglect threshold : 0.18E-09 + integral storage threshold THIZE : 0.10E-04 + integral storage threshold THIME : 5 + + RI-JK AUXILIARY BASIS SET information: + + we will work with the 1s 3p 5d 7f 9g ... basis set + ...i.e. with spherical basis functions... + + type atoms prim cont basis + --------------------------------------------------------------------------- + o 1 97 77 def-SV(P) [10s8p4d2f1g|14s10p6d2f1g] + h 2 20 18 def-SV(P) [2s2p2d|4s2p2d] + --------------------------------------------------------------------------- + total: 3 137 113 + --------------------------------------------------------------------------- + + total number of primitive shells : 41 + total number of contracted shells : 37 + total number of cartesian basis functions : 133 + total number of SCF-basis functions : 113 + + + symmetry group of the molecule : c1 + + the group has the following generators : + c1(z) + + 1 symmetry operations found + + there are 1 real representations : a + + maximum number of shells which are related by symmetry : 1 + + + biggest AO integral is expected to be 4.776656448 + + ------------------------ + nuclear repulsion energy : 9.07560426254 + ------------------------ + + + ----------------- + -S,T+V- integrals + ----------------- + + 1e-integrals will be neglected if expon. factor < 0.175893E-10 + + Difference densities algorithm switched on. + The maximal number of linear combinations of + difference densities is 20 . + + DIIS switched on: error vector is FDS-SDF + Max. Iterations for DIIS is : 5 + DIIS matrix (see manual) + Scaling factor of diagonals : 1.200 + threshold for scaling factor : 0.000 + + scf convergence criterion : increment of total energy < .1000000D-06 + and increment of one-electron energy < .1000000D-03 + + MOs are in ASCII format ! + + + mo occupation : + irrep mo's occupied + a 18 5 + + number of basis functions : 18 + number of occupied orbitals : 5 + + + reading orbital data $scfmo from file mos + orbital characterization : scfconv=7 + mo-orthogonalization by Cholesky decomposition + + automatic virtual orbital shift switched on + shift if e(lumo)-e(homo) < 0.10000000 + + + ------------------------ + RI-JK - INFORMATION + ------------------------ + Contributions to RI integral batches: + neglected integral batches: 0 + direct contribution: 0 + memory contribution: 55 + Memory core needed for (P|Q) and Cholesky 1 MByte + Memory core minimum needed except of (P|Q) 1 MByte + Total minimum memory core needed (sum) 1 MByte + + **************************************** + Memory allocated for RI-J 1 MByte + **************************************** + + total memory allocated for calculation of (Q|P)**(-1/2) : 1 MiB + + forming (P|Q)**(-1/2) + eigenvalues of original matrix + smallest =0.1008638429278E-05 largest = 10.70260504881 + The symmetry information takes 1 MB + + DSCF restart information will be dumped onto file mos + + + Starting SCF iterations + + + BLOCKING OF MOS FOR RI-K + + + occupied MOs partitioned into blocks of maximum length 5 + this requires 1 MiB core memory. + + MULTIPLE PASS Statistics + ---------------------------------------------------- + pass irrep lambda batch : MO to MO + ---------------------------------------------------- + 1 1 -> 1 1 -> 5 1 -> 5 + + + + ITERATION ENERGY 1e-ENERGY 2e-ENERGY RMS[dD(SAO)] TOL + 1 -75.937654280314 -122.75545885 37.742200304 0.000D+00 0.175D-09 + RI-K = -8.93287947665 Coul = 46.6750797806 + current damping = 0.300 + + max. resid. norm for Fia-block= 8.130D-06 for orbital 3a + max. resid. fock norm = 1.402D-05 for orbital 14a + + ITERATION ENERGY 1e-ENERGY 2e-ENERGY RMS[dD(SAO)] TOL + 2 -75.937654280488 -122.75540741 37.742148868 0.121D-05 0.111D-09 + RI-K = -8.93287281732 Coul = 46.6750216855 + current damping = 0.300 + + Norm of current diis error: 0.98964E-05 + max. resid. norm for Fia-block= 2.903D-06 for orbital 4a + max. resid. fock norm = 4.442D-06 for orbital 9a + + ENERGY & DENSITY CONVERGED ! + + + ITERATION ENERGY 1e-ENERGY 2e-ENERGY RMS[dD(SAO)] TOL + 3 -75.937654280521 -122.75541906 37.742160515 0.542D-06 0.891D-10 + RI-K = -8.93287451427 Coul = 46.6750350294 + current damping = 0.350 + + Norm of current diis error: 0.49555E-05 + max. resid. norm for Fia-block= 1.824D-06 for orbital 4a + max. resid. fock norm = 1.843D-06 for orbital 4a + + End of SCF iterations + + convergence criteria satisfied after 3 iterations + + + ************************************************************************* + jobex_ridft_rimp2 + ************************************************************************* + + + ------------------------------------------ + | total energy = -75.93765428052 | + ------------------------------------------ + : kinetic energy = 75.83507472686 : + : potential energy = -151.77272900738 : + : virial theorem = 1.99864916089 : + : wavefunction norm = 1.00000000000 : + .......................................... + + + orbitals $scfmo will be written to file mos + + irrep 1a 2a 3a 4a 5a + eigenvalues H -20.54478 -1.31775 -0.70460 -0.56738 -0.50104 + eV -559.0564 -35.8582 -19.1733 -15.4392 -13.6341 + occupation 2.0000 2.0000 2.0000 2.0000 2.0000 + + irrep 6a 7a 8a 9a 10a + eigenvalues H 0.17142 0.25191 0.80234 0.91212 1.19882 + eV 4.6646 6.8548 21.8329 24.8203 32.6219 + + + + + ============================================================================== + electrostatic moments + ============================================================================== + + reference point for electrostatic moments: 0.00000 0.00000 0.00000 + + + nuc elec -> total + ------------------------------------------------------------------------------ + charge + ------------------------------------------------------------------------------ + 10.000000 -10.000000 -0.000000 + + ------------------------------------------------------------------------------ + dipole moment + ------------------------------------------------------------------------------ + x -0.000000 0.000000 0.000000 + y 0.000000 -0.000000 -0.000000 + z -5.192079 6.087197 0.895118 + + | dipole moment | = 0.8951 a.u. = 2.2752 debye + + ------------------------------------------------------------------------------ + quadrupole moment + ------------------------------------------------------------------------------ + xx 4.238991 -7.336618 -3.097627 + yy 0.000000 -5.330535 -5.330535 + zz 4.676333 -10.096245 -5.419912 + xy 0.000000 0.000000 0.000000 + xz 0.000000 -0.000000 0.000000 + yz 0.000000 0.000000 0.000000 + + 1/3 trace= -4.616025 + anisotropy= 2.278911 + + ============================================================================== + +HOMO-LUMO Separation + HOMO : -0.50103870 H = -13.63396 eV + LUMO : 0.17141883 H = +4.66455 eV + HOMO-LUMO gap: 0.67245753 H = +18.29851 eV + + ============================================================================== + + + ------------------------------------------------------------------------ + total cpu-time : 0.10 seconds + total wall-time : 0.82 seconds + ------------------------------------------------------------------------ + + **** ridft : all done **** + + + 2023-01-25 00:20:28.107 + +fine, there is no data group "$actual step" +next step = ricc2 + + WARNING : length of argument string +/projects/matgenix/COMMON/software/TURBOMOLE/evaluation_license/TURBOMOLE_76/bin/em64t-unknown-linux-gnu + exceeds 80 characters + argument will be ignored! + + + ricc2 (frontal3) : TURBOMOLE rev. V7-6 19 Oct 2021 at 10:10:11 compiled Oct 19th 2021 + Copyright (C) 2021 TURBOMOLE GmbH, Karlsruhe + + + 2023-01-25 00:20:28.255 + + unknown argument: "-l" + unknown argument: " + + " + + + R I C C 2 - PROGRAM + + the quantum chemistry groups + at the universities in + Karlsruhe & Bochum + Germany + + + + *-----------------------------------------------------------------------* + | program will use 1 thread(s) | + *-----------------------------------------------------------------------* + + + +--------------------------------------------------+ + | Atomic coordinate, charge and isotop information | + +--------------------------------------------------+ + + atomic coordinates atom charge isotop + -0.00000000 0.00000000 -0.74172557 o 8.000 0 + 1.45584870 0.00000000 0.37086279 h 1.000 0 + -1.45584870 0.00000000 0.37086279 h 1.000 0 + + center of nuclear mass : -0.00000000 0.00000000 -0.61722549 + center of nuclear charge: -0.00000000 0.00000000 -0.51920790 + + ************************************************************************* + jobex_ridft_rimp2 + ************************************************************************* + + + + +--------------------------------------------------+ + | basis set information | + +--------------------------------------------------+ + + we will work with the 1s 3p 5d 7f 9g ... basis set + ...i.e. with spherical basis functions... + + type atoms prim cont basis + --------------------------------------------------------------------------- + o 1 24 14 def-SV(P) [3s2p1d|7s4p1d] + h 2 4 2 def-SV(P) [2s|4s] + --------------------------------------------------------------------------- + total: 3 32 18 + --------------------------------------------------------------------------- + + total number of primitive shells : 16 + total number of contracted shells : 10 + total number of cartesian basis functions : 19 + total number of SCF-basis functions : 18 + + + symmetry group of the molecule : c1 + + the group has the following generators : + c1(z) + + 1 symmetry operations found + + there are 1 real representations : a + + + ========================================================================= + + + restricted closed shell calculation for the wavefunction models: + MP2 - Second Order Moeller Plesset PT + + + global parameters for ricc2 program: + + hard restart (reuse of interm.) : disabled + soft restart (reuse of vectors) : disabled + threshold for vector function : 0.100000E-05 + convergence threshold energy : 0.100000E-06 + linear dependence threshold : 0.100000E-13 + global print level : 1 + maximum number of iterations : 200 + maximum number DIIS vectors : 10 + max. dim. of reduced space : 100 + core memory limit (MB) : 500 + + + this is a ground state geometry optimization run at the MP2 level + + Scratch Directory : + + + ========================================================================= + + der. integral neglect threshold : 0.10E-07 + integral neglect threshold : 0.18E-09 + integral storage threshold THIZE : 0.10E-04 + integral storage threshold THIME : 5 + + + +---------------------------------------------+ + | RI-SCF/CPHF auxiliary basis set information | + +---------------------------------------------+ + + we will work with the 1s 3p 5d 7f 9g ... basis set + ...i.e. with spherical basis functions... + + type atoms prim cont basis + --------------------------------------------------------------------------- + o 1 97 77 def-SV(P) [10s8p4d2f1g|14s10p6d2f1g] + h 2 20 18 def-SV(P) [2s2p2d|4s2p2d] + --------------------------------------------------------------------------- + total: 3 137 113 + --------------------------------------------------------------------------- + + total number of primitive shells : 41 + total number of contracted shells : 37 + total number of cartesian basis functions : 133 + total number of SCF-basis functions : 113 + + + +------------------------------------------+ + | Auxiliary basis set information | + +------------------------------------------+ + + we will work with the 1s 3p 5d 7f 9g ... basis set + ...i.e. with spherical basis functions... + + type atoms prim cont basis + --------------------------------------------------------------------------- + o 1 72 48 def-SV(P) [6s5p4d1f|8s6p5d3f] + h 2 23 14 def-SV(P) [3s2p1d|4s3p2d] + --------------------------------------------------------------------------- + total: 3 118 76 + --------------------------------------------------------------------------- + + total number of primitive shells : 31 + total number of contracted shells : 28 + total number of cartesian basis functions : 85 + total number of SCF-basis functions : 76 + + + maximum number of shells which are related by symmetry : 1 + + + The symmetry information takes 1 MB + +*---------------------------------------------------------------------* +| simplified C1 algorithm will be applied | +*---------------------------------------------------------------------* + MOs are in ASCII format ! + + + reading orbital data $scfmo from file mos + orbital characterization : scfconv=7 + time elapsed for calculating density matrices : 0.000 sec + + + + +--------------------------------------------+ + | list of orbitals that will be kept frozen: | + +--------------------------------------------+ + | irrep index energy occ/vir | + +--------------------------------------------+ + | a 1 -20.5448 occupied | + +--------------------------------------------+ + + + + Molecular Orbital Statistic: + ============================ + + ----------------------------- + orbitals in total: + ----------------------------- + frozen occupied : 1 + active occupied : 4 + active virtual : 13 + frozen virtual : 0 + all together : 18 + ----------------------------- + + + time in riccmos cpu: 0.00 sec wall: 0.08 sec ratio: 0.1 + + total memory allocated for calculation of (Q|P)**(-1/2) : 1 MiB + + + calculation of (P|Q) ... + time in lp2sym cpu: 0.00 sec wall: 0.00 sec ratio: 1.4 + + + calculation of the Cholesky decomposition of (P|Q)**(-1) ... + time in invmetri cpu: 0.00 sec wall: 0.03 sec ratio: 0.1 + + threshold for RMS(d[D]) in SCF was : 0.10E-06 + integral neglect threshold : 0.18E-09 + derivative integral neglect threshold : 0.10E-07 + + + setting up bound for integral derivative estimation + + increment for numerical differentiation : 0.00050000 + + ========================================================================= + + Energy of reference wave function is -75.9376542805200 + Maximum orbital residual is 0.1842526067255E-05 + + + Number of symmetry-nonredundant auxiliary basis functions: 76 + + Block lengths for integral files: + frozen occupied (BOI): 1 MiB + active occupied (BJI): 1 MiB + active virtual (BAI): 1 MiB + frozen virtual (BGI): 0 MiB + general (BTI): 1 MiB + + ========================================================================= + + + + A RI-SCF based gradient calculation will be done. + A "jkbas" type auxiliary basis is used for RI-SCF and/or RI-CPHF. + + The semi-canonical algorithm will be used for densities + + + ======== CC DENSITY MODULE ======== + + current wave-function model: MP2 + + calculating CC ground state density + + a semicanonical algorithm will be used when possible + + density nr. cpu/min wall/min L R + ------------------------------------------------------ + 1 0.00 0.00 L0 R0 + ------------------------------------------------------ + time in cc_1den cpu: 0.01 sec wall: 0.16 sec ratio: 0.1 + + reading orbital data $scfmo from file mos + orbital characterization : scfconv=7 + + EMP2 : -76.126357483129 + EMP2 from traces: -76.126357483129 + Delta : 0.000000000000 + + -------------------------------------------------------------------------- + + Solving RI-CPHF equations using a "jkbas" type auxiliary basis + + + ======== LINEAR CC RESPONSE SOLVER ======== + + threshold for convergence: 1.00E-05 + maximum number of simultaneous Jacobi matrix transformations: 1 + + summary of start vectors generation: + ------------------------------------------- + type of solution vectors : l0o + symmetry : a + number of vectors requested : 1 + number of vectors generated : 1 + ------------------------------------------- + + + Iter #Vectors time (min) max. residual + -------------------------------------------- + 1 1 0.00 0.17E+00 ( 1) + 2 1 0.00 0.43E-01 ( 1) + 3 1 0.00 0.79E-02 ( 1) + 4 1 0.01 0.13E-02 ( 1) + 5 1 0.01 0.35E-03 ( 1) + 6 1 0.00 0.49E-04 ( 1) + 7 1 0.00 0.98E-05 ( 1) + -------------------------------------------- + converged in 7 iterations + + Total time 0.04 minutes + + + =========================================== + + + -------------------------------------------------------------------------- + + 1e-integral 1st. derivatives will be neglected if expon. factor < 0.100000E-11 + + + + +--------------------------------------------------------------------+ + | MP2 unrelaxed natural orbital occupation numbers | + +--------------------------------------------------------------------+ + | natural orb. | occupation numbers | + +---------------+----------------------------------------------------+ + | a | | + | 1 - 5 | 2.0000 1.9868 1.9753 1.9718 1.9706 | + | 6 - 10 | 0.0239 0.0221 0.0175 0.0108 0.0046 | + | 11 - 14 | 0.0042 0.0035 0.0033 0.0032 | + +---------------+----------------------------------------------------+ + natural orbitals with occ < 0.10E-02 are not shown + + Maximum change in occupation number: + occupied : -1.47 % ( 5 a ) + virtual : 1.19 % ( 6 a ) + + + +--------------------------------------------------------------------+ + | MP2 relaxed natural orbital occupation numbers | + +--------------------------------------------------------------------+ + | natural orb. | occupation numbers | + +---------------+----------------------------------------------------+ + | a | | + | 1 - 5 | 2.0000 1.9868 1.9754 1.9720 1.9709 | + | 6 - 10 | 0.0238 0.0221 0.0175 0.0108 0.0046 | + | 11 - 14 | 0.0042 0.0035 0.0033 0.0032 | + +---------------+----------------------------------------------------+ + natural orbitals with occ < 0.10E-02 are not shown + + Maximum change in occupation number: + occupied : -1.46 % ( 5 a ) + virtual : 1.19 % ( 6 a ) + + + ************************************************************** + * * + *<<<<<<<<<< GROUND STATE FIRST-ORDER PROPERTIES >>>>>>>>>>>* + * * + ************************************************************** + + + ------------------------------------------------ + Method : MP2 + Total Energy : -76.1263574831 + ------------------------------------------------ + + + ------------------------------------------------ + moments of inertia + 2.216 4.273 6.489 in a.u. + + rotational constants + 27.16354 14.08913 9.27723 in cm**(-1) + ------------------------------------------------ + + + NOTE: unrelaxed properties printed below refer to the MP1 wavefunction and + are only correct through first order in the fluctuation potential! + + +===========================================================================+ + | OPERATOR | EXPECTAT. VALUE | ELECTRONIC CONT. | NUCLEAR CONTRIB. | + +==================+==================+==================+==================+ + | | | | | + | xdiplen (unrel) | 0.00000000 | 0.00000000 | -0.00000000 | + | xdiplen (relax) | 0.00000000 | 0.00000000 | -0.00000000 | + | | | | | + | ydiplen (unrel) | -0.00000000 | -0.00000000 | 0.00000000 | + | ydiplen (relax) | -0.00000000 | -0.00000000 | 0.00000000 | + | | | | | + | zdiplen (unrel) | 0.89119946 | 6.08327846 | -5.19207900 | + | zdiplen (relax) | 0.88505921 | 6.07713821 | -5.19207900 | + | | | | | + | xxqudlen (unrel) | -3.13621909 | -7.37520999 | 4.23899090 | + | xxqudlen (relax) | -3.16740121 | -7.40639211 | 4.23899090 | + | | | | | + | xyqudlen (unrel) | 0.00000000 | 0.00000000 | 0.00000000 | + | xyqudlen (relax) | 0.00000000 | 0.00000000 | 0.00000000 | + | | | | | + | xzqudlen (unrel) | 0.00000000 | -0.00000000 | 0.00000000 | + | xzqudlen (relax) | 0.00000000 | -0.00000000 | 0.00000000 | + | | | | | + | yyqudlen (unrel) | -5.35629156 | -5.35629156 | 0.00000000 | + | yyqudlen (relax) | -5.37974844 | -5.37974844 | 0.00000000 | + | | | | | + | yzqudlen (unrel) | 0.00000000 | 0.00000000 | 0.00000000 | + | yzqudlen (relax) | 0.00000000 | 0.00000000 | 0.00000000 | + | | | | | + | zzqudlen (unrel) | -5.44615511 | -10.12248810 | 4.67633300 | + | zzqudlen (relax) | -5.46023104 | -10.13656404 | 4.67633300 | + | | | | | + +===========================================================================+ + + + Analysis of relaxed properties: + =============================== + + + dipole moment: + -------------- + + x 0.00000000 + y -0.00000000 + z 0.88505921 + + | dipole moment | = 0.88505921 a.u. = 2.24959612 debye + + + traceless quadrupole tensor: + ---------------------------- + + x y z + + x 2.25258853 0.00000000 0.00000000 + y -1.06593231 0.00000000 + z -1.18665622 + + + principal axes of tensor: + + x' = ( 1.0000000, 0.0000000, 0.0000000 ) + y' = ( 0.0000000, 1.0000000, 0.0000000 ) + z' = ( -0.0000000, 0.0000000, 1.0000000 ) + + < Q(x'x') > = 2.25258853 a.u. + < Q(y'y') > = -1.06593231 a.u. + < Q(z'z') > = -1.18665622 a.u. + + + second moment of electron density: + ---------------------------------- + + x y z + + x 7.40639211 -0.00000000 0.00000000 + y 5.37974844 -0.00000000 + z 10.13656404 + + + principal axes of tensor: + + x' = ( 1.0000000, 0.0000000, -0.0000000 ) + y' = ( 0.0000000, 1.0000000, 0.0000000 ) + z' = ( 0.0000000, 0.0000000, 1.0000000 ) + + < x'x'> = 7.40639211 a.u. + < y'y'> = 5.37974844 a.u. + < z'z'> = 10.13656404 a.u. + + Isotropic second moment: alpha = 7.64090153 a.u. + + Anisotropy of second moment: beta = 4.13451436 a.u. + + + -------------------------------------------------------------------------- + + + Analysis of unrelaxed properties: + ================================= + + + dipole moment: + -------------- + + x 0.00000000 + y -0.00000000 + z 0.89119946 + + | dipole moment | = 0.89119946 a.u. = 2.26520306 debye + + + traceless quadrupole tensor: + ---------------------------- + + x y z + + x 2.26500424 0.00000000 0.00000000 + y -1.06510446 0.00000000 + z -1.19989978 + + + principal axes of tensor: + + x' = ( 1.0000000, 0.0000000, 0.0000000 ) + y' = ( 0.0000000, 1.0000000, 0.0000000 ) + z' = ( -0.0000000, 0.0000000, 1.0000000 ) + + < Q(x'x') > = 2.26500424 a.u. + < Q(y'y') > = -1.06510446 a.u. + < Q(z'z') > = -1.19989978 a.u. + + + second moment of electron density: + ---------------------------------- + + x y z + + x 7.37520999 -0.00000000 0.00000000 + y 5.35629156 -0.00000000 + z 10.12248810 + + + principal axes of tensor: + + x' = ( 1.0000000, 0.0000000, -0.0000000 ) + y' = ( 0.0000000, 1.0000000, 0.0000000 ) + z' = ( 0.0000000, 0.0000000, 1.0000000 ) + + < x'x'> = 7.37520999 a.u. + < y'y'> = 5.35629156 a.u. + < z'z'> = 10.12248810 a.u. + + Isotropic second moment: alpha = 7.61799655 a.u. + + Anisotropy of second moment: beta = 4.14368183 a.u. + + + ------------------------------ + total gradient of MP2 energy + ------------------------------ + + ------------------------------------------------ + cartesian gradient of the energy (hartree/bohr) + ------------------------------------------------ + + ATOM 1 o 2 h 3 h +dE/dx -0.1451481D-13 0.6738746D-07 -0.6738745D-07 +dE/dy -0.5082223D-13 0.2533680D-13 0.2548543D-13 +dE/dz 0.1680615D-06 -0.8403068D-07 -0.8403068D-07 + + resulting FORCE (fx,fy,fz) = (-.430D-14,0.631D-29,0.168D-12) + resulting MOMENT (mx,my,mz) = (-.565D-13,0.971D-14,-.216D-15) + + + ********************************************************************** + |maximum component of gradient| : 0.16806153E-06 (atom 1 o ) + gradient norm : 0.22682400E-06 + ********************************************************************** + + *** orbital-relaxed dipole moment written to *** + + *** cartesian gradients written onto *** + + ============================================================================== + + Exporting ground state density + + + ------------------------------------------------------------------------ + total cpu-time : 0.36 seconds + total wall-time : 4.52 seconds + ------------------------------------------------------------------------ + + **** ricc2 : all done **** + + + 2023-01-25 00:20:32.733 + +fine, there is no data group "$actual step" +next step = relax + energy change : actual value = -0.1800E-08 threshold = 0.1000E-05 + geom. gradient : actual value = 0.1671E-04 threshold = 0.1000E-02 + +CONVERGENCY CRITERIA FULFILLED IN CYCLE 7 + diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/jobex/h2o_mp2_ridft_rimp2/ref_output.json b/turbomoleio/testfiles/outputs/TM_v7.6/jobex/h2o_mp2_ridft_rimp2/ref_output.json new file mode 100644 index 0000000..db9d8ba --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/jobex/h2o_mp2_ridft_rimp2/ref_output.json @@ -0,0 +1,368 @@ +{ + "@module": "turbomoleio.output.files", + "@class": "JobexOutput", + "@version": "1.3.0", + "energy": { + "@module": "turbomoleio.output.files", + "@class": "ScfOutput", + "@version": "1.3.0", + "dft": { + "@module": "turbomoleio.output.data", + "@class": "DFTData", + "@version": "1.3.0", + "functional": null, + "ri": { + "@module": "turbomoleio.output.data", + "@class": "RiData", + "@version": "1.3.0", + "ricore": 500, + "marij": false, + "rij_memory": 1, + "rik": true + }, + "spherical_gridsize": null, + "gridpoints": null, + "dispersion_correction": null + }, + "scf": { + "@module": "turbomoleio.output.data", + "@class": "ScfData", + "@version": "1.3.0", + "iterations": { + "@module": "turbomoleio.output.data", + "@class": "ScfIterationData", + "@version": "1.3.0", + "energies": [ + -75.937654280314, + -75.937654280488, + -75.937654280521 + ], + "first_index": 1, + "n_steps": 3, + "dampings": [ + 0.3, + 0.3, + 0.35 + ], + "converged": true + }, + "diis": true, + "diis_error_vect": "FDS-SDF", + "conv_tot_en": 1e-07, + "conv_one_e_en": 0.0001, + "virtual_orbital_shift_on": true, + "virtual_orbital_shift_limit": 0.1, + "orbital_characterization": "scfconv=7", + "restart_file": "mos", + "n_occupied_orbitals": 5 + }, + "energies": { + "@module": "turbomoleio.output.data", + "@class": "ScfEnergiesData", + "@version": "1.3.0", + "total_energy": -75.93765428052, + "kinetic_energy": 75.83507472686, + "potential_energy": -151.77272900738, + "virial_theorem": 1.99864916089, + "wavefunction_norm": 1.0, + "coulomb_energy": null, + "xc_energy": null, + "ts_energy": null, + "free_energy": null, + "sigma0_energy": null + }, + "electrostatic": { + "@module": "turbomoleio.output.data", + "@class": "ElectrostaticMomentsData", + "@version": "1.3.0", + "charge": -0.0, + "unrestricted_electrons": null, + "dipole_vector": [ + 0.0, + -0.0, + 0.895118 + ], + "dipole_norm": 0.8951, + "quadrupole_tensor": [ + [ + -3.097627, + 0.0, + 0.0 + ], + [ + 0.0, + -5.330535, + 0.0 + ], + [ + 0.0, + 0.0, + -5.419912 + ] + ], + "quadrupole_trace": -13.848074999999998, + "quadrupole_anisotropy": 2.278911 + }, + "geometry": { + "@module": "turbomoleio.output.data", + "@class": "GeometryData", + "@version": "1.3.0", + "center_of_mass": [ + -0.0, + 0.0, + -0.61722549 + ], + "center_of_charge": [ + -0.0, + 0.0, + -0.5192079 + ], + "molecule": { + "@module": "pymatgen.core.structure", + "@class": "Molecule", + "charge": 0.0, + "spin_multiplicity": 1, + "sites": [ + { + "name": "O", + "species": [ + { + "element": "O", + "occu": 1 + } + ], + "xyz": [ + -0.0, + 0.0, + -0.3925042683880378 + ], + "properties": {} + }, + { + "name": "H", + "species": [ + { + "element": "H", + "occu": 1 + } + ], + "xyz": [ + 0.7704019545627583, + 0.0, + 0.19625213683990497 + ], + "properties": {} + }, + { + "name": "H", + "species": [ + { + "element": "H", + "occu": 1 + } + ], + "xyz": [ + -0.7704019545627583, + 0.0, + 0.19625213683990497 + ], + "properties": {} + } + ] + } + }, + "basis": { + "@module": "turbomoleio.output.data", + "@class": "BasisData", + "@version": "1.3.0", + "basis_per_specie": { + "o": "def-SV(P)", + "h": "def-SV(P)" + }, + "aux_basis_per_specie": { + "o": "def-SV(P)", + "h": "def-SV(P)" + }, + "number_scf_basis_func": 18, + "number_scf_aux_basis_func": 113 + }, + "run": { + "@module": "turbomoleio.output.data", + "@class": "RunData", + "@version": "1.3.0", + "host": "frontal3", + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:20:27.345000" + }, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:20:28.107000" + }, + "cpu_time": 0.1, + "wall_time": 0.82 + }, + "tm": { + "@module": "turbomoleio.output.data", + "@class": "TurbomoleData", + "@version": "1.3.0", + "version": "7.6", + "build": null, + "executable": "ridft" + }, + "cosmo": null, + "spin": { + "@module": "turbomoleio.output.data", + "@class": "SpinData", + "@version": "1.3.0", + "unrestricted": false, + "s2": null + }, + "integral": { + "@module": "turbomoleio.output.data", + "@class": "IntegralData", + "@version": "1.3.0", + "integral_neglect_threshold": 1.8e-10, + "thize": 1e-05, + "thime": 5 + }, + "smearing": null, + "symmetry": { + "@module": "turbomoleio.output.data", + "@class": "SymmetryData", + "@version": "1.3.0", + "symbol": "c1", + "n_reps": 1, + "reps": [ + "a" + ] + }, + "periodicity": null + }, + "gradient": { + "@module": "turbomoleio.output.files", + "@class": "Ricc2Output", + "@version": "1.3.0", + "mp2": { + "@module": "turbomoleio.output.data", + "@class": "MP2Results", + "@version": "1.3.0", + "energy": -76.1263574831 + }, + "run": { + "@module": "turbomoleio.output.data", + "@class": "RunData", + "@version": "1.3.0", + "host": "frontal3", + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:20:28.255000" + }, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:20:32.733000" + }, + "cpu_time": 0.36, + "wall_time": 4.52 + }, + "tm": { + "@module": "turbomoleio.output.data", + "@class": "TurbomoleData", + "@version": "1.3.0", + "version": "7.6", + "build": null, + "executable": "ricc2" + } + }, + "relax": { + "@module": "turbomoleio.output.files", + "@class": "StatptOutput", + "@version": "1.3.0", + "info": { + "@module": "turbomoleio.output.data", + "@class": "StatptData", + "@version": "1.3.0", + "max_trust_radius": 0.3, + "min_trust_radius": 0.001, + "init_trust_radius": 0.15, + "min_grad_norm_for_gdiis": 0.01, + "prev_steps_for_gdiis": 5, + "hessian_update_method": "BFGS", + "thr_energy_change": 1e-06, + "thr_max_displ": 0.001, + "thr_max_grad": 0.001, + "thr_rms_displ": 0.0005, + "thr_rms_grad": 0.0005, + "use_defaults": true, + "final_step_radius": null + }, + "gradients": { + "@module": "turbomoleio.output.data", + "@class": "RelaxGradientsData", + "@version": "1.3.0", + "norm_cartesian": 2.30264e-05, + "norm_internal": null, + "max_internal": null + }, + "convergence": { + "@module": "turbomoleio.output.data", + "@class": "RelaxConvergenceData", + "@version": "1.3.0", + "energy_change": { + "value": 0.0, + "thr": 1e-06, + "conv": true + }, + "rms_displ": { + "value": 9.4e-06, + "thr": 0.0005, + "conv": true + }, + "max_displ": { + "value": 2.29e-05, + "thr": 0.001, + "conv": true + }, + "rms_grad": { + "value": 7.7e-06, + "thr": 0.0005, + "conv": true + }, + "max_grad": { + "value": 1.67e-05, + "thr": 0.001, + "conv": true + } + }, + "run": { + "@module": "turbomoleio.output.data", + "@class": "RunData", + "@version": "1.3.0", + "host": "frontal3", + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:20:26.906000" + }, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:20:27.178000" + }, + "cpu_time": 0.03, + "wall_time": 0.31 + }, + "tm": { + "@module": "turbomoleio.output.data", + "@class": "TurbomoleData", + "@version": "1.3.0", + "version": "7.6", + "build": null, + "executable": "statpt" + } + } +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/jobex/h2o_mp2_ridft_rimp2/ref_parser.json b/turbomoleio/testfiles/outputs/TM_v7.6/jobex/h2o_mp2_ridft_rimp2/ref_parser.json new file mode 100644 index 0000000..e89fff9 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/jobex/h2o_mp2_ridft_rimp2/ref_parser.json @@ -0,0 +1,269 @@ +{ + "all_done": true, + "header": { + "executable": "statpt", + "host": "frontal3", + "tm_version": "7.6", + "tm_build": null, + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:20:26.906000" + } + }, + "centers": { + "center_of_mass": [ + 0.0, + 0.0, + -0.61720642 + ], + "center_of_charge": [ + 0.0, + 0.0, + -0.51919187 + ] + }, + "coordinates": { + "coords": [ + [ + 0.0, + 0.0, + -0.74170266 + ], + [ + 1.45584603, + 0.0, + 0.37085133 + ], + [ + -1.45584603, + 0.0, + 0.37085133 + ] + ], + "species": [ + "o", + "h", + "h" + ], + "charges": [ + 8.0, + 1.0, + 1.0 + ], + "isotopes": [ + 0, + 0, + 0 + ] + }, + "basis": { + "basis_per_specie": { + "o": "def-SV(P)", + "h": "def-SV(P)" + }, + "aux_basis_per_specie": { + "o": "def-SV(P)", + "h": "def-SV(P)" + }, + "number_scf_basis_func": 18, + "number_scf_aux_basis_func": 113 + }, + "symmetry": { + "symbol": "c1", + "n_reps": 1, + "reps": [ + "a" + ] + }, + "cosmo_header": null, + "density_functional_data": null, + "rij_info": { + "marij": false, + "rij_memory": 1, + "rik": true, + "ricore": 500 + }, + "dftd": null, + "pre_scf_run": { + "diis": true, + "diis_error_vect": "FDS-SDF", + "conv_tot_en": 1e-07, + "conv_one_e_en": 0.0001, + "virtual_orbital_shift_on": true, + "virtual_orbital_shift_limit": 0.1, + "orbital_characterization": "scfconv=7", + "restart_file": "mos", + "n_occupied_orbitals": 5 + }, + "scf_iterations": { + "energies": [ + -75.937654280314, + -75.937654280488, + -75.937654280521 + ], + "first_index": 1, + "n_steps": 3, + "dampings": [ + 0.3, + 0.3, + 0.35 + ], + "converged": true + }, + "scf_energies": { + "total_energy": -75.93765428052, + "kinetic_energy": 75.83507472686, + "potential_energy": -151.77272900738, + "virial_theorem": 1.99864916089, + "wavefunction_norm": 1.0 + }, + "cosmo_results": null, + "electrostatic_moments": { + "unrestricted_electrons": null, + "charge": -0.0, + "dipole": { + "norm": 0.8951, + "moment": [ + 0.0, + -0.0, + 0.895118 + ] + }, + "quadrupole": { + "trace": -13.848074999999998, + "anisotropy": 2.278911, + "moment": [ + [ + -3.097627, + 0.0, + 0.0 + ], + [ + 0.0, + -5.330535, + 0.0 + ], + [ + 0.0, + 0.0, + -5.419912 + ] + ] + } + }, + "timings": { + "cpu_time": 0.03, + "wall_time": 0.31, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:20:27.178000" + } + }, + "s2": null, + "is_uhf": false, + "fermi": null, + "integral": { + "integral_neglect_threshold": 1.8e-10, + "thize": 1e-05, + "thime": 5 + }, + "pre_escf_run": null, + "escf_iterations": null, + "escf_gs_total_en": null, + "escf_excitations": null, + "rdgrad_memory": null, + "gradient": { + "gradients": [ + [ + -1.451481e-14, + -5.082223e-14, + 1.680615e-07 + ], + [ + 6.738746e-08, + 2.53368e-14, + -8.403068e-08 + ], + [ + -6.738745e-08, + 2.548543e-14, + -8.403068e-08 + ] + ], + "dielectric": [ + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ] + ] + }, + "egrad_excited_state": null, + "statpt_info": { + "max_trust_radius": 0.3, + "min_trust_radius": 0.001, + "init_trust_radius": 0.15, + "min_grad_norm_for_gdiis": 0.01, + "prev_steps_for_gdiis": 5, + "hessian_update_method": "BFGS", + "thr_energy_change": 1e-06, + "thr_max_displ": 0.001, + "thr_max_grad": 0.001, + "thr_rms_displ": 0.0005, + "thr_rms_grad": 0.0005, + "use_defaults": true, + "final_step_radius": null + }, + "relax_info": null, + "relax_gradient_values": { + "norm_cartesian": 2.30264e-05, + "norm_internal": null, + "max_internal": null + }, + "relax_conv_info": { + "energy_change": { + "value": 0.0, + "thr": 1e-06, + "conv": true + }, + "rms_displ": { + "value": 9.4e-06, + "thr": 0.0005, + "conv": true + }, + "rms_grad": { + "value": 7.7e-06, + "thr": 0.0005, + "conv": true + }, + "max_displ": { + "value": 2.29e-05, + "thr": 0.001, + "conv": true + }, + "max_grad": { + "value": 1.67e-05, + "thr": 0.001, + "conv": true + } + }, + "aoforce_numerical_integration": null, + "aoforce_analysis": null, + "mp2_results": { + "energy": -76.1263574831 + }, + "riper_scf_energies": null, + "periodicity_data": null +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/jobex/no3_ridft/job.last b/turbomoleio/testfiles/outputs/TM_v7.6/jobex/no3_ridft/job.last new file mode 100644 index 0000000..013f85e --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/jobex/no3_ridft/job.last @@ -0,0 +1,900 @@ + +OPTIMIZATION CYCLE 4 +mer 25 gen 2023, 00.19.37, CET + + WARNING : length of argument string +/projects/matgenix/COMMON/software/TURBOMOLE/evaluation_license/TURBOMOLE_76/bin/em64t-unknown-linux-gnu + exceeds 80 characters + argument will be ignored! + + + rdgrad (frontal3) : TURBOMOLE rev. V7-6 19 Oct 2021 at 10:10:11 compiled Oct 19th 2021 + Copyright (C) 2021 TURBOMOLE GmbH, Karlsruhe + + + 2023-01-25 00:19:37.564 + + + UHF modus switched on ! + + + r d g r a d + + gradient for ridft program + + by K.Eichkorn, O.Treutler, H.Oehm, + M.Haeser and R.Ahlrichs + (Chemical Physics Letters 242 (1995) 652-660) + parallel version: M.v.Arnim & R.Ahlrichs + quantum chemistry group + university karlsruhe + germany + + + + + References + + Density Functional: + O. Treutler and R. Ahlrichs + Efficient Molecular Numerical Integration Schemes + J. Chem. Phys. 102: 346 (1995) + Parallel Version: + Performance of parallel TURBOMOLE for Density + Functional Calculations + M. v. Arnim and R. Ahlrichs + J. Comp. Chem. 19: 1746 (1998) + RI-J Method: + Auxiliary Basis Sets to approximate Coulomb + Potentials + Chem. Phys. Lett. 240: 283 (1995) + K. Eichkorn, O. Treutler, H. Oehm, M. Haeser + and R. Ahlrichs + Chem. Phys. Lett. 242: 652 (1995) + + Auxiliary Basis Sets for Main Row Atoms and their + Use to approximate Coulomb Potentials + K. Eichkorn, F. Weigend, O. Treutler and + R. Ahlrichs + Theo. Chem. Acc. 97: 119 (1997) + Relativistic Two-component ECP formalism + Efficient two-component self-consistent field + procedures and gradients: implementation in + TURBOMOLE and application to Au20- + A. Baldes and F. Weigend + Mol. Phys. 111: 2617 (2013) + Relativistic all-electron 2c calculations (X2C, DLU) + Efficient implementation of one- and two-component + analytical energy gradients in exact two-component + theory + Y. J. Franzke, N. Middendorf and F. Weigend + J. Chem. Phys. 148: 104110 (2018) + Exploitation of symmetry in scalar X2C response + NMR shielding tensors and chemical shifts in + scalar-relativistic local exact two-component + theory + Y. J. Franzke and F. Weigend + J. Chem. Theory Comput. 15: 1028 (2019) + + + + + ************************************************************************* + ridft + ************************************************************************* + + + + integral neglect threshold : 0.56E-10 + integral storage threshold THIZE : 0.10E-04 + integral storage threshold THIME : 5 + + B-P86 functional + exchange: LDA + Becke (B88) + correlation: LDA (VWN) + Perdew (P86) + A DFT gradient calculation using the RI-J approximation will be carried out. + + + AUXILIARY BASIS SET information: + + symmetry group of the molecule : d3h + + the group has the following generators : + c3(z) + c2(x) + mirror plane sigma(xy) + + 12 symmetry operations found + + there are 6 real representations : a1' a2' e' a1" a2" e" + + maximum number of shells which are related by symmetry : 3 + + + mo occupation : + irrep mo's occupied + a1' 11 4 + a2' 3 1 + e' 13 4 + a1" 1 0 + a2" 5 1 + e" 5 1 + + number of basis functions : 56 + number of occupied orbitals : 16 + + + biggest AO integral is expected to be 4.776656448 + + ------------------ + density functional + ------------------ + B-P86 functional + exchange: LDA + Becke (B88) + correlation: LDA (VWN) + Perdew (P86) + + iterations will be done with small grid + + spherical integration : Lebedev's spherical grid + spherical gridsize : 3 + i.e. gridpoints : 302 + value for diffuse not defined + radial integration : Chebyshev 2nd kind (scaling 3) + radial gridsize : 3 + integration cells : 2 + partition function : becke + partition sharpness : 3 + + grid rotated due to d3 symmetry + + ------------------------ + RDGRAD - INFORMATION + ------------------------ + + Threshold for integral neglect (rithr1): 1E-10 + Threshold for integral neglect (rithr2): 1E-10 + Contributions to RI integral batches: + neglected integral batches: 202 + direct contribution: 98 + + **************************************** + Memory allocated for RDGRAD: 1 MiB + **************************************** + + + + nuclear repulsion energy : 118.545895077 + + MOs are in ASCII format ! + + + reading orbital data $uhfmo_alpha from file alpha + orbital characterization : scfconv=7 + + reading orbital data $uhfmo_beta from file beta + orbital characterization : scfconv=7 + Deviation of MOs from orthonormality 1.061447596484300E-010 + W A R N I N G + Deviation of MOs from orthonormality 1.061644105959658E-010 + W A R N I N G + + ---------------------------------------- + S+T+V CONTRIBUTIONS TO ENERGY GRADIENT + ---------------------------------------- + + 1e-integral 1st. derivatives will be neglected if expon. factor < 0.111586E-12 + + + setting up bound for integral derivative estimation + + increment for numerical differentiation : 0.00050000 + + biggest AO integral is expected to be 4.776656448 + biggest cartesian 1st derivative AO integral is expected to be 8.648821438 + Overall gridpoints after grid construction = 4268 + + Integrated ground state density : 31.00001464373376 + + Integrated ground state spin density: 1.000004195112869 + + + ------------------------------------------------ + cartesian gradient of the energy (hartree/bohr) + ------------------------------------------------ + + ATOM 1 n 2 o 3 o 4 o +dE/dx 0.0000000D+00 0.6026714D-05 0.6026714D-05 -0.1205343D-04 +dE/dy 0.0000000D+00 -0.1043857D-04 0.1043857D-04 0.0000000D+00 +dE/dz 0.0000000D+00 0.0000000D+00 0.0000000D+00 0.0000000D+00 + + resulting FORCE (fx,fy,fz) = (-.178D-14,-.592D-15,0.000D+00) + resulting MOMENT (mx,my,mz) = (0.000D+00,0.000D+00,0.130D-14) + + + exx = -0.000043 eyy = -0.000043 ezz = 0.000000 + eyz = 0.000000 exz = 0.000000 exy = 0.000000 + + + ********************************************************************** + |maximum component of gradient| : 0.12053428E-04 (atom 4 o ) + gradient norm : 0.20877149E-04 + ********************************************************************** + *** cartesian gradients written onto *** + + + --- calculation of the energy gradient finished --- + + + + ------------------------------------------------------------------------ + total cpu-time : 0.11 seconds + total wall-time : 0.33 seconds + ------------------------------------------------------------------------ + + **** rdgrad : all done **** + + + 2023-01-25 00:19:37.838 + +fine, there is no data group "$actual step" +next step = relax + + statpt (frontal3) : TURBOMOLE rev. V7-6 19 Oct 2021 at 10:10:11 compiled Oct 19th 2021 + Copyright (C) 2021 TURBOMOLE GmbH, Karlsruhe + + + 2023-01-25 00:19:38.051 + + + + this is S T A T P T + + + hessian and coordinate update for + stationary point search + + by barbara unterreiner, marek sierka, + and reinhart ahlrichs + + quantum chemistry group + universitaet karlsruhe + germany + + + + + +--------------------------------------------------+ + | Atomic coordinate, charge and isotop information | + +--------------------------------------------------+ + + atomic coordinates atom charge isotop + 0.00000000 0.00000000 0.00000000 n 7.000 0 + -1.17613204 2.03712046 0.00000000 o 8.000 0 + -1.17613204 -2.03712046 0.00000000 o 8.000 0 + 2.35226409 0.00000000 0.00000000 o 8.000 0 + + center of nuclear mass : 0.00000000 0.00000000 0.00000000 + center of nuclear charge: 0.00000000 0.00000000 0.00000000 + Keyword $statpt not found - using default options + + *************** Stationary point options ****************** + ************************************************************ + Maximum allowed trust radius: 3.000000E-01 + Minimum allowed trust radius: 1.000000E-03 + Initial trust radius: 1.500000E-01 + GDIIS used if gradient norm < 1.000000E-02 + Number of previous steps for GDIIS: 5 + Hessian update method: BFGS + *** Convergence criteria *** + Threshold for energy change: 1.000000E-06 + Threshold for max displacement element: 1.000000E-03 + Threshold for max gradient element : 1.000000E-03 + Threshold for RMS of displacement: 5.000000E-04 + Threshold for RMS of gradient: 5.000000E-04 + ************************************************************ + + + Keyword $statp missing in file + + Keyword $statpt not found - using default options + Number of symmetry restricted degrees of freedom: 1 + Constituted by: 0 translational degrees of freedom + 0 rotational degrees of freedom + 1 internal degrees of freedom + + ************************************************************************* + ATOM CARTESIAN COORDINATES + 1 n 0.00000000000000 0.00000000000000 0.00000000000000 + 2 o -1.17613204364309 2.03712045599966 0.00000000000000 + 3 o -1.17613204364309 -2.03712045599966 0.00000000000000 + 4 o 2.35226408728620 0.00000000000000 0.00000000000000 + ************************************************************************* + ATOM CARTESIAN GRADIENTS + 1 n 0.00000000000000 0.00000000000000 0.00000000000000 + 2 o 0.00000602671394 -0.00001043857474 0.00000000000000 + 3 o 0.00000602671394 0.00001043857474 0.00000000000000 + 4 o -0.00001205342787 0.00000000000000 0.00000000000000 + ************************************************************************* + + norm of actual CARTESIAN gradient: 2.08771E-05 + norm of actual INTERNAL gradient: 2.08771E-05 + + ENERGY = -280.0694049683 a.u.; # of cycle = 4 + + Approximate Hessian read from $hessapprox data section + + Hessian updated according to BFGS formula + Number of zero Hessian eigenvalues: 0 + FIRST criterion done: 556150425090670. 1 + Number of structures for GDIIS interpolation: 1 + GDIIS step: 0.000028 + + Transforming internal coordinate displacements to Cartesian space + Iteration 1 residual norm 2.838018E-05 + Iteration 2 residual norm 8.881784E-16 + Transformation converged + Residual norm: 8.881784E-16 after 2 iterations + + ****************************************************************** + CONVERGENCE INFORMATION + + Converged? Value Criterion + Energy change yes 0.0000005 0.0000010 + RMS of displacement yes 0.0000284 0.0005000 + RMS of gradient yes 0.0000209 0.0005000 + MAX displacement yes 0.0000284 0.0010000 + MAX gradient yes 0.0000209 0.0010000 + ****************************************************************** + + + ------------------------------------------------------------------------ + total cpu-time : 0.05 seconds + total wall-time : 0.41 seconds + ------------------------------------------------------------------------ + + **** statpt : all done **** + + + 2023-01-25 00:19:38.390 + +fine, there is no data group "$actual step" +next step = ridft + + WARNING : length of argument string +/projects/matgenix/COMMON/software/TURBOMOLE/evaluation_license/TURBOMOLE_76/bin/em64t-unknown-linux-gnu + exceeds 80 characters + argument will be ignored! + + + ridft (frontal3) : TURBOMOLE rev. V7-6 19 Oct 2021 at 10:10:11 compiled Oct 19th 2021 + Copyright (C) 2021 TURBOMOLE GmbH, Karlsruhe + + + 2023-01-25 00:19:38.573 + + + + r i d f t + + DFT program with RI approximation + for coulomb part + + + + + + References: + + TURBOMOLE: + R. Ahlrichs, M. Baer, M. Haeser, H. Horn, and + C. Koelmel + Electronic structure calculations on workstation + computers: the program system TURBOMOLE + Chem. Phys. Lett. 162: 165 (1989) + Density Functional: + O. Treutler and R. Ahlrichs + Efficient Molecular Numerical Integration Schemes + J. Chem. Phys. 102: 346 (1995) + Parallel Version: + Performance of parallel TURBOMOLE for Density + Functional Calculations + M. v. Arnim and R. Ahlrichs + J. Comp. Chem. 19: 1746 (1998) + RI-J Method: + Auxiliary Basis Sets to approximate Coulomb + Potentials + Chem. Phys. Lett. 240: 283 (1995) + K. Eichkorn, O. Treutler, H. Oehm, M. Haeser + and R. Ahlrichs + Chem. Phys. Lett. 242: 652 (1995) + + Auxiliary Basis Sets for Main Row Atoms and their + Use to approximate Coulomb Potentials + K. Eichkorn, F. Weigend, O. Treutler and + R. Ahlrichs + Theo. Chem. Acc. 97: 119 (1997) + + Accurate Coulomb-fitting basis sets for H to Rn + F. Weigend + Phys. Chem. Chem. Phys. 8: 1057 (2006) + + Multipole accelerated RI-J (MARI-J): + Fast evaluation of the Coulomb potential for + electron densities using multipole accelerated + resolution of identity approximation + M. Sierka, A. Hogekamp and R. Ahlrichs + J. Chem. Phys. 118: 9136 (2003) + RI-JK Method: + A fully direct RI-HF algorithm: Implementation, + optimised auxiliary basis sets, demonstration of + accuracy and efficiency + F. Weigend + Phys. Chem. Chem. Phys. 4: 4285 (2002) + Two-component HF and DFT with spin-orbit coupling: + Self-consistent treatment of spin-orbit + interactions with efficient Hartree-Fock and + density functional methods + M. K. Armbruster, F. Weigend, C. van Wüllen and + W. Klopper + Phys. Chem. Chem. Phys. 10: 1748 (2008) + Two-component difference density and DIIS algorithm + Efficient two-component self-consistent field + procedures and gradients: implementation in + TURBOMOLE and application to Au20- + A. Baldes, F. Weigend + Mol. Phys. 111: 2617 (2013) + Relativistic all-electron 2c calculations + An efficient implementation of two-component + relativistic exact-decoupling methods for large + molecules + D. Peng, N. Middendorf, F. Weigend, M. Reiher + J. Chem. Phys. 138: 184105 (2013) + Finite nucleus model and SNSO approximation + Efficient implementation of one- and two- + component analytical energy gradients in exact + two-component theory + Y. J. Franzke, N. Middendorf, F. Weigend + J. Chem. Phys. 148: 104110 (2018) + Grids for all-electron relativistic methods + Error-consistent segmented contracted all- + electron relativistic basis sets of double- + and triple-zeta quality for NMR shielding + constants + Y. J. Franzke, R. Tress, T. M. Pazdera, + F. Weigend + Phys. Chem. Chem. Phys. 21: 166658 (2019) + Seminumerical exchange algorithms + Seminumerical calculation of the Hartree-Fock + exchange matirx: Application to two-component + procedures and efficient evaluation of local + hybrid functionsl + P. Plessow, F. Weigend, + J. Comput. Chem. 33: 810 (2012) + Improved seminumerical algorithms + C. Holzer, + J. Chem. Phys. 153 (2020), 184115 + + + + + + +--------------------------------------------------+ + | general information about current run | + +--------------------------------------------------+ + + + B-P86 functional + exchange: LDA + Becke (B88) + correlation: LDA (VWN) + Perdew (P86) + A DFT calculation using the RI-J approximation will be carried out. + Allocatable memory for RI due to $ricore (MB): 500 + + ************************************************************************* + ridft + ************************************************************************* + + + + + +--------------------------------------------------+ + | Atomic coordinate, charge and isotop information | + +--------------------------------------------------+ + + atomic coordinates atom charge isotop + 0.00000000 0.00000000 0.00000000 n 7.000 0 + -1.17614024 2.03713465 0.00000000 o 8.000 0 + -1.17614024 -2.03713465 0.00000000 o 8.000 0 + 2.35228047 0.00000000 0.00000000 o 8.000 0 + + center of nuclear mass : 0.00000000 0.00000000 0.00000000 + center of nuclear charge: 0.00000000 0.00000000 0.00000000 + + +--------------------------------------------------+ + | basis set information | + +--------------------------------------------------+ + + we will work with the 1s 3p 5d 7f 9g ... basis set + ...i.e. with spherical basis functions... + + type atoms prim cont basis + --------------------------------------------------------------------------- + n 1 24 14 def-SV(P) [3s2p1d|7s4p1d] + o 3 24 14 def-SV(P) [3s2p1d|7s4p1d] + --------------------------------------------------------------------------- + total: 4 96 56 + --------------------------------------------------------------------------- + + total number of primitive shells : 24 + total number of contracted shells : 24 + total number of cartesian basis functions : 60 + total number of SCF-basis functions : 56 + + + integral neglect threshold : 0.56E-10 + integral storage threshold THIZE : 0.10E-04 + integral storage threshold THIME : 5 + + RI-J AUXILIARY BASIS SET information: + + we will work with the 1s 3p 5d 7f 9g ... basis set + ...i.e. with spherical basis functions... + + type atoms prim cont basis + --------------------------------------------------------------------------- + n 1 39 37 def-SV(P) [6s3p3d1f|8s3p3d1f] + o 3 39 37 def-SV(P) [6s3p3d1f|8s3p3d1f] + --------------------------------------------------------------------------- + total: 4 156 148 + --------------------------------------------------------------------------- + + total number of primitive shells : 30 + total number of contracted shells : 52 + total number of cartesian basis functions : 172 + total number of SCF-basis functions : 148 + + + symmetry group of the molecule : d3h + + the group has the following generators : + c3(z) + c2(x) + mirror plane sigma(xy) + + 12 symmetry operations found + + there are 6 real representations : a1' a2' e' a1" a2" e" + + maximum number of shells which are related by symmetry : 3 + + + ------------------ + density functional + ------------------ + B-P86 functional + exchange: LDA + Becke (B88) + correlation: LDA (VWN) + Perdew (P86) + + iterations will be done with small grid + + spherical integration : Lebedev's spherical grid + spherical gridsize : 3 + i.e. gridpoints : 302 + value for diffuse not defined + radial integration : Chebyshev 2nd kind (scaling 3) + radial gridsize : 3 + integration cells : 2 + partition function : becke + partition sharpness : 3 + + grid rotated due to d3 symmetry + + biggest AO integral is expected to be 4.776656448 + + ------------------------ + nuclear repulsion energy : 118.545069320 + ------------------------ + + + ----------------- + -S,T+V- integrals + ----------------- + + 1e-integrals will be neglected if expon. factor < 0.556994E-11 + + Difference densities algorithm switched on. + The maximal number of linear combinations of + difference densities is 20 . + + DIIS switched on: error vector is FDS-SDF + Max. Iterations for DIIS is : 4 + DIIS matrix (see manual) + Scaling factor of diagonals : 1.200 + threshold for scaling factor : 0.000 + + scf convergence criterion : increment of total energy < .1000000D-06 + and increment of one-electron energy < .1000000D-03 + + MOs are in ASCII format ! + + + mo occupation : + irrep mo's occupied + a1' 11 4 + a2' 3 1 + e' 13 4 + a1" 1 0 + a2" 5 1 + e" 5 1 + + number of basis functions : 56 + number of occupied orbitals : 16 + + + reading orbital data $uhfmo_alpha from file alpha + orbital characterization : scfconv=7 + + reading orbital data $uhfmo_beta from file beta + orbital characterization : scfconv=7 + mo-orthogonalization by Cholesky decomposition + mo-orthogonalization by Cholesky decomposition + + UHF mode switched on ! + + closed shell shift switched on + all occupied orbitals are shifted by 0.05000 + + + ------------------------ + RI-J - INFORMATION + ------------------------ + Contributions to RI integral batches: + neglected integral batches: 202 + direct contribution: 0 + memory contribution: 98 + Memory core needed for (P|Q) and Cholesky 1 MByte + Memory core minimum needed except of (P|Q) 1 MByte + Total minimum memory core needed (sum) 1 MByte + + **************************************** + Memory allocated for RI-J 1 MByte + **************************************** + + + DSCF restart information will be dumped onto file alpha + + + Starting SCF iterations + + Overall gridpoints after grid construction = 1250 + + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 1 -280.06984303996 -617.90824351 219.29333115 0.000D+00 0.556D-10 + Exc = -32.5131717373 Coul = 251.806502884 + Ntotal = 31.000398797 Nspin = 1.0002688903 + Na = 16.000333844 Nb = 15.000064953 + current damping = 1.000 + + max. resid. norm for Fia-block= 5.672D-05 for orbital 2e' alpha + max. resid. fock norm = 1.930D-04 for orbital 12e' beta + + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 2 -280.06984305840 -617.90787426 219.29296188 0.173D-03 0.352D-10 + Exc = -32.5131809306 Coul = 251.806142811 + Ntotal = 31.000398812 Nspin = 1.0002688863 + Na = 16.000333849 Nb = 15.000064963 + current damping = 1.000 + + Norm of current diis error: 0.10833E-03 + max. resid. norm for Fia-block= 3.826D-05 for orbital 4a1' beta + max. resid. fock norm = 1.059D-04 for orbital 12e' alpha + + ENERGY CONVERGED ! + + Overall gridpoints after grid construction = 4268 + + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 3 -280.06940501689 -617.90795125 219.29347691 0.914D-04 0.289D-10 + Exc = -32.5127342046 Coul = 251.806211118 + Ntotal = 31.000014648 Nspin = 1.0000041953 + Na = 16.000009422 Nb = 15.000005227 + current damping = 1.050 + + Norm of current diis error: 0.60264E-04 + max. resid. norm for Fia-block= 1.586D-05 for orbital 4a1' beta + max. resid. fock norm = 5.063D-05 for orbital 12e' beta + + End of SCF iterations + + convergence criteria satisfied after 3 iterations + + + ************************************************************************* + ridft + ************************************************************************* + + + ------------------------------------------ + | total energy = -280.06940501689 | + ------------------------------------------ + : kinetic energy = 278.36285048323 : + : potential energy = -558.43225550011 : + : virial theorem = 1.99390667276 : + : wavefunction norm = 1.00000000000 : + .......................................... + + + orbitals $uhfmo_beta will be written to file beta + + orbitals $uhfmo_alpha will be written to file alpha + + alpha: + + irrep 1a1' 2a1' 3a1' 4a1' 5a1' + eigenvalues H -18.89130 -14.32201 -1.23417 -0.60119 0.08581 + eV -514.0625 -389.7248 -33.5837 -16.3593 2.3351 + occupation 1.0000 1.0000 1.0000 1.0000 + + irrep 6a1' 7a1' 8a1' 9a1' 10a1' + eigenvalues H 0.40775 0.79829 0.98694 2.16981 2.55739 + eV 11.0957 21.7227 26.8562 59.0439 69.5906 + + irrep 1a2' 2a2' 3a2' + eigenvalues H -0.30962 0.97911 2.45429 + eV -8.4252 26.6431 66.7852 + occupation 1.0000 + + irrep 1e' 2e' 3e' 4e' 5e' + eigenvalues H -18.89143 -1.02924 -0.53711 -0.37320 0.22702 + eV -514.0661 -28.0073 -14.6156 -10.1554 6.1776 + occupation 2 * 1.0000 2 * 1.0000 2 * 1.0000 2 * 1.0000 + + irrep 6e' 7e' 8e' 9e' 10e' + eigenvalues H 0.64300 0.78616 0.90085 1.29850 2.13133 + eV 17.4971 21.3926 24.5135 35.3344 57.9969 + + irrep 1a1" + eigenvalues H 2.43013 + eV 66.1277 + + irrep 1a2" 2a2" 3a2" 4a2" 5a2" + eigenvalues H -0.56763 -0.13285 0.59858 0.94053 2.70125 + eV -15.4462 -3.6151 16.2884 25.5933 73.5054 + occupation 1.0000 + + irrep 1e" 2e" 3e" 4e" 5e" + eigenvalues H -0.33985 0.84824 1.62543 2.42681 3.06258 + eV -9.2479 23.0818 44.2307 66.0373 83.3378 + occupation 2 * 1.0000 + + beta: + + irrep 1a1' 2a1' 3a1' 4a1' 5a1' + eigenvalues H -18.88259 -14.32291 -1.22640 -0.58767 0.09457 + eV -513.8255 -389.7494 -33.3722 -15.9914 2.5735 + occupation 1.0000 1.0000 1.0000 1.0000 + + irrep 6a1' 7a1' 8a1' 9a1' 10a1' + eigenvalues H 0.40801 0.80470 0.99558 2.17004 2.58644 + eV 11.1026 21.8972 27.0912 59.0502 70.3812 + + irrep 1a2' 2a2' 3a2' + eigenvalues H -0.26308 1.00891 2.48198 + eV -7.1589 27.4540 67.5386 + + irrep 1e' 2e' 3e' 4e' 5e' + eigenvalues H -18.88272 -1.01477 -0.52368 -0.33832 0.23627 + eV -513.8290 -27.6136 -14.2502 -9.2063 6.4293 + occupation 2 * 1.0000 2 * 1.0000 2 * 1.0000 2 * 1.0000 + + irrep 6e' 7e' 8e' 9e' 10e' + eigenvalues H 0.65406 0.80067 0.91548 1.30887 2.14245 + eV 17.7981 21.7876 24.9117 35.6164 58.2996 + + irrep 1a1" + eigenvalues H 2.45830 + eV 66.8943 + + irrep 1a2" 2a2" 3a2" 4a2" 5a2" + eigenvalues H -0.56596 -0.12800 0.59871 0.94489 2.70579 + eV -15.4006 -3.4832 16.2918 25.7120 73.6289 + occupation 1.0000 + + irrep 1e" 2e" 3e" 4e" 5e" + eigenvalues H -0.33056 0.85430 1.62532 2.45334 3.06627 + eV -8.9952 23.2468 44.2276 66.7593 83.4380 + occupation 2 * 1.0000 + + + _ _ _ + IRREP alpha occ. beta occ. tr(D*D-D) + + + a1' 4.00000000 4.00000000 -0.00006509 + + + a2' 1.00000000 0.00000000 -0.25000000 + + + e' 8.00000000 8.00000000 -0.00081290 + + + a1" 0.00000000 0.00000000 0.00000000 + + + a2" 1.00000000 1.00000000 -0.00010196 + + + e" 2.00000000 2.00000000 -0.00001458 + + ------------------------------------------------- + + sum 16.00000000 15.00000000 -0.25099452 + + 0.75198905 + + + + + ============================================================================== + electrostatic moments + ============================================================================== + + reference point for electrostatic moments: 0.00000 0.00000 0.00000 + + + nuc elec -> total + ------------------------------------------------------------------------------ + charge + ------------------------------------------------------------------------------ + 31.000000 -31.000000 0.000000 + a-b 1.000000 + + ------------------------------------------------------------------------------ + dipole moment + ------------------------------------------------------------------------------ + x 0.000000 -0.000000 -0.000000 + y 0.000000 -0.000000 -0.000000 + z 0.000000 0.000000 0.000000 + + | dipole moment | = 0.0000 a.u. = 0.0000 debye + + ------------------------------------------------------------------------------ + quadrupole moment + ------------------------------------------------------------------------------ + xx 66.398681 -82.994314 -16.595633 + yy 66.398681 -82.994314 -16.595633 + zz 0.000000 -14.606201 -14.606201 + xy 0.000000 0.000000 0.000000 + xz 0.000000 0.000000 0.000000 + yz 0.000000 0.000000 0.000000 + + 1/3 trace= -15.932489 + anisotropy= 1.989431 + + ============================================================================== + +HOMO-LUMO Separation + HOMO : -0.30961770 H = -8.42513 eV + LUMO : -0.26308348 H = -7.15887 eV + HOMO-LUMO gap: 0.04653421 H = +1.26626 eV + + ============================================================================== + + + ------------------------------------------------------------------------ + total cpu-time : 0.16 seconds + total wall-time : 1.02 seconds + ------------------------------------------------------------------------ + + **** ridft : all done **** + + + 2023-01-25 00:19:39.517 + +fine, there is no data group "$actual step" +next step = rdgrad + energy change : actual value = -0.4721E-06 threshold = 0.1000E-05 + geom. gradient : actual value = 0.2088E-04 threshold = 0.1000E-02 + +CONVERGENCY CRITERIA FULFILLED IN CYCLE 4 + diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/jobex/no3_ridft/ref_output.json b/turbomoleio/testfiles/outputs/TM_v7.6/jobex/no3_ridft/ref_output.json new file mode 100644 index 0000000..60de343 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/jobex/no3_ridft/ref_output.json @@ -0,0 +1,432 @@ +{ + "@module": "turbomoleio.output.files", + "@class": "JobexOutput", + "@version": "1.3.0", + "energy": { + "@module": "turbomoleio.output.files", + "@class": "ScfOutput", + "@version": "1.3.0", + "dft": { + "@module": "turbomoleio.output.data", + "@class": "DFTData", + "@version": "1.3.0", + "functional": { + "@module": "turbomoleio.output.data", + "@class": "FunctionalData", + "@version": "1.3.0", + "msg": "B-P86 functional\n exchange: LDA + Becke (B88)\n correlation: LDA (VWN) + Perdew (P86)", + "name": "b-p", + "func_type": "GGA", + "xcfun": null + }, + "ri": { + "@module": "turbomoleio.output.data", + "@class": "RiData", + "@version": "1.3.0", + "ricore": 500, + "marij": false, + "rij_memory": 1, + "rik": false + }, + "spherical_gridsize": 3, + "gridpoints": 302, + "dispersion_correction": null + }, + "scf": { + "@module": "turbomoleio.output.data", + "@class": "ScfData", + "@version": "1.3.0", + "iterations": { + "@module": "turbomoleio.output.data", + "@class": "ScfIterationData", + "@version": "1.3.0", + "energies": [ + -280.06984303996, + -280.0698430584, + -280.06940501689 + ], + "first_index": 1, + "n_steps": 3, + "dampings": [ + 1.0, + 1.0, + 1.05 + ], + "converged": true + }, + "diis": true, + "diis_error_vect": "FDS-SDF", + "conv_tot_en": 1e-07, + "conv_one_e_en": 0.0001, + "virtual_orbital_shift_on": false, + "virtual_orbital_shift_limit": null, + "orbital_characterization": "scfconv=7", + "restart_file": "alpha", + "n_occupied_orbitals": 16 + }, + "energies": { + "@module": "turbomoleio.output.data", + "@class": "ScfEnergiesData", + "@version": "1.3.0", + "total_energy": -280.06940501689, + "kinetic_energy": 278.36285048323, + "potential_energy": -558.43225550011, + "virial_theorem": 1.99390667276, + "wavefunction_norm": 1.0, + "coulomb_energy": null, + "xc_energy": null, + "ts_energy": null, + "free_energy": null, + "sigma0_energy": null + }, + "electrostatic": { + "@module": "turbomoleio.output.data", + "@class": "ElectrostaticMomentsData", + "@version": "1.3.0", + "charge": 0.0, + "unrestricted_electrons": 1.0, + "dipole_vector": [ + -0.0, + -0.0, + 0.0 + ], + "dipole_norm": 0.0, + "quadrupole_tensor": [ + [ + -16.595633, + 0.0, + 0.0 + ], + [ + 0.0, + -16.595633, + 0.0 + ], + [ + 0.0, + 0.0, + -14.606201 + ] + ], + "quadrupole_trace": -47.797467, + "quadrupole_anisotropy": 1.989431 + }, + "geometry": { + "@module": "turbomoleio.output.data", + "@class": "GeometryData", + "@version": "1.3.0", + "center_of_mass": [ + 0.0, + 0.0, + 0.0 + ], + "center_of_charge": [ + 0.0, + 0.0, + 0.0 + ], + "molecule": { + "@module": "pymatgen.core.structure", + "@class": "Molecule", + "charge": 0.0, + "spin_multiplicity": 2, + "sites": [ + { + "name": "N", + "species": [ + { + "element": "N", + "occu": 1 + } + ], + "xyz": [ + 0.0, + 0.0, + 0.0 + ], + "properties": {} + }, + { + "name": "O", + "species": [ + { + "element": "O", + "occu": 1 + } + ], + "xyz": [ + -0.622386611833985, + 1.078005232320859, + 0.0 + ], + "properties": {} + }, + { + "name": "O", + "species": [ + { + "element": "O", + "occu": 1 + } + ], + "xyz": [ + -0.622386611833985, + -1.078005232320859, + 0.0 + ], + "properties": {} + }, + { + "name": "O", + "species": [ + { + "element": "O", + "occu": 1 + } + ], + "xyz": [ + 1.244773218376198, + 0.0, + 0.0 + ], + "properties": {} + } + ] + } + }, + "basis": { + "@module": "turbomoleio.output.data", + "@class": "BasisData", + "@version": "1.3.0", + "basis_per_specie": { + "n": "def-SV(P)", + "o": "def-SV(P)" + }, + "aux_basis_per_specie": { + "n": "def-SV(P)", + "o": "def-SV(P)" + }, + "number_scf_basis_func": 56, + "number_scf_aux_basis_func": 148 + }, + "run": { + "@module": "turbomoleio.output.data", + "@class": "RunData", + "@version": "1.3.0", + "host": "frontal3", + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:19:38.573000" + }, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:19:39.517000" + }, + "cpu_time": 0.16, + "wall_time": 1.02 + }, + "tm": { + "@module": "turbomoleio.output.data", + "@class": "TurbomoleData", + "@version": "1.3.0", + "version": "7.6", + "build": null, + "executable": "ridft" + }, + "cosmo": null, + "spin": { + "@module": "turbomoleio.output.data", + "@class": "SpinData", + "@version": "1.3.0", + "unrestricted": true, + "s2": { + "s2": 0.75198905 + } + }, + "integral": { + "@module": "turbomoleio.output.data", + "@class": "IntegralData", + "@version": "1.3.0", + "integral_neglect_threshold": 5.6e-11, + "thize": 1e-05, + "thime": 5 + }, + "smearing": null, + "symmetry": { + "@module": "turbomoleio.output.data", + "@class": "SymmetryData", + "@version": "1.3.0", + "symbol": "d3h", + "n_reps": 6, + "reps": [ + "a1'", + "a2'", + "e'", + "a1\"", + "a2\"", + "e\"" + ] + }, + "periodicity": null + }, + "gradient": { + "@module": "turbomoleio.output.files", + "@class": "GradOutput", + "@version": "1.3.0", + "gradients": [ + [ + 0.0, + 0.0, + 0.0 + ], + [ + 6.026714e-06, + -1.043857e-05, + 0.0 + ], + [ + 6.026714e-06, + 1.043857e-05, + 0.0 + ], + [ + -1.205343e-05, + 0.0, + 0.0 + ] + ], + "dielectric": [ + [ + -4.3e-05, + 0.0, + 0.0 + ], + [ + 0.0, + -4.3e-05, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ] + ], + "run": { + "@module": "turbomoleio.output.data", + "@class": "RunData", + "@version": "1.3.0", + "host": "frontal3", + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:19:37.564000" + }, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:19:37.838000" + }, + "cpu_time": 0.11, + "wall_time": 0.33 + }, + "tm": { + "@module": "turbomoleio.output.data", + "@class": "TurbomoleData", + "@version": "1.3.0", + "version": "7.6", + "build": null, + "executable": "rdgrad" + }, + "memory": 1 + }, + "relax": { + "@module": "turbomoleio.output.files", + "@class": "StatptOutput", + "@version": "1.3.0", + "info": { + "@module": "turbomoleio.output.data", + "@class": "StatptData", + "@version": "1.3.0", + "max_trust_radius": 0.3, + "min_trust_radius": 0.001, + "init_trust_radius": 0.15, + "min_grad_norm_for_gdiis": 0.01, + "prev_steps_for_gdiis": 5, + "hessian_update_method": "BFGS", + "thr_energy_change": 1e-06, + "thr_max_displ": 0.001, + "thr_max_grad": 0.001, + "thr_rms_displ": 0.0005, + "thr_rms_grad": 0.0005, + "use_defaults": true, + "final_step_radius": null + }, + "gradients": { + "@module": "turbomoleio.output.data", + "@class": "RelaxGradientsData", + "@version": "1.3.0", + "norm_cartesian": 2.08771e-05, + "norm_internal": 2.08771e-05, + "max_internal": null + }, + "convergence": { + "@module": "turbomoleio.output.data", + "@class": "RelaxConvergenceData", + "@version": "1.3.0", + "energy_change": { + "value": 5e-07, + "thr": 1e-06, + "conv": true + }, + "rms_displ": { + "value": 2.84e-05, + "thr": 0.0005, + "conv": true + }, + "max_displ": { + "value": 2.84e-05, + "thr": 0.001, + "conv": true + }, + "rms_grad": { + "value": 2.09e-05, + "thr": 0.0005, + "conv": true + }, + "max_grad": { + "value": 2.09e-05, + "thr": 0.001, + "conv": true + } + }, + "run": { + "@module": "turbomoleio.output.data", + "@class": "RunData", + "@version": "1.3.0", + "host": "frontal3", + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:19:38.051000" + }, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:19:38.390000" + }, + "cpu_time": 0.05, + "wall_time": 0.41 + }, + "tm": { + "@module": "turbomoleio.output.data", + "@class": "TurbomoleData", + "@version": "1.3.0", + "version": "7.6", + "build": null, + "executable": "statpt" + } + } +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/jobex/no3_ridft/ref_parser.json b/turbomoleio/testfiles/outputs/TM_v7.6/jobex/no3_ridft/ref_parser.json new file mode 100644 index 0000000..d551537 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/jobex/no3_ridft/ref_parser.json @@ -0,0 +1,296 @@ +{ + "all_done": true, + "header": { + "executable": "rdgrad", + "host": "frontal3", + "tm_version": "7.6", + "tm_build": null, + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:19:37.564000" + } + }, + "centers": { + "center_of_mass": [ + 0.0, + 0.0, + 0.0 + ], + "center_of_charge": [ + 0.0, + 0.0, + 0.0 + ] + }, + "coordinates": { + "coords": [ + [ + 0.0, + 0.0, + 0.0 + ], + [ + -1.17613204, + 2.03712046, + 0.0 + ], + [ + -1.17613204, + -2.03712046, + 0.0 + ], + [ + 2.35226409, + 0.0, + 0.0 + ] + ], + "species": [ + "n", + "o", + "o", + "o" + ], + "charges": [ + 7.0, + 8.0, + 8.0, + 8.0 + ], + "isotopes": [ + 0, + 0, + 0, + 0 + ] + }, + "basis": { + "basis_per_specie": { + "n": "def-SV(P)", + "o": "def-SV(P)" + }, + "aux_basis_per_specie": { + "n": "def-SV(P)", + "o": "def-SV(P)" + }, + "number_scf_basis_func": 56, + "number_scf_aux_basis_func": 148 + }, + "symmetry": { + "symbol": "d3h", + "n_reps": 6, + "reps": [ + "a1'", + "a2'", + "e'", + "a1\"", + "a2\"", + "e\"" + ] + }, + "cosmo_header": null, + "density_functional_data": { + "functional_msg": "B-P86 functional\n exchange: LDA + Becke (B88)\n correlation: LDA (VWN) + Perdew (P86)", + "functional_name": "b-p", + "functional_type": "GGA", + "xcfun": null, + "spherical_gridsize": 3, + "gridpoints": 302 + }, + "rij_info": { + "marij": false, + "rij_memory": 1, + "rik": false, + "ricore": 500 + }, + "dftd": null, + "pre_scf_run": { + "diis": true, + "diis_error_vect": "FDS-SDF", + "conv_tot_en": 1e-07, + "conv_one_e_en": 0.0001, + "virtual_orbital_shift_on": false, + "virtual_orbital_shift_limit": null, + "orbital_characterization": "scfconv=7", + "restart_file": "alpha", + "n_occupied_orbitals": 16 + }, + "scf_iterations": { + "energies": [ + -280.06984303996, + -280.0698430584, + -280.06940501689 + ], + "first_index": 1, + "n_steps": 3, + "dampings": [ + 1.0, + 1.0, + 1.05 + ], + "converged": true + }, + "scf_energies": { + "total_energy": -280.06940501689, + "kinetic_energy": 278.36285048323, + "potential_energy": -558.43225550011, + "virial_theorem": 1.99390667276, + "wavefunction_norm": 1.0 + }, + "cosmo_results": null, + "electrostatic_moments": { + "unrestricted_electrons": 1.0, + "charge": 0.0, + "dipole": { + "norm": 0.0, + "moment": [ + -0.0, + -0.0, + 0.0 + ] + }, + "quadrupole": { + "trace": -47.797467, + "anisotropy": 1.989431, + "moment": [ + [ + -16.595633, + 0.0, + 0.0 + ], + [ + 0.0, + -16.595633, + 0.0 + ], + [ + 0.0, + 0.0, + -14.606201 + ] + ] + } + }, + "timings": { + "cpu_time": 0.11, + "wall_time": 0.33, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:19:37.838000" + } + }, + "s2": { + "s2": 0.75198905 + }, + "is_uhf": true, + "fermi": null, + "integral": { + "integral_neglect_threshold": 5.6e-11, + "thize": 1e-05, + "thime": 5 + }, + "pre_escf_run": null, + "escf_iterations": null, + "escf_gs_total_en": null, + "escf_excitations": null, + "rdgrad_memory": 1, + "gradient": { + "gradients": [ + [ + 0.0, + 0.0, + 0.0 + ], + [ + 6.026714e-06, + -1.043857e-05, + 0.0 + ], + [ + 6.026714e-06, + 1.043857e-05, + 0.0 + ], + [ + -1.205343e-05, + 0.0, + 0.0 + ] + ], + "dielectric": [ + [ + -4.3e-05, + 0.0, + 0.0 + ], + [ + 0.0, + -4.3e-05, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ] + ] + }, + "egrad_excited_state": null, + "statpt_info": { + "max_trust_radius": 0.3, + "min_trust_radius": 0.001, + "init_trust_radius": 0.15, + "min_grad_norm_for_gdiis": 0.01, + "prev_steps_for_gdiis": 5, + "hessian_update_method": "BFGS", + "thr_energy_change": 1e-06, + "thr_max_displ": 0.001, + "thr_max_grad": 0.001, + "thr_rms_displ": 0.0005, + "thr_rms_grad": 0.0005, + "use_defaults": true, + "final_step_radius": null + }, + "relax_info": null, + "relax_gradient_values": { + "norm_cartesian": 2.08771e-05, + "norm_internal": 2.08771e-05, + "max_internal": null + }, + "relax_conv_info": { + "energy_change": { + "value": 5e-07, + "thr": 1e-06, + "conv": true + }, + "rms_displ": { + "value": 2.84e-05, + "thr": 0.0005, + "conv": true + }, + "rms_grad": { + "value": 2.09e-05, + "thr": 0.0005, + "conv": true + }, + "max_displ": { + "value": 2.84e-05, + "thr": 0.001, + "conv": true + }, + "max_grad": { + "value": 2.09e-05, + "thr": 0.001, + "conv": true + } + }, + "aoforce_numerical_integration": null, + "aoforce_analysis": null, + "mp2_results": { + "energy": null + }, + "riper_scf_energies": null, + "periodicity_data": null +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/mpgrad/h2o_std_mp2/mpgrad.log b/turbomoleio/testfiles/outputs/TM_v7.6/mpgrad/h2o_std_mp2/mpgrad.log new file mode 100644 index 0000000..388bfae --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/mpgrad/h2o_std_mp2/mpgrad.log @@ -0,0 +1,190 @@ + + mpgrad (frontal3) : TURBOMOLE rev. V7-6 19 Oct 2021 at 10:10:11 compiled Oct 19th 2021 + Copyright (C) 2021 TURBOMOLE GmbH, Karlsruhe + + + 2023-01-25 00:21:37.810 + + + + m p g r a d - program + + F.Haase & R.Ahlrichs (JCompChem 14(1993)907) + restructured and UMP2 added: M.Kollwitz (1995/6) + parallel version: G.Corongiu (1997) + symmetry: M.Haeser,J.Almloef,M.Feyereisen (TCA 79(1991)115) + energy: R.Ahlrichs,M.Baer,M.Haeser,H.Horn,C.Koelmel (CPL 162(1989)165) + + quantum chemistry group + university karlsruhe + germany + + + you specified 11 scratch files in the control file + + + +--------------------------------------------------+ + | Atomic coordinate, charge and isotop information | + +--------------------------------------------------+ + + atomic coordinates atom charge isotop + 0.00000000 0.00000000 -0.72557892 o 8.000 0 + 1.41713421 0.00000000 0.36278946 h 1.000 0 + -1.41713421 0.00000000 0.36278946 h 1.000 0 + + center of nuclear mass : 0.00000000 0.00000000 -0.60378908 + center of nuclear charge: 0.00000000 0.00000000 -0.50790525 + + +--------------------------------------------------+ + | basis set information | + +--------------------------------------------------+ + + we will work with the 1s 3p 5d 7f 9g ... basis set + ...i.e. with spherical basis functions... + + type atoms prim cont basis + --------------------------------------------------------------------------- + o 1 24 14 def-SV(P) [3s2p1d|7s4p1d] + h 2 4 2 def-SV(P) [2s|4s] + --------------------------------------------------------------------------- + total: 3 32 18 + --------------------------------------------------------------------------- + + total number of primitive shells : 16 + total number of contracted shells : 10 + total number of cartesian basis functions : 19 + total number of SCF-basis functions : 18 + + + MAXIMUM CORE MEMORY WHICH CAN BE ALLOCATED DYNAMICALLY = 500 Mbytes + ( or 65536000 double words ) + + + symmetry group of the molecule : c1 + + the group has the following generators : + c1(z) + + 1 symmetry operations found + + there are 1 real representations : a + + maximum number of shells which are related by symmetry : 1 + + + determining totally symmetric integral contributions + - equivalent to irreducible tensor elements - + which can be formed within each quadruple of representations : + + representation quadruple contributions + + 1 1 a a a a 1 + + + total number of totally symmetric contributions : 1 + total number of non-equal integral types : 1 + total number of non-zero integral types : 1 + t.number of mat.elements of symmetrizing projectors: 1 + total number of back-transformation matrix elements: 1 + + mo occupation : + irrep mo's occupied + a 18 5 + + number of basis functions : 18 + number of occupied orbitals : 5 + + MOs are in ASCII format ! + + + reading orbital data $scfmo from file mos + orbital characterization : scfconv=7 + time elapsed for calculating density matrices : 0.000 sec + + + freezing orbitals : + frozen occupied orbitals: + 1 a -20.540108 H + + number of non-frozen orbitals : 17 + number of non-frozen occupied orbitals : 4 + + biggest AO integral is expected to be 4.776656448 + sqrt of biggest ao-integral is expected to be 2.1855563 + + number of basis function pairs which contribute + to half-transformed integrals is expected to be : 189 + iloop= 1 + + MULTIPLE PASS Statistics + ---------------------------------------------------- + pass irrep lambda batch : MO to MO + ---------------------------------------------------- + 1 1 -> 1 1 -> 4 1 -> 4 + + + ************************************************************** + RESULTING NUMBER OF INTEGRAL AND DERIVATIVE EVALUATIONS 1 + ************************************************************** + + + ----------------------------------------------- + PASS : 1 + ----------------------------------------------- + + record length scale factor = 8 + + + actual number of basis function pairs which contr. + to half-transformed integrals is : 189 + + cpu for first half-transformation 0.05 s + + cpu for second half-transformation 0.00 s + + cpu for calculation of T2-amplitudes 0.00 s + + Largest euclidian normes of T2 (for fixed ij) + --------------------------------------------- + [ i j ] norm[ T2(ij) ] + --------------------------------------------- + 3 2 0.09012660497532 + 4 3 0.08813098175526 + 4 2 0.08729150163713 + 2 2 0.07119945957103 + 3 3 0.06548673106349 + + + Largest T2 amplitudes + --------------------------------------------- + [ i j a b ] T2(ij,ab) + --------------------------------------------- + 4 3 10 9 0.06127357411345 + 4 2 11 9 0.04899917953767 + 4 4 9 9 0.04716366216689 + 4 2 6 9 0.04302003570567 + 3 2 11 10 0.04300241961681 + + + ***************************************************** + * * + * SCF-energy : -75.93831931312000 * + * MP2-energy : -0.18709123810377 * + * total : -76.12541055122378 * + * * + * (MP2-energy evaluated from T2 amplitudes) * + * * + ***************************************************** + + + + ------------------------------------------------------------------------ + total cpu-time : 0.05 seconds + total wall-time : 0.48 seconds + ------------------------------------------------------------------------ + + **** mpgrad : all done **** + + + 2023-01-25 00:21:38.216 + diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/mpgrad/h2o_std_mp2/ref_output.json b/turbomoleio/testfiles/outputs/TM_v7.6/mpgrad/h2o_std_mp2/ref_output.json new file mode 100644 index 0000000..78ce612 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/mpgrad/h2o_std_mp2/ref_output.json @@ -0,0 +1,129 @@ +{ + "@module": "turbomoleio.output.files", + "@class": "MP2Output", + "@version": "1.3.0", + "info": null, + "results": { + "@module": "turbomoleio.output.data", + "@class": "MP2Results", + "@version": "1.3.0", + "energy": -76.12541055122378 + }, + "geometry": { + "@module": "turbomoleio.output.data", + "@class": "GeometryData", + "@version": "1.3.0", + "center_of_mass": [ + 0.0, + 0.0, + -0.60378908 + ], + "center_of_charge": [ + 0.0, + 0.0, + -0.50790525 + ], + "molecule": { + "@module": "pymatgen.core.structure", + "@class": "Molecule", + "charge": 0.0, + "spin_multiplicity": 1, + "sites": [ + { + "name": "O", + "species": [ + { + "element": "O", + "occu": 1 + } + ], + "xyz": [ + 0.0, + 0.0, + -0.38395982917561094 + ], + "properties": {} + }, + { + "name": "H", + "species": [ + { + "element": "H", + "occu": 1 + } + ], + "xyz": [ + 0.7499151287230262, + 0.0, + 0.19197991458780547 + ], + "properties": {} + }, + { + "name": "H", + "species": [ + { + "element": "H", + "occu": 1 + } + ], + "xyz": [ + -0.7499151287230262, + 0.0, + 0.19197991458780547 + ], + "properties": {} + } + ] + } + }, + "basis": { + "@module": "turbomoleio.output.data", + "@class": "BasisData", + "@version": "1.3.0", + "basis_per_specie": { + "o": "def-SV(P)", + "h": "def-SV(P)" + }, + "aux_basis_per_specie": {}, + "number_scf_basis_func": 18, + "number_scf_aux_basis_func": null + }, + "symmetry": { + "@module": "turbomoleio.output.data", + "@class": "SymmetryData", + "@version": "1.3.0", + "symbol": "c1", + "n_reps": 1, + "reps": [ + "a" + ] + }, + "cosmo": null, + "run": { + "@module": "turbomoleio.output.data", + "@class": "RunData", + "@version": "1.3.0", + "host": "frontal3", + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:21:37.810000" + }, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:21:38.216000" + }, + "cpu_time": 0.05, + "wall_time": 0.48 + }, + "tm": { + "@module": "turbomoleio.output.data", + "@class": "TurbomoleData", + "@version": "1.3.0", + "version": "7.6", + "build": null, + "executable": "mpgrad" + } +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/mpgrad/h2o_std_mp2/ref_parser.json b/turbomoleio/testfiles/outputs/TM_v7.6/mpgrad/h2o_std_mp2/ref_parser.json new file mode 100644 index 0000000..058dce5 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/mpgrad/h2o_std_mp2/ref_parser.json @@ -0,0 +1,116 @@ +{ + "all_done": true, + "header": { + "executable": "mpgrad", + "host": "frontal3", + "tm_version": "7.6", + "tm_build": null, + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:21:37.810000" + } + }, + "centers": { + "center_of_mass": [ + 0.0, + 0.0, + -0.60378908 + ], + "center_of_charge": [ + 0.0, + 0.0, + -0.50790525 + ] + }, + "coordinates": { + "coords": [ + [ + 0.0, + 0.0, + -0.72557892 + ], + [ + 1.41713421, + 0.0, + 0.36278946 + ], + [ + -1.41713421, + 0.0, + 0.36278946 + ] + ], + "species": [ + "o", + "h", + "h" + ], + "charges": [ + 8.0, + 1.0, + 1.0 + ], + "isotopes": [ + 0, + 0, + 0 + ] + }, + "basis": { + "basis_per_specie": { + "o": "def-SV(P)", + "h": "def-SV(P)" + }, + "aux_basis_per_specie": {}, + "number_scf_basis_func": 18, + "number_scf_aux_basis_func": null + }, + "symmetry": { + "symbol": "c1", + "n_reps": 1, + "reps": [ + "a" + ] + }, + "cosmo_header": null, + "density_functional_data": null, + "rij_info": null, + "dftd": null, + "pre_scf_run": null, + "scf_iterations": null, + "scf_energies": null, + "cosmo_results": null, + "electrostatic_moments": null, + "timings": { + "cpu_time": 0.05, + "wall_time": 0.48, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:21:38.216000" + } + }, + "s2": null, + "is_uhf": false, + "fermi": null, + "integral": null, + "pre_escf_run": null, + "escf_iterations": null, + "escf_gs_total_en": null, + "escf_excitations": null, + "rdgrad_memory": null, + "gradient": null, + "egrad_excited_state": null, + "statpt_info": null, + "relax_info": null, + "relax_gradient_values": null, + "relax_conv_info": null, + "aoforce_numerical_integration": null, + "aoforce_analysis": null, + "mp2_results": { + "energy": -76.12541055122378 + }, + "riper_scf_energies": null, + "periodicity_data": null +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/mpgrad/h2o_std_mp2_gradient/mpgrad.log b/turbomoleio/testfiles/outputs/TM_v7.6/mpgrad/h2o_std_mp2_gradient/mpgrad.log new file mode 100644 index 0000000..d8d2731 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/mpgrad/h2o_std_mp2_gradient/mpgrad.log @@ -0,0 +1,319 @@ + + mpgrad (frontal3) : TURBOMOLE rev. V7-6 19 Oct 2021 at 10:10:11 compiled Oct 19th 2021 + Copyright (C) 2021 TURBOMOLE GmbH, Karlsruhe + + + 2023-01-25 00:21:41.158 + + + + m p g r a d - program + + F.Haase & R.Ahlrichs (JCompChem 14(1993)907) + restructured and UMP2 added: M.Kollwitz (1995/6) + parallel version: G.Corongiu (1997) + symmetry: M.Haeser,J.Almloef,M.Feyereisen (TCA 79(1991)115) + energy: R.Ahlrichs,M.Baer,M.Haeser,H.Horn,C.Koelmel (CPL 162(1989)165) + + quantum chemistry group + university karlsruhe + germany + + + you specified 11 scratch files in the control file + + + +--------------------------------------------------+ + | Atomic coordinate, charge and isotop information | + +--------------------------------------------------+ + + atomic coordinates atom charge isotop + 0.00000000 0.00000000 -0.72557892 o 8.000 0 + 1.41713421 0.00000000 0.36278946 h 1.000 0 + -1.41713421 0.00000000 0.36278946 h 1.000 0 + + center of nuclear mass : 0.00000000 0.00000000 -0.60378908 + center of nuclear charge: 0.00000000 0.00000000 -0.50790525 + + +--------------------------------------------------+ + | basis set information | + +--------------------------------------------------+ + + we will work with the 1s 3p 5d 7f 9g ... basis set + ...i.e. with spherical basis functions... + + type atoms prim cont basis + --------------------------------------------------------------------------- + o 1 24 14 def-SV(P) [3s2p1d|7s4p1d] + h 2 4 2 def-SV(P) [2s|4s] + --------------------------------------------------------------------------- + total: 3 32 18 + --------------------------------------------------------------------------- + + total number of primitive shells : 16 + total number of contracted shells : 10 + total number of cartesian basis functions : 19 + total number of SCF-basis functions : 18 + + + MAXIMUM CORE MEMORY WHICH CAN BE ALLOCATED DYNAMICALLY = 500 Mbytes + ( or 65536000 double words ) + + + symmetry group of the molecule : c1 + + the group has the following generators : + c1(z) + + 1 symmetry operations found + + there are 1 real representations : a + + maximum number of shells which are related by symmetry : 1 + + + determining totally symmetric integral contributions + - equivalent to irreducible tensor elements - + which can be formed within each quadruple of representations : + + representation quadruple contributions + + 1 1 a a a a 1 + + + total number of totally symmetric contributions : 1 + total number of non-equal integral types : 1 + total number of non-zero integral types : 1 + t.number of mat.elements of symmetrizing projectors: 1 + total number of back-transformation matrix elements: 1 + + mo occupation : + irrep mo's occupied + a 18 5 + + number of basis functions : 18 + number of occupied orbitals : 5 + + MOs are in ASCII format ! + + + reading orbital data $scfmo from file mos + orbital characterization : scfconv=7 + time elapsed for calculating density matrices : 0.001 sec + + + number of non-frozen orbitals : 18 + number of non-frozen occupied orbitals : 5 + + setting up bound for integral derivative estimation + + increment for numerical differentiation : 0.00050000 + + biggest AO integral is expected to be 4.776656448 + biggest cartesian 1st derivative AO integral is expected to be 8.648821438 + sqrt of biggest ao-integral is expected to be 2.1855563 + + number of basis function pairs which contribute + to half-transformed integrals is expected to be : 190 + iloop= 1 + + MULTIPLE PASS Statistics + ---------------------------------------------------- + pass irrep lambda batch : MO to MO + ---------------------------------------------------- + 1 1 -> 1 1 -> 5 1 -> 5 + + + ************************************************************** + RESULTING NUMBER OF INTEGRAL AND DERIVATIVE EVALUATIONS 1 + ************************************************************** + + number of basis function pairs which contribute + to 1st half-transformation of T2 amplitudes : 211 + to 2nd half-transformation of T2 amplitudes : 139 + + + ----------------------------------------------- + PASS : 1 + ----------------------------------------------- + + record length scale factor = 8 + + + actual number of basis function pairs which contr. + to half-transformed integrals is : 190 + + cpu for first half-transformation 0.05 s + + cpu for second half-transformation 0.00 s + + cpu for calculation of T2-amplitudes 0.00 s + + cpu to increment the relaxed densities 0.00 s + + cpu to increment the L-Matrix (3-ext.) 0.00 s + + cpu to increment the L-Matrix (1-ext.) 0.00 s + + cpu for first T2 half transformation 0.00 s + + cpu to increment the 2e-gradient 0.02 s + + Largest euclidian normes of T2 (for fixed ij) + --------------------------------------------- + [ i j ] norm[ T2(ij) ] + --------------------------------------------- + 4 3 0.09012660497532 + 5 4 0.08813098175526 + 5 3 0.08729150163713 + 3 3 0.07119945957103 + 4 4 0.06548673106350 + + + Largest T2 amplitudes + --------------------------------------------- + [ i j a b ] T2(ij,ab) + --------------------------------------------- + 5 4 11 10 0.06127357411345 + 5 3 12 10 0.04899917953767 + 5 5 10 10 0.04716366216689 + 5 3 7 10 0.04302003570567 + 4 3 12 11 0.04300241961681 + + + ***************************************************** + * * + * SCF-energy : -75.93831931312000 * + * MP2-energy : -0.18921686470001 * + * total : -76.12753617782002 * + * * + * (MP2-energy evaluated from T2 amplitudes) * + * * + ***************************************************** + + +--------------------------------------------------------------------------- + trace of occupied-occupied block of relaxed density : -0.093132639570569 + trace of virtual-virtual block of relaxed density : 0.093132639570569 +--------------------------------------------------------------------------- + +------------------------------------------------------------ + cpu needed for calculation of 2e-fock term 0.01 sec. +------------------------------------------------------------ + + ------------------------------------------------- + -CPHF- contribution to MP2-Gradient via Z-vector + ------------------------------------------------- + + Requested convergence is 0.1000000000E-11 RMS + + iteration : 1 convergence : 0.3680251601E-03 + iteration : 2 convergence : 0.5179268925E-04 + iteration : 3 convergence : 0.4080742659E-06 + iteration : 4 convergence : 0.8917117486E-08 + iteration : 5 convergence : 0.4415621208E-09 + iteration : 6 convergence : 0.2218718277E-11 + iteration : 7 convergence : 0.1741531540E-13 + + *** the iterative expansion of z(ai) converged after 7 iterations *** +---------------------------------------------------------------------- + cpu needed for solving the linear equation for z-vector 0.02 sec. +---------------------------------------------------------------------- + +------------------------------------------------------------ + cpu needed for calculation of 2e-fock term 0.00 sec. +------------------------------------------------------------ + + 2e-integral 1st. derivatives will be neglected if expon. factor < 0.100000E-06 + outer boundary for 2e-integral derivative neglection is 0.100000E-06 + + + cpu to increment the 2e-gradient 0.02 s + + 1e-integral 1st. derivatives will be neglected if expon. factor < 0.100000E-10 + +--------------------------------------------------------------------------- + cpu needed for calculation of the 1-electron contributions 0.00 sec. +--------------------------------------------------------------------------- + + ------------------------------ + total gradient of MP2-energy + ------------------------------ + + ------------------------------------------------ + cartesian gradient of the energy (hartree/bohr) + ------------------------------------------------ + + ATOM 1 o 2 h 3 h +dE/dx 0.0000000D+00 -0.2101973D-01 0.2101973D-01 +dE/dy 0.2240877D-13 -0.1051689D-13 -0.1189188D-13 +dE/dz 0.2743353D-01 -0.1371676D-01 -0.1371676D-01 + + resulting FORCE (fx,fy,fz) = (-.755D-14,0.300D-28,-.216D-09) + resulting MOMENT (mx,my,mz) = (0.244D-13,-.172D-13,0.195D-14) + + + exx = -0.059576 eyy = 0.000000 ezz = -0.029858 + eyz = -0.000000 exz = 0.000000 exy = 0.000000 + + + ********************************************************************** + |maximum component of gradient| : 0.27433528E-01 (atom 1 o ) + gradient norm : 0.44861519E-01 + ********************************************************************** + + : data group $grad is missing + + *** cartesian gradients written onto *** + + + + ============================================================================== + electrostatic moments + ============================================================================== + + reference point for electrostatic moments: 0.00000 0.00000 0.00000 + + + nuc SCF,e -> SCF,tot MP2 -> total + ------------------------------------------------------------------------------ + charge + ------------------------------------------------------------------------------ + 10.000000 -10.000000 -0.000000 0.000000 -0.000000 + + ------------------------------------------------------------------------------ + dipole moment + ------------------------------------------------------------------------------ + x 0.000000 0.000000 0.000000 -0.000000 -0.000000 + y 0.000000 0.000000 0.000000 0.000000 0.000000 + z -5.079052 5.967495 0.888442 -0.006784 0.881658 + + | dipole moment | = 0.8817 a.u. = 2.2410 debye + + ------------------------------------------------------------------------------ + quadrupole moment + ------------------------------------------------------------------------------ + xx 4.016539 -7.161994 -3.145455 -0.064496 -3.209951 + yy 0.000000 -5.294693 -5.294693 -0.048481 -5.343175 + zz 4.474951 -9.858334 -5.383383 -0.042951 -5.426335 + xy 0.000000 -0.000000 -0.000000 0.000000 -0.000000 + xz 0.000000 -0.000000 -0.000000 -0.000000 -0.000000 + yz 0.000000 -0.000000 -0.000000 -0.000000 -0.000000 + + 1/3 trace= -4.659820 + anisotropy= 2.175996 + + ============================================================================== + + + + ------------------------------------------------------------------------ + total cpu-time : 0.15 seconds + total wall-time : 1.43 seconds + ------------------------------------------------------------------------ + + **** mpgrad : all done **** + + + 2023-01-25 00:21:42.534 + diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/mpgrad/h2o_std_mp2_gradient/ref_output.json b/turbomoleio/testfiles/outputs/TM_v7.6/mpgrad/h2o_std_mp2_gradient/ref_output.json new file mode 100644 index 0000000..4b57712 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/mpgrad/h2o_std_mp2_gradient/ref_output.json @@ -0,0 +1,129 @@ +{ + "@module": "turbomoleio.output.files", + "@class": "MP2Output", + "@version": "1.3.0", + "info": null, + "results": { + "@module": "turbomoleio.output.data", + "@class": "MP2Results", + "@version": "1.3.0", + "energy": -76.12753617782002 + }, + "geometry": { + "@module": "turbomoleio.output.data", + "@class": "GeometryData", + "@version": "1.3.0", + "center_of_mass": [ + 0.0, + 0.0, + -0.60378908 + ], + "center_of_charge": [ + 0.0, + 0.0, + -0.50790525 + ], + "molecule": { + "@module": "pymatgen.core.structure", + "@class": "Molecule", + "charge": 0.0, + "spin_multiplicity": 1, + "sites": [ + { + "name": "O", + "species": [ + { + "element": "O", + "occu": 1 + } + ], + "xyz": [ + 0.0, + 0.0, + -0.38395982917561094 + ], + "properties": {} + }, + { + "name": "H", + "species": [ + { + "element": "H", + "occu": 1 + } + ], + "xyz": [ + 0.7499151287230262, + 0.0, + 0.19197991458780547 + ], + "properties": {} + }, + { + "name": "H", + "species": [ + { + "element": "H", + "occu": 1 + } + ], + "xyz": [ + -0.7499151287230262, + 0.0, + 0.19197991458780547 + ], + "properties": {} + } + ] + } + }, + "basis": { + "@module": "turbomoleio.output.data", + "@class": "BasisData", + "@version": "1.3.0", + "basis_per_specie": { + "o": "def-SV(P)", + "h": "def-SV(P)" + }, + "aux_basis_per_specie": {}, + "number_scf_basis_func": 18, + "number_scf_aux_basis_func": null + }, + "symmetry": { + "@module": "turbomoleio.output.data", + "@class": "SymmetryData", + "@version": "1.3.0", + "symbol": "c1", + "n_reps": 1, + "reps": [ + "a" + ] + }, + "cosmo": null, + "run": { + "@module": "turbomoleio.output.data", + "@class": "RunData", + "@version": "1.3.0", + "host": "frontal3", + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:21:41.158000" + }, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:21:42.534000" + }, + "cpu_time": 0.15, + "wall_time": 1.43 + }, + "tm": { + "@module": "turbomoleio.output.data", + "@class": "TurbomoleData", + "@version": "1.3.0", + "version": "7.6", + "build": null, + "executable": "mpgrad" + } +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/mpgrad/h2o_std_mp2_gradient/ref_parser.json b/turbomoleio/testfiles/outputs/TM_v7.6/mpgrad/h2o_std_mp2_gradient/ref_parser.json new file mode 100644 index 0000000..05a285b --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/mpgrad/h2o_std_mp2_gradient/ref_parser.json @@ -0,0 +1,183 @@ +{ + "all_done": true, + "header": { + "executable": "mpgrad", + "host": "frontal3", + "tm_version": "7.6", + "tm_build": null, + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:21:41.158000" + } + }, + "centers": { + "center_of_mass": [ + 0.0, + 0.0, + -0.60378908 + ], + "center_of_charge": [ + 0.0, + 0.0, + -0.50790525 + ] + }, + "coordinates": { + "coords": [ + [ + 0.0, + 0.0, + -0.72557892 + ], + [ + 1.41713421, + 0.0, + 0.36278946 + ], + [ + -1.41713421, + 0.0, + 0.36278946 + ] + ], + "species": [ + "o", + "h", + "h" + ], + "charges": [ + 8.0, + 1.0, + 1.0 + ], + "isotopes": [ + 0, + 0, + 0 + ] + }, + "basis": { + "basis_per_specie": { + "o": "def-SV(P)", + "h": "def-SV(P)" + }, + "aux_basis_per_specie": {}, + "number_scf_basis_func": 18, + "number_scf_aux_basis_func": null + }, + "symmetry": { + "symbol": "c1", + "n_reps": 1, + "reps": [ + "a" + ] + }, + "cosmo_header": null, + "density_functional_data": null, + "rij_info": null, + "dftd": null, + "pre_scf_run": null, + "scf_iterations": null, + "scf_energies": null, + "cosmo_results": null, + "electrostatic_moments": { + "unrestricted_electrons": null, + "charge": -0.0, + "dipole": { + "norm": 0.8817, + "moment": [ + -0.0, + 0.0, + 0.881658 + ] + }, + "quadrupole": { + "trace": -13.97946, + "anisotropy": 2.175996, + "moment": [ + [ + -3.209951, + -0.0, + -0.0 + ], + [ + -0.0, + -5.343175, + -0.0 + ], + [ + -0.0, + -0.0, + -5.426335 + ] + ] + } + }, + "timings": { + "cpu_time": 0.15, + "wall_time": 1.43, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:21:42.534000" + } + }, + "s2": null, + "is_uhf": false, + "fermi": null, + "integral": null, + "pre_escf_run": null, + "escf_iterations": null, + "escf_gs_total_en": null, + "escf_excitations": null, + "rdgrad_memory": null, + "gradient": { + "gradients": [ + [ + 0.0, + 2.240877e-14, + 0.02743353 + ], + [ + -0.02101973, + -1.051689e-14, + -0.01371676 + ], + [ + 0.02101973, + -1.189188e-14, + -0.01371676 + ] + ], + "dielectric": [ + [ + -0.059576, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + -0.0 + ], + [ + 0.0, + -0.0, + -0.029858 + ] + ] + }, + "egrad_excited_state": null, + "statpt_info": null, + "relax_info": null, + "relax_gradient_values": null, + "relax_conv_info": null, + "aoforce_numerical_integration": null, + "aoforce_analysis": null, + "mp2_results": { + "energy": -76.12753617782002 + }, + "riper_scf_energies": null, + "periodicity_data": null +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/rdgrad/h2o_dftd3-bj/rdgrad.log b/turbomoleio/testfiles/outputs/TM_v7.6/rdgrad/h2o_dftd3-bj/rdgrad.log new file mode 100644 index 0000000..08daaa9 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/rdgrad/h2o_dftd3-bj/rdgrad.log @@ -0,0 +1,268 @@ + + rdgrad (frontal3) : TURBOMOLE rev. V7-6 19 Oct 2021 at 10:10:11 compiled Oct 19th 2021 + Copyright (C) 2021 TURBOMOLE GmbH, Karlsruhe + + + 2023-01-25 00:21:45.188 + + + + r d g r a d + + gradient for ridft program + + by K.Eichkorn, O.Treutler, H.Oehm, + M.Haeser and R.Ahlrichs + (Chemical Physics Letters 242 (1995) 652-660) + parallel version: M.v.Arnim & R.Ahlrichs + quantum chemistry group + university karlsruhe + germany + + + + + References + + Density Functional: + O. Treutler and R. Ahlrichs + Efficient Molecular Numerical Integration Schemes + J. Chem. Phys. 102: 346 (1995) + Parallel Version: + Performance of parallel TURBOMOLE for Density + Functional Calculations + M. v. Arnim and R. Ahlrichs + J. Comp. Chem. 19: 1746 (1998) + RI-J Method: + Auxiliary Basis Sets to approximate Coulomb + Potentials + Chem. Phys. Lett. 240: 283 (1995) + K. Eichkorn, O. Treutler, H. Oehm, M. Haeser + and R. Ahlrichs + Chem. Phys. Lett. 242: 652 (1995) + + Auxiliary Basis Sets for Main Row Atoms and their + Use to approximate Coulomb Potentials + K. Eichkorn, F. Weigend, O. Treutler and + R. Ahlrichs + Theo. Chem. Acc. 97: 119 (1997) + Relativistic Two-component ECP formalism + Efficient two-component self-consistent field + procedures and gradients: implementation in + TURBOMOLE and application to Au20- + A. Baldes and F. Weigend + Mol. Phys. 111: 2617 (2013) + Relativistic all-electron 2c calculations (X2C, DLU) + Efficient implementation of one- and two-component + analytical energy gradients in exact two-component + theory + Y. J. Franzke, N. Middendorf and F. Weigend + J. Chem. Phys. 148: 104110 (2018) + Exploitation of symmetry in scalar X2C response + NMR shielding tensors and chemical shifts in + scalar-relativistic local exact two-component + theory + Y. J. Franzke and F. Weigend + J. Chem. Theory Comput. 15: 1028 (2019) + + + + + ************************************************************************* + ridft + ************************************************************************* + + + + integral neglect threshold : 0.18E-10 + integral storage threshold THIZE : 0.10E-04 + integral storage threshold THIME : 5 + + B-P86 functional + exchange: LDA + Becke (B88) + correlation: LDA (VWN) + Perdew (P86) + A DFT gradient calculation using the RI-J approximation will be carried out. + + + AUXILIARY BASIS SET information: + + symmetry group of the molecule : c1 + + the group has the following generators : + c1(z) + + 1 symmetry operations found + + there are 1 real representations : a + + maximum number of shells which are related by symmetry : 1 + + + mo occupation : + irrep mo's occupied + a 18 5 + + number of basis functions : 18 + number of occupied orbitals : 5 + + + number of off-diagonal lagrangians expected : 0 + + biggest AO integral is expected to be 4.776656448 + + ------------------ + density functional + ------------------ + B-P86 functional + exchange: LDA + Becke (B88) + correlation: LDA (VWN) + Perdew (P86) + + iterations will be done with small grid + + spherical integration : Lebedev's spherical grid + spherical gridsize : 3 + i.e. gridpoints : 302 + value for diffuse not defined + radial integration : Chebyshev 2nd kind (scaling 3) + radial gridsize : 3 + integration cells : 3 + partition function : becke + partition sharpness : 3 + + + ------------------------ + RDGRAD - INFORMATION + ------------------------ + + Threshold for integral neglect (rithr1): 1E-10 + Threshold for integral neglect (rithr2): 1E-10 + Contributions to RI integral batches: + neglected integral batches: 0 + direct contribution: 55 + + **************************************** + Memory allocated for RDGRAD: 1 MiB + **************************************** + + + + nuclear repulsion energy : 9.30715477358 + + MOs are in ASCII format ! + + + reading orbital data $scfmo from file mos + orbital characterization : scfconv=8 + Deviation of MOs from orthonormality 5.839773109528323E-014 + + ---------------------------------------- + S+T+V CONTRIBUTIONS TO ENERGY GRADIENT + ---------------------------------------- + + 1e-integral 1st. derivatives will be neglected if expon. factor < 0.352378E-13 + + _________________________________ + | | + | DFTD3 V3.1 Rev 0 | + | S.Grimme, University Bonn | + | June 2014 | + | see standalone version | + | dftd3 -h for options | + |_________________________________| + + Please cite DFT-D3 work done with this code as: + S. Grimme, J. Antony, S. Ehrlich and H. Krieg, + J. Chem. Phys, 132 (2010), 154104. + If used with BJ-damping cite also + S. Grimme, S. Ehrlich and L. Goerigk, + J. Comput. Chem. 32 (2011), 1456-1465 + For DFT-D2 the reference is + S. Grimme, J. Comput. Chem., 27 (2006), 1787-1799 + +C6 coefficients used: + 2 C6 for element 1 +Z= 1 CN= 0.912 C6(AA)= 3.03 +Z= 1 CN= 0.000 C6(AA)= 7.59 + 3 C6 for element 8 +Z= 8 CN= 0.000 C6(AA)= 15.51 +Z= 8 CN= 0.993 C6(AA)= 12.82 +Z= 8 CN= 1.989 C6(AA)= 10.37 + +# XYZ [au] R0(AA) [Ang.] CN C6(AA) C8(AA) C10(AA) [au] + 1 0.00000 0.00000 -0.72558 o 0.469 1.991 10.4 210.1 5194.4 + 2 1.41713 0.00000 0.36279 h 0.363 0.997 3.1 37.4 553.5 + 3 -1.41713 0.00000 0.36279 h 0.363 0.997 3.1 37.4 553.5 + +molecular C6(AA) [au] = 44.52 + + DFT-D V3(BJ) + DF b-p + parameters + s6 : 1.0000 + s8 : 3.2822 + a1 : 0.3946 + a2 : 4.8516 + k1-k3 : 16.0000 1.3333 -4.0000 + + Edisp /kcal,au: -0.2880 -0.00045892 + + E6 /kcal : -0.1313 + E8 /kcal : -0.1567 + % E8 : 54.41 + + doing analytical gradient O(N^2) ... + + |G|= 3.332908356730437E-006 + + setting up bound for integral derivative estimation + + increment for numerical differentiation : 0.00050000 + + biggest AO integral is expected to be 4.776656448 + biggest cartesian 1st derivative AO integral is expected to be 8.648821438 + Overall gridpoints after grid construction = 13740 + + Integrated ground state density : 9.999998376409366 + + + ------------------------------------------------ + cartesian gradient of the energy (hartree/bohr) + ------------------------------------------------ + + ATOM 1 o 2 h 3 h +dE/dx 0.4687517D-13 -0.2702341D-01 0.2702341D-01 +dE/dy 0.1143160D-12 -0.4123491D-13 -0.3136620D-13 +dE/dz 0.4147683D-01 -0.2072180D-01 -0.2072180D-01 + + resulting FORCE (fx,fy,fz) = (0.325D-13,0.417D-13,0.332D-04) + resulting MOMENT (mx,my,mz) = (0.109D-12,-.112D-12,-.140D-13) + + + exx = -0.076592 eyy = 0.000000 ezz = -0.045130 + eyz = -0.000000 exz = 0.000000 exy = -0.000000 + + + ********************************************************************** + |maximum component of gradient| : 0.41476828E-01 (atom 1 o ) + gradient norm : 0.63558181E-01 + ********************************************************************** + + : data group $grad is missing + + *** cartesian gradients written onto *** + + + --- calculation of the energy gradient finished --- + + + + ------------------------------------------------------------------------ + total cpu-time : 0.09 seconds + total wall-time : 0.36 seconds + ------------------------------------------------------------------------ + + **** rdgrad : all done **** + + + 2023-01-25 00:21:45.476 + diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/rdgrad/h2o_dftd3-bj/ref_output.json b/turbomoleio/testfiles/outputs/TM_v7.6/rdgrad/h2o_dftd3-bj/ref_output.json new file mode 100644 index 0000000..3e0f37b --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/rdgrad/h2o_dftd3-bj/ref_output.json @@ -0,0 +1,66 @@ +{ + "@module": "turbomoleio.output.files", + "@class": "GradOutput", + "@version": "1.3.0", + "gradients": [ + [ + 4.687517e-14, + 1.14316e-13, + 0.04147683 + ], + [ + -0.02702341, + -4.123491e-14, + -0.0207218 + ], + [ + 0.02702341, + -3.13662e-14, + -0.0207218 + ] + ], + "dielectric": [ + [ + -0.076592, + -0.0, + 0.0 + ], + [ + -0.0, + 0.0, + -0.0 + ], + [ + 0.0, + -0.0, + -0.04513 + ] + ], + "run": { + "@module": "turbomoleio.output.data", + "@class": "RunData", + "@version": "1.3.0", + "host": "frontal3", + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:21:45.188000" + }, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:21:45.476000" + }, + "cpu_time": 0.09, + "wall_time": 0.36 + }, + "tm": { + "@module": "turbomoleio.output.data", + "@class": "TurbomoleData", + "@version": "1.3.0", + "version": "7.6", + "build": null, + "executable": "rdgrad" + }, + "memory": 1 +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/rdgrad/h2o_dftd3-bj/ref_parser.json b/turbomoleio/testfiles/outputs/TM_v7.6/rdgrad/h2o_dftd3-bj/ref_parser.json new file mode 100644 index 0000000..2eb6696 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/rdgrad/h2o_dftd3-bj/ref_parser.json @@ -0,0 +1,113 @@ +{ + "all_done": true, + "header": { + "executable": "rdgrad", + "host": "frontal3", + "tm_version": "7.6", + "tm_build": null, + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:21:45.188000" + } + }, + "centers": { + "center_of_mass": null, + "center_of_charge": null + }, + "coordinates": null, + "basis": null, + "symmetry": { + "symbol": "c1", + "n_reps": 1, + "reps": [ + "a" + ] + }, + "cosmo_header": null, + "density_functional_data": { + "functional_msg": "B-P86 functional\n exchange: LDA + Becke (B88)\n correlation: LDA (VWN) + Perdew (P86)", + "functional_name": "b-p", + "functional_type": "GGA", + "xcfun": null, + "spherical_gridsize": 3, + "gridpoints": 302 + }, + "rij_info": null, + "dftd": null, + "pre_scf_run": null, + "scf_iterations": null, + "scf_energies": null, + "cosmo_results": null, + "electrostatic_moments": null, + "timings": { + "cpu_time": 0.09, + "wall_time": 0.36, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:21:45.476000" + } + }, + "s2": null, + "is_uhf": false, + "fermi": null, + "integral": { + "integral_neglect_threshold": 1.8e-11, + "thize": 1e-05, + "thime": 5 + }, + "pre_escf_run": null, + "escf_iterations": null, + "escf_gs_total_en": null, + "escf_excitations": null, + "rdgrad_memory": 1, + "gradient": { + "gradients": [ + [ + 4.687517e-14, + 1.14316e-13, + 0.04147683 + ], + [ + -0.02702341, + -4.123491e-14, + -0.0207218 + ], + [ + 0.02702341, + -3.13662e-14, + -0.0207218 + ] + ], + "dielectric": [ + [ + -0.076592, + -0.0, + 0.0 + ], + [ + -0.0, + 0.0, + -0.0 + ], + [ + 0.0, + -0.0, + -0.04513 + ] + ] + }, + "egrad_excited_state": null, + "statpt_info": null, + "relax_info": null, + "relax_gradient_values": null, + "relax_conv_info": null, + "aoforce_numerical_integration": null, + "aoforce_analysis": null, + "mp2_results": { + "energy": null + }, + "riper_scf_energies": null, + "periodicity_data": null +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/relax/h2o_cartesian/ref_output.json b/turbomoleio/testfiles/outputs/TM_v7.6/relax/h2o_cartesian/ref_output.json new file mode 100644 index 0000000..54e55e0 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/relax/h2o_cartesian/ref_output.json @@ -0,0 +1,59 @@ +{ + "@module": "turbomoleio.output.files", + "@class": "RelaxOutput", + "@version": "1.3.0", + "info": { + "@module": "turbomoleio.output.data", + "@class": "RelaxData", + "@version": "1.3.0", + "optimizations": [ + "CARTESIAN coordinates" + ], + "thr_int_coord": null + }, + "gradients": null, + "convergence": { + "@module": "turbomoleio.output.data", + "@class": "RelaxConvergenceData", + "@version": "1.3.0", + "energy_change": { + "value": 75.8805607, + "thr": 1e-06, + "conv": false + }, + "rms_displ": null, + "max_displ": null, + "rms_grad": null, + "max_grad": { + "value": 0.0789413, + "thr": 0.001, + "conv": false + } + }, + "run": { + "@module": "turbomoleio.output.data", + "@class": "RunData", + "@version": "1.3.0", + "host": "frontal3", + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:21:48.542000" + }, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:21:48.896000" + }, + "cpu_time": 0.05, + "wall_time": 0.46 + }, + "tm": { + "@module": "turbomoleio.output.data", + "@class": "TurbomoleData", + "@version": "1.3.0", + "version": "7.6", + "build": null, + "executable": "relax" + } +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/relax/h2o_cartesian/ref_parser.json b/turbomoleio/testfiles/outputs/TM_v7.6/relax/h2o_cartesian/ref_parser.json new file mode 100644 index 0000000..12113c6 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/relax/h2o_cartesian/ref_parser.json @@ -0,0 +1,84 @@ +{ + "all_done": true, + "header": { + "executable": "relax", + "host": "frontal3", + "tm_version": "7.6", + "tm_build": null, + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:21:48.542000" + } + }, + "centers": { + "center_of_mass": null, + "center_of_charge": null + }, + "coordinates": null, + "basis": null, + "symmetry": { + "symbol": "c1", + "n_reps": null, + "reps": null + }, + "cosmo_header": null, + "density_functional_data": null, + "rij_info": null, + "dftd": null, + "pre_scf_run": null, + "scf_iterations": null, + "scf_energies": null, + "cosmo_results": null, + "electrostatic_moments": null, + "timings": { + "cpu_time": 0.05, + "wall_time": 0.46, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:21:48.896000" + } + }, + "s2": null, + "is_uhf": false, + "fermi": null, + "integral": null, + "pre_escf_run": null, + "escf_iterations": null, + "escf_gs_total_en": null, + "escf_excitations": null, + "rdgrad_memory": null, + "gradient": null, + "egrad_excited_state": null, + "statpt_info": null, + "relax_info": { + "optimizations": [ + "CARTESIAN coordinates" + ], + "thr_int_coord": null + }, + "relax_gradient_values": null, + "relax_conv_info": { + "energy_change": { + "value": 75.8805607, + "thr": 1e-06, + "conv": false + }, + "rms_displ": null, + "rms_grad": null, + "max_displ": null, + "max_grad": { + "value": 0.0789413, + "thr": 0.001, + "conv": false + } + }, + "aoforce_numerical_integration": null, + "aoforce_analysis": null, + "mp2_results": { + "energy": null + }, + "riper_scf_energies": null, + "periodicity_data": null +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/relax/h2o_cartesian/relax.log b/turbomoleio/testfiles/outputs/TM_v7.6/relax/h2o_cartesian/relax.log new file mode 100644 index 0000000..b34b3f0 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/relax/h2o_cartesian/relax.log @@ -0,0 +1,272 @@ + + relax (frontal3) : TURBOMOLE rev. V7-6 19 Oct 2021 at 10:10:11 compiled Oct 19th 2021 + Copyright (C) 2021 TURBOMOLE GmbH, Karlsruhe + + + 2023-01-25 00:21:48.542 + + + + this is R E L A X + + + conversion cartesian <---> internal coordinates + coordinate and force constant update in optimizations + + by heinz schiffer, hans horn, christoph koelmel, + marco haeser, michael ehrig, and reinhart ahlrichs + + quantum chemistry group + universitaet karlsruhe + germany + + + + ************************************************************************* + dscf + ************************************************************************* + + + +------------------------------------------------------------------------ + $optimize + + optimization will be performed with respect to + - CARTESIAN coordinates + +------------------------------------------------------------------------ + $coordinateupdate + + upper limit for coordinate changes = 0.3000 + interpolation/extrapolation has been enabled + display optimization statistics for the last 5 cycles + + ------------------------------------------------------------------------------ + + relaxation of NUCLEAR COORDINATES in cartesian space + + ------------------------------------------------------------------------------ + + + number of optimization cycles : 1 + coordinate update delimiter : 0.30000 + +!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! + NOTE that the hessian will NOT be updated since + - no update method has been specified + - #(available geoms) = 1 is smaller than mingeo = 3 +!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! + + + method for the update of the Hessian-matrix : 0 (no update) + + number of previous coordinate sets available : 1 + lower threshold for eigenvalues of the Hessian : 0.00500 + reset value : 0.00500 + upper threshold for eigenvalues of the Hessian : 3.0000 + + + ATOM CARTESIAN COORDINATES + 1 o 0.00000000000000 0.00000000000000 -0.72557892405437 + 2 h 1.41713420892173 0.00000000000000 0.36278946202719 + 3 h -1.41713420892173 0.00000000000000 0.36278946202719 + + --------------------------------------------------------------------- + + SYMMETRY HANDLING + + symmetry group of the molecule : c1 + + the group has the following generators : + c1(z) + + 1 symmetry operations found + + --------------------------------------------------------------------- + + PROCESS AND ANALYZE INPUT INFORMATION ... + + + total number of atoms : 3 + number of SYMMETRY INDEPENDENT atoms : 3 + + + NUMBER OF SYMMETRY RESTRICTED DEGREES OF FREEDOM : 9 + CONSTITUTED BY 3 DEGREES OF TRANSLATIONAL MOTIONS + 3 ROTATIONAL + 3 INTERNAL + + + --------------------------------------------------------------------- + + ATOM CARTESIAN GRADIENTS + 1 o 0.00000000000014 0.00000000000001 0.07894128956038 + 2 h -0.06693004251482 -0.00000000000002 -0.03944674406769 + 3 h 0.06693004251498 0.00000000000001 -0.03944674406760 + + cartesian forces do not vanish : sum(F) = 0.00004780 + x-component= 0.00000000 y-component= 0.00000000 z-component= 0.00004780 + + NUMBER OF SYMMETRY NON-REDUNDANT DEGREES OF FREEDOM + FOR OPTIMIZATION IN CARTESIAN SPACE : 9 + ENERGY = -75.8805606765 a.u.; # of cycle = 1 + + 1. ( 1o x ) 0.00000000 0.00000000 + 2. ( 1o y ) 0.00000000 0.00000000 + 3. ( 1o z ) -0.72557892 0.07894129 + 4. ( 2h x ) 1.41713421 -0.06693004 + 5. ( 2h y ) 0.00000000 -0.00000000 + 6. ( 2h z ) 0.36278946 -0.03944674 + 7. ( 3h x ) -1.41713421 0.06693004 + 8. ( 3h y ) 0.00000000 0.00000000 + 9. ( 3h z ) 0.36278946 -0.03944674 + + norm of actual CARTESIAN gradient : .13529 + + + force constant matrix will be initialized using + default DIAGONAL elements + + + input hessian will NOT be updated ! + + COORDINATE TYPE FORCE CONSTANT + (this assignment may be invalid in the case of strong coupled coordinates!) + + 1. ( 1o x ) 0.50000 + 2. ( 1o y ) 0.50000 + 3. ( 1o z ) 0.50000 + 4. ( 2h x ) 0.50000 + 5. ( 2h y ) 0.50000 + 6. ( 2h z ) 0.50000 + 7. ( 3h x ) 0.50000 + 8. ( 3h y ) 0.50000 + 9. ( 3h z ) 0.50000 + + +------------------------------------------------------------------------ + + PROVIDING UPDATED COORDINATES by QUASI-NEWTON STEP ... + +------------------------------------------------------------------------ +length of quasi-newton displacement vector for atom 1 is limited to 0.10 + + predicted ENERGY CHANGE : -16.01842 mHartree + (note that only an approximate hessian is used) + + NORM OF COORDINATE CHANGE IS 0.24142 + + + geometry change & new cartesians : + 1. ( 1o x ) -0.0000000000 -0.0000000000 + 2. ( 1o y ) -0.0000000000 -0.0000000000 + 3. ( 1o z ) -0.1000000000 -0.8255789241 + 4. ( 2h x ) 0.1338600850 1.5509942940 + 5. ( 2h y ) 0.0000000000 0.0000000000 + 6. ( 2h z ) 0.0788934881 0.4416829502 + 7. ( 3h x ) -0.1338600850 -1.5509942940 + 8. ( 3h y ) -0.0000000000 -0.0000000000 + 9. ( 3h z ) 0.0788934881 0.4416829502 + change and new values without conversion factor qout: + -0.0000000000 -0.0000000000 + -0.0000000000 -0.0000000000 + -0.1000000000 -0.8255789241 + 0.1338600850 1.5509942940 + 0.0000000000 0.0000000000 + 0.0788934881 0.4416829502 + -0.1338600850 -1.5509942940 + -0.0000000000 -0.0000000000 + 0.0788934881 0.4416829502 + + Updated coordinates will not be transformed into principal axis system + + ******************************************* + ATOM NEW CARTESIAN COORDINATES + + 1 o -0.00000000000017 -0.00000000000002 -0.82557892405437 + 2 h 1.55099429395137 0.00000000000004 0.44168295016256 + 3 h -1.55099429395170 -0.00000000000002 0.44168295016240 + + cartesian coordinates written on $coord + ******************************************* + + + --------------------------------------------------------------------- + dscf + Optimization statistics for 1 cycles + --------------------------------------------------------------------- + + cartesian coordinate no. 1. ( 1o x ) + cycle coordinate gradient + 1 0.00000000 0.00000000 + 2 -0.00000000 + + cartesian coordinate no. 2. ( 1o y ) + cycle coordinate gradient + 1 0.00000000 0.00000000 + 2 -0.00000000 + + cartesian coordinate no. 3. ( 1o z ) + cycle coordinate gradient + 1 -0.72557892 0.07894129 + 2 -0.82557892 + + cartesian coordinate no. 4. ( 2h x ) + cycle coordinate gradient + 1 1.41713421 -0.06693004 + 2 1.55099429 + + cartesian coordinate no. 5. ( 2h y ) + cycle coordinate gradient + 1 0.00000000 -0.00000000 + 2 0.00000000 + + cartesian coordinate no. 6. ( 2h z ) + cycle coordinate gradient + 1 0.36278946 -0.03944674 + 2 0.44168295 + + cartesian coordinate no. 7. ( 3h x ) + cycle coordinate gradient + 1 -1.41713421 0.06693004 + 2 -1.55099429 + + cartesian coordinate no. 8. ( 3h y ) + cycle coordinate gradient + 1 0.00000000 0.00000000 + 2 -0.00000000 + + cartesian coordinate no. 9. ( 3h z ) + cycle coordinate gradient + 1 0.36278946 -0.03944674 + 2 0.44168295 + + Norm of cartesian gradient vectors : + cycle norm + 1 .13529 + + Energy statistics (Hartree) : + 1 -75.880560677 + + $forceinit flag ' on ' will be switched off ! + + + ****************************************************************** + CONVERGENCE INFORMATION + + Converged? Value Criterion + Energy change no 75.8805607 0.0000010 + MAX geom. grad. no 0.0789413 0.0010000 + ****************************************************************** + + + ------------------------------------------------------------------------ + total cpu-time : 0.05 seconds + total wall-time : 0.46 seconds + ------------------------------------------------------------------------ + + **** relax : all done **** + + + 2023-01-25 00:21:48.896 + diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/relax/h2o_internal/ref_output.json b/turbomoleio/testfiles/outputs/TM_v7.6/relax/h2o_internal/ref_output.json new file mode 100644 index 0000000..921277e --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/relax/h2o_internal/ref_output.json @@ -0,0 +1,66 @@ +{ + "@module": "turbomoleio.output.files", + "@class": "RelaxOutput", + "@version": "1.3.0", + "info": { + "@module": "turbomoleio.output.data", + "@class": "RelaxData", + "@version": "1.3.0", + "optimizations": [ + "INTERNAL coordinates" + ], + "thr_int_coord": 1e-07 + }, + "gradients": { + "@module": "turbomoleio.output.data", + "@class": "RelaxGradientsData", + "@version": "1.3.0", + "norm_cartesian": 0.063424, + "norm_internal": 0.048102, + "max_internal": 0.048102 + }, + "convergence": { + "@module": "turbomoleio.output.data", + "@class": "RelaxConvergenceData", + "@version": "1.3.0", + "energy_change": { + "value": 76.3427622, + "thr": 1e-06, + "conv": false + }, + "rms_displ": null, + "max_displ": null, + "rms_grad": null, + "max_grad": { + "value": 0.0481023, + "thr": 0.001, + "conv": false + } + }, + "run": { + "@module": "turbomoleio.output.data", + "@class": "RunData", + "@version": "1.3.0", + "host": "frontal3", + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:21:51.210000" + }, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:21:51.541000" + }, + "cpu_time": 0.04, + "wall_time": 0.4 + }, + "tm": { + "@module": "turbomoleio.output.data", + "@class": "TurbomoleData", + "@version": "1.3.0", + "version": "7.6", + "build": null, + "executable": "relax" + } +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/relax/h2o_internal/ref_parser.json b/turbomoleio/testfiles/outputs/TM_v7.6/relax/h2o_internal/ref_parser.json new file mode 100644 index 0000000..2ecf895 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/relax/h2o_internal/ref_parser.json @@ -0,0 +1,88 @@ +{ + "all_done": true, + "header": { + "executable": "relax", + "host": "frontal3", + "tm_version": "7.6", + "tm_build": null, + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:21:51.210000" + } + }, + "centers": { + "center_of_mass": null, + "center_of_charge": null + }, + "coordinates": null, + "basis": null, + "symmetry": { + "symbol": "c2v", + "n_reps": null, + "reps": null + }, + "cosmo_header": null, + "density_functional_data": null, + "rij_info": null, + "dftd": null, + "pre_scf_run": null, + "scf_iterations": null, + "scf_energies": null, + "cosmo_results": null, + "electrostatic_moments": null, + "timings": { + "cpu_time": 0.04, + "wall_time": 0.4, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:21:51.541000" + } + }, + "s2": null, + "is_uhf": false, + "fermi": null, + "integral": null, + "pre_escf_run": null, + "escf_iterations": null, + "escf_gs_total_en": null, + "escf_excitations": null, + "rdgrad_memory": null, + "gradient": null, + "egrad_excited_state": null, + "statpt_info": null, + "relax_info": { + "optimizations": [ + "INTERNAL coordinates" + ], + "thr_int_coord": 1e-07 + }, + "relax_gradient_values": { + "norm_cartesian": 0.063424, + "norm_internal": 0.048102, + "max_internal": 0.048102 + }, + "relax_conv_info": { + "energy_change": { + "value": 76.3427622, + "thr": 1e-06, + "conv": false + }, + "rms_displ": null, + "rms_grad": null, + "max_displ": null, + "max_grad": { + "value": 0.0481023, + "thr": 0.001, + "conv": false + } + }, + "aoforce_numerical_integration": null, + "aoforce_analysis": null, + "mp2_results": { + "energy": null + }, + "riper_scf_energies": null, + "periodicity_data": null +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/relax/h2o_internal/relax.log b/turbomoleio/testfiles/outputs/TM_v7.6/relax/h2o_internal/relax.log new file mode 100644 index 0000000..a1ac9c9 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/relax/h2o_internal/relax.log @@ -0,0 +1,231 @@ + + relax (frontal3) : TURBOMOLE rev. V7-6 19 Oct 2021 at 10:10:11 compiled Oct 19th 2021 + Copyright (C) 2021 TURBOMOLE GmbH, Karlsruhe + + + 2023-01-25 00:21:51.210 + + + + this is R E L A X + + + conversion cartesian <---> internal coordinates + coordinate and force constant update in optimizations + + by heinz schiffer, hans horn, christoph koelmel, + marco haeser, michael ehrig, and reinhart ahlrichs + + quantum chemistry group + universitaet karlsruhe + germany + + + + ************************************************************************* + dscf + ************************************************************************* + + + +------------------------------------------------------------------------ + $optimize + + optimization will be performed with respect to + - INTERNAL coordinates + +------------------------------------------------------------------------ + $coordinateupdate + + upper limit for coordinate changes = 0.3000 + interpolation/extrapolation has been enabled + display optimization statistics for the last 5 cycles + + ------------------------------------------------------------------------------ + + relaxation of NUCLEAR COORDINATES in delocalized coordinates + + ------------------------------------------------------------------------------ + + + max. nb. of iterations for internal --> cartesian : 25 + convergence criterion for internal coordinates : 0.10E-06 + + number of optimization cycles : 1 + coordinate update delimiter : 0.30000 + +!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! + NOTE that the hessian will NOT be updated since + - no update method has been specified + - #(available geoms) = 1 is smaller than mingeo = 3 +!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! + + + method for the update of the Hessian-matrix : 0 (no update) + + number of previous coordinate sets available : 1 + lower threshold for eigenvalues of the Hessian : 0.00500 + reset value : 0.00500 + upper threshold for eigenvalues of the Hessian : 3.0000 + +reading data block $redundant from file + NUMBER OF ATOMS: 3 + DEGREES OF FREEDOM: 2 + INTERNAL COORDINATES: 2 + + ATOM CARTESIAN COORDINATES + 1 o 0.00000000000000 0.00000000000000 -0.72557892405437 + 2 h 1.41713420892173 0.00000000000000 0.36278946202719 + 3 h -1.41713420892173 0.00000000000000 0.36278946202719 + + --------------------------------------------------------------------- + + SYMMETRY HANDLING + + symmetry group of the molecule : c2v + + the group has the following generators : + c2(z) + mirror plane sigma(xz) + + 4 symmetry operations found + + --------------------------------------------------------------------- + + PROCESS AND ANALYZE INPUT INFORMATION ... + + + total number of atoms : 3 + number of SYMMETRY INDEPENDENT atoms : 2 + + + NUMBER OF SYMMETRY RESTRICTED DEGREES OF FREEDOM : 3 + CONSTITUTED BY 1 DEGREES OF TRANSLATIONAL MOTIONS + 0 ROTATIONAL + 2 INTERNAL + + + --------------------------------------------------------------------- + reading data block $redundant from file + rredun: nuclear degrees of freedom 2 + rredun: number of frozen coordinates 0 + + ATOM CARTESIAN GRADIENTS + 1 o 0.00000000000000 0.00000000000000 0.04134788444235 + 2 h -0.02701366789371 0.00000000000000 -0.02065736611096 + 3 h 0.02701366789371 0.00000000000000 -0.02065736611096 + + cartesian forces do not vanish : sum(F) = 0.00003315 + x-component= 0.00000000 y-component= 0.00000000 z-component= 0.00003315 + Optint: norm of internal gradient 0.04810247 + + DELOCALIZED INTERNAL COORDINATES and GRADIENTS : + + (ENERGY is -76.3427621525 a.u.; cycle index is 1) + (b) : internal coordinate value (normalized) + (b) : gradient with respect to normalized coordinate (a) + + (a) (b) +delocalized internal coordinate 2.5269805 -0.04810235 +delocalized internal coordinate 1.8317405 -0.00011090 + + norm of actual CARTESIAN gradient : .63424E-01 + norm of actual INTERNAL gradient : .48102E-01 + + maximum norm of actual INTERNAL gradient : .48102E-01 + + + force constant matrix will be initialized using + default DIAGONAL elements + + + input hessian will NOT be updated ! + +------------------------------------------------------------------------ + + PROVIDING UPDATED COORDINATES by QUASI-NEWTON STEP ... + +------------------------------------------------------------------------ + + predicted ENERGY CHANGE : -2.31387 mHartree + (note that only an approximate hessian is used) + + NORM OF COORDINATE CHANGE IS 0.09621 + + + geometry change & new internal coordinates : +delocalized internal coordinate 0.0962046924 2.6231851474 +delocalized internal coordinate 0.0005545078 1.8322950296 + + **** convergence reached within 2 iterations **** + + Updated coordinates will be transformed into principal axis system + + ******************************************* + ATOM NEW CARTESIAN COORDINATES + + 1 o 0.00000000000000 0.00000000000000 -0.12638085585314 + 2 h 1.47139912236478 0.00000000000000 1.00301490378521 + 3 h -1.47139912236478 0.00000000000000 1.00301490378521 + + cartesian coordinates written on $coord + ******************************************* + rredun: nuclear degrees of freedom 2 + rredun: number of frozen coordinates 0 + + + --------------------------------------------------------------------- + dscf + Optimization statistics for 1 cycles + --------------------------------------------------------------------- + + delocalized internal coordinate no. 1 + + cycle value gradient + (a) (b) + 1 2.52698045 -0.04810235 + 2 2.62318515 + + delocalized internal coordinate no. 2 + + cycle value gradient + (a) (b) + 1 1.83174052 -0.00011090 + 2 1.83229503 + + NOTES : + (a) value of delocalized internal coordinate + (b) gradient with respect to delocalized coordinate (a) + + + Norm of cartesian and internal gradient vectors : + cycle cartesian norm internal norm maximum norm (*) + 1 .63424E-01 .48102E-01 .48102E-01 + + (*) maximum component of internal gradient + + Energy statistics (Hartree) : + 1 -76.342762153 + + $forceinit flag ' on ' will be switched off ! + + + ****************************************************************** + CONVERGENCE INFORMATION + + Converged? Value Criterion + Energy change no 76.3427622 0.0000010 + MAX geom. grad. no 0.0481023 0.0010000 + ****************************************************************** + + + ------------------------------------------------------------------------ + total cpu-time : 0.04 seconds + total wall-time : 0.40 seconds + ------------------------------------------------------------------------ + + **** relax : all done **** + + + 2023-01-25 00:21:51.541 + diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/ricc2/h2o_std_mp2/ref_output.json b/turbomoleio/testfiles/outputs/TM_v7.6/ricc2/h2o_std_mp2/ref_output.json new file mode 100644 index 0000000..652efda --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/ricc2/h2o_std_mp2/ref_output.json @@ -0,0 +1,37 @@ +{ + "@module": "turbomoleio.output.files", + "@class": "Ricc2Output", + "@version": "1.3.0", + "mp2": { + "@module": "turbomoleio.output.data", + "@class": "MP2Results", + "@version": "1.3.0", + "energy": -76.1252418683 + }, + "run": { + "@module": "turbomoleio.output.data", + "@class": "RunData", + "@version": "1.3.0", + "host": "frontal3", + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:21:53.996000" + }, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:21:57.366000" + }, + "cpu_time": 0.35, + "wall_time": 3.41 + }, + "tm": { + "@module": "turbomoleio.output.data", + "@class": "TurbomoleData", + "@version": "1.3.0", + "version": "7.6", + "build": null, + "executable": "ricc2" + } +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/ricc2/h2o_std_mp2/ref_parser.json b/turbomoleio/testfiles/outputs/TM_v7.6/ricc2/h2o_std_mp2/ref_parser.json new file mode 100644 index 0000000..2053a39 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/ricc2/h2o_std_mp2/ref_parser.json @@ -0,0 +1,155 @@ +{ + "all_done": true, + "header": { + "executable": "ricc2", + "host": "frontal3", + "tm_version": "7.6", + "tm_build": null, + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:21:53.996000" + } + }, + "centers": { + "center_of_mass": [ + 0.0, + 0.0, + -0.60378908 + ], + "center_of_charge": [ + 0.0, + 0.0, + -0.50790525 + ] + }, + "coordinates": { + "coords": [ + [ + 0.0, + 0.0, + -0.72557892 + ], + [ + 1.41713421, + 0.0, + 0.36278946 + ], + [ + -1.41713421, + 0.0, + 0.36278946 + ] + ], + "species": [ + "o", + "h", + "h" + ], + "charges": [ + 8.0, + 1.0, + 1.0 + ], + "isotopes": [ + 0, + 0, + 0 + ] + }, + "basis": { + "basis_per_specie": { + "o": "def-SV(P)", + "h": "def-SV(P)" + }, + "aux_basis_per_specie": {}, + "number_scf_basis_func": 18, + "number_scf_aux_basis_func": null + }, + "symmetry": { + "symbol": "c1", + "n_reps": 1, + "reps": [ + "a" + ] + }, + "cosmo_header": null, + "density_functional_data": null, + "rij_info": null, + "dftd": null, + "pre_scf_run": null, + "scf_iterations": null, + "scf_energies": null, + "cosmo_results": null, + "electrostatic_moments": null, + "timings": { + "cpu_time": 0.35, + "wall_time": 3.41, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:21:57.366000" + } + }, + "s2": null, + "is_uhf": false, + "fermi": null, + "integral": { + "integral_neglect_threshold": 1e-08, + "thize": 1e-05, + "thime": 5 + }, + "pre_escf_run": null, + "escf_iterations": null, + "escf_gs_total_en": null, + "escf_excitations": null, + "rdgrad_memory": null, + "gradient": { + "gradients": [ + [ + 0.0, + 8.110119e-14, + 0.02753525 + ], + [ + -0.02103091, + -3.793611e-14, + -0.01376763 + ], + [ + 0.02103091, + -4.316508e-14, + -0.01376763 + ] + ], + "dielectric": [ + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ] + ] + }, + "egrad_excited_state": null, + "statpt_info": null, + "relax_info": null, + "relax_gradient_values": null, + "relax_conv_info": null, + "aoforce_numerical_integration": null, + "aoforce_analysis": null, + "mp2_results": { + "energy": -76.1252418683 + }, + "riper_scf_energies": null, + "periodicity_data": null +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/ricc2/h2o_std_mp2/ricc2.log b/turbomoleio/testfiles/outputs/TM_v7.6/ricc2/h2o_std_mp2/ricc2.log new file mode 100644 index 0000000..a028f7e --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/ricc2/h2o_std_mp2/ricc2.log @@ -0,0 +1,559 @@ + + ricc2 (frontal3) : TURBOMOLE rev. V7-6 19 Oct 2021 at 10:10:11 compiled Oct 19th 2021 + Copyright (C) 2021 TURBOMOLE GmbH, Karlsruhe + + + 2023-01-25 00:21:53.996 + + + + R I C C 2 - PROGRAM + + the quantum chemistry groups + at the universities in + Karlsruhe & Bochum + Germany + + + + *-----------------------------------------------------------------------* + | program will use 1 thread(s) | + *-----------------------------------------------------------------------* + + + +--------------------------------------------------+ + | Atomic coordinate, charge and isotop information | + +--------------------------------------------------+ + + atomic coordinates atom charge isotop + 0.00000000 0.00000000 -0.72557892 o 8.000 0 + 1.41713421 0.00000000 0.36278946 h 1.000 0 + -1.41713421 0.00000000 0.36278946 h 1.000 0 + + center of nuclear mass : 0.00000000 0.00000000 -0.60378908 + center of nuclear charge: 0.00000000 0.00000000 -0.50790525 + + ************************************************************************* + ridft_rimp2 + ************************************************************************* + + + + +--------------------------------------------------+ + | basis set information | + +--------------------------------------------------+ + + we will work with the 1s 3p 5d 7f 9g ... basis set + ...i.e. with spherical basis functions... + + type atoms prim cont basis + --------------------------------------------------------------------------- + o 1 24 14 def-SV(P) [3s2p1d|7s4p1d] + h 2 4 2 def-SV(P) [2s|4s] + --------------------------------------------------------------------------- + total: 3 32 18 + --------------------------------------------------------------------------- + + total number of primitive shells : 16 + total number of contracted shells : 10 + total number of cartesian basis functions : 19 + total number of SCF-basis functions : 18 + + + symmetry group of the molecule : c1 + + the group has the following generators : + c1(z) + + 1 symmetry operations found + + there are 1 real representations : a + + + ========================================================================= + + + restricted closed shell calculation for the wavefunction models: + MP2 - Second Order Moeller Plesset PT + + + global parameters for ricc2 program: + + hard restart (reuse of interm.) : disabled + soft restart (reuse of vectors) : disabled + threshold for vector function : 0.100000E-05 + convergence threshold energy : 0.100000E-06 + linear dependence threshold : 0.100000E-13 + global print level : 1 + maximum number of iterations : 200 + maximum number DIIS vectors : 10 + max. dim. of reduced space : 100 + core memory limit (MB) : 500 + + + this is a ground state geometry optimization run at the MP2 level + + Scratch Directory : + + + ========================================================================= + + der. integral neglect threshold : 0.10E-07 + integral neglect threshold : 0.18E-09 + integral storage threshold THIZE : 0.10E-04 + integral storage threshold THIME : 5 + + + +---------------------------------------------+ + | RI-SCF/CPHF auxiliary basis set information | + +---------------------------------------------+ + + we will work with the 1s 3p 5d 7f 9g ... basis set + ...i.e. with spherical basis functions... + + type atoms prim cont basis + --------------------------------------------------------------------------- + o 1 97 77 def-SV(P) [10s8p4d2f1g|14s10p6d2f1g] + h 2 20 18 def-SV(P) [2s2p2d|4s2p2d] + --------------------------------------------------------------------------- + total: 3 137 113 + --------------------------------------------------------------------------- + + total number of primitive shells : 41 + total number of contracted shells : 37 + total number of cartesian basis functions : 133 + total number of SCF-basis functions : 113 + + + +------------------------------------------+ + | Auxiliary basis set information | + +------------------------------------------+ + + we will work with the 1s 3p 5d 7f 9g ... basis set + ...i.e. with spherical basis functions... + + type atoms prim cont basis + --------------------------------------------------------------------------- + o 1 72 48 def-SV(P) [6s5p4d1f|8s6p5d3f] + h 2 23 14 def-SV(P) [3s2p1d|4s3p2d] + --------------------------------------------------------------------------- + total: 3 118 76 + --------------------------------------------------------------------------- + + total number of primitive shells : 31 + total number of contracted shells : 28 + total number of cartesian basis functions : 85 + total number of SCF-basis functions : 76 + + + maximum number of shells which are related by symmetry : 1 + + + The symmetry information takes 1 MB + +*---------------------------------------------------------------------* +| simplified C1 algorithm will be applied | +*---------------------------------------------------------------------* + MOs are in ASCII format ! + + + reading orbital data $scfmo from file mos + orbital characterization : scfconv=7 + time elapsed for calculating density matrices : 0.001 sec + + + + +--------------------------------------------+ + | list of orbitals that will be kept frozen: | + +--------------------------------------------+ + | irrep index energy occ/vir | + +--------------------------------------------+ + | a 1 -20.5401 occupied | + +--------------------------------------------+ + + + + Molecular Orbital Statistic: + ============================ + + ----------------------------- + orbitals in total: + ----------------------------- + frozen occupied : 1 + active occupied : 4 + active virtual : 13 + frozen virtual : 0 + all together : 18 + ----------------------------- + + + time in riccmos cpu: 0.00 sec wall: 0.07 sec ratio: 0.1 + + total memory allocated for calculation of (Q|P)**(-1/2) : 1 MiB + + + calculation of (P|Q) ... + time in lp2sym cpu: 0.00 sec wall: 0.00 sec ratio: 0.0 + + + calculation of the Cholesky decomposition of (P|Q)**(-1) ... + time in invmetri cpu: 0.00 sec wall: 0.04 sec ratio: 0.1 + + threshold for RMS(d[D]) in SCF was : 0.10E-06 + integral neglect threshold : 0.18E-09 + derivative integral neglect threshold : 0.10E-07 + + + setting up bound for integral derivative estimation + + increment for numerical differentiation : 0.00050000 + + ========================================================================= + + Energy of reference wave function is -75.9382746049200 + Maximum orbital residual is 0.4980137546745E-05 + + + Number of symmetry-nonredundant auxiliary basis functions: 76 + + Block lengths for integral files: + frozen occupied (BOI): 1 MiB + active occupied (BJI): 1 MiB + active virtual (BAI): 1 MiB + frozen virtual (BGI): 0 MiB + general (BTI): 1 MiB + + ========================================================================= + + + + A RI-SCF based gradient calculation will be done. + A "jkbas" type auxiliary basis is used for RI-SCF and/or RI-CPHF. + + The semi-canonical algorithm will be used for densities + + + ======== CC DENSITY MODULE ======== + + current wave-function model: MP2 + + calculating CC ground state density + + a semicanonical algorithm will be used when possible + + density nr. cpu/min wall/min L R + ------------------------------------------------------ + 1 0.00 0.00 L0 R0 + ------------------------------------------------------ + time in cc_1den cpu: 0.01 sec wall: 0.08 sec ratio: 0.1 + + reading orbital data $scfmo from file mos + orbital characterization : scfconv=7 + + EMP2 : -76.125241868255 + EMP2 from traces: -76.125241868255 + Delta : 0.000000000000 + + -------------------------------------------------------------------------- + + Solving RI-CPHF equations using a "jkbas" type auxiliary basis + + + ======== LINEAR CC RESPONSE SOLVER ======== + + threshold for convergence: 1.00E-05 + maximum number of simultaneous Jacobi matrix transformations: 1 + + summary of start vectors generation: + ------------------------------------------- + type of solution vectors : l0o + symmetry : a + number of vectors requested : 1 + number of vectors generated : 1 + ------------------------------------------- + + + Iter #Vectors time (min) max. residual + -------------------------------------------- + 1 1 0.00 0.16E+00 ( 1) + 2 1 0.00 0.41E-01 ( 1) + 3 1 0.00 0.77E-02 ( 1) + 4 1 0.00 0.13E-02 ( 1) + 5 1 0.00 0.29E-03 ( 1) + 6 1 0.00 0.47E-04 ( 1) + 7 1 0.00 0.88E-05 ( 1) + -------------------------------------------- + converged in 7 iterations + + Total time 0.03 minutes + + + =========================================== + + + -------------------------------------------------------------------------- + + 1e-integral 1st. derivatives will be neglected if expon. factor < 0.100000E-11 + + + + +--------------------------------------------------------------------+ + | MP2 unrelaxed natural orbital occupation numbers | + +--------------------------------------------------------------------+ + | natural orb. | occupation numbers | + +---------------+----------------------------------------------------+ + | a | | + | 1 - 5 | 2.0000 1.9871 1.9756 1.9727 1.9717 | + | 6 - 10 | 0.0227 0.0210 0.0173 0.0107 0.0047 | + | 11 - 14 | 0.0043 0.0035 0.0034 0.0033 | + +---------------+----------------------------------------------------+ + natural orbitals with occ < 0.10E-02 are not shown + + Maximum change in occupation number: + occupied : -1.41 % ( 5 a ) + virtual : 1.14 % ( 6 a ) + + + +--------------------------------------------------------------------+ + | MP2 relaxed natural orbital occupation numbers | + +--------------------------------------------------------------------+ + | natural orb. | occupation numbers | + +---------------+----------------------------------------------------+ + | a | | + | 1 - 5 | 2.0000 1.9871 1.9756 1.9729 1.9720 | + | 6 - 10 | 0.0227 0.0210 0.0172 0.0107 0.0047 | + | 11 - 14 | 0.0043 0.0035 0.0034 0.0033 | + +---------------+----------------------------------------------------+ + natural orbitals with occ < 0.10E-02 are not shown + + Maximum change in occupation number: + occupied : -1.40 % ( 5 a ) + virtual : 1.13 % ( 6 a ) + + + ************************************************************** + * * + *<<<<<<<<<< GROUND STATE FIRST-ORDER PROPERTIES >>>>>>>>>>>* + * * + ************************************************************** + + + ------------------------------------------------ + Method : MP2 + Total Energy : -76.1252418683 + ------------------------------------------------ + + + ------------------------------------------------ + moments of inertia + 2.121 4.049 6.169 in a.u. + + rotational constants + 28.38596 14.86944 9.75793 in cm**(-1) + ------------------------------------------------ + + + NOTE: unrelaxed properties printed below refer to the MP1 wavefunction and + are only correct through first order in the fluctuation potential! + + +===========================================================================+ + | OPERATOR | EXPECTAT. VALUE | ELECTRONIC CONT. | NUCLEAR CONTRIB. | + +==================+==================+==================+==================+ + | | | | | + | xdiplen (unrel) | 0.00000000 | 0.00000000 | 0.00000000 | + | xdiplen (relax) | 0.00000000 | 0.00000000 | 0.00000000 | + | | | | | + | ydiplen (unrel) | -0.00000000 | -0.00000000 | 0.00000000 | + | ydiplen (relax) | -0.00000000 | -0.00000000 | 0.00000000 | + | | | | | + | zdiplen (unrel) | 0.88533481 | 5.96438727 | -5.07905247 | + | zdiplen (relax) | 0.88126361 | 5.96031608 | -5.07905247 | + | | | | | + | xxqudlen (unrel) | -3.18196295 | -7.19850168 | 4.01653873 | + | xxqudlen (relax) | -3.21009242 | -7.22663115 | 4.01653873 | + | | | | | + | xyqudlen (unrel) | -0.00000000 | -0.00000000 | 0.00000000 | + | xyqudlen (relax) | -0.00000000 | -0.00000000 | 0.00000000 | + | | | | | + | xzqudlen (unrel) | 0.00000000 | 0.00000000 | 0.00000000 | + | xzqudlen (relax) | 0.00000000 | 0.00000000 | 0.00000000 | + | | | | | + | yyqudlen (unrel) | -5.32024241 | -5.32024241 | 0.00000000 | + | yyqudlen (relax) | -5.34280036 | -5.34280036 | 0.00000000 | + | | | | | + | yzqudlen (unrel) | 0.00000000 | 0.00000000 | 0.00000000 | + | yzqudlen (relax) | 0.00000000 | 0.00000000 | 0.00000000 | + | | | | | + | zzqudlen (unrel) | -5.41001427 | -9.88496486 | 4.47495059 | + | zzqudlen (relax) | -5.42570576 | -9.90065635 | 4.47495059 | + | | | | | + +===========================================================================+ + + + Analysis of relaxed properties: + =============================== + + + dipole moment: + -------------- + + x 0.00000000 + y -0.00000000 + z 0.88126361 + + | dipole moment | = 0.88126361 a.u. = 2.23994866 debye + + + traceless quadrupole tensor: + ---------------------------- + + x y z + + x 2.17416064 -0.00000000 0.00000000 + y -1.02490127 0.00000000 + z -1.14925938 + + + principal axes of tensor: + + x' = ( 1.0000000, 0.0000000, 0.0000000 ) + y' = ( 0.0000000, 1.0000000, 0.0000000 ) + z' = ( -0.0000000, 0.0000000, 1.0000000 ) + + < Q(x'x') > = 2.17416064 a.u. + < Q(y'y') > = -1.02490127 a.u. + < Q(z'z') > = -1.14925938 a.u. + + + second moment of electron density: + ---------------------------------- + + x y z + + x 7.22663115 0.00000000 -0.00000000 + y 5.34280036 -0.00000000 + z 9.90065635 + + + principal axes of tensor: + + x' = ( 1.0000000, 0.0000000, 0.0000000 ) + y' = ( 0.0000000, 1.0000000, 0.0000000 ) + z' = ( 0.0000000, 0.0000000, 1.0000000 ) + + < x'x'> = 7.22663115 a.u. + < y'y'> = 5.34280036 a.u. + < z'z'> = 9.90065635 a.u. + + Isotropic second moment: alpha = 7.49002929 a.u. + + Anisotropy of second moment: beta = 3.96694344 a.u. + + + -------------------------------------------------------------------------- + + + Analysis of unrelaxed properties: + ================================= + + + dipole moment: + -------------- + + x 0.00000000 + y -0.00000000 + z 0.88533481 + + | dipole moment | = 0.88533481 a.u. = 2.25029660 debye + + + traceless quadrupole tensor: + ---------------------------- + + x y z + + x 2.18316539 -0.00000000 0.00000000 + y -1.02425380 0.00000000 + z -1.15891159 + + + principal axes of tensor: + + x' = ( 1.0000000, 0.0000000, 0.0000000 ) + y' = ( 0.0000000, 1.0000000, 0.0000000 ) + z' = ( -0.0000000, 0.0000000, 1.0000000 ) + + < Q(x'x') > = 2.18316539 a.u. + < Q(y'y') > = -1.02425380 a.u. + < Q(z'z') > = -1.15891159 a.u. + + + second moment of electron density: + ---------------------------------- + + x y z + + x 7.19850168 0.00000000 -0.00000000 + y 5.32024241 -0.00000000 + z 9.88496486 + + + principal axes of tensor: + + x' = ( 1.0000000, 0.0000000, 0.0000000 ) + y' = ( 0.0000000, 1.0000000, 0.0000000 ) + z' = ( 0.0000000, 0.0000000, 1.0000000 ) + + < x'x'> = 7.19850168 a.u. + < y'y'> = 5.32024241 a.u. + < z'z'> = 9.88496486 a.u. + + Isotropic second moment: alpha = 7.46790298 a.u. + + Anisotropy of second moment: beta = 3.97376606 a.u. + + + ------------------------------ + total gradient of MP2 energy + ------------------------------ + + ------------------------------------------------ + cartesian gradient of the energy (hartree/bohr) + ------------------------------------------------ + + ATOM 1 o 2 h 3 h +dE/dx 0.0000000D+00 -0.2103091D-01 0.2103091D-01 +dE/dy 0.8110119D-13 -0.3793611D-13 -0.4316508D-13 +dE/dz 0.2753525D-01 -0.1376763D-01 -0.1376763D-01 + + resulting FORCE (fx,fy,fz) = (-.533D-14,-.252D-28,-.267D-12) + resulting MOMENT (mx,my,mz) = (0.883D-13,0.270D-13,0.741D-14) + + + ********************************************************************** + |maximum component of gradient| : 0.27535250E-01 (atom 1 o ) + gradient norm : 0.44965355E-01 + ********************************************************************** + + *** orbital-relaxed dipole moment written to *** + + + : data group $grad is missing + + *** cartesian gradients written onto *** + + ============================================================================== + + Exporting ground state density + + + ------------------------------------------------------------------------ + total cpu-time : 0.35 seconds + total wall-time : 3.41 seconds + ------------------------------------------------------------------------ + + **** ricc2 : all done **** + + + 2023-01-25 00:21:57.366 + diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/ridft/b28_many_irreps/ref_output.json b/turbomoleio/testfiles/outputs/TM_v7.6/ridft/b28_many_irreps/ref_output.json new file mode 100644 index 0000000..a11692e --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/ridft/b28_many_irreps/ref_output.json @@ -0,0 +1,666 @@ +{ + "@module": "turbomoleio.output.files", + "@class": "ScfOutput", + "@version": "1.3.0", + "dft": { + "@module": "turbomoleio.output.data", + "@class": "DFTData", + "@version": "1.3.0", + "functional": { + "@module": "turbomoleio.output.data", + "@class": "FunctionalData", + "@version": "1.3.0", + "msg": "B-P86 functional\n exchange: LDA + Becke (B88)\n correlation: LDA (VWN) + Perdew (P86)", + "name": "b-p", + "func_type": "GGA", + "xcfun": null + }, + "ri": { + "@module": "turbomoleio.output.data", + "@class": "RiData", + "@version": "1.3.0", + "ricore": 500, + "marij": false, + "rij_memory": 15, + "rik": false + }, + "spherical_gridsize": 3, + "gridpoints": 302, + "dispersion_correction": null + }, + "scf": { + "@module": "turbomoleio.output.data", + "@class": "ScfData", + "@version": "1.3.0", + "iterations": { + "@module": "turbomoleio.output.data", + "@class": "ScfIterationData", + "@version": "1.3.0", + "energies": [ + -690.81171680076, + -693.36290445796, + -694.31761760024, + -694.70646513457, + -694.84934704176, + -694.89089207283, + -694.89994244929, + -694.90163951348, + -694.901922537, + -694.9019721524, + -694.90198375437, + -694.90198805355, + -694.90198957418, + -694.90199021262, + -694.90199042488, + -694.901990499, + -694.90185728053 + ], + "first_index": 1, + "n_steps": 17, + "dampings": [ + 1.0, + 0.95, + 0.85, + 0.75, + 0.65, + 0.55, + 0.45, + 0.3, + 0.15, + 0.1, + 0.15, + 0.2, + 0.1, + 0.15, + 0.2, + 0.25, + 0.3 + ], + "converged": true + }, + "diis": true, + "diis_error_vect": "FDS-SDF", + "conv_tot_en": 1e-07, + "conv_one_e_en": 0.0001, + "virtual_orbital_shift_on": false, + "virtual_orbital_shift_limit": null, + "orbital_characterization": "expanded", + "restart_file": "alpha", + "n_occupied_orbitals": 71 + }, + "energies": { + "@module": "turbomoleio.output.data", + "@class": "ScfEnergiesData", + "@version": "1.3.0", + "total_energy": -694.90185728053, + "kinetic_energy": 684.60513479094, + "potential_energy": -1379.50699207147, + "virial_theorem": 1.98518247954, + "wavefunction_norm": 1.0, + "coulomb_energy": null, + "xc_energy": null, + "ts_energy": null, + "free_energy": null, + "sigma0_energy": null + }, + "electrostatic": { + "@module": "turbomoleio.output.data", + "@class": "ElectrostaticMomentsData", + "@version": "1.3.0", + "charge": 0.0, + "unrestricted_electrons": 2.0, + "dipole_vector": [ + -0.0, + 0.0, + -0.0 + ], + "dipole_norm": 0.0, + "quadrupole_tensor": [ + [ + -109.773433, + 0.0, + 0.0 + ], + [ + 0.0, + -109.773433, + -0.0 + ], + [ + 0.0, + -0.0, + -127.610081 + ] + ], + "quadrupole_trace": -347.156946, + "quadrupole_anisotropy": 17.836648 + }, + "geometry": { + "@module": "turbomoleio.output.data", + "@class": "GeometryData", + "@version": "1.3.0", + "center_of_mass": [ + 0.0, + 0.0, + 0.0 + ], + "center_of_charge": [ + 0.0, + 0.0, + 0.0 + ], + "molecule": { + "@module": "pymatgen.core.structure", + "@class": "Molecule", + "charge": 0.0, + "spin_multiplicity": 1, + "sites": [ + { + "name": "B", + "species": [ + { + "element": "B", + "occu": 1 + } + ], + "xyz": [ + -0.40817862437751534, + -3.6226854943626905, + 0.7626115293746029 + ], + "properties": {} + }, + { + "name": "B", + "species": [ + { + "element": "B", + "occu": 1 + } + ], + "xyz": [ + 1.2040680923806342, + -3.4410289169748, + 0.7626115293746029 + ], + "properties": {} + }, + { + "name": "B", + "species": [ + { + "element": "B", + "occu": 1 + } + ], + "xyz": [ + 2.57783435732768, + -2.57783435732768, + 0.7626115293746029 + ], + "properties": {} + }, + { + "name": "B", + "species": [ + { + "element": "B", + "occu": 1 + } + ], + "xyz": [ + 3.4410289169748, + -1.2040680923806342, + 0.7626115293746029 + ], + "properties": {} + }, + { + "name": "B", + "species": [ + { + "element": "B", + "occu": 1 + } + ], + "xyz": [ + 3.6226854943626905, + 0.40817862437751534, + 0.7626115293746029 + ], + "properties": {} + }, + { + "name": "B", + "species": [ + { + "element": "B", + "occu": 1 + } + ], + "xyz": [ + 3.086824780577758, + 1.9395805626203368, + 0.7626115293746029 + ], + "properties": {} + }, + { + "name": "B", + "species": [ + { + "element": "B", + "occu": 1 + } + ], + "xyz": [ + 1.9395805626203368, + 3.086824780577758, + 0.7626115293746029 + ], + "properties": {} + }, + { + "name": "B", + "species": [ + { + "element": "B", + "occu": 1 + } + ], + "xyz": [ + 0.40817862437751534, + 3.6226854943626905, + 0.7626115293746029 + ], + "properties": {} + }, + { + "name": "B", + "species": [ + { + "element": "B", + "occu": 1 + } + ], + "xyz": [ + -1.2040680923806342, + 3.4410289169748, + 0.7626115293746029 + ], + "properties": {} + }, + { + "name": "B", + "species": [ + { + "element": "B", + "occu": 1 + } + ], + "xyz": [ + -2.57783435732768, + 2.57783435732768, + 0.7626115293746029 + ], + "properties": {} + }, + { + "name": "B", + "species": [ + { + "element": "B", + "occu": 1 + } + ], + "xyz": [ + -3.4410289169748, + 1.2040680923806342, + 0.7626115293746029 + ], + "properties": {} + }, + { + "name": "B", + "species": [ + { + "element": "B", + "occu": 1 + } + ], + "xyz": [ + -3.6226854943626905, + -0.40817862437751534, + 0.7626115293746029 + ], + "properties": {} + }, + { + "name": "B", + "species": [ + { + "element": "B", + "occu": 1 + } + ], + "xyz": [ + -3.086824780577758, + -1.9395805626203368, + 0.7626115293746029 + ], + "properties": {} + }, + { + "name": "B", + "species": [ + { + "element": "B", + "occu": 1 + } + ], + "xyz": [ + -1.9395805626203368, + -3.086824780577758, + 0.7626115293746029 + ], + "properties": {} + }, + { + "name": "B", + "species": [ + { + "element": "B", + "occu": 1 + } + ], + "xyz": [ + -0.40817862437751534, + 3.6226854943626905, + -0.7626115293746029 + ], + "properties": {} + }, + { + "name": "B", + "species": [ + { + "element": "B", + "occu": 1 + } + ], + "xyz": [ + -1.9395805626203368, + 3.086824780577758, + -0.7626115293746029 + ], + "properties": {} + }, + { + "name": "B", + "species": [ + { + "element": "B", + "occu": 1 + } + ], + "xyz": [ + -3.086824780577758, + 1.9395805626203368, + -0.7626115293746029 + ], + "properties": {} + }, + { + "name": "B", + "species": [ + { + "element": "B", + "occu": 1 + } + ], + "xyz": [ + -3.6226854943626905, + 0.40817862437751534, + -0.7626115293746029 + ], + "properties": {} + }, + { + "name": "B", + "species": [ + { + "element": "B", + "occu": 1 + } + ], + "xyz": [ + -3.4410289169748, + -1.2040680923806342, + -0.7626115293746029 + ], + "properties": {} + }, + { + "name": "B", + "species": [ + { + "element": "B", + "occu": 1 + } + ], + "xyz": [ + -2.57783435732768, + -2.57783435732768, + -0.7626115293746029 + ], + "properties": {} + }, + { + "name": "B", + "species": [ + { + "element": "B", + "occu": 1 + } + ], + "xyz": [ + -1.2040680923806342, + -3.4410289169748, + -0.7626115293746029 + ], + "properties": {} + }, + { + "name": "B", + "species": [ + { + "element": "B", + "occu": 1 + } + ], + "xyz": [ + 0.40817862437751534, + -3.6226854943626905, + -0.7626115293746029 + ], + "properties": {} + }, + { + "name": "B", + "species": [ + { + "element": "B", + "occu": 1 + } + ], + "xyz": [ + 1.9395805626203368, + -3.086824780577758, + -0.7626115293746029 + ], + "properties": {} + }, + { + "name": "B", + "species": [ + { + "element": "B", + "occu": 1 + } + ], + "xyz": [ + 3.086824780577758, + -1.9395805626203368, + -0.7626115293746029 + ], + "properties": {} + }, + { + "name": "B", + "species": [ + { + "element": "B", + "occu": 1 + } + ], + "xyz": [ + 3.6226854943626905, + -0.40817862437751534, + -0.7626115293746029 + ], + "properties": {} + }, + { + "name": "B", + "species": [ + { + "element": "B", + "occu": 1 + } + ], + "xyz": [ + 3.4410289169748, + 1.2040680923806342, + -0.7626115293746029 + ], + "properties": {} + }, + { + "name": "B", + "species": [ + { + "element": "B", + "occu": 1 + } + ], + "xyz": [ + 2.57783435732768, + 2.57783435732768, + -0.7626115293746029 + ], + "properties": {} + }, + { + "name": "B", + "species": [ + { + "element": "B", + "occu": 1 + } + ], + "xyz": [ + 1.2040680923806342, + 3.4410289169748, + -0.7626115293746029 + ], + "properties": {} + } + ] + } + }, + "basis": { + "@module": "turbomoleio.output.data", + "@class": "BasisData", + "@version": "1.3.0", + "basis_per_specie": { + "b": "def-SV(P)" + }, + "aux_basis_per_specie": { + "b": "def-SV(P)" + }, + "number_scf_basis_func": 392, + "number_scf_aux_basis_func": 1036 + }, + "run": { + "@module": "turbomoleio.output.data", + "@class": "RunData", + "@version": "1.3.0", + "host": "frontal3", + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:22:00.159000" + }, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:22:04.897000" + }, + "cpu_time": 2.67, + "wall_time": 4.79 + }, + "tm": { + "@module": "turbomoleio.output.data", + "@class": "TurbomoleData", + "@version": "1.3.0", + "version": "7.6", + "build": null, + "executable": "ridft" + }, + "cosmo": null, + "spin": { + "@module": "turbomoleio.output.data", + "@class": "SpinData", + "@version": "1.3.0", + "unrestricted": true, + "s2": { + "s2": 2.00153224 + } + }, + "integral": { + "@module": "turbomoleio.output.data", + "@class": "IntegralData", + "@version": "1.3.0", + "integral_neglect_threshold": 7.9e-12, + "thize": 1e-05, + "thime": 5 + }, + "smearing": null, + "symmetry": { + "@module": "turbomoleio.output.data", + "@class": "SymmetryData", + "@version": "1.3.0", + "symbol": "d14d", + "n_reps": 17, + "reps": [ + "a1", + "a2", + "b1", + "b2", + "e1", + "e2", + "e3", + "e4", + "e5", + "e6", + "e7", + "e8", + "e9", + "e10", + "e11", + "e12", + "e13" + ] + }, + "periodicity": null +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/ridft/b28_many_irreps/ref_parser.json b/turbomoleio/testfiles/outputs/TM_v7.6/ridft/b28_many_irreps/ref_parser.json new file mode 100644 index 0000000..937a68c --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/ridft/b28_many_irreps/ref_parser.json @@ -0,0 +1,441 @@ +{ + "all_done": true, + "header": { + "executable": "ridft", + "host": "frontal3", + "tm_version": "7.6", + "tm_build": null, + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:22:00.159000" + } + }, + "centers": { + "center_of_mass": [ + 0.0, + 0.0, + 0.0 + ], + "center_of_charge": [ + 0.0, + 0.0, + 0.0 + ] + }, + "coordinates": { + "coords": [ + [ + -0.77134581, + -6.84588342, + 1.44112693 + ], + [ + 2.27535893, + -6.50260224, + 1.44112693 + ], + [ + 4.87140093, + -4.87140093, + 1.44112693 + ], + [ + 6.50260224, + -2.27535893, + 1.44112693 + ], + [ + 6.84588342, + 0.77134581, + 1.44112693 + ], + [ + 5.83325343, + 3.66527606, + 1.44112693 + ], + [ + 3.66527606, + 5.83325343, + 1.44112693 + ], + [ + 0.77134581, + 6.84588342, + 1.44112693 + ], + [ + -2.27535893, + 6.50260224, + 1.44112693 + ], + [ + -4.87140093, + 4.87140093, + 1.44112693 + ], + [ + -6.50260224, + 2.27535893, + 1.44112693 + ], + [ + -6.84588342, + -0.77134581, + 1.44112693 + ], + [ + -5.83325343, + -3.66527606, + 1.44112693 + ], + [ + -3.66527606, + -5.83325343, + 1.44112693 + ], + [ + -0.77134581, + 6.84588342, + -1.44112693 + ], + [ + -3.66527606, + 5.83325343, + -1.44112693 + ], + [ + -5.83325343, + 3.66527606, + -1.44112693 + ], + [ + -6.84588342, + 0.77134581, + -1.44112693 + ], + [ + -6.50260224, + -2.27535893, + -1.44112693 + ], + [ + -4.87140093, + -4.87140093, + -1.44112693 + ], + [ + -2.27535893, + -6.50260224, + -1.44112693 + ], + [ + 0.77134581, + -6.84588342, + -1.44112693 + ], + [ + 3.66527606, + -5.83325343, + -1.44112693 + ], + [ + 5.83325343, + -3.66527606, + -1.44112693 + ], + [ + 6.84588342, + -0.77134581, + -1.44112693 + ], + [ + 6.50260224, + 2.27535893, + -1.44112693 + ], + [ + 4.87140093, + 4.87140093, + -1.44112693 + ], + [ + 2.27535893, + 6.50260224, + -1.44112693 + ] + ], + "species": [ + "b", + "b", + "b", + "b", + "b", + "b", + "b", + "b", + "b", + "b", + "b", + "b", + "b", + "b", + "b", + "b", + "b", + "b", + "b", + "b", + "b", + "b", + "b", + "b", + "b", + "b", + "b", + "b" + ], + "charges": [ + 5.0, + 5.0, + 5.0, + 5.0, + 5.0, + 5.0, + 5.0, + 5.0, + 5.0, + 5.0, + 5.0, + 5.0, + 5.0, + 5.0, + 5.0, + 5.0, + 5.0, + 5.0, + 5.0, + 5.0, + 5.0, + 5.0, + 5.0, + 5.0, + 5.0, + 5.0, + 5.0, + 5.0 + ], + "isotopes": [ + 0, + 0, + 0, + 0, + 0, + 0, + 0, + 0, + 0, + 0, + 0, + 0, + 0, + 0, + 0, + 0, + 0, + 0, + 0, + 0, + 0, + 0, + 0, + 0, + 0, + 0, + 0, + 0 + ] + }, + "basis": { + "basis_per_specie": { + "b": "def-SV(P)" + }, + "aux_basis_per_specie": { + "b": "def-SV(P)" + }, + "number_scf_basis_func": 392, + "number_scf_aux_basis_func": 1036 + }, + "symmetry": { + "symbol": "d14d", + "n_reps": 17, + "reps": [ + "a1", + "a2", + "b1", + "b2", + "e1", + "e2", + "e3", + "e4", + "e5", + "e6", + "e7", + "e8", + "e9", + "e10", + "e11", + "e12", + "e13" + ] + }, + "cosmo_header": null, + "density_functional_data": { + "functional_msg": "B-P86 functional\n exchange: LDA + Becke (B88)\n correlation: LDA (VWN) + Perdew (P86)", + "functional_name": "b-p", + "functional_type": "GGA", + "xcfun": null, + "spherical_gridsize": 3, + "gridpoints": 302 + }, + "rij_info": { + "marij": false, + "rij_memory": 15, + "rik": false, + "ricore": 500 + }, + "dftd": null, + "pre_scf_run": { + "diis": true, + "diis_error_vect": "FDS-SDF", + "conv_tot_en": 1e-07, + "conv_one_e_en": 0.0001, + "virtual_orbital_shift_on": false, + "virtual_orbital_shift_limit": null, + "orbital_characterization": "expanded", + "restart_file": "alpha", + "n_occupied_orbitals": 71 + }, + "scf_iterations": { + "energies": [ + -690.81171680076, + -693.36290445796, + -694.31761760024, + -694.70646513457, + -694.84934704176, + -694.89089207283, + -694.89994244929, + -694.90163951348, + -694.901922537, + -694.9019721524, + -694.90198375437, + -694.90198805355, + -694.90198957418, + -694.90199021262, + -694.90199042488, + -694.901990499, + -694.90185728053 + ], + "first_index": 1, + "n_steps": 17, + "dampings": [ + 1.0, + 0.95, + 0.85, + 0.75, + 0.65, + 0.55, + 0.45, + 0.3, + 0.15, + 0.1, + 0.15, + 0.2, + 0.1, + 0.15, + 0.2, + 0.25, + 0.3 + ], + "converged": true + }, + "scf_energies": { + "total_energy": -694.90185728053, + "kinetic_energy": 684.60513479094, + "potential_energy": -1379.50699207147, + "virial_theorem": 1.98518247954, + "wavefunction_norm": 1.0 + }, + "cosmo_results": null, + "electrostatic_moments": { + "unrestricted_electrons": 2.0, + "charge": 0.0, + "dipole": { + "norm": 0.0, + "moment": [ + -0.0, + 0.0, + -0.0 + ] + }, + "quadrupole": { + "trace": -347.156946, + "anisotropy": 17.836648, + "moment": [ + [ + -109.773433, + 0.0, + 0.0 + ], + [ + 0.0, + -109.773433, + -0.0 + ], + [ + 0.0, + -0.0, + -127.610081 + ] + ] + } + }, + "timings": { + "cpu_time": 2.67, + "wall_time": 4.79, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:22:04.897000" + } + }, + "s2": { + "s2": 2.00153224 + }, + "is_uhf": true, + "fermi": null, + "integral": { + "integral_neglect_threshold": 7.9e-12, + "thize": 1e-05, + "thime": 5 + }, + "pre_escf_run": null, + "escf_iterations": null, + "escf_gs_total_en": null, + "escf_excitations": null, + "rdgrad_memory": null, + "gradient": null, + "egrad_excited_state": null, + "statpt_info": null, + "relax_info": null, + "relax_gradient_values": null, + "relax_conv_info": null, + "aoforce_numerical_integration": null, + "aoforce_analysis": null, + "mp2_results": { + "energy": null + }, + "riper_scf_energies": null, + "periodicity_data": null +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/ridft/b28_many_irreps/ridft.log b/turbomoleio/testfiles/outputs/TM_v7.6/ridft/b28_many_irreps/ridft.log new file mode 100644 index 0000000..e41a3d4 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/ridft/b28_many_irreps/ridft.log @@ -0,0 +1,971 @@ + + ridft (frontal3) : TURBOMOLE rev. V7-6 19 Oct 2021 at 10:10:11 compiled Oct 19th 2021 + Copyright (C) 2021 TURBOMOLE GmbH, Karlsruhe + + + 2023-01-25 00:22:00.159 + + + + r i d f t + + DFT program with RI approximation + for coulomb part + + + + + + References: + + TURBOMOLE: + R. Ahlrichs, M. Baer, M. Haeser, H. Horn, and + C. Koelmel + Electronic structure calculations on workstation + computers: the program system TURBOMOLE + Chem. Phys. Lett. 162: 165 (1989) + Density Functional: + O. Treutler and R. Ahlrichs + Efficient Molecular Numerical Integration Schemes + J. Chem. Phys. 102: 346 (1995) + Parallel Version: + Performance of parallel TURBOMOLE for Density + Functional Calculations + M. v. Arnim and R. Ahlrichs + J. Comp. Chem. 19: 1746 (1998) + RI-J Method: + Auxiliary Basis Sets to approximate Coulomb + Potentials + Chem. Phys. Lett. 240: 283 (1995) + K. Eichkorn, O. Treutler, H. Oehm, M. Haeser + and R. Ahlrichs + Chem. Phys. Lett. 242: 652 (1995) + + Auxiliary Basis Sets for Main Row Atoms and their + Use to approximate Coulomb Potentials + K. Eichkorn, F. Weigend, O. Treutler and + R. Ahlrichs + Theo. Chem. Acc. 97: 119 (1997) + + Accurate Coulomb-fitting basis sets for H to Rn + F. Weigend + Phys. Chem. Chem. Phys. 8: 1057 (2006) + + Multipole accelerated RI-J (MARI-J): + Fast evaluation of the Coulomb potential for + electron densities using multipole accelerated + resolution of identity approximation + M. Sierka, A. Hogekamp and R. Ahlrichs + J. Chem. Phys. 118: 9136 (2003) + RI-JK Method: + A fully direct RI-HF algorithm: Implementation, + optimised auxiliary basis sets, demonstration of + accuracy and efficiency + F. Weigend + Phys. Chem. Chem. Phys. 4: 4285 (2002) + Two-component HF and DFT with spin-orbit coupling: + Self-consistent treatment of spin-orbit + interactions with efficient Hartree-Fock and + density functional methods + M. K. Armbruster, F. Weigend, C. van Wüllen and + W. Klopper + Phys. Chem. Chem. Phys. 10: 1748 (2008) + Two-component difference density and DIIS algorithm + Efficient two-component self-consistent field + procedures and gradients: implementation in + TURBOMOLE and application to Au20- + A. Baldes, F. Weigend + Mol. Phys. 111: 2617 (2013) + Relativistic all-electron 2c calculations + An efficient implementation of two-component + relativistic exact-decoupling methods for large + molecules + D. Peng, N. Middendorf, F. Weigend, M. Reiher + J. Chem. Phys. 138: 184105 (2013) + Finite nucleus model and SNSO approximation + Efficient implementation of one- and two- + component analytical energy gradients in exact + two-component theory + Y. J. Franzke, N. Middendorf, F. Weigend + J. Chem. Phys. 148: 104110 (2018) + Grids for all-electron relativistic methods + Error-consistent segmented contracted all- + electron relativistic basis sets of double- + and triple-zeta quality for NMR shielding + constants + Y. J. Franzke, R. Tress, T. M. Pazdera, + F. Weigend + Phys. Chem. Chem. Phys. 21: 166658 (2019) + Seminumerical exchange algorithms + Seminumerical calculation of the Hartree-Fock + exchange matirx: Application to two-component + procedures and efficient evaluation of local + hybrid functionsl + P. Plessow, F. Weigend, + J. Comput. Chem. 33: 810 (2012) + Improved seminumerical algorithms + C. Holzer, + J. Chem. Phys. 153 (2020), 184115 + + + + + + +--------------------------------------------------+ + | general information about current run | + +--------------------------------------------------+ + + + B-P86 functional + exchange: LDA + Becke (B88) + correlation: LDA (VWN) + Perdew (P86) + A DFT calculation using the RI-J approximation will be carried out. + Allocatable memory for RI due to $ricore (MB): 500 + + ************************************************************************* + ridft + ************************************************************************* + + + + + +--------------------------------------------------+ + | Atomic coordinate, charge and isotop information | + +--------------------------------------------------+ + + atomic coordinates atom charge isotop + -0.77134581 -6.84588342 1.44112693 b 5.000 0 + 2.27535893 -6.50260224 1.44112693 b 5.000 0 + 4.87140093 -4.87140093 1.44112693 b 5.000 0 + 6.50260224 -2.27535893 1.44112693 b 5.000 0 + 6.84588342 0.77134581 1.44112693 b 5.000 0 + 5.83325343 3.66527606 1.44112693 b 5.000 0 + 3.66527606 5.83325343 1.44112693 b 5.000 0 + 0.77134581 6.84588342 1.44112693 b 5.000 0 + -2.27535893 6.50260224 1.44112693 b 5.000 0 + -4.87140093 4.87140093 1.44112693 b 5.000 0 + -6.50260224 2.27535893 1.44112693 b 5.000 0 + -6.84588342 -0.77134581 1.44112693 b 5.000 0 + -5.83325343 -3.66527606 1.44112693 b 5.000 0 + -3.66527606 -5.83325343 1.44112693 b 5.000 0 + -0.77134581 6.84588342 -1.44112693 b 5.000 0 + -3.66527606 5.83325343 -1.44112693 b 5.000 0 + -5.83325343 3.66527606 -1.44112693 b 5.000 0 + -6.84588342 0.77134581 -1.44112693 b 5.000 0 + -6.50260224 -2.27535893 -1.44112693 b 5.000 0 + -4.87140093 -4.87140093 -1.44112693 b 5.000 0 + -2.27535893 -6.50260224 -1.44112693 b 5.000 0 + 0.77134581 -6.84588342 -1.44112693 b 5.000 0 + 3.66527606 -5.83325343 -1.44112693 b 5.000 0 + 5.83325343 -3.66527606 -1.44112693 b 5.000 0 + 6.84588342 -0.77134581 -1.44112693 b 5.000 0 + 6.50260224 2.27535893 -1.44112693 b 5.000 0 + 4.87140093 4.87140093 -1.44112693 b 5.000 0 + 2.27535893 6.50260224 -1.44112693 b 5.000 0 + + center of nuclear mass : 0.00000000 0.00000000 0.00000000 + center of nuclear charge: 0.00000000 0.00000000 0.00000000 + + +--------------------------------------------------+ + | basis set information | + +--------------------------------------------------+ + + we will work with the 1s 3p 5d 7f 9g ... basis set + ...i.e. with spherical basis functions... + + type atoms prim cont basis + --------------------------------------------------------------------------- + b 28 24 14 def-SV(P) [3s2p1d|7s4p1d] + --------------------------------------------------------------------------- + total: 28 672 392 + --------------------------------------------------------------------------- + + total number of primitive shells : 12 + total number of contracted shells : 168 + total number of cartesian basis functions : 420 + total number of SCF-basis functions : 392 + + + integral neglect threshold : 0.79E-11 + integral storage threshold THIZE : 0.10E-04 + integral storage threshold THIME : 5 + + RI-J AUXILIARY BASIS SET information: + + we will work with the 1s 3p 5d 7f 9g ... basis set + ...i.e. with spherical basis functions... + + type atoms prim cont basis + --------------------------------------------------------------------------- + b 28 39 37 def-SV(P) [6s3p3d1f|8s3p3d1f] + --------------------------------------------------------------------------- + total: 28 1092 1036 + --------------------------------------------------------------------------- + + total number of primitive shells : 15 + total number of contracted shells : 364 + total number of cartesian basis functions : 1204 + total number of SCF-basis functions : 1036 + + + symmetry group of the molecule : d14d + + the group has the following generators : + s28(z) + c2(x) + + 56 symmetry operations found + + there are 17 real representations : + a1 a2 b1 b2 e1 e2 e3 e4 e5 e6 e7 e8 e9 e10 e11 + e12 e13 + + maximum number of shells which are related by symmetry : 28 + + + ------------------ + density functional + ------------------ + B-P86 functional + exchange: LDA + Becke (B88) + correlation: LDA (VWN) + Perdew (P86) + + iterations will be done with small grid + + spherical integration : Lebedev's spherical grid + spherical gridsize : 3 + i.e. gridpoints : 302 + value for diffuse not defined + radial integration : Chebyshev 2nd kind (scaling 3) + radial gridsize : 3 + integration cells : 1 + partition function : becke + partition sharpness : 3 + + + biggest AO integral is expected to be 2.904162095 + + ------------------------ + nuclear repulsion energy : 1288.43517816 + ------------------------ + + + ----------------- + -S,T+V- integrals + ----------------- + + 1e-integrals will be neglected if expon. factor < 0.795705E-12 + + Difference densities algorithm switched on. + The maximal number of linear combinations of + difference densities is 20 . + + DIIS switched on: error vector is FDS-SDF + Max. Iterations for DIIS is : 4 + DIIS matrix (see manual) + Scaling factor of diagonals : 1.200 + threshold for scaling factor : 0.000 + + scf convergence criterion : increment of total energy < .1000000D-06 + and increment of one-electron energy < .1000000D-03 + + MOs are in ASCII format ! + + + mo occupation : + irrep mo's occupied + a1 10 4 + a2 4 0 + b1 4 0 + b2 10 3 + e1 14 4 + e2 14 4 + e3 14 4 + e4 14 2 + e5 14 2 + e6 14 2 + e7 14 2 + e8 14 2 + e9 14 2 + e10 14 2 + e11 14 2 + e12 14 2 + e13 14 2 + + number of basis functions : 392 + number of occupied orbitals : 71 + + + reading orbital data $uhfmo_alpha from file alpha + orbital characterization : expanded + + reading orbital data $uhfmo_beta from file beta + orbital characterization : expanded + virtual MOs provided and orthogonalized by Cholesky decomposition + virtual MOs provided and orthogonalized by Cholesky decomposition + + UHF mode switched on ! + + closed shell shift switched on + all occupied orbitals are shifted by 0.05000 + + + ------------------------ + RI-J - INFORMATION + ------------------------ + Contributions to RI integral batches: + neglected integral batches: 13946 + direct contribution: 0 + memory contribution: 250 + Memory core needed for (P|Q) and Cholesky 1 MByte + Memory core minimum needed except of (P|Q) 1 MByte + Total minimum memory core needed (sum) 1 MByte + + **************************************** + Memory allocated for RI-J 15 MByte + **************************************** + + + DSCF restart information will be dumped onto file alpha + + + Starting SCF iterations + + Overall gridpoints after grid construction = 1717 + + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 1 -690.81171680076 -3431.9679938 1452.7210988 0.000D+00 0.794D-11 + Exc = -110.290402715 Coul = 1563.01150156 + Ntotal = 140.00340960 Nspin = 1.9999880136 + Na = 71.001698809 Nb = 69.001710795 + current damping = 1.000 + + max. resid. norm for Fia-block= 3.185D-01 for orbital 2e4 alpha + max. resid. fock norm = 9.653D-01 for orbital 10e7 beta + + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 2 -693.36290445796 -3455.1937172 1473.3956345 0.379D+01 0.495D-11 + Exc = -111.562613193 Coul = 1584.95824774 + Ntotal = 140.00331481 Nspin = 1.9999700781 + Na = 71.001642443 Nb = 69.001672365 + current damping = 0.950 + + Norm of current diis error: 2.8592 + max. resid. norm for Fia-block= 1.762D-01 for orbital 2e2 alpha + max. resid. fock norm = 1.936D-01 for orbital 8e2 alpha + + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 3 -694.31761760024 -3467.6251494 1484.8723537 0.963D+00 0.368D-11 + Exc = -112.376875438 Coul = 1597.24922909 + Ntotal = 140.00313289 Nspin = 1.9999646478 + Na = 71.001548769 Nb = 69.001584121 + current damping = 0.850 + + Norm of current diis error: 1.6517 + max. resid. norm for Fia-block= 1.033D-01 for orbital 2e4 beta + max. resid. fock norm = 1.109D-01 for orbital 8e2 alpha + + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 4 -694.70646513457 -3474.9385467 1491.7969034 0.486D+00 0.335D-11 + Exc = -112.882399094 Coul = 1604.67930246 + Ntotal = 140.00298448 Nspin = 1.9999566587 + Na = 71.001470570 Nb = 69.001513911 + current damping = 0.750 + + Norm of current diis error: 0.90403 + max. resid. norm for Fia-block= 6.001D-02 for orbital 2e4 beta + max. resid. fock norm = 6.216D-02 for orbital 2e4 beta + + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 5 -694.84934704176 -3479.3981423 1496.1136171 0.105D+00 0.307D-11 + Exc = -113.182355306 Coul = 1609.29597239 + Ntotal = 140.00288776 Nspin = 1.9999492051 + Na = 71.001418480 Nb = 69.001469275 + current damping = 0.650 + + Norm of current diis error: 0.44360 + max. resid. norm for Fia-block= 3.142D-02 for orbital 2e4 beta + max. resid. fock norm = 3.226D-02 for orbital 2e4 beta + mo-orthogonalization: Cholesky decomposition + + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 6 -694.89089207283 -3481.7993757 1498.4733054 0.379D-01 0.273D-11 + Exc = -113.343773629 Coul = 1611.81707904 + Ntotal = 140.00283132 Nspin = 1.9999430288 + Na = 71.001387174 Nb = 69.001444145 + current damping = 0.550 + + Norm of current diis error: 0.19033 + max. resid. norm for Fia-block= 1.427D-02 for orbital 2e4 beta + max. resid. fock norm = 1.456D-02 for orbital 2e4 beta + + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 7 -694.89994244929 -3482.8042590 1499.4691384 0.197D-01 0.250D-11 + Exc = -113.414504912 Coul = 1612.88364331 + Ntotal = 140.00280299 Nspin = 1.9999384713 + Na = 71.001370732 Nb = 69.001432261 + current damping = 0.450 + + Norm of current diis error: 0.76202E-01 + max. resid. norm for Fia-block= 5.939D-03 for orbital 2e4 beta + max. resid. fock norm = 6.027D-03 for orbital 2e4 beta + + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 8 -694.90163951348 -3483.2337254 1499.8969077 0.858D-02 0.238D-11 + Exc = -113.443368666 Coul = 1613.34027640 + Ntotal = 140.00279223 Nspin = 1.9999353077 + Na = 71.001363766 Nb = 69.001428459 + current damping = 0.300 + + Norm of current diis error: 0.27256E-01 + max. resid. norm for Fia-block= 2.177D-03 for orbital 2e4 alpha + max. resid. fock norm = 2.200D-03 for orbital 2e4 alpha + + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 9 -694.90192253700 -3483.3719771 1500.0348764 0.500D-02 0.230D-11 + Exc = -113.453757463 Coul = 1613.48863386 + Ntotal = 140.00278807 Nspin = 1.9999330258 + Na = 71.001360547 Nb = 69.001427522 + current damping = 0.150 + + Norm of current diis error: 0.87829E-02 + max. resid. norm for Fia-block= 9.265D-04 for orbital 3e3 beta + max. resid. fock norm = 9.332D-04 for orbital 4e3 beta + + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 10 -694.90197215240 -3483.4341009 1500.0969506 0.251D-02 0.225D-11 + Exc = -113.457331500 Coul = 1613.55428210 + Ntotal = 140.00278810 Nspin = 1.9999314547 + Na = 71.001359775 Nb = 69.001428320 + current damping = 0.100 + + Norm of current diis error: 0.28983E-02 + max. resid. norm for Fia-block= 6.014D-04 for orbital 3e3 beta + max. resid. fock norm = 6.101D-04 for orbital 3e3 beta + mo-orthogonalization: Cholesky decomposition + + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 11 -694.90198375437 -3483.4190366 1500.0818747 0.653D-03 0.220D-11 + Exc = -113.457472727 Coul = 1613.53934743 + Ntotal = 140.00278809 Nspin = 1.9999304779 + Na = 71.001359286 Nb = 69.001428808 + current damping = 0.150 + + Norm of current diis error: 0.23042E-02 + max. resid. norm for Fia-block= 3.439D-04 for orbital 3e3 beta + max. resid. fock norm = 3.480D-04 for orbital 3e3 beta + + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 12 -694.90198805355 -3483.4284231 1500.0912569 0.133D-03 0.216D-11 + Exc = -113.457751956 Coul = 1613.54900883 + Ntotal = 140.00278886 Nspin = 1.9999299342 + Na = 71.001359397 Nb = 69.001429462 + current damping = 0.200 + + Norm of current diis error: 0.87028E-03 + max. resid. norm for Fia-block= 2.228D-04 for orbital 3e3 beta + max. resid. fock norm = 2.230D-04 for orbital 4e3 beta + + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 13 -694.90198957418 -3483.4285390 1500.0913713 0.669D-03 0.205D-11 + Exc = -113.457805437 Coul = 1613.54917672 + Ntotal = 140.00278925 Nspin = 1.9999295585 + Na = 71.001359404 Nb = 69.001429846 + current damping = 0.100 + + Norm of current diis error: 0.47837E-03 + max. resid. norm for Fia-block= 1.444D-04 for orbital 3e3 beta + max. resid. fock norm = 1.445D-04 for orbital 4e3 beta + + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 14 -694.90199021262 -3483.4270637 1500.0898953 0.173D-01 0.226D-11 + Exc = -113.457793630 Coul = 1613.54768897 + Ntotal = 140.00278949 Nspin = 1.9999292999 + Na = 71.001359394 Nb = 69.001430094 + current damping = 0.150 + + Norm of current diis error: 0.28066E-03 + max. resid. norm for Fia-block= 8.519D-05 for orbital 3e3 beta + max. resid. fock norm = 8.526D-05 for orbital 4e3 beta + + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 15 -694.90199042488 -3483.4275977 1500.0904291 0.123D-03 0.226D-11 + Exc = -113.457860417 Coul = 1613.54828957 + Ntotal = 140.00278961 Nspin = 1.9999291641 + Na = 71.001359388 Nb = 69.001430224 + current damping = 0.200 + + Norm of current diis error: 0.16775E-03 + max. resid. norm for Fia-block= 5.151D-05 for orbital 3e3 beta + max. resid. fock norm = 5.155D-05 for orbital 4e3 beta + mo-orthogonalization: Cholesky decomposition + + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 16 -694.90199049900 -3483.4269355 1500.0897669 0.800D-04 0.226D-11 + Exc = -113.457828738 Coul = 1613.54759561 + Ntotal = 140.00278970 Nspin = 1.9999290909 + Na = 71.001359397 Nb = 69.001430306 + current damping = 0.250 + + Norm of current diis error: 0.10713E-03 + max. resid. norm for Fia-block= 3.223D-05 for orbital 3e3 beta + max. resid. fock norm = 3.231D-05 for orbital 4e3 beta + + ENERGY CONVERGED ! + + Overall gridpoints after grid construction = 5890 + + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 17 -694.90185728053 -3483.4268230 1500.0897876 0.888D-04 0.226D-11 + Exc = -113.457710364 Coul = 1613.54749794 + Ntotal = 140.00025942 Nspin = 2.0000002011 + Na = 71.000129808 Nb = 69.000129607 + current damping = 0.300 + + Norm of current diis error: 0.68215E-04 + max. resid. norm for Fia-block= 2.017D-05 for orbital 3e3 beta + max. resid. fock norm = 2.018D-05 for orbital 3e3 beta + + End of SCF iterations + + convergence criteria satisfied after 17 iterations + + + ************************************************************************* + ridft + ************************************************************************* + + + ------------------------------------------ + | total energy = -694.90185728053 | + ------------------------------------------ + : kinetic energy = 684.60513479094 : + : potential energy = -1379.50699207147 : + : virial theorem = 1.98518247954 : + : wavefunction norm = 1.00000000000 : + .......................................... + + + : there is no data group $energy + + + : $end is missing + + + orbitals $uhfmo_beta will be written to file beta + + orbitals $uhfmo_alpha will be written to file alpha + + alpha: + + irrep 1a1 2a1 3a1 4a1 5a1 + eigenvalues H -6.57222 -0.68287 -0.34356 -0.30126 0.08057 + eV -178.8407 -18.5821 -9.3489 -8.1977 2.1925 + occupation 1.0000 1.0000 1.0000 1.0000 + + irrep 6a1 7a1 8a1 9a1 10a1 + eigenvalues H 0.17746 0.19462 0.67093 1.08868 1.26343 + eV 4.8291 5.2959 18.2570 29.6246 34.3800 + + irrep 1a2 2a2 3a2 4a2 + eigenvalues H 0.75820 1.03954 2.16256 2.38227 + eV 20.6319 28.2875 58.8466 64.8254 + + irrep 1b1 2b1 3b1 4b1 + eigenvalues H 0.60640 0.93002 1.83105 1.99912 + eV 16.5012 25.3075 49.8259 54.3992 + + irrep 1b2 2b2 3b2 4b2 5b2 + eigenvalues H -6.57177 -0.42370 -0.14991 0.07815 0.19625 + eV -178.8283 -11.5294 -4.0792 2.1267 5.3402 + occupation 1.0000 1.0000 1.0000 + + irrep 6b2 7b2 8b2 9b2 10b2 + eigenvalues H 0.26168 0.41428 1.06569 1.32877 1.48732 + eV 7.1208 11.2731 28.9990 36.1581 40.4723 + + irrep 1e1 2e1 3e1 4e1 5e1 + eigenvalues H -6.57247 -0.67455 -0.33084 -0.29086 0.05734 + eV -178.8474 -18.3555 -9.0028 -7.9147 1.5602 + occupation 2 * 1.0000 2 * 1.0000 2 * 1.0000 2 * 1.0000 + + irrep 6e1 7e1 8e1 9e1 10e1 + eigenvalues H 0.18273 0.22351 0.51315 0.68439 0.72619 + eV 4.9724 6.0822 13.9636 18.6232 19.7608 + + irrep 1e2 2e2 3e2 4e2 5e2 + eigenvalues H -6.57230 -0.65022 -0.29540 -0.25955 0.09059 + eV -178.8427 -17.6935 -8.0382 -7.0627 2.4650 + occupation 2 * 1.0000 2 * 1.0000 2 * 1.0000 2 * 1.0000 + + irrep 6e2 7e2 8e2 9e2 10e2 + eigenvalues H 0.22169 0.30493 0.54569 0.63973 0.73470 + eV 6.0324 8.2977 14.8491 17.4080 19.9924 + + irrep 1e3 2e3 3e3 4e3 5e3 + eigenvalues H -6.57202 -0.61193 -0.24116 -0.20693 0.12766 + eV -178.8353 -16.6515 -6.5624 -5.6310 3.4738 + occupation 2 * 1.0000 2 * 1.0000 2 * 1.0000 2 * 1.0000 + + irrep 6e3 7e3 8e3 9e3 10e3 + eigenvalues H 0.27528 0.37502 0.55948 0.60833 0.80530 + eV 7.4908 10.2049 15.2244 16.5537 21.9135 + + irrep 1e4 2e4 3e4 4e4 5e4 + eigenvalues H -6.57173 -0.56231 -0.17250 -0.13392 0.18011 + eV -178.8272 -15.3012 -4.6940 -3.6442 4.9011 + occupation 2 * 1.0000 2 * 1.0000 + + irrep 6e4 7e4 8e4 9e4 10e4 + eigenvalues H 0.32301 0.35248 0.57487 0.68668 0.89878 + eV 8.7897 9.5915 15.6432 18.6857 24.4573 + + irrep 1e5 2e5 3e5 4e5 5e5 + eigenvalues H -6.57151 -0.50432 -0.09515 -0.04566 0.21473 + eV -178.8213 -13.7234 -2.5892 -1.2424 5.8430 + occupation 2 * 1.0000 2 * 1.0000 + + irrep 6e5 7e5 8e5 9e5 10e5 + eigenvalues H 0.29658 0.40276 0.54083 0.81612 0.97160 + eV 8.0704 10.9596 14.7170 22.2078 26.4387 + + irrep 1e6 2e6 3e6 4e6 5e6 + eigenvalues H -6.57139 -0.44164 -0.02868 0.05078 0.19412 + eV -178.8181 -12.0178 -0.7805 1.3818 5.2824 + occupation 2 * 1.0000 2 * 1.0000 + + irrep 6e6 7e6 8e6 9e6 10e6 + eigenvalues H 0.33902 0.45859 0.49114 0.89434 0.95127 + eV 9.2254 12.4790 13.3648 24.3365 25.8855 + + irrep 1e7 2e7 3e7 4e7 5e7 + eigenvalues H -6.57130 -0.38000 -0.01287 0.15536 0.22161 + eV -178.8157 -10.3404 -0.3501 4.2275 6.0304 + occupation 2 * 1.0000 2 * 1.0000 + + irrep 6e7 7e7 8e7 9e7 10e7 + eigenvalues H 0.37233 0.43219 0.53176 0.76678 1.00606 + eV 10.1318 11.7607 14.4701 20.8654 27.3766 + + irrep 1e8 2e8 3e8 4e8 5e8 + eigenvalues H -6.57126 -0.33234 -0.02412 0.23964 0.27258 + eV -178.8144 -9.0436 -0.6562 6.5209 7.4174 + occupation 2 * 1.0000 2 * 1.0000 + + irrep 6e8 7e8 8e8 9e8 10e8 + eigenvalues H 0.31200 0.42880 0.59291 0.62944 0.92388 + eV 8.4899 11.6682 16.1341 17.1281 25.1401 + + irrep 1e9 2e9 3e9 4e9 5e9 + eigenvalues H -6.57133 -0.31645 -0.01770 0.17338 0.27867 + eV -178.8163 -8.6112 -0.4815 4.7180 7.5831 + occupation 2 * 1.0000 2 * 1.0000 + + irrep 6e9 7e9 8e9 9e9 10e9 + eigenvalues H 0.38059 0.43757 0.51126 0.75484 0.98840 + eV 10.3564 11.9069 13.9123 20.5404 26.8961 + + irrep 1e10 2e10 3e10 4e10 5e10 + eigenvalues H -6.57145 -0.33279 -0.01418 0.12437 0.27232 + eV -178.8197 -9.0556 -0.3859 3.3842 7.4103 + occupation 2 * 1.0000 2 * 1.0000 + + irrep 6e10 7e10 8e10 9e10 10e10 + eigenvalues H 0.34414 0.46691 0.52758 0.70882 1.02765 + eV 9.3647 12.7054 14.3562 19.2882 27.9639 + + irrep 1e11 2e11 3e11 4e11 5e11 + eigenvalues H -6.57161 -0.36366 -0.05588 0.11661 0.27939 + eV -178.8240 -9.8957 -1.5206 3.1731 7.6028 + occupation 2 * 1.0000 2 * 1.0000 + + irrep 6e11 7e11 8e11 9e11 10e11 + eigenvalues H 0.30268 0.44523 0.57300 0.61440 1.14260 + eV 8.2364 12.1155 15.5922 16.7188 31.0918 + + irrep 1e12 2e12 3e12 4e12 5e12 + eigenvalues H -6.57181 -0.39421 -0.10433 0.09532 0.22881 + eV -178.8293 -10.7271 -2.8389 2.5938 6.2263 + occupation 2 * 1.0000 2 * 1.0000 + + irrep 6e12 7e12 8e12 9e12 10e12 + eigenvalues H 0.34604 0.40253 0.50863 0.65057 1.26748 + eV 9.4164 10.9535 13.8405 17.7031 34.4901 + + irrep 1e13 2e13 3e13 4e13 5e13 + eigenvalues H -6.57194 -0.41587 -0.13765 0.07100 0.19337 + eV -178.8331 -11.3165 -3.7457 1.9320 5.2619 + occupation 2 * 1.0000 2 * 1.0000 + + irrep 6e13 7e13 8e13 9e13 10e13 + eigenvalues H 0.28745 0.39752 0.56624 0.64189 1.17740 + eV 7.8219 10.8173 15.4084 17.4668 32.0390 + + beta: + + irrep 1a1 2a1 3a1 4a1 5a1 + eigenvalues H -6.57137 -0.67997 -0.34152 -0.29199 0.08197 + eV -178.8175 -18.5031 -9.2933 -7.9456 2.2306 + occupation 1.0000 1.0000 1.0000 1.0000 + + irrep 6a1 7a1 8a1 9a1 10a1 + eigenvalues H 0.18285 0.19548 0.67707 1.09145 1.26906 + eV 4.9757 5.3194 18.4241 29.7001 34.5330 + + irrep 1a2 2a2 3a2 4a2 + eigenvalues H 0.75995 1.04002 2.16346 2.39061 + eV 20.6796 28.3006 58.8713 65.0523 + + irrep 1b1 2b1 3b1 4b1 + eigenvalues H 0.60802 0.93013 1.83922 2.00014 + eV 16.5453 25.3104 50.0482 54.4271 + + irrep 1b2 2b2 3b2 4b2 5b2 + eigenvalues H -6.57092 -0.41671 -0.14747 0.08265 0.19865 + eV -178.8051 -11.3394 -4.0129 2.2490 5.4056 + occupation 1.0000 1.0000 1.0000 + + irrep 6b2 7b2 8b2 9b2 10b2 + eigenvalues H 0.26308 0.42052 1.06783 1.33473 1.49529 + eV 7.1589 11.4430 29.0573 36.3202 40.6893 + + irrep 1e1 2e1 3e1 4e1 5e1 + eigenvalues H -6.57161 -0.67165 -0.32895 -0.28139 0.05844 + eV -178.8241 -18.2765 -8.9514 -7.6572 1.5901 + occupation 2 * 1.0000 2 * 1.0000 2 * 1.0000 2 * 1.0000 + + irrep 6e1 7e1 8e1 9e1 10e1 + eigenvalues H 0.18680 0.22493 0.51545 0.69013 0.72907 + eV 5.0832 6.1206 14.0262 18.7796 19.8391 + + irrep 1e2 2e2 3e2 4e2 5e2 + eigenvalues H -6.57144 -0.64732 -0.29387 -0.24968 0.09148 + eV -178.8194 -17.6147 -7.9968 -6.7942 2.4893 + occupation 2 * 1.0000 2 * 1.0000 2 * 1.0000 2 * 1.0000 + + irrep 6e2 7e2 8e2 9e2 10e2 + eigenvalues H 0.22601 0.30668 0.54723 0.64322 0.74105 + eV 6.1500 8.3453 14.8909 17.5032 20.1652 + + irrep 1e3 2e3 3e3 4e3 5e3 + eigenvalues H -6.57117 -0.60907 -0.23988 -0.19683 0.12839 + eV -178.8119 -16.5738 -6.5276 -5.3560 3.4937 + occupation 2 * 1.0000 2 * 1.0000 2 * 1.0000 + + irrep 6e3 7e3 8e3 9e3 10e3 + eigenvalues H 0.28003 0.37672 0.56338 0.60995 0.81180 + eV 7.6199 10.2511 15.3304 16.5978 22.0903 + + irrep 1e4 2e4 3e4 4e4 5e4 + eigenvalues H -6.57087 -0.55954 -0.17103 -0.12408 0.18088 + eV -178.8039 -15.2260 -4.6541 -3.3765 4.9220 + occupation 2 * 1.0000 2 * 1.0000 + + irrep 6e4 7e4 8e4 9e4 10e4 + eigenvalues H 0.32692 0.35662 0.57699 0.68959 0.90553 + eV 8.8960 9.7042 15.7009 18.7649 24.6409 + + irrep 1e5 2e5 3e5 4e5 5e5 + eigenvalues H -6.57065 -0.50172 -0.09347 -0.03624 0.21747 + eV -178.7979 -13.6526 -2.5435 -0.9862 5.9176 + occupation 2 * 1.0000 2 * 1.0000 + + irrep 6e5 7e5 8e5 9e5 10e5 + eigenvalues H 0.29877 0.40798 0.54251 0.82031 0.97780 + eV 8.1300 11.1018 14.7624 22.3219 26.6074 + + irrep 1e6 2e6 3e6 4e6 5e6 + eigenvalues H -6.57053 -0.43926 -0.02678 0.05979 0.19917 + eV -178.7947 -11.9529 -0.7286 1.6269 5.4198 + occupation 2 * 1.0000 2 * 1.0000 + + irrep 6e6 7e6 8e6 9e6 10e6 + eigenvalues H 0.33992 0.46230 0.49503 0.89863 0.95550 + eV 9.2498 12.5799 13.4705 24.4530 26.0006 + + irrep 1e7 2e7 3e7 4e7 5e7 + eigenvalues H -6.57044 -0.37777 -0.00966 0.16392 0.22671 + eV -178.7923 -10.2798 -0.2628 4.4606 6.1693 + occupation 2 * 1.0000 2 * 1.0000 + + irrep 6e7 7e7 8e7 9e7 10e7 + eigenvalues H 0.37425 0.43420 0.53635 0.77020 1.00897 + eV 10.1839 11.8152 14.5950 20.9582 27.4557 + + irrep 1e8 2e8 3e8 4e8 5e8 + eigenvalues H -6.57040 -0.32991 -0.02013 0.24888 0.27711 + eV -178.7910 -8.9773 -0.5477 6.7725 7.5405 + occupation 2 * 1.0000 2 * 1.0000 + + irrep 6e8 7e8 8e8 9e8 10e8 + eigenvalues H 0.31365 0.43010 0.59745 0.63424 0.92486 + eV 8.5350 11.7038 16.2577 17.2586 25.1670 + + irrep 1e9 2e9 3e9 4e9 5e9 + eigenvalues H -6.57047 -0.31297 -0.01442 0.17967 0.28240 + eV -178.7930 -8.5165 -0.3923 4.8891 7.6847 + occupation 2 * 1.0000 2 * 1.0000 + + irrep 6e9 7e9 8e9 9e9 10e9 + eigenvalues H 0.38466 0.43869 0.51689 0.75916 0.99092 + eV 10.4673 11.9374 14.0654 20.6579 26.9644 + + irrep 1e10 2e10 3e10 4e10 5e10 + eigenvalues H -6.57059 -0.32793 -0.01196 0.13020 0.27592 + eV -178.7963 -8.9234 -0.3254 3.5430 7.5081 + occupation 2 * 1.0000 2 * 1.0000 + + irrep 6e10 7e10 8e10 9e10 10e10 + eigenvalues H 0.34613 0.47266 0.52990 0.71276 1.03308 + eV 9.4189 12.8618 14.4194 19.3954 28.1116 + + irrep 1e11 2e11 3e11 4e11 5e11 + eigenvalues H -6.57075 -0.35775 -0.05347 0.12126 0.28127 + eV -178.8007 -9.7350 -1.4549 3.2997 7.6538 + occupation 2 * 1.0000 2 * 1.0000 + + irrep 6e11 7e11 8e11 9e11 10e11 + eigenvalues H 0.30599 0.45093 0.57607 0.61668 1.14876 + eV 8.3266 12.2705 15.6757 16.7808 31.2596 + + irrep 1e12 2e12 3e12 4e12 5e12 + eigenvalues H -6.57095 -0.38766 -0.10184 0.09942 0.23098 + eV -178.8060 -10.5488 -2.7712 2.7055 6.2852 + occupation 2 * 1.0000 2 * 1.0000 + + irrep 6e12 7e12 8e12 9e12 10e12 + eigenvalues H 0.34821 0.40790 0.51094 0.65399 1.27399 + eV 9.4754 11.0996 13.9034 17.7962 34.6672 + + irrep 1e13 2e13 3e13 4e13 5e13 + eigenvalues H -6.57109 -0.40899 -0.13520 0.07483 0.19600 + eV -178.8098 -11.1292 -3.6789 2.0362 5.3334 + occupation 2 * 1.0000 2 * 1.0000 + + irrep 6e13 7e13 8e13 9e13 10e13 + eigenvalues H 0.28926 0.40178 0.56823 0.64600 1.17967 + eV 7.8712 10.9331 15.4624 17.5786 32.1008 + + + _ _ _ + IRREP alpha occ. beta occ. tr(D*D-D) + + + a1 4.00000000 4.00000000 -0.00002807 + + + a2 0.00000000 0.00000000 0.00000000 + + + b1 0.00000000 0.00000000 0.00000000 + + + b2 3.00000000 3.00000000 -0.00004710 + + + e1 8.00000000 8.00000000 -0.00005750 + + + e2 8.00000000 8.00000000 -0.00004757 + + + e3 8.00000000 6.00000000 -0.50001494 + + + e4 4.00000000 4.00000000 -0.00001015 + + + e5 4.00000000 4.00000000 -0.00000905 + + + e6 4.00000000 4.00000000 -0.00000779 + + + e7 4.00000000 4.00000000 -0.00000805 + + + e8 4.00000000 4.00000000 -0.00002774 + + + e9 4.00000000 4.00000000 -0.00008209 + + + e10 4.00000000 4.00000000 -0.00011018 + + + e11 4.00000000 4.00000000 -0.00011196 + + + e12 4.00000000 4.00000000 -0.00010550 + + + e13 4.00000000 4.00000000 -0.00009842 + + ------------------------------------------------- + + sum 71.00000000 69.00000000 -0.50076612 + + 2.00153224 + + + + + ============================================================================== + electrostatic moments + ============================================================================== + + reference point for electrostatic moments: 0.00000 0.00000 0.00000 + + + nuc elec -> total + ------------------------------------------------------------------------------ + charge + ------------------------------------------------------------------------------ + 140.000000 -140.000000 0.000000 + a-b 2.000000 + + ------------------------------------------------------------------------------ + dipole moment + ------------------------------------------------------------------------------ + x 0.000000 -0.000000 -0.000000 + y 0.000000 -0.000000 0.000000 + z 0.000000 -0.000000 -0.000000 + + | dipole moment | = 0.0000 a.u. = 0.0000 debye + + ------------------------------------------------------------------------------ + quadrupole moment + ------------------------------------------------------------------------------ + xx 3322.276589 -3432.050022 -109.773433 + yy 3322.276589 -3432.050022 -109.773433 + zz 290.758554 -418.368635 -127.610081 + xy -0.000000 0.000000 0.000000 + xz -0.000000 0.000000 0.000000 + yz 0.000000 -0.000000 -0.000000 + + 1/3 trace= -115.718982 + anisotropy= 17.836648 + + ============================================================================== + +HOMO-LUMO Separation + HOMO : -0.14747059 H = -4.01288 eV + LUMO : -0.19682745 H = -5.35595 eV + HOMO-LUMO gap: -0.04935686 H = -1.34307 eV + + WARNING: HOMO-LUMO Gap is negativ ! + to check the occupation call eiger + + ============================================================================== + + + ------------------------------------------------------------------------ + total cpu-time : 2.67 seconds + total wall-time : 4.79 seconds + ------------------------------------------------------------------------ + + **** ridft : all done **** + + + 2023-01-25 00:22:04.897 + diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/ridft/h2o_dftd2_marij/ref_output.json b/turbomoleio/testfiles/outputs/TM_v7.6/ridft/h2o_dftd2_marij/ref_output.json new file mode 100644 index 0000000..f5c2d75 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/ridft/h2o_dftd2_marij/ref_output.json @@ -0,0 +1,263 @@ +{ + "@module": "turbomoleio.output.files", + "@class": "ScfOutput", + "@version": "1.3.0", + "dft": { + "@module": "turbomoleio.output.data", + "@class": "DFTData", + "@version": "1.3.0", + "functional": { + "@module": "turbomoleio.output.data", + "@class": "FunctionalData", + "@version": "1.3.0", + "msg": "B-P86 functional\n exchange: LDA + Becke (B88)\n correlation: LDA (VWN) + Perdew (P86)", + "name": "b-p", + "func_type": "GGA", + "xcfun": null + }, + "ri": { + "@module": "turbomoleio.output.data", + "@class": "RiData", + "@version": "1.3.0", + "ricore": 500, + "marij": true, + "rij_memory": 1, + "rik": false + }, + "spherical_gridsize": 3, + "gridpoints": 302, + "dispersion_correction": { + "@module": "turbomoleio.output.data", + "@class": "DispersionCorrectionData", + "@version": "1.3.0", + "correction": "D2", + "en_corr": -3.4691e-05 + } + }, + "scf": { + "@module": "turbomoleio.output.data", + "@class": "ScfData", + "@version": "1.3.0", + "iterations": { + "@module": "turbomoleio.output.data", + "@class": "ScfIterationData", + "@version": "1.3.0", + "energies": [ + -76.143984807101, + -76.317816923608, + -76.337678025158, + -76.342530285717, + -76.342755527926, + -76.34276301244, + -76.342763176485, + -76.343040873323 + ], + "first_index": 1, + "n_steps": 8, + "dampings": [ + 0.3, + 0.25, + 0.2, + 0.25, + 0.3, + 0.15, + 0.1, + 0.15 + ], + "converged": true + }, + "diis": true, + "diis_error_vect": "FDS-SDF", + "conv_tot_en": 1e-07, + "conv_one_e_en": 0.0001, + "virtual_orbital_shift_on": true, + "virtual_orbital_shift_limit": 0.1, + "orbital_characterization": "expanded", + "restart_file": "mos", + "n_occupied_orbitals": 5 + }, + "energies": { + "@module": "turbomoleio.output.data", + "@class": "ScfEnergiesData", + "@version": "1.3.0", + "total_energy": -76.34304087332, + "kinetic_energy": 75.98693877248, + "potential_energy": -152.32997964581, + "virial_theorem": 1.99533550017, + "wavefunction_norm": 1.0, + "coulomb_energy": null, + "xc_energy": null, + "ts_energy": null, + "free_energy": null, + "sigma0_energy": null + }, + "electrostatic": { + "@module": "turbomoleio.output.data", + "@class": "ElectrostaticMomentsData", + "@version": "1.3.0", + "charge": -0.0, + "unrestricted_electrons": null, + "dipole_vector": [ + 0.0, + -0.0, + 0.83303 + ], + "dipole_norm": 0.833, + "quadrupole_tensor": [ + [ + -3.238776, + 0.0, + -0.0 + ], + [ + 0.0, + -5.263831, + -0.0 + ], + [ + -0.0, + -0.0, + -5.338416 + ] + ], + "quadrupole_trace": -13.841021999999999, + "quadrupole_anisotropy": 2.063359 + }, + "geometry": { + "@module": "turbomoleio.output.data", + "@class": "GeometryData", + "@version": "1.3.0", + "center_of_mass": [ + 0.0, + 0.0, + -0.60378908 + ], + "center_of_charge": [ + 0.0, + 0.0, + -0.50790525 + ], + "molecule": { + "@module": "pymatgen.core.structure", + "@class": "Molecule", + "charge": 0.0, + "spin_multiplicity": 1, + "sites": [ + { + "name": "O", + "species": [ + { + "element": "O", + "occu": 1 + } + ], + "xyz": [ + 0.0, + 0.0, + -0.38395982917561094 + ], + "properties": {} + }, + { + "name": "H", + "species": [ + { + "element": "H", + "occu": 1 + } + ], + "xyz": [ + 0.7499151287230262, + 0.0, + 0.19197991458780547 + ], + "properties": {} + }, + { + "name": "H", + "species": [ + { + "element": "H", + "occu": 1 + } + ], + "xyz": [ + -0.7499151287230262, + 0.0, + 0.19197991458780547 + ], + "properties": {} + } + ] + } + }, + "basis": { + "@module": "turbomoleio.output.data", + "@class": "BasisData", + "@version": "1.3.0", + "basis_per_specie": { + "o": "def-SV(P)", + "h": "def-SV(P)" + }, + "aux_basis_per_specie": { + "o": "def-SV(P)", + "h": "def-SV(P)" + }, + "number_scf_basis_func": 18, + "number_scf_aux_basis_func": 47 + }, + "run": { + "@module": "turbomoleio.output.data", + "@class": "RunData", + "@version": "1.3.0", + "host": "frontal3", + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:22:05.878000" + }, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:22:06.849000" + }, + "cpu_time": 0.18, + "wall_time": 1.03 + }, + "tm": { + "@module": "turbomoleio.output.data", + "@class": "TurbomoleData", + "@version": "1.3.0", + "version": "7.6", + "build": null, + "executable": "ridft" + }, + "cosmo": null, + "spin": { + "@module": "turbomoleio.output.data", + "@class": "SpinData", + "@version": "1.3.0", + "unrestricted": false, + "s2": null + }, + "integral": { + "@module": "turbomoleio.output.data", + "@class": "IntegralData", + "@version": "1.3.0", + "integral_neglect_threshold": 1.8e-10, + "thize": 1e-05, + "thime": 5 + }, + "smearing": null, + "symmetry": { + "@module": "turbomoleio.output.data", + "@class": "SymmetryData", + "@version": "1.3.0", + "symbol": "c1", + "n_reps": 1, + "reps": [ + "a" + ] + }, + "periodicity": null +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/ridft/h2o_dftd2_marij/ref_parser.json b/turbomoleio/testfiles/outputs/TM_v7.6/ridft/h2o_dftd2_marij/ref_parser.json new file mode 100644 index 0000000..a3950f1 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/ridft/h2o_dftd2_marij/ref_parser.json @@ -0,0 +1,210 @@ +{ + "all_done": true, + "header": { + "executable": "ridft", + "host": "frontal3", + "tm_version": "7.6", + "tm_build": null, + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:22:05.878000" + } + }, + "centers": { + "center_of_mass": [ + 0.0, + 0.0, + -0.60378908 + ], + "center_of_charge": [ + 0.0, + 0.0, + -0.50790525 + ] + }, + "coordinates": { + "coords": [ + [ + 0.0, + 0.0, + -0.72557892 + ], + [ + 1.41713421, + 0.0, + 0.36278946 + ], + [ + -1.41713421, + 0.0, + 0.36278946 + ] + ], + "species": [ + "o", + "h", + "h" + ], + "charges": [ + 8.0, + 1.0, + 1.0 + ], + "isotopes": [ + 0, + 0, + 0 + ] + }, + "basis": { + "basis_per_specie": { + "o": "def-SV(P)", + "h": "def-SV(P)" + }, + "aux_basis_per_specie": { + "o": "def-SV(P)", + "h": "def-SV(P)" + }, + "number_scf_basis_func": 18, + "number_scf_aux_basis_func": 47 + }, + "symmetry": { + "symbol": "c1", + "n_reps": 1, + "reps": [ + "a" + ] + }, + "cosmo_header": null, + "density_functional_data": { + "functional_msg": "B-P86 functional\n exchange: LDA + Becke (B88)\n correlation: LDA (VWN) + Perdew (P86)", + "functional_name": "b-p", + "functional_type": "GGA", + "xcfun": null, + "spherical_gridsize": 3, + "gridpoints": 302 + }, + "rij_info": { + "marij": true, + "rij_memory": 1, + "rik": false, + "ricore": 500 + }, + "dftd": { + "correction": "D2", + "en_corr": -3.4691e-05 + }, + "pre_scf_run": { + "diis": true, + "diis_error_vect": "FDS-SDF", + "conv_tot_en": 1e-07, + "conv_one_e_en": 0.0001, + "virtual_orbital_shift_on": true, + "virtual_orbital_shift_limit": 0.1, + "orbital_characterization": "expanded", + "restart_file": "mos", + "n_occupied_orbitals": 5 + }, + "scf_iterations": { + "energies": [ + -76.143984807101, + -76.317816923608, + -76.337678025158, + -76.342530285717, + -76.342755527926, + -76.34276301244, + -76.342763176485, + -76.343040873323 + ], + "first_index": 1, + "n_steps": 8, + "dampings": [ + 0.3, + 0.25, + 0.2, + 0.25, + 0.3, + 0.15, + 0.1, + 0.15 + ], + "converged": true + }, + "scf_energies": { + "total_energy": -76.34304087332, + "kinetic_energy": 75.98693877248, + "potential_energy": -152.32997964581, + "virial_theorem": 1.99533550017, + "wavefunction_norm": 1.0 + }, + "cosmo_results": null, + "electrostatic_moments": { + "unrestricted_electrons": null, + "charge": -0.0, + "dipole": { + "norm": 0.833, + "moment": [ + 0.0, + -0.0, + 0.83303 + ] + }, + "quadrupole": { + "trace": -13.841021999999999, + "anisotropy": 2.063359, + "moment": [ + [ + -3.238776, + 0.0, + -0.0 + ], + [ + 0.0, + -5.263831, + -0.0 + ], + [ + -0.0, + -0.0, + -5.338416 + ] + ] + } + }, + "timings": { + "cpu_time": 0.18, + "wall_time": 1.03, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:22:06.849000" + } + }, + "s2": null, + "is_uhf": false, + "fermi": null, + "integral": { + "integral_neglect_threshold": 1.8e-10, + "thize": 1e-05, + "thime": 5 + }, + "pre_escf_run": null, + "escf_iterations": null, + "escf_gs_total_en": null, + "escf_excitations": null, + "rdgrad_memory": null, + "gradient": null, + "egrad_excited_state": null, + "statpt_info": null, + "relax_info": null, + "relax_gradient_values": null, + "relax_conv_info": null, + "aoforce_numerical_integration": null, + "aoforce_analysis": null, + "mp2_results": { + "energy": null + }, + "riper_scf_energies": null, + "periodicity_data": null +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/ridft/h2o_dftd2_marij/ridft.log b/turbomoleio/testfiles/outputs/TM_v7.6/ridft/h2o_dftd2_marij/ridft.log new file mode 100644 index 0000000..a9079f2 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/ridft/h2o_dftd2_marij/ridft.log @@ -0,0 +1,504 @@ + + ridft (frontal3) : TURBOMOLE rev. V7-6 19 Oct 2021 at 10:10:11 compiled Oct 19th 2021 + Copyright (C) 2021 TURBOMOLE GmbH, Karlsruhe + + + 2023-01-25 00:22:05.878 + + + + r i d f t + + DFT program with RI approximation + for coulomb part + + + + + + References: + + TURBOMOLE: + R. Ahlrichs, M. Baer, M. Haeser, H. Horn, and + C. Koelmel + Electronic structure calculations on workstation + computers: the program system TURBOMOLE + Chem. Phys. Lett. 162: 165 (1989) + Density Functional: + O. Treutler and R. Ahlrichs + Efficient Molecular Numerical Integration Schemes + J. Chem. Phys. 102: 346 (1995) + Parallel Version: + Performance of parallel TURBOMOLE for Density + Functional Calculations + M. v. Arnim and R. Ahlrichs + J. Comp. Chem. 19: 1746 (1998) + RI-J Method: + Auxiliary Basis Sets to approximate Coulomb + Potentials + Chem. Phys. Lett. 240: 283 (1995) + K. Eichkorn, O. Treutler, H. Oehm, M. Haeser + and R. Ahlrichs + Chem. Phys. Lett. 242: 652 (1995) + + Auxiliary Basis Sets for Main Row Atoms and their + Use to approximate Coulomb Potentials + K. Eichkorn, F. Weigend, O. Treutler and + R. Ahlrichs + Theo. Chem. Acc. 97: 119 (1997) + + Accurate Coulomb-fitting basis sets for H to Rn + F. Weigend + Phys. Chem. Chem. Phys. 8: 1057 (2006) + + Multipole accelerated RI-J (MARI-J): + Fast evaluation of the Coulomb potential for + electron densities using multipole accelerated + resolution of identity approximation + M. Sierka, A. Hogekamp and R. Ahlrichs + J. Chem. Phys. 118: 9136 (2003) + RI-JK Method: + A fully direct RI-HF algorithm: Implementation, + optimised auxiliary basis sets, demonstration of + accuracy and efficiency + F. Weigend + Phys. Chem. Chem. Phys. 4: 4285 (2002) + Two-component HF and DFT with spin-orbit coupling: + Self-consistent treatment of spin-orbit + interactions with efficient Hartree-Fock and + density functional methods + M. K. Armbruster, F. Weigend, C. van Wüllen and + W. Klopper + Phys. Chem. Chem. Phys. 10: 1748 (2008) + Two-component difference density and DIIS algorithm + Efficient two-component self-consistent field + procedures and gradients: implementation in + TURBOMOLE and application to Au20- + A. Baldes, F. Weigend + Mol. Phys. 111: 2617 (2013) + Relativistic all-electron 2c calculations + An efficient implementation of two-component + relativistic exact-decoupling methods for large + molecules + D. Peng, N. Middendorf, F. Weigend, M. Reiher + J. Chem. Phys. 138: 184105 (2013) + Finite nucleus model and SNSO approximation + Efficient implementation of one- and two- + component analytical energy gradients in exact + two-component theory + Y. J. Franzke, N. Middendorf, F. Weigend + J. Chem. Phys. 148: 104110 (2018) + Grids for all-electron relativistic methods + Error-consistent segmented contracted all- + electron relativistic basis sets of double- + and triple-zeta quality for NMR shielding + constants + Y. J. Franzke, R. Tress, T. M. Pazdera, + F. Weigend + Phys. Chem. Chem. Phys. 21: 166658 (2019) + Seminumerical exchange algorithms + Seminumerical calculation of the Hartree-Fock + exchange matirx: Application to two-component + procedures and efficient evaluation of local + hybrid functionsl + P. Plessow, F. Weigend, + J. Comput. Chem. 33: 810 (2012) + Improved seminumerical algorithms + C. Holzer, + J. Chem. Phys. 153 (2020), 184115 + + + + + + +--------------------------------------------------+ + | general information about current run | + +--------------------------------------------------+ + + + B-P86 functional + exchange: LDA + Becke (B88) + correlation: LDA (VWN) + Perdew (P86) + A DFT calculation using the RI-J approximation will be carried out. + Allocatable memory for RI due to $ricore (MB): 500 + Multipole approximation for Coulomb integrals is used + + ************************************************************************* + ridft + ************************************************************************* + + + + + +--------------------------------------------------+ + | Atomic coordinate, charge and isotop information | + +--------------------------------------------------+ + + atomic coordinates atom charge isotop + 0.00000000 0.00000000 -0.72557892 o 8.000 0 + 1.41713421 0.00000000 0.36278946 h 1.000 0 + -1.41713421 0.00000000 0.36278946 h 1.000 0 + + center of nuclear mass : 0.00000000 0.00000000 -0.60378908 + center of nuclear charge: 0.00000000 0.00000000 -0.50790525 + + +--------------------------------------------------+ + | basis set information | + +--------------------------------------------------+ + + we will work with the 1s 3p 5d 7f 9g ... basis set + ...i.e. with spherical basis functions... + + type atoms prim cont basis + --------------------------------------------------------------------------- + o 1 24 14 def-SV(P) [3s2p1d|7s4p1d] + h 2 4 2 def-SV(P) [2s|4s] + --------------------------------------------------------------------------- + total: 3 32 18 + --------------------------------------------------------------------------- + + total number of primitive shells : 16 + total number of contracted shells : 10 + total number of cartesian basis functions : 19 + total number of SCF-basis functions : 18 + + + integral neglect threshold : 0.18E-09 + integral storage threshold THIZE : 0.10E-04 + integral storage threshold THIME : 5 + + RI-J AUXILIARY BASIS SET information: + + we will work with the 1s 3p 5d 7f 9g ... basis set + ...i.e. with spherical basis functions... + + type atoms prim cont basis + --------------------------------------------------------------------------- + o 1 39 37 def-SV(P) [6s3p3d1f|8s3p3d1f] + h 2 10 5 def-SV(P) [2s1p|4s2p] + --------------------------------------------------------------------------- + total: 3 59 47 + --------------------------------------------------------------------------- + + total number of primitive shells : 21 + total number of contracted shells : 19 + total number of cartesian basis functions : 53 + total number of SCF-basis functions : 47 + + + symmetry group of the molecule : c1 + + the group has the following generators : + c1(z) + + 1 symmetry operations found + + there are 1 real representations : a + + maximum number of shells which are related by symmetry : 1 + + + ------------------ + density functional + ------------------ + B-P86 functional + exchange: LDA + Becke (B88) + correlation: LDA (VWN) + Perdew (P86) + + iterations will be done with small grid + + spherical integration : Lebedev's spherical grid + spherical gridsize : 3 + i.e. gridpoints : 302 + value for diffuse not defined + radial integration : Chebyshev 2nd kind (scaling 3) + radial gridsize : 3 + integration cells : 3 + partition function : becke + partition sharpness : 3 + + + biggest AO integral is expected to be 4.776656448 + + ------------------------ + nuclear repulsion energy : 9.30715477358 + ------------------------ + + + ------------------------------------------------------------ + DFT-D (empirical dispersive energy correction) switched on + cf. S. Grimme, J. Comp. Chem. 25, 1463-1473 (2004) + new parameters and C6ij from: + S. Grimme, J. Comp. Chem. 27, 1787-1799 (2006) + + flag (0th, 1st or 2nd deriv.) 0 + new parameters used (C6ij=sqrt(C6i*C6j)) + + + global scaling parameter (s6) 1.050 + exponent of damping function (d) 20.000 + + atomic number, C_6 coefficients and vdW radii (atomic units) + 8 12.1416943 2.3054659 + 1 2.4283389 1.7196508 + + -------------------------------------------------------------- + nuclear repulsion energy = 9.307154774 + empirical dispersive energy correction = -0.000034691 + nuclear repulsion + dispersion correction = 9.307120083 + + + ----------------- + -S,T+V- integrals + ----------------- + + 1e-integrals will be neglected if expon. factor < 0.175893E-10 + + Difference densities algorithm switched on. + The maximal number of linear combinations of + difference densities is 20 . + + DIIS switched on: error vector is FDS-SDF + Max. Iterations for DIIS is : 4 + DIIS matrix (see manual) + Scaling factor of diagonals : 1.200 + threshold for scaling factor : 0.000 + + scf convergence criterion : increment of total energy < .1000000D-06 + and increment of one-electron energy < .1000000D-03 + + MOs are in ASCII format ! + + + mo occupation : + irrep mo's occupied + a 18 5 + + number of basis functions : 18 + number of occupied orbitals : 5 + + + reading orbital data $scfmo from file mos + orbital characterization : expanded + virtual MOs provided and orthogonalized by Cholesky decomposition + + automatic virtual orbital shift switched on + shift if e(lumo)-e(homo) < 0.10000000 + + + ------------------------ + RI-J - INFORMATION + ------------------------ + + +---------------- Multipole Accelerated RI-J ---------------+ + ------------------------------------------------------------- + Number of bins for density partition : 8 + Maximum multipole moment used : 14 + Multipole precision parameter : 1.0000E-08 + Threshold for moment summation : 1.0000E-24 + Minimum separation between boxes : 0.0000E+00 + Maximum allowed extent : 2.0000E+01 + +-----------------------------------------------------------+ + + Extensions and centers of shell-pairs: + number of shells with a single center: 53 + number of shells with double centers: 2 + Contributions to RI integral batches: + neglected integral batches: 0 + multipole/direct contribution: 0 + multipole/memory contribution: 55 + Memory core needed for (P|Q) and Cholesky 1 MByte + Memory core minimum needed except of (P|Q) 1 MByte + Total minimum memory core needed (sum) 1 MByte + + **************************************** + Memory allocated for RI-J 1 MByte + **************************************** + + + DSCF restart information will be dumped onto file mos + + + Starting SCF iterations + + Overall gridpoints after grid construction = 3534 + + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 1 -76.143984807101 -124.43866883 38.987563939 0.000D+00 0.175D-09 + Exc = -9.50366130895 Coul = 48.4912252482 + N = 9.9990627195 + current damping = 0.300 + + max. resid. norm for Fia-block= 2.533D-01 for orbital 4a + max. resid. fock norm = 1.255D+00 for orbital 8a + + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 2 -76.317816923608 -122.45254575 36.827608744 0.606D+00 0.116D-09 + Exc = -9.23701667338 Coul = 46.0646254173 + N = 9.9994266250 + current damping = 0.250 + + Norm of current diis error: 0.35141 + max. resid. norm for Fia-block= 8.477D-02 for orbital 3a + max. resid. fock norm = 9.865D-02 for orbital 6a + + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 3 -76.337678025158 -123.68680103 38.042002926 0.298D+00 0.956D-10 + Exc = -9.42550129823 Coul = 47.4675042245 + N = 9.9992821723 + current damping = 0.200 + + Norm of current diis error: 0.17638 + max. resid. norm for Fia-block= 2.821D-02 for orbital 4a + max. resid. fock norm = 2.849D-02 for orbital 4a + + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 4 -76.342530285717 -123.12678990 37.477139536 0.697D-01 0.857D-10 + Exc = -9.35327819426 Coul = 46.8304177307 + N = 9.9993437762 + current damping = 0.250 + + Norm of current diis error: 0.42158E-01 + max. resid. norm for Fia-block= 5.371D-03 for orbital 2a + max. resid. fock norm = 5.449D-03 for orbital 2a + + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 5 -76.342755527926 -123.20998981 37.560114202 0.880D-02 0.815D-10 + Exc = -9.36433789949 Coul = 46.9244521016 + N = 9.9993384399 + current damping = 0.300 + + Norm of current diis error: 0.74103E-02 + max. resid. norm for Fia-block= 9.470D-04 for orbital 3a + max. resid. fock norm = 9.470D-04 for orbital 3a + mo-orthogonalization: Cholesky decomposition + + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 6 -76.342763012440 -123.22622857 37.576345477 0.363D-03 0.774D-10 + Exc = -9.36656911000 Coul = 46.9429145870 + N = 9.9993368247 + current damping = 0.150 + + Norm of current diis error: 0.10639E-02 + max. resid. norm for Fia-block= 1.611D-04 for orbital 2a + max. resid. fock norm = 1.703D-04 for orbital 6a + + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 7 -76.342763176485 -123.22847584 37.578592578 0.113D-03 0.750D-10 + Exc = -9.36690492665 Coul = 46.9454975049 + N = 9.9993367121 + current damping = 0.100 + + Norm of current diis error: 0.13715E-03 + max. resid. norm for Fia-block= 2.147D-05 for orbital 3a + max. resid. fock norm = 2.610D-05 for orbital 4a + + ENERGY CONVERGED ! + + Overall gridpoints after grid construction = 13740 + + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 8 -76.343040873323 -123.22871994 37.578558985 0.893D-05 0.730D-10 + Exc = -9.36721448536 Coul = 46.9457734703 + N = 9.9999983764 + current damping = 0.150 + + Norm of current diis error: 0.15463E-04 + max. resid. norm for Fia-block= 2.483D-06 for orbital 3a + max. resid. fock norm = 3.307D-06 for orbital 2a + + End of SCF iterations + + convergence criteria satisfied after 8 iterations + + + ************************************************************************* + ridft + ************************************************************************* + + + ------------------------------------------ + | total energy = -76.34304087332 | + ------------------------------------------ + : kinetic energy = 75.98693877248 : + : potential energy = -152.32997964581 : + : virial theorem = 1.99533550017 : + : wavefunction norm = 1.00000000000 : + .......................................... + + + : there is no data group $energy + + + : $end is missing + + + orbitals $scfmo will be written to file mos + + irrep 1a 2a 3a 4a 5a + eigenvalues H -18.75051 -0.90852 -0.47815 -0.31010 -0.23515 + eV -510.2313 -24.7222 -13.0113 -8.4384 -6.3988 + occupation 2.0000 2.0000 2.0000 2.0000 2.0000 + + irrep 6a 7a 8a 9a 10a + eigenvalues H 0.03388 0.11344 0.54374 0.63290 0.86085 + eV 0.9219 3.0869 14.7960 17.2223 23.4250 + + + + + ============================================================================== + electrostatic moments + ============================================================================== + + reference point for electrostatic moments: 0.00000 0.00000 0.00000 + + + nuc elec -> total + ------------------------------------------------------------------------------ + charge + ------------------------------------------------------------------------------ + 10.000000 -10.000000 -0.000000 + + ------------------------------------------------------------------------------ + dipole moment + ------------------------------------------------------------------------------ + x 0.000000 0.000000 0.000000 + y 0.000000 -0.000000 -0.000000 + z -5.079052 5.912083 0.833030 + + | dipole moment | = 0.8330 a.u. = 2.1174 debye + + ------------------------------------------------------------------------------ + quadrupole moment + ------------------------------------------------------------------------------ + xx 4.016539 -7.255314 -3.238776 + yy 0.000000 -5.263831 -5.263831 + zz 4.474951 -9.813367 -5.338416 + xy 0.000000 0.000000 0.000000 + xz 0.000000 -0.000000 -0.000000 + yz 0.000000 -0.000000 -0.000000 + + 1/3 trace= -4.613674 + anisotropy= 2.063359 + + ============================================================================== + +HOMO-LUMO Separation + HOMO : -0.23514986 H = -6.39876 eV + LUMO : 0.03388030 H = +0.92193 eV + HOMO-LUMO gap: 0.26903016 H = +7.32069 eV + + ============================================================================== + + + ------------------------------------------------------------------------ + total cpu-time : 0.18 seconds + total wall-time : 1.03 seconds + ------------------------------------------------------------------------ + + **** ridft : all done **** + + + 2023-01-25 00:22:06.849 + diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/ridft/h2o_dftd3-bj_not_conv/ref_output.json b/turbomoleio/testfiles/outputs/TM_v7.6/ridft/h2o_dftd3-bj_not_conv/ref_output.json new file mode 100644 index 0000000..23e2c17 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/ridft/h2o_dftd3-bj_not_conv/ref_output.json @@ -0,0 +1,253 @@ +{ + "@module": "turbomoleio.output.files", + "@class": "ScfOutput", + "@version": "1.3.0", + "dft": { + "@module": "turbomoleio.output.data", + "@class": "DFTData", + "@version": "1.3.0", + "functional": { + "@module": "turbomoleio.output.data", + "@class": "FunctionalData", + "@version": "1.3.0", + "msg": "B-P86 functional\n exchange: LDA + Becke (B88)\n correlation: LDA (VWN) + Perdew (P86)", + "name": "b-p", + "func_type": "GGA", + "xcfun": null + }, + "ri": { + "@module": "turbomoleio.output.data", + "@class": "RiData", + "@version": "1.3.0", + "ricore": 500, + "marij": false, + "rij_memory": 1, + "rik": false + }, + "spherical_gridsize": 3, + "gridpoints": 302, + "dispersion_correction": { + "@module": "turbomoleio.output.data", + "@class": "DispersionCorrectionData", + "@version": "1.3.0", + "correction": "D3-BJ", + "en_corr": -0.00045892 + } + }, + "scf": { + "@module": "turbomoleio.output.data", + "@class": "ScfData", + "@version": "1.3.0", + "iterations": { + "@module": "turbomoleio.output.data", + "@class": "ScfIterationData", + "@version": "1.3.0", + "energies": [ + -76.144409036162, + -76.318241152674, + -76.338102254224 + ], + "first_index": 1, + "n_steps": 3, + "dampings": [ + 0.3, + 0.25, + 0.2 + ], + "converged": false + }, + "diis": true, + "diis_error_vect": "FDS-SDF", + "conv_tot_en": 1e-08, + "conv_one_e_en": 1e-05, + "virtual_orbital_shift_on": true, + "virtual_orbital_shift_limit": 0.1, + "orbital_characterization": "expanded", + "restart_file": "mos", + "n_occupied_orbitals": 5 + }, + "energies": { + "@module": "turbomoleio.output.data", + "@class": "ScfEnergiesData", + "@version": "1.3.0", + "total_energy": -76.33810225422, + "kinetic_energy": 76.40312133994, + "potential_energy": -152.74122359417, + "virial_theorem": 2.0008517252, + "wavefunction_norm": 1.0, + "coulomb_energy": null, + "xc_energy": null, + "ts_energy": null, + "free_energy": null, + "sigma0_energy": null + }, + "electrostatic": { + "@module": "turbomoleio.output.data", + "@class": "ElectrostaticMomentsData", + "@version": "1.3.0", + "charge": -0.0, + "unrestricted_electrons": null, + "dipole_vector": [ + 0.0, + -0.0, + 0.818775 + ], + "dipole_norm": 0.8188, + "quadrupole_tensor": [ + [ + -3.296073, + -0.0, + 0.0 + ], + [ + -0.0, + -5.2881, + 0.0 + ], + [ + 0.0, + 0.0, + -5.356908 + ] + ], + "quadrupole_trace": -13.941080999999999, + "quadrupole_anisotropy": 2.027307 + }, + "geometry": { + "@module": "turbomoleio.output.data", + "@class": "GeometryData", + "@version": "1.3.0", + "center_of_mass": [ + 0.0, + 0.0, + -0.60378908 + ], + "center_of_charge": [ + 0.0, + 0.0, + -0.50790525 + ], + "molecule": { + "@module": "pymatgen.core.structure", + "@class": "Molecule", + "charge": 0.0, + "spin_multiplicity": 1, + "sites": [ + { + "name": "O", + "species": [ + { + "element": "O", + "occu": 1 + } + ], + "xyz": [ + 0.0, + 0.0, + -0.38395982917561094 + ], + "properties": {} + }, + { + "name": "H", + "species": [ + { + "element": "H", + "occu": 1 + } + ], + "xyz": [ + 0.7499151287230262, + 0.0, + 0.19197991458780547 + ], + "properties": {} + }, + { + "name": "H", + "species": [ + { + "element": "H", + "occu": 1 + } + ], + "xyz": [ + -0.7499151287230262, + 0.0, + 0.19197991458780547 + ], + "properties": {} + } + ] + } + }, + "basis": { + "@module": "turbomoleio.output.data", + "@class": "BasisData", + "@version": "1.3.0", + "basis_per_specie": { + "o": "def-SV(P)", + "h": "def-SV(P)" + }, + "aux_basis_per_specie": { + "o": "def-SV(P)", + "h": "def-SV(P)" + }, + "number_scf_basis_func": 18, + "number_scf_aux_basis_func": 47 + }, + "run": { + "@module": "turbomoleio.output.data", + "@class": "RunData", + "@version": "1.3.0", + "host": "frontal3", + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:21:58.322000" + }, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:21:58.787000" + }, + "cpu_time": 0.1, + "wall_time": 0.51 + }, + "tm": { + "@module": "turbomoleio.output.data", + "@class": "TurbomoleData", + "@version": "1.3.0", + "version": "7.6", + "build": null, + "executable": "ridft" + }, + "cosmo": null, + "spin": { + "@module": "turbomoleio.output.data", + "@class": "SpinData", + "@version": "1.3.0", + "unrestricted": false, + "s2": null + }, + "integral": { + "@module": "turbomoleio.output.data", + "@class": "IntegralData", + "@version": "1.3.0", + "integral_neglect_threshold": 1.8e-11, + "thize": 1e-05, + "thime": 5 + }, + "smearing": null, + "symmetry": { + "@module": "turbomoleio.output.data", + "@class": "SymmetryData", + "@version": "1.3.0", + "symbol": "c1", + "n_reps": 1, + "reps": [ + "a" + ] + }, + "periodicity": null +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/ridft/h2o_dftd3-bj_not_conv/ref_parser.json b/turbomoleio/testfiles/outputs/TM_v7.6/ridft/h2o_dftd3-bj_not_conv/ref_parser.json new file mode 100644 index 0000000..14ea0b8 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/ridft/h2o_dftd3-bj_not_conv/ref_parser.json @@ -0,0 +1,200 @@ +{ + "all_done": true, + "header": { + "executable": "ridft", + "host": "frontal3", + "tm_version": "7.6", + "tm_build": null, + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:21:58.322000" + } + }, + "centers": { + "center_of_mass": [ + 0.0, + 0.0, + -0.60378908 + ], + "center_of_charge": [ + 0.0, + 0.0, + -0.50790525 + ] + }, + "coordinates": { + "coords": [ + [ + 0.0, + 0.0, + -0.72557892 + ], + [ + 1.41713421, + 0.0, + 0.36278946 + ], + [ + -1.41713421, + 0.0, + 0.36278946 + ] + ], + "species": [ + "o", + "h", + "h" + ], + "charges": [ + 8.0, + 1.0, + 1.0 + ], + "isotopes": [ + 0, + 0, + 0 + ] + }, + "basis": { + "basis_per_specie": { + "o": "def-SV(P)", + "h": "def-SV(P)" + }, + "aux_basis_per_specie": { + "o": "def-SV(P)", + "h": "def-SV(P)" + }, + "number_scf_basis_func": 18, + "number_scf_aux_basis_func": 47 + }, + "symmetry": { + "symbol": "c1", + "n_reps": 1, + "reps": [ + "a" + ] + }, + "cosmo_header": null, + "density_functional_data": { + "functional_msg": "B-P86 functional\n exchange: LDA + Becke (B88)\n correlation: LDA (VWN) + Perdew (P86)", + "functional_name": "b-p", + "functional_type": "GGA", + "xcfun": null, + "spherical_gridsize": 3, + "gridpoints": 302 + }, + "rij_info": { + "marij": false, + "rij_memory": 1, + "rik": false, + "ricore": 500 + }, + "dftd": { + "correction": "D3-BJ", + "en_corr": -0.00045892 + }, + "pre_scf_run": { + "diis": true, + "diis_error_vect": "FDS-SDF", + "conv_tot_en": 1e-08, + "conv_one_e_en": 1e-05, + "virtual_orbital_shift_on": true, + "virtual_orbital_shift_limit": 0.1, + "orbital_characterization": "expanded", + "restart_file": "mos", + "n_occupied_orbitals": 5 + }, + "scf_iterations": { + "energies": [ + -76.144409036162, + -76.318241152674, + -76.338102254224 + ], + "first_index": 1, + "n_steps": 3, + "dampings": [ + 0.3, + 0.25, + 0.2 + ], + "converged": false + }, + "scf_energies": { + "total_energy": -76.33810225422, + "kinetic_energy": 76.40312133994, + "potential_energy": -152.74122359417, + "virial_theorem": 2.0008517252, + "wavefunction_norm": 1.0 + }, + "cosmo_results": null, + "electrostatic_moments": { + "unrestricted_electrons": null, + "charge": -0.0, + "dipole": { + "norm": 0.8188, + "moment": [ + 0.0, + -0.0, + 0.818775 + ] + }, + "quadrupole": { + "trace": -13.941080999999999, + "anisotropy": 2.027307, + "moment": [ + [ + -3.296073, + -0.0, + 0.0 + ], + [ + -0.0, + -5.2881, + 0.0 + ], + [ + 0.0, + 0.0, + -5.356908 + ] + ] + } + }, + "timings": { + "cpu_time": 0.1, + "wall_time": 0.51, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:21:58.787000" + } + }, + "s2": null, + "is_uhf": false, + "fermi": null, + "integral": { + "integral_neglect_threshold": 1.8e-11, + "thize": 1e-05, + "thime": 5 + }, + "pre_escf_run": null, + "escf_iterations": null, + "escf_gs_total_en": null, + "escf_excitations": null, + "rdgrad_memory": null, + "gradient": null, + "egrad_excited_state": null, + "statpt_info": null, + "relax_info": null, + "relax_gradient_values": null, + "relax_conv_info": null, + "aoforce_numerical_integration": null, + "aoforce_analysis": null, + "mp2_results": { + "energy": null + }, + "riper_scf_energies": null, + "periodicity_data": null +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/ridft/h2o_dftd3-bj_not_conv/ridft.log b/turbomoleio/testfiles/outputs/TM_v7.6/ridft/h2o_dftd3-bj_not_conv/ridft.log new file mode 100644 index 0000000..930114d --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/ridft/h2o_dftd3-bj_not_conv/ridft.log @@ -0,0 +1,464 @@ + + ridft (frontal3) : TURBOMOLE rev. V7-6 19 Oct 2021 at 10:10:11 compiled Oct 19th 2021 + Copyright (C) 2021 TURBOMOLE GmbH, Karlsruhe + + + 2023-01-25 00:21:58.322 + + + + r i d f t + + DFT program with RI approximation + for coulomb part + + + + + + References: + + TURBOMOLE: + R. Ahlrichs, M. Baer, M. Haeser, H. Horn, and + C. Koelmel + Electronic structure calculations on workstation + computers: the program system TURBOMOLE + Chem. Phys. Lett. 162: 165 (1989) + Density Functional: + O. Treutler and R. Ahlrichs + Efficient Molecular Numerical Integration Schemes + J. Chem. Phys. 102: 346 (1995) + Parallel Version: + Performance of parallel TURBOMOLE for Density + Functional Calculations + M. v. Arnim and R. Ahlrichs + J. Comp. Chem. 19: 1746 (1998) + RI-J Method: + Auxiliary Basis Sets to approximate Coulomb + Potentials + Chem. Phys. Lett. 240: 283 (1995) + K. Eichkorn, O. Treutler, H. Oehm, M. Haeser + and R. Ahlrichs + Chem. Phys. Lett. 242: 652 (1995) + + Auxiliary Basis Sets for Main Row Atoms and their + Use to approximate Coulomb Potentials + K. Eichkorn, F. Weigend, O. Treutler and + R. Ahlrichs + Theo. Chem. Acc. 97: 119 (1997) + + Accurate Coulomb-fitting basis sets for H to Rn + F. Weigend + Phys. Chem. Chem. Phys. 8: 1057 (2006) + + Multipole accelerated RI-J (MARI-J): + Fast evaluation of the Coulomb potential for + electron densities using multipole accelerated + resolution of identity approximation + M. Sierka, A. Hogekamp and R. Ahlrichs + J. Chem. Phys. 118: 9136 (2003) + RI-JK Method: + A fully direct RI-HF algorithm: Implementation, + optimised auxiliary basis sets, demonstration of + accuracy and efficiency + F. Weigend + Phys. Chem. Chem. Phys. 4: 4285 (2002) + Two-component HF and DFT with spin-orbit coupling: + Self-consistent treatment of spin-orbit + interactions with efficient Hartree-Fock and + density functional methods + M. K. Armbruster, F. Weigend, C. van Wüllen and + W. Klopper + Phys. Chem. Chem. Phys. 10: 1748 (2008) + Two-component difference density and DIIS algorithm + Efficient two-component self-consistent field + procedures and gradients: implementation in + TURBOMOLE and application to Au20- + A. Baldes, F. Weigend + Mol. Phys. 111: 2617 (2013) + Relativistic all-electron 2c calculations + An efficient implementation of two-component + relativistic exact-decoupling methods for large + molecules + D. Peng, N. Middendorf, F. Weigend, M. Reiher + J. Chem. Phys. 138: 184105 (2013) + Finite nucleus model and SNSO approximation + Efficient implementation of one- and two- + component analytical energy gradients in exact + two-component theory + Y. J. Franzke, N. Middendorf, F. Weigend + J. Chem. Phys. 148: 104110 (2018) + Grids for all-electron relativistic methods + Error-consistent segmented contracted all- + electron relativistic basis sets of double- + and triple-zeta quality for NMR shielding + constants + Y. J. Franzke, R. Tress, T. M. Pazdera, + F. Weigend + Phys. Chem. Chem. Phys. 21: 166658 (2019) + Seminumerical exchange algorithms + Seminumerical calculation of the Hartree-Fock + exchange matirx: Application to two-component + procedures and efficient evaluation of local + hybrid functionsl + P. Plessow, F. Weigend, + J. Comput. Chem. 33: 810 (2012) + Improved seminumerical algorithms + C. Holzer, + J. Chem. Phys. 153 (2020), 184115 + + + + + + +--------------------------------------------------+ + | general information about current run | + +--------------------------------------------------+ + + + B-P86 functional + exchange: LDA + Becke (B88) + correlation: LDA (VWN) + Perdew (P86) + A DFT calculation using the RI-J approximation will be carried out. + Allocatable memory for RI due to $ricore (MB): 500 + + ************************************************************************* + ridft + ************************************************************************* + + + + + +--------------------------------------------------+ + | Atomic coordinate, charge and isotop information | + +--------------------------------------------------+ + + atomic coordinates atom charge isotop + 0.00000000 0.00000000 -0.72557892 o 8.000 0 + 1.41713421 0.00000000 0.36278946 h 1.000 0 + -1.41713421 0.00000000 0.36278946 h 1.000 0 + + center of nuclear mass : 0.00000000 0.00000000 -0.60378908 + center of nuclear charge: 0.00000000 0.00000000 -0.50790525 + + +--------------------------------------------------+ + | basis set information | + +--------------------------------------------------+ + + we will work with the 1s 3p 5d 7f 9g ... basis set + ...i.e. with spherical basis functions... + + type atoms prim cont basis + --------------------------------------------------------------------------- + o 1 24 14 def-SV(P) [3s2p1d|7s4p1d] + h 2 4 2 def-SV(P) [2s|4s] + --------------------------------------------------------------------------- + total: 3 32 18 + --------------------------------------------------------------------------- + + total number of primitive shells : 16 + total number of contracted shells : 10 + total number of cartesian basis functions : 19 + total number of SCF-basis functions : 18 + + + integral neglect threshold : 0.18E-10 + integral storage threshold THIZE : 0.10E-04 + integral storage threshold THIME : 5 + + RI-J AUXILIARY BASIS SET information: + + we will work with the 1s 3p 5d 7f 9g ... basis set + ...i.e. with spherical basis functions... + + type atoms prim cont basis + --------------------------------------------------------------------------- + o 1 39 37 def-SV(P) [6s3p3d1f|8s3p3d1f] + h 2 10 5 def-SV(P) [2s1p|4s2p] + --------------------------------------------------------------------------- + total: 3 59 47 + --------------------------------------------------------------------------- + + total number of primitive shells : 21 + total number of contracted shells : 19 + total number of cartesian basis functions : 53 + total number of SCF-basis functions : 47 + + + symmetry group of the molecule : c1 + + the group has the following generators : + c1(z) + + 1 symmetry operations found + + there are 1 real representations : a + + maximum number of shells which are related by symmetry : 1 + + + ------------------ + density functional + ------------------ + B-P86 functional + exchange: LDA + Becke (B88) + correlation: LDA (VWN) + Perdew (P86) + + iterations will be done with small grid + + spherical integration : Lebedev's spherical grid + spherical gridsize : 3 + i.e. gridpoints : 302 + value for diffuse not defined + radial integration : Chebyshev 2nd kind (scaling 3) + radial gridsize : 3 + integration cells : 3 + partition function : becke + partition sharpness : 3 + + + biggest AO integral is expected to be 4.776656448 + + ------------------------ + nuclear repulsion energy : 9.30715477358 + ------------------------ + + _________________________________ + | | + | DFTD3 V3.1 Rev 0 | + | S.Grimme, University Bonn | + | June 2014 | + | see standalone version | + | dftd3 -h for options | + |_________________________________| + + Please cite DFT-D3 work done with this code as: + S. Grimme, J. Antony, S. Ehrlich and H. Krieg, + J. Chem. Phys, 132 (2010), 154104. + If used with BJ-damping cite also + S. Grimme, S. Ehrlich and L. Goerigk, + J. Comput. Chem. 32 (2011), 1456-1465 + For DFT-D2 the reference is + S. Grimme, J. Comput. Chem., 27 (2006), 1787-1799 + +C6 coefficients used: + 2 C6 for element 1 +Z= 1 CN= 0.912 C6(AA)= 3.03 +Z= 1 CN= 0.000 C6(AA)= 7.59 + 3 C6 for element 8 +Z= 8 CN= 0.000 C6(AA)= 15.51 +Z= 8 CN= 0.993 C6(AA)= 12.82 +Z= 8 CN= 1.989 C6(AA)= 10.37 + +# XYZ [au] R0(AA) [Ang.] CN C6(AA) C8(AA) C10(AA) [au] + 1 0.00000 0.00000 -0.72558 o 0.469 1.991 10.4 210.1 5194.4 + 2 1.41713 0.00000 0.36279 h 0.363 0.997 3.1 37.4 553.5 + 3 -1.41713 0.00000 0.36279 h 0.363 0.997 3.1 37.4 553.5 + +molecular C6(AA) [au] = 44.52 + + DFT-D V3(BJ) + DF b-p + parameters + s6 : 1.0000 + s8 : 3.2822 + a1 : 0.3946 + a2 : 4.8516 + k1-k3 : 16.0000 1.3333 -4.0000 + + Edisp /kcal,au: -0.2880 -0.00045892 + + E6 /kcal : -0.1313 + E8 /kcal : -0.1567 + % E8 : 54.41 + nuclear repulsion energy = 9.307154774 + DFT-D3 Energy contribution = -0.000458920 + nuclear repulsion + dispersion correction = 9.306695853 + + + ----------------- + -S,T+V- integrals + ----------------- + + 1e-integrals will be neglected if expon. factor < 0.175893E-11 + + Difference densities algorithm switched on. + The maximal number of linear combinations of + difference densities is 20 . + + DIIS switched on: error vector is FDS-SDF + Max. Iterations for DIIS is : 4 + DIIS matrix (see manual) + Scaling factor of diagonals : 1.200 + threshold for scaling factor : 0.000 + + scf convergence criterion : increment of total energy < .1000000D-07 + and increment of one-electron energy < .1000000D-04 + + MOs are in ASCII format ! + + + mo occupation : + irrep mo's occupied + a 18 5 + + number of basis functions : 18 + number of occupied orbitals : 5 + + + reading orbital data $scfmo from file mos + orbital characterization : expanded + virtual MOs provided and orthogonalized by Cholesky decomposition + + automatic virtual orbital shift switched on + shift if e(lumo)-e(homo) < 0.10000000 + + + ------------------------ + RI-J - INFORMATION + ------------------------ + Contributions to RI integral batches: + neglected integral batches: 0 + direct contribution: 0 + memory contribution: 55 + Memory core needed for (P|Q) and Cholesky 1 MByte + Memory core minimum needed except of (P|Q) 1 MByte + Total minimum memory core needed (sum) 1 MByte + + **************************************** + Memory allocated for RI-J 1 MByte + **************************************** + + + DSCF restart information will be dumped onto file mos + + + Starting SCF iterations + + Overall gridpoints after grid construction = 3534 + + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 1 -76.144409036162 -124.43866883 38.987563939 0.000D+00 0.175D-10 + Exc = -9.50366130895 Coul = 48.4912252482 + N = 9.9990627195 + current damping = 0.300 + + max. resid. norm for Fia-block= 2.533D-01 for orbital 4a + max. resid. fock norm = 1.255D+00 for orbital 8a + + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 2 -76.318241152674 -122.45254575 36.827608744 0.606D+00 0.116D-10 + Exc = -9.23701667338 Coul = 46.0646254173 + N = 9.9994266250 + current damping = 0.250 + + Norm of current diis error: 0.35141 + max. resid. norm for Fia-block= 8.477D-02 for orbital 3a + max. resid. fock norm = 9.865D-02 for orbital 6a + + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 3 -76.338102254224 -123.68680103 38.042002926 0.298D+00 0.956D-11 + Exc = -9.42550129824 Coul = 47.4675042246 + N = 9.9992821723 + current damping = 0.200 + + Norm of current diis error: 0.17638 + max. resid. norm for Fia-block= 2.821D-02 for orbital 4a + max. resid. fock norm = 2.849D-02 for orbital 4a + + End of SCF iterations + + convergence criteria cannot be satisfied within 3 iterations ! + + + ************************************************************************* + ridft + ************************************************************************* + + + ------------------------------------------ + | total energy = -76.33810225422 | + ------------------------------------------ + : kinetic energy = 76.40312133994 : + : potential energy = -152.74122359417 : + : virial theorem = 2.00085172520 : + : wavefunction norm = 1.00000000000 : + .......................................... + + + ATTENTION : $energy will not be updated since + this calculation did not converge (sob) + + A POSSIBLE REASON MAY BE THAT ... + - THE GEOMETRY IS FAR FROM BEING REASONABLE + + irrep 1a 2a 3a 4a 5a + eigenvalues H -18.75498 -0.90790 -0.47973 -0.30836 -0.23265 + eV -510.3530 -24.7053 -13.0543 -8.3910 -6.3308 + occupation 2.0000 2.0000 2.0000 2.0000 2.0000 + + irrep 6a 7a 8a 9a 10a + eigenvalues H 0.04749 0.12637 0.55147 0.64030 0.87378 + eV 1.2922 3.4388 15.0063 17.4236 23.7770 + + + + + ============================================================================== + electrostatic moments + ============================================================================== + + reference point for electrostatic moments: 0.00000 0.00000 0.00000 + + + nuc elec -> total + ------------------------------------------------------------------------------ + charge + ------------------------------------------------------------------------------ + 10.000000 -10.000000 -0.000000 + + ------------------------------------------------------------------------------ + dipole moment + ------------------------------------------------------------------------------ + x 0.000000 0.000000 0.000000 + y 0.000000 -0.000000 -0.000000 + z -5.079052 5.897828 0.818775 + + | dipole moment | = 0.8188 a.u. = 2.0811 debye + + ------------------------------------------------------------------------------ + quadrupole moment + ------------------------------------------------------------------------------ + xx 4.016539 -7.312612 -3.296073 + yy 0.000000 -5.288100 -5.288100 + zz 4.474951 -9.831859 -5.356908 + xy 0.000000 -0.000000 -0.000000 + xz 0.000000 0.000000 0.000000 + yz 0.000000 0.000000 0.000000 + + 1/3 trace= -4.647027 + anisotropy= 2.027307 + + ============================================================================== + +HOMO-LUMO Separation + HOMO : -0.23264995 H = -6.33073 eV + LUMO : 0.04748770 H = +1.29221 eV + HOMO-LUMO gap: 0.28013765 H = +7.62294 eV + + ============================================================================== + + ATTENTION: ridft did not converge! + + + + ------------------------------------------------------------------------ + total cpu-time : 0.10 seconds + total wall-time : 0.51 seconds + ------------------------------------------------------------------------ + + **** ridft : all done **** + + + 2023-01-25 00:21:58.787 + diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/ridft/nh3_rijk_libxc_m06/ref_output.json b/turbomoleio/testfiles/outputs/TM_v7.6/ridft/nh3_rijk_libxc_m06/ref_output.json new file mode 100644 index 0000000..739dd30 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/ridft/nh3_rijk_libxc_m06/ref_output.json @@ -0,0 +1,274 @@ +{ + "@module": "turbomoleio.output.files", + "@class": "ScfOutput", + "@version": "1.3.0", + "dft": { + "@module": "turbomoleio.output.data", + "@class": "DFTData", + "@version": "1.3.0", + "functional": { + "@module": "turbomoleio.output.data", + "@class": "FunctionalData", + "@version": "1.3.0", + "msg": "Name of XC-Functional: Minnesota M06 hybrid exchange functional\n HF exchange scaling factor = 0.27000\n [1] Y. Zhao and D. G. Truhlar, Theor. Chem. Acc. 120, 215 (2008)", + "name": "m06", + "func_type": "MHYB", + "xcfun": null + }, + "ri": { + "@module": "turbomoleio.output.data", + "@class": "RiData", + "@version": "1.3.0", + "ricore": 500, + "marij": false, + "rij_memory": 1, + "rik": true + }, + "spherical_gridsize": 3, + "gridpoints": 302, + "dispersion_correction": null + }, + "scf": { + "@module": "turbomoleio.output.data", + "@class": "ScfData", + "@version": "1.3.0", + "iterations": { + "@module": "turbomoleio.output.data", + "@class": "ScfIterationData", + "@version": "1.3.0", + "energies": [ + -56.284679298172, + -56.430416233621, + -56.451616450644, + -56.454045176285, + -56.454566001146, + -56.454586528094, + -56.454588600419, + -56.454588710087, + -56.453310865787 + ], + "first_index": 1, + "n_steps": 9, + "dampings": [ + 0.3, + 0.25, + 0.2, + 0.25, + 0.3, + 0.15, + 0.1, + 0.1, + 0.1 + ], + "converged": true + }, + "diis": true, + "diis_error_vect": "FDS-SDF", + "conv_tot_en": 1e-07, + "conv_one_e_en": 0.0001, + "virtual_orbital_shift_on": true, + "virtual_orbital_shift_limit": 0.1, + "orbital_characterization": "expanded", + "restart_file": "mos", + "n_occupied_orbitals": 5 + }, + "energies": { + "@module": "turbomoleio.output.data", + "@class": "ScfEnergiesData", + "@version": "1.3.0", + "total_energy": -56.45331086579, + "kinetic_energy": 56.12047867503, + "potential_energy": -112.57378954082, + "virial_theorem": 1.99410429281, + "wavefunction_norm": 1.0, + "coulomb_energy": null, + "xc_energy": null, + "ts_energy": null, + "free_energy": null, + "sigma0_energy": null + }, + "electrostatic": { + "@module": "turbomoleio.output.data", + "@class": "ElectrostaticMomentsData", + "@version": "1.3.0", + "charge": -0.0, + "unrestricted_electrons": null, + "dipole_vector": [ + 0.0023, + -0.0, + -0.744021 + ], + "dipole_norm": 0.744, + "quadrupole_tensor": [ + [ + -4.552874, + 0.0, + 0.001177 + ], + [ + 0.0, + -4.554608, + 0.0 + ], + [ + 0.001177, + 0.0, + -6.308538 + ] + ], + "quadrupole_trace": -15.416018999999999, + "quadrupole_anisotropy": 1.754798 + }, + "geometry": { + "@module": "turbomoleio.output.data", + "@class": "GeometryData", + "@version": "1.3.0", + "center_of_mass": [ + -0.0, + 0.0, + 0.0 + ], + "center_of_charge": [ + -0.0, + 0.0, + -0.08907541 + ], + "molecule": { + "@module": "pymatgen.core.structure", + "@class": "Molecule", + "charge": 0.0, + "spin_multiplicity": 1, + "sites": [ + { + "name": "N", + "species": [ + { + "element": "N", + "occu": 1 + } + ], + "xyz": [ + 0.0, + 0.0, + 0.06835414842221127 + ], + "properties": {} + }, + { + "name": "H", + "species": [ + { + "element": "H", + "occu": 1 + } + ], + "xyz": [ + 0.9293011495767791, + 0.0, + -0.3166152662034489 + ], + "properties": {} + }, + { + "name": "H", + "species": [ + { + "element": "H", + "occu": 1 + } + ], + "xyz": [ + -0.46465057478838956, + 0.8047984044784159, + -0.3166152662034489 + ], + "properties": {} + }, + { + "name": "H", + "species": [ + { + "element": "H", + "occu": 1 + } + ], + "xyz": [ + -0.46465057478838956, + -0.8047984044784159, + -0.3166152662034489 + ], + "properties": {} + } + ] + } + }, + "basis": { + "@module": "turbomoleio.output.data", + "@class": "BasisData", + "@version": "1.3.0", + "basis_per_specie": { + "n": "def-SV(P)", + "h": "def-SV(P)" + }, + "aux_basis_per_specie": { + "n": "def-SV(P)", + "h": "def-SV(P)" + }, + "number_scf_basis_func": 20, + "number_scf_aux_basis_func": 131 + }, + "run": { + "@module": "turbomoleio.output.data", + "@class": "RunData", + "@version": "1.3.0", + "host": "frontal3", + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:22:08.891000" + }, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:22:12.313000" + }, + "cpu_time": 0.39, + "wall_time": 3.56 + }, + "tm": { + "@module": "turbomoleio.output.data", + "@class": "TurbomoleData", + "@version": "1.3.0", + "version": "7.6", + "build": null, + "executable": "ridft" + }, + "cosmo": null, + "spin": { + "@module": "turbomoleio.output.data", + "@class": "SpinData", + "@version": "1.3.0", + "unrestricted": false, + "s2": null + }, + "integral": { + "@module": "turbomoleio.output.data", + "@class": "IntegralData", + "@version": "1.3.0", + "integral_neglect_threshold": 1.6e-10, + "thize": 1e-05, + "thime": 5 + }, + "smearing": null, + "symmetry": { + "@module": "turbomoleio.output.data", + "@class": "SymmetryData", + "@version": "1.3.0", + "symbol": "c1", + "n_reps": 1, + "reps": [ + "a" + ] + }, + "periodicity": null +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/ridft/nh3_rijk_libxc_m06/ref_parser.json b/turbomoleio/testfiles/outputs/TM_v7.6/ridft/nh3_rijk_libxc_m06/ref_parser.json new file mode 100644 index 0000000..0d89976 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/ridft/nh3_rijk_libxc_m06/ref_parser.json @@ -0,0 +1,217 @@ +{ + "all_done": true, + "header": { + "executable": "ridft", + "host": "frontal3", + "tm_version": "7.6", + "tm_build": null, + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:22:08.891000" + } + }, + "centers": { + "center_of_mass": [ + -0.0, + 0.0, + 0.0 + ], + "center_of_charge": [ + -0.0, + 0.0, + -0.08907541 + ] + }, + "coordinates": { + "coords": [ + [ + 0.0, + 0.0, + 0.12917062 + ], + [ + 1.75612466, + 0.0, + -0.59831614 + ], + [ + -0.87806233, + 1.52084857, + -0.59831614 + ], + [ + -0.87806233, + -1.52084857, + -0.59831614 + ] + ], + "species": [ + "n", + "h", + "h", + "h" + ], + "charges": [ + 7.0, + 1.0, + 1.0, + 1.0 + ], + "isotopes": [ + 0, + 0, + 0, + 0 + ] + }, + "basis": { + "basis_per_specie": { + "n": "def-SV(P)", + "h": "def-SV(P)" + }, + "aux_basis_per_specie": { + "n": "def-SV(P)", + "h": "def-SV(P)" + }, + "number_scf_basis_func": 20, + "number_scf_aux_basis_func": 131 + }, + "symmetry": { + "symbol": "c1", + "n_reps": 1, + "reps": [ + "a" + ] + }, + "cosmo_header": null, + "density_functional_data": { + "functional_msg": "Name of XC-Functional: Minnesota M06 hybrid exchange functional\n HF exchange scaling factor = 0.27000\n [1] Y. Zhao and D. G. Truhlar, Theor. Chem. Acc. 120, 215 (2008)", + "functional_name": "m06", + "functional_type": "MHYB", + "xcfun": null, + "spherical_gridsize": 3, + "gridpoints": 302 + }, + "rij_info": { + "marij": false, + "rij_memory": 1, + "rik": true, + "ricore": 500 + }, + "dftd": null, + "pre_scf_run": { + "diis": true, + "diis_error_vect": "FDS-SDF", + "conv_tot_en": 1e-07, + "conv_one_e_en": 0.0001, + "virtual_orbital_shift_on": true, + "virtual_orbital_shift_limit": 0.1, + "orbital_characterization": "expanded", + "restart_file": "mos", + "n_occupied_orbitals": 5 + }, + "scf_iterations": { + "energies": [ + -56.284679298172, + -56.430416233621, + -56.451616450644, + -56.454045176285, + -56.454566001146, + -56.454586528094, + -56.454588600419, + -56.454588710087, + -56.453310865787 + ], + "first_index": 1, + "n_steps": 9, + "dampings": [ + 0.3, + 0.25, + 0.2, + 0.25, + 0.3, + 0.15, + 0.1, + 0.1, + 0.1 + ], + "converged": true + }, + "scf_energies": { + "total_energy": -56.45331086579, + "kinetic_energy": 56.12047867503, + "potential_energy": -112.57378954082, + "virial_theorem": 1.99410429281, + "wavefunction_norm": 1.0 + }, + "cosmo_results": null, + "electrostatic_moments": { + "unrestricted_electrons": null, + "charge": -0.0, + "dipole": { + "norm": 0.744, + "moment": [ + 0.0023, + -0.0, + -0.744021 + ] + }, + "quadrupole": { + "trace": -15.416018999999999, + "anisotropy": 1.754798, + "moment": [ + [ + -4.552874, + 0.0, + 0.001177 + ], + [ + 0.0, + -4.554608, + 0.0 + ], + [ + 0.001177, + 0.0, + -6.308538 + ] + ] + } + }, + "timings": { + "cpu_time": 0.39, + "wall_time": 3.56, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:22:12.313000" + } + }, + "s2": null, + "is_uhf": false, + "fermi": null, + "integral": { + "integral_neglect_threshold": 1.6e-10, + "thize": 1e-05, + "thime": 5 + }, + "pre_escf_run": null, + "escf_iterations": null, + "escf_gs_total_en": null, + "escf_excitations": null, + "rdgrad_memory": null, + "gradient": null, + "egrad_excited_state": null, + "statpt_info": null, + "relax_info": null, + "relax_gradient_values": null, + "relax_conv_info": null, + "aoforce_numerical_integration": null, + "aoforce_analysis": null, + "mp2_results": { + "energy": null + }, + "riper_scf_energies": null, + "periodicity_data": null +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/ridft/nh3_rijk_libxc_m06/ridft.log b/turbomoleio/testfiles/outputs/TM_v7.6/ridft/nh3_rijk_libxc_m06/ridft.log new file mode 100644 index 0000000..85ed941 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/ridft/nh3_rijk_libxc_m06/ridft.log @@ -0,0 +1,511 @@ + + ridft (frontal3) : TURBOMOLE rev. V7-6 19 Oct 2021 at 10:10:11 compiled Oct 19th 2021 + Copyright (C) 2021 TURBOMOLE GmbH, Karlsruhe + + + 2023-01-25 00:22:08.891 + + + + r i d f t + + DFT program with RI approximation + for coulomb part + + + + + + References: + + TURBOMOLE: + R. Ahlrichs, M. Baer, M. Haeser, H. Horn, and + C. Koelmel + Electronic structure calculations on workstation + computers: the program system TURBOMOLE + Chem. Phys. Lett. 162: 165 (1989) + Density Functional: + O. Treutler and R. Ahlrichs + Efficient Molecular Numerical Integration Schemes + J. Chem. Phys. 102: 346 (1995) + Parallel Version: + Performance of parallel TURBOMOLE for Density + Functional Calculations + M. v. Arnim and R. Ahlrichs + J. Comp. Chem. 19: 1746 (1998) + RI-J Method: + Auxiliary Basis Sets to approximate Coulomb + Potentials + Chem. Phys. Lett. 240: 283 (1995) + K. Eichkorn, O. Treutler, H. Oehm, M. Haeser + and R. Ahlrichs + Chem. Phys. Lett. 242: 652 (1995) + + Auxiliary Basis Sets for Main Row Atoms and their + Use to approximate Coulomb Potentials + K. Eichkorn, F. Weigend, O. Treutler and + R. Ahlrichs + Theo. Chem. Acc. 97: 119 (1997) + + Accurate Coulomb-fitting basis sets for H to Rn + F. Weigend + Phys. Chem. Chem. Phys. 8: 1057 (2006) + + Multipole accelerated RI-J (MARI-J): + Fast evaluation of the Coulomb potential for + electron densities using multipole accelerated + resolution of identity approximation + M. Sierka, A. Hogekamp and R. Ahlrichs + J. Chem. Phys. 118: 9136 (2003) + RI-JK Method: + A fully direct RI-HF algorithm: Implementation, + optimised auxiliary basis sets, demonstration of + accuracy and efficiency + F. Weigend + Phys. Chem. Chem. Phys. 4: 4285 (2002) + Two-component HF and DFT with spin-orbit coupling: + Self-consistent treatment of spin-orbit + interactions with efficient Hartree-Fock and + density functional methods + M. K. Armbruster, F. Weigend, C. van Wüllen and + W. Klopper + Phys. Chem. Chem. Phys. 10: 1748 (2008) + Two-component difference density and DIIS algorithm + Efficient two-component self-consistent field + procedures and gradients: implementation in + TURBOMOLE and application to Au20- + A. Baldes, F. Weigend + Mol. Phys. 111: 2617 (2013) + Relativistic all-electron 2c calculations + An efficient implementation of two-component + relativistic exact-decoupling methods for large + molecules + D. Peng, N. Middendorf, F. Weigend, M. Reiher + J. Chem. Phys. 138: 184105 (2013) + Finite nucleus model and SNSO approximation + Efficient implementation of one- and two- + component analytical energy gradients in exact + two-component theory + Y. J. Franzke, N. Middendorf, F. Weigend + J. Chem. Phys. 148: 104110 (2018) + Grids for all-electron relativistic methods + Error-consistent segmented contracted all- + electron relativistic basis sets of double- + and triple-zeta quality for NMR shielding + constants + Y. J. Franzke, R. Tress, T. M. Pazdera, + F. Weigend + Phys. Chem. Chem. Phys. 21: 166658 (2019) + Seminumerical exchange algorithms + Seminumerical calculation of the Hartree-Fock + exchange matirx: Application to two-component + procedures and efficient evaluation of local + hybrid functionsl + P. Plessow, F. Weigend, + J. Comput. Chem. 33: 810 (2012) + Improved seminumerical algorithms + C. Holzer, + J. Chem. Phys. 153 (2020), 184115 + + + + + + +--------------------------------------------------+ + | general information about current run | + +--------------------------------------------------+ + + + Libxc version: 5.1.4 + S. Lehtola, C. Steigemann, M.J.T. Oliveira, and M.A.L. Marques, Software X 7, 1 (2018) + M.A.L. Marques, M.J.T. Oliveira, and T. Burnus, Comput. Phys. Commun. 183, 2272 (2012) + TURBOMOLE integration by Christof Holzer + + Name of XC-Functional: Minnesota M06 hybrid exchange functional + HF exchange scaling factor = 0.27000 + [1] Y. Zhao and D. G. Truhlar, Theor. Chem. Acc. 120, 215 (2008) + A Hybrid-DFT calculation using the RI-JK approximation will be carried out. + Allocatable memory for RI due to $ricore (MB): 500 + + ************************************************************************* + ridft + ************************************************************************* + + + + + +--------------------------------------------------+ + | Atomic coordinate, charge and isotop information | + +--------------------------------------------------+ + + atomic coordinates atom charge isotop + 0.00000000 0.00000000 0.12917062 n 7.000 0 + 1.75612466 0.00000000 -0.59831614 h 1.000 0 + -0.87806233 1.52084857 -0.59831614 h 1.000 0 + -0.87806233 -1.52084857 -0.59831614 h 1.000 0 + + center of nuclear mass : -0.00000000 0.00000000 0.00000000 + center of nuclear charge: -0.00000000 0.00000000 -0.08907541 + + +--------------------------------------------------+ + | basis set information | + +--------------------------------------------------+ + + we will work with the 1s 3p 5d 7f 9g ... basis set + ...i.e. with spherical basis functions... + + type atoms prim cont basis + --------------------------------------------------------------------------- + n 1 24 14 def-SV(P) [3s2p1d|7s4p1d] + h 3 4 2 def-SV(P) [2s|4s] + --------------------------------------------------------------------------- + total: 4 36 20 + --------------------------------------------------------------------------- + + total number of primitive shells : 16 + total number of contracted shells : 12 + total number of cartesian basis functions : 21 + total number of SCF-basis functions : 20 + + + integral neglect threshold : 0.16E-09 + integral storage threshold THIZE : 0.10E-04 + integral storage threshold THIME : 5 + + RI-JK AUXILIARY BASIS SET information: + + we will work with the 1s 3p 5d 7f 9g ... basis set + ...i.e. with spherical basis functions... + + type atoms prim cont basis + --------------------------------------------------------------------------- + n 1 97 77 def-SV(P) [10s8p4d2f1g|14s10p6d2f1g] + h 3 20 18 def-SV(P) [2s2p2d|4s2p2d] + --------------------------------------------------------------------------- + total: 4 157 131 + --------------------------------------------------------------------------- + + total number of primitive shells : 41 + total number of contracted shells : 43 + total number of cartesian basis functions : 153 + total number of SCF-basis functions : 131 + + + symmetry group of the molecule : c1 + + the group has the following generators : + c1(z) + + 1 symmetry operations found + + there are 1 real representations : a + + maximum number of shells which are related by symmetry : 1 + + + ------------------ + density functional + ------------------ + Name of XC-Functional: Minnesota M06 hybrid exchange functional + HF exchange scaling factor = 0.27000 + [1] Y. Zhao and D. G. Truhlar, Theor. Chem. Acc. 120, 215 (2008) + + iterations will be done with small grid + + spherical integration : Lebedev's spherical grid + spherical gridsize : 3 + i.e. gridpoints : 302 + value for diffuse not defined + radial integration : Chebyshev 2nd kind (scaling 3) + radial gridsize : 3 + integration cells : 4 + partition function : becke + partition sharpness : 3 + + + biggest AO integral is expected to be 4.152585025 + + ------------------------ + nuclear repulsion energy : 12.0340111163 + ------------------------ + + + ----------------- + -S,T+V- integrals + ----------------- + + 1e-integrals will be neglected if expon. factor < 0.159141E-10 + + Difference densities algorithm switched on. + The maximal number of linear combinations of + difference densities is 20 . + + DIIS switched on: error vector is FDS-SDF + Max. Iterations for DIIS is : 4 + DIIS matrix (see manual) + Scaling factor of diagonals : 1.200 + threshold for scaling factor : 0.000 + + scf convergence criterion : increment of total energy < .1000000D-06 + and increment of one-electron energy < .1000000D-03 + + MOs are in ASCII format ! + + + mo occupation : + irrep mo's occupied + a 20 5 + + number of basis functions : 20 + number of occupied orbitals : 5 + + + reading orbital data $scfmo from file mos + orbital characterization : expanded + virtual MOs provided and orthogonalized by Cholesky decomposition + + automatic virtual orbital shift switched on + shift if e(lumo)-e(homo) < 0.10000000 + + + ------------------------ + RI-JK - INFORMATION + ------------------------ + Contributions to RI integral batches: + neglected integral batches: 0 + direct contribution: 0 + memory contribution: 78 + Memory core needed for (P|Q) and Cholesky 1 MByte + Memory core minimum needed except of (P|Q) 1 MByte + Total minimum memory core needed (sum) 1 MByte + + **************************************** + Memory allocated for RI-J 1 MByte + **************************************** + + total memory allocated for calculation of (Q|P)**(-1/2) : 1 MiB + + forming (P|Q)**(-1/2) + eigenvalues of original matrix + smallest =0.8893736118121E-06 largest = 11.98330425382 + The symmetry information takes 1 MB + + DSCF restart information will be dumped onto file mos + + + Starting SCF iterations + + Overall gridpoints after grid construction = 4369 + + BLOCKING OF MOS FOR RI-K + + + occupied MOs partitioned into blocks of maximum length 5 + this requires 1 MiB core memory. + + MULTIPLE PASS Statistics + ---------------------------------------------------- + pass irrep lambda batch : MO to MO + ---------------------------------------------------- + 1 1 -> 1 1 -> 5 1 -> 5 + + + + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 1 -56.284679298172 -100.05712582 31.738435409 0.000D+00 0.159D-09 + Exc = -5.91410198974 Coul = 39.7140156329 + RI-K = -2.06147823388 + N = 9.9991073352 + current damping = 0.300 + + max. resid. norm for Fia-block= 2.240D-01 for orbital 1a + max. resid. fock norm = 1.066D+00 for orbital 14a + + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 2 -56.430416233621 -99.544641050 31.080213700 0.446D+00 0.102D-09 + Exc = -5.88095208146 Coul = 39.0144952264 + RI-K = -2.05332944467 + N = 9.9992788992 + current damping = 0.250 + + Norm of current diis error: 0.28309 + max. resid. norm for Fia-block= 7.396D-02 for orbital 2a + max. resid. fock norm = 7.967D-02 for orbital 6a + + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 3 -56.451616450644 -99.982172908 31.496545341 0.173D+00 0.779D-10 + Exc = -5.94454156826 Coul = 39.5174844623 + RI-K = -2.07639755307 + N = 9.9993813515 + current damping = 0.200 + + Norm of current diis error: 0.97163E-01 + max. resid. norm for Fia-block= 2.597D-02 for orbital 5a + max. resid. fock norm = 2.602D-02 for orbital 5a + + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 4 -56.454045176285 -99.679200153 31.191143860 0.102D+00 0.702D-10 + Exc = -5.92091154888 Coul = 39.1806832044 + RI-K = -2.06862779531 + N = 9.9994060418 + current damping = 0.250 + + Norm of current diis error: 0.57257E-01 + max. resid. norm for Fia-block= 8.027D-03 for orbital 2a + max. resid. fock norm = 8.038D-03 for orbital 2a + + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 5 -56.454566001146 -99.793102061 31.304524944 0.115D-01 0.669D-10 + Exc = -5.93323844566 Coul = 39.3105767433 + RI-K = -2.07281335358 + N = 9.9994111853 + current damping = 0.300 + + Norm of current diis error: 0.93117E-02 + max. resid. norm for Fia-block= 1.621D-03 for orbital 2a + max. resid. fock norm = 1.675D-03 for orbital 2a + mo-orthogonalization: Cholesky decomposition + + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 6 -56.454586528094 -99.806926722 31.318329077 0.135D-02 0.635D-10 + Exc = -5.93487429536 Coul = 39.3265632635 + RI-K = -2.07335989084 + N = 9.9994127910 + current damping = 0.150 + + Norm of current diis error: 0.24698E-02 + max. resid. norm for Fia-block= 4.716D-04 for orbital 5a + max. resid. fock norm = 5.831D-04 for orbital 6a + + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 7 -56.454588600419 -99.810081649 31.321481932 0.193D-03 0.603D-10 + Exc = -5.93527656058 Coul = 39.3302499123 + RI-K = -2.07349141957 + N = 9.9994133398 + current damping = 0.100 + + Norm of current diis error: 0.51657E-03 + max. resid. norm for Fia-block= 1.206D-04 for orbital 5a + max. resid. fock norm = 1.422D-04 for orbital 6a + + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 8 -56.454588710087 -99.810732292 31.322132466 0.316D-04 0.579D-10 + Exc = -5.93535661516 Coul = 39.3310062434 + RI-K = -2.07351716231 + N = 9.9994134576 + current damping = 0.100 + + Norm of current diis error: 0.86864E-04 + max. resid. norm for Fia-block= 2.232D-05 for orbital 5a + max. resid. fock norm = 2.613D-05 for orbital 6a + + ENERGY CONVERGED ! + + Overall gridpoints after grid construction = 17370 + + ITERATION ENERGY 1e-ENERGY 2e-ENERGY NORM[dD(SAO)] TOL + 9 -56.453310865787 -99.810841373 31.323519391 0.182D-05 0.564D-10 + Exc = -5.93409148531 Coul = 39.3311320720 + RI-K = -2.07352119613 + N = 9.9999978195 + current damping = 0.100 + + Norm of current diis error: 0.10593E-04 + max. resid. norm for Fia-block= 3.569D-06 for orbital 5a + max. resid. fock norm = 3.639D-06 for orbital 6a + + End of SCF iterations + + convergence criteria satisfied after 9 iterations + + + ************************************************************************* + ridft + ************************************************************************* + + + ------------------------------------------ + | total energy = -56.45331086579 | + ------------------------------------------ + : kinetic energy = 56.12047867503 : + : potential energy = -112.57378954082 : + : virial theorem = 1.99410429281 : + : wavefunction norm = 1.00000000000 : + .......................................... + + + : there is no data group $energy + + + : $end is missing + + + orbitals $scfmo will be written to file mos + + irrep 1a 2a 3a 4a 5a + eigenvalues H -14.35464 -0.85633 -0.46732 -0.46629 -0.26475 + eV -390.6127 -23.3022 -12.7164 -12.6885 -7.2041 + occupation 2.0000 2.0000 2.0000 2.0000 2.0000 + + irrep 6a 7a 8a 9a 10a + eigenvalues H 0.05381 0.13105 0.13107 0.53050 0.53121 + eV 1.4644 3.5660 3.5666 14.4357 14.4551 + + + + + ============================================================================== + electrostatic moments + ============================================================================== + + reference point for electrostatic moments: 0.00000 0.00000 0.00000 + + + nuc elec -> total + ------------------------------------------------------------------------------ + charge + ------------------------------------------------------------------------------ + 10.000000 -10.000000 -0.000000 + + ------------------------------------------------------------------------------ + dipole moment + ------------------------------------------------------------------------------ + x -0.000000 0.002300 0.002300 + y 0.000000 -0.000000 -0.000000 + z -0.890754 0.146733 -0.744021 + + | dipole moment | = 0.7440 a.u. = 1.8911 debye + + ------------------------------------------------------------------------------ + quadrupole moment + ------------------------------------------------------------------------------ + xx 4.625961 -9.178835 -4.552874 + yy 4.625961 -9.180569 -4.554608 + zz 1.190742 -7.499280 -6.308538 + xy 0.000000 0.000000 0.000000 + xz 0.000000 0.001177 0.001177 + yz 0.000000 0.000000 0.000000 + + 1/3 trace= -5.138673 + anisotropy= 1.754798 + + ============================================================================== + +HOMO-LUMO Separation + HOMO : -0.26474503 H = -7.20408 eV + LUMO : 0.05381355 H = +1.46434 eV + HOMO-LUMO gap: 0.31855857 H = +8.66842 eV + + ============================================================================== + + + ------------------------------------------------------------------------ + total cpu-time : 0.39 seconds + total wall-time : 3.56 seconds + ------------------------------------------------------------------------ + + **** ridft : all done **** + + + 2023-01-25 00:22:12.313 + diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/rimp2/h2o_std_mp2/ref_output.json b/turbomoleio/testfiles/outputs/TM_v7.6/rimp2/h2o_std_mp2/ref_output.json new file mode 100644 index 0000000..2022e09 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/rimp2/h2o_std_mp2/ref_output.json @@ -0,0 +1,129 @@ +{ + "@module": "turbomoleio.output.files", + "@class": "MP2Output", + "@version": "1.3.0", + "info": null, + "results": { + "@module": "turbomoleio.output.data", + "@class": "MP2Results", + "@version": "1.3.0", + "energy": -76.1252418683 + }, + "geometry": { + "@module": "turbomoleio.output.data", + "@class": "GeometryData", + "@version": "1.3.0", + "center_of_mass": [ + 0.0, + 0.0, + -0.60378908 + ], + "center_of_charge": [ + 0.0, + 0.0, + -0.50790525 + ], + "molecule": { + "@module": "pymatgen.core.structure", + "@class": "Molecule", + "charge": 0.0, + "spin_multiplicity": 1, + "sites": [ + { + "name": "O", + "species": [ + { + "element": "O", + "occu": 1 + } + ], + "xyz": [ + 0.0, + 0.0, + -0.38395982917561094 + ], + "properties": {} + }, + { + "name": "H", + "species": [ + { + "element": "H", + "occu": 1 + } + ], + "xyz": [ + 0.7499151287230262, + 0.0, + 0.19197991458780547 + ], + "properties": {} + }, + { + "name": "H", + "species": [ + { + "element": "H", + "occu": 1 + } + ], + "xyz": [ + -0.7499151287230262, + 0.0, + 0.19197991458780547 + ], + "properties": {} + } + ] + } + }, + "basis": { + "@module": "turbomoleio.output.data", + "@class": "BasisData", + "@version": "1.3.0", + "basis_per_specie": { + "o": "def-SV(P)", + "h": "def-SV(P)" + }, + "aux_basis_per_specie": {}, + "number_scf_basis_func": 18, + "number_scf_aux_basis_func": null + }, + "symmetry": { + "@module": "turbomoleio.output.data", + "@class": "SymmetryData", + "@version": "1.3.0", + "symbol": "c1", + "n_reps": 1, + "reps": [ + "a" + ] + }, + "cosmo": null, + "run": { + "@module": "turbomoleio.output.data", + "@class": "RunData", + "@version": "1.3.0", + "host": "frontal3", + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:22:17.312000" + }, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:22:23.137000" + }, + "cpu_time": 0.37, + "wall_time": 5.89 + }, + "tm": { + "@module": "turbomoleio.output.data", + "@class": "TurbomoleData", + "@version": "1.3.0", + "version": "7.6", + "build": null, + "executable": "ricc2" + } +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/rimp2/h2o_std_mp2/ref_parser.json b/turbomoleio/testfiles/outputs/TM_v7.6/rimp2/h2o_std_mp2/ref_parser.json new file mode 100644 index 0000000..77687fa --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/rimp2/h2o_std_mp2/ref_parser.json @@ -0,0 +1,155 @@ +{ + "all_done": true, + "header": { + "executable": "ricc2", + "host": "frontal3", + "tm_version": "7.6", + "tm_build": null, + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:22:17.312000" + } + }, + "centers": { + "center_of_mass": [ + 0.0, + 0.0, + -0.60378908 + ], + "center_of_charge": [ + 0.0, + 0.0, + -0.50790525 + ] + }, + "coordinates": { + "coords": [ + [ + 0.0, + 0.0, + -0.72557892 + ], + [ + 1.41713421, + 0.0, + 0.36278946 + ], + [ + -1.41713421, + 0.0, + 0.36278946 + ] + ], + "species": [ + "o", + "h", + "h" + ], + "charges": [ + 8.0, + 1.0, + 1.0 + ], + "isotopes": [ + 0, + 0, + 0 + ] + }, + "basis": { + "basis_per_specie": { + "o": "def-SV(P)", + "h": "def-SV(P)" + }, + "aux_basis_per_specie": {}, + "number_scf_basis_func": 18, + "number_scf_aux_basis_func": null + }, + "symmetry": { + "symbol": "c1", + "n_reps": 1, + "reps": [ + "a" + ] + }, + "cosmo_header": null, + "density_functional_data": null, + "rij_info": null, + "dftd": null, + "pre_scf_run": null, + "scf_iterations": null, + "scf_energies": null, + "cosmo_results": null, + "electrostatic_moments": null, + "timings": { + "cpu_time": 0.37, + "wall_time": 5.89, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:22:23.137000" + } + }, + "s2": null, + "is_uhf": false, + "fermi": null, + "integral": { + "integral_neglect_threshold": 1e-08, + "thize": 1e-05, + "thime": 5 + }, + "pre_escf_run": null, + "escf_iterations": null, + "escf_gs_total_en": null, + "escf_excitations": null, + "rdgrad_memory": null, + "gradient": { + "gradients": [ + [ + 0.0, + 8.110119e-14, + 0.02753525 + ], + [ + -0.02103091, + -3.793611e-14, + -0.01376763 + ], + [ + 0.02103091, + -4.316508e-14, + -0.01376763 + ] + ], + "dielectric": [ + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ], + [ + 0.0, + 0.0, + 0.0 + ] + ] + }, + "egrad_excited_state": null, + "statpt_info": null, + "relax_info": null, + "relax_gradient_values": null, + "relax_conv_info": null, + "aoforce_numerical_integration": null, + "aoforce_analysis": null, + "mp2_results": { + "energy": -76.1252418683 + }, + "riper_scf_energies": null, + "periodicity_data": null +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/rimp2/h2o_std_mp2/rimp2.log b/turbomoleio/testfiles/outputs/TM_v7.6/rimp2/h2o_std_mp2/rimp2.log new file mode 100644 index 0000000..98fc7ee --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/rimp2/h2o_std_mp2/rimp2.log @@ -0,0 +1,561 @@ + + ricc2 (frontal3) : TURBOMOLE rev. V7-6 19 Oct 2021 at 10:10:11 compiled Oct 19th 2021 + Copyright (C) 2021 TURBOMOLE GmbH, Karlsruhe + + + 2023-01-25 00:22:17.312 + + + + R I C C 2 - PROGRAM + + the quantum chemistry groups + at the universities in + Karlsruhe & Bochum + Germany + + + + *-----------------------------------------------------------------------* + | program will use 1 thread(s) | + *-----------------------------------------------------------------------* + + + +--------------------------------------------------+ + | Atomic coordinate, charge and isotop information | + +--------------------------------------------------+ + + atomic coordinates atom charge isotop + 0.00000000 0.00000000 -0.72557892 o 8.000 0 + 1.41713421 0.00000000 0.36278946 h 1.000 0 + -1.41713421 0.00000000 0.36278946 h 1.000 0 + + center of nuclear mass : 0.00000000 0.00000000 -0.60378908 + center of nuclear charge: 0.00000000 0.00000000 -0.50790525 + + ************************************************************************* + ridft_rimp2 + ************************************************************************* + + + + +--------------------------------------------------+ + | basis set information | + +--------------------------------------------------+ + + we will work with the 1s 3p 5d 7f 9g ... basis set + ...i.e. with spherical basis functions... + + type atoms prim cont basis + --------------------------------------------------------------------------- + o 1 24 14 def-SV(P) [3s2p1d|7s4p1d] + h 2 4 2 def-SV(P) [2s|4s] + --------------------------------------------------------------------------- + total: 3 32 18 + --------------------------------------------------------------------------- + + total number of primitive shells : 16 + total number of contracted shells : 10 + total number of cartesian basis functions : 19 + total number of SCF-basis functions : 18 + + + symmetry group of the molecule : c1 + + the group has the following generators : + c1(z) + + 1 symmetry operations found + + there are 1 real representations : a + + + ========================================================================= + + running in rimp2 compatibility mode + + + restricted closed shell calculation for the wavefunction models: + MP2 - Second Order Moeller Plesset PT + + + global parameters for ricc2 program: + + hard restart (reuse of interm.) : disabled + soft restart (reuse of vectors) : disabled + threshold for vector function : 0.100000E-05 + convergence threshold energy : 0.100000E-06 + linear dependence threshold : 0.100000E-13 + global print level : 1 + maximum number of iterations : 200 + maximum number DIIS vectors : 10 + max. dim. of reduced space : 100 + core memory limit (MB) : 500 + + + this is a ground state geometry optimization run at the MP2 level + + Scratch Directory : + + + ========================================================================= + + der. integral neglect threshold : 0.10E-07 + integral neglect threshold : 0.18E-09 + integral storage threshold THIZE : 0.10E-04 + integral storage threshold THIME : 5 + + + +---------------------------------------------+ + | RI-SCF/CPHF auxiliary basis set information | + +---------------------------------------------+ + + we will work with the 1s 3p 5d 7f 9g ... basis set + ...i.e. with spherical basis functions... + + type atoms prim cont basis + --------------------------------------------------------------------------- + o 1 97 77 def-SV(P) [10s8p4d2f1g|14s10p6d2f1g] + h 2 20 18 def-SV(P) [2s2p2d|4s2p2d] + --------------------------------------------------------------------------- + total: 3 137 113 + --------------------------------------------------------------------------- + + total number of primitive shells : 41 + total number of contracted shells : 37 + total number of cartesian basis functions : 133 + total number of SCF-basis functions : 113 + + + +------------------------------------------+ + | Auxiliary basis set information | + +------------------------------------------+ + + we will work with the 1s 3p 5d 7f 9g ... basis set + ...i.e. with spherical basis functions... + + type atoms prim cont basis + --------------------------------------------------------------------------- + o 1 72 48 def-SV(P) [6s5p4d1f|8s6p5d3f] + h 2 23 14 def-SV(P) [3s2p1d|4s3p2d] + --------------------------------------------------------------------------- + total: 3 118 76 + --------------------------------------------------------------------------- + + total number of primitive shells : 31 + total number of contracted shells : 28 + total number of cartesian basis functions : 85 + total number of SCF-basis functions : 76 + + + maximum number of shells which are related by symmetry : 1 + + + The symmetry information takes 1 MB + +*---------------------------------------------------------------------* +| simplified C1 algorithm will be applied | +*---------------------------------------------------------------------* + MOs are in ASCII format ! + + + reading orbital data $scfmo from file mos + orbital characterization : scfconv=7 + time elapsed for calculating density matrices : 0.001 sec + + + + +--------------------------------------------+ + | list of orbitals that will be kept frozen: | + +--------------------------------------------+ + | irrep index energy occ/vir | + +--------------------------------------------+ + | a 1 -20.5401 occupied | + +--------------------------------------------+ + + + + Molecular Orbital Statistic: + ============================ + + ----------------------------- + orbitals in total: + ----------------------------- + frozen occupied : 1 + active occupied : 4 + active virtual : 13 + frozen virtual : 0 + all together : 18 + ----------------------------- + + + time in riccmos cpu: 0.00 sec wall: 0.11 sec ratio: 0.0 + + total memory allocated for calculation of (Q|P)**(-1/2) : 1 MiB + + + calculation of (P|Q) ... + time in lp2sym cpu: 0.00 sec wall: 0.00 sec ratio: 0.0 + + + calculation of the Cholesky decomposition of (P|Q)**(-1) ... + time in invmetri cpu: 0.00 sec wall: 0.05 sec ratio: 0.1 + + threshold for RMS(d[D]) in SCF was : 0.10E-06 + integral neglect threshold : 0.18E-09 + derivative integral neglect threshold : 0.10E-07 + + + setting up bound for integral derivative estimation + + increment for numerical differentiation : 0.00050000 + + ========================================================================= + + Energy of reference wave function is -75.9382746049200 + Maximum orbital residual is 0.4980137546745E-05 + + + Number of symmetry-nonredundant auxiliary basis functions: 76 + + Block lengths for integral files: + frozen occupied (BOI): 1 MiB + active occupied (BJI): 1 MiB + active virtual (BAI): 1 MiB + frozen virtual (BGI): 0 MiB + general (BTI): 1 MiB + + ========================================================================= + + + + A RI-SCF based gradient calculation will be done. + A "jkbas" type auxiliary basis is used for RI-SCF and/or RI-CPHF. + + The semi-canonical algorithm will be used for densities + + + ======== CC DENSITY MODULE ======== + + current wave-function model: MP2 + + calculating CC ground state density + + a semicanonical algorithm will be used when possible + + density nr. cpu/min wall/min L R + ------------------------------------------------------ + 1 0.00 0.00 L0 R0 + ------------------------------------------------------ + time in cc_1den cpu: 0.01 sec wall: 0.17 sec ratio: 0.1 + + reading orbital data $scfmo from file mos + orbital characterization : scfconv=7 + + EMP2 : -76.125241868255 + EMP2 from traces: -76.125241868255 + Delta : 0.000000000000 + + -------------------------------------------------------------------------- + + Solving RI-CPHF equations using a "jkbas" type auxiliary basis + + + ======== LINEAR CC RESPONSE SOLVER ======== + + threshold for convergence: 1.00E-05 + maximum number of simultaneous Jacobi matrix transformations: 1 + + summary of start vectors generation: + ------------------------------------------- + type of solution vectors : l0o + symmetry : a + number of vectors requested : 1 + number of vectors generated : 1 + ------------------------------------------- + + + Iter #Vectors time (min) max. residual + -------------------------------------------- + 1 1 0.01 0.16E+00 ( 1) + 2 1 0.01 0.41E-01 ( 1) + 3 1 0.01 0.77E-02 ( 1) + 4 1 0.01 0.13E-02 ( 1) + 5 1 0.01 0.29E-03 ( 1) + 6 1 0.01 0.47E-04 ( 1) + 7 1 0.01 0.88E-05 ( 1) + -------------------------------------------- + converged in 7 iterations + + Total time 0.05 minutes + + + =========================================== + + + -------------------------------------------------------------------------- + + 1e-integral 1st. derivatives will be neglected if expon. factor < 0.100000E-11 + + + + +--------------------------------------------------------------------+ + | MP2 unrelaxed natural orbital occupation numbers | + +--------------------------------------------------------------------+ + | natural orb. | occupation numbers | + +---------------+----------------------------------------------------+ + | a | | + | 1 - 5 | 2.0000 1.9871 1.9756 1.9727 1.9717 | + | 6 - 10 | 0.0227 0.0210 0.0173 0.0107 0.0047 | + | 11 - 14 | 0.0043 0.0035 0.0034 0.0033 | + +---------------+----------------------------------------------------+ + natural orbitals with occ < 0.10E-02 are not shown + + Maximum change in occupation number: + occupied : -1.41 % ( 5 a ) + virtual : 1.14 % ( 6 a ) + + + +--------------------------------------------------------------------+ + | MP2 relaxed natural orbital occupation numbers | + +--------------------------------------------------------------------+ + | natural orb. | occupation numbers | + +---------------+----------------------------------------------------+ + | a | | + | 1 - 5 | 2.0000 1.9871 1.9756 1.9729 1.9720 | + | 6 - 10 | 0.0227 0.0210 0.0172 0.0107 0.0047 | + | 11 - 14 | 0.0043 0.0035 0.0034 0.0033 | + +---------------+----------------------------------------------------+ + natural orbitals with occ < 0.10E-02 are not shown + + Maximum change in occupation number: + occupied : -1.40 % ( 5 a ) + virtual : 1.13 % ( 6 a ) + + + ************************************************************** + * * + *<<<<<<<<<< GROUND STATE FIRST-ORDER PROPERTIES >>>>>>>>>>>* + * * + ************************************************************** + + + ------------------------------------------------ + Method : MP2 + Total Energy : -76.1252418683 + ------------------------------------------------ + + + ------------------------------------------------ + moments of inertia + 2.121 4.049 6.169 in a.u. + + rotational constants + 28.38596 14.86944 9.75793 in cm**(-1) + ------------------------------------------------ + + + NOTE: unrelaxed properties printed below refer to the MP1 wavefunction and + are only correct through first order in the fluctuation potential! + + +===========================================================================+ + | OPERATOR | EXPECTAT. VALUE | ELECTRONIC CONT. | NUCLEAR CONTRIB. | + +==================+==================+==================+==================+ + | | | | | + | xdiplen (unrel) | 0.00000000 | 0.00000000 | 0.00000000 | + | xdiplen (relax) | 0.00000000 | 0.00000000 | 0.00000000 | + | | | | | + | ydiplen (unrel) | -0.00000000 | -0.00000000 | 0.00000000 | + | ydiplen (relax) | -0.00000000 | -0.00000000 | 0.00000000 | + | | | | | + | zdiplen (unrel) | 0.88533481 | 5.96438727 | -5.07905247 | + | zdiplen (relax) | 0.88126361 | 5.96031608 | -5.07905247 | + | | | | | + | xxqudlen (unrel) | -3.18196295 | -7.19850168 | 4.01653873 | + | xxqudlen (relax) | -3.21009242 | -7.22663115 | 4.01653873 | + | | | | | + | xyqudlen (unrel) | -0.00000000 | -0.00000000 | 0.00000000 | + | xyqudlen (relax) | -0.00000000 | -0.00000000 | 0.00000000 | + | | | | | + | xzqudlen (unrel) | 0.00000000 | 0.00000000 | 0.00000000 | + | xzqudlen (relax) | 0.00000000 | 0.00000000 | 0.00000000 | + | | | | | + | yyqudlen (unrel) | -5.32024241 | -5.32024241 | 0.00000000 | + | yyqudlen (relax) | -5.34280036 | -5.34280036 | 0.00000000 | + | | | | | + | yzqudlen (unrel) | 0.00000000 | 0.00000000 | 0.00000000 | + | yzqudlen (relax) | 0.00000000 | 0.00000000 | 0.00000000 | + | | | | | + | zzqudlen (unrel) | -5.41001427 | -9.88496486 | 4.47495059 | + | zzqudlen (relax) | -5.42570576 | -9.90065635 | 4.47495059 | + | | | | | + +===========================================================================+ + + + Analysis of relaxed properties: + =============================== + + + dipole moment: + -------------- + + x 0.00000000 + y -0.00000000 + z 0.88126361 + + | dipole moment | = 0.88126361 a.u. = 2.23994866 debye + + + traceless quadrupole tensor: + ---------------------------- + + x y z + + x 2.17416064 -0.00000000 0.00000000 + y -1.02490127 0.00000000 + z -1.14925938 + + + principal axes of tensor: + + x' = ( 1.0000000, 0.0000000, 0.0000000 ) + y' = ( 0.0000000, 1.0000000, 0.0000000 ) + z' = ( -0.0000000, 0.0000000, 1.0000000 ) + + < Q(x'x') > = 2.17416064 a.u. + < Q(y'y') > = -1.02490127 a.u. + < Q(z'z') > = -1.14925938 a.u. + + + second moment of electron density: + ---------------------------------- + + x y z + + x 7.22663115 0.00000000 -0.00000000 + y 5.34280036 -0.00000000 + z 9.90065635 + + + principal axes of tensor: + + x' = ( 1.0000000, 0.0000000, 0.0000000 ) + y' = ( 0.0000000, 1.0000000, 0.0000000 ) + z' = ( 0.0000000, 0.0000000, 1.0000000 ) + + < x'x'> = 7.22663115 a.u. + < y'y'> = 5.34280036 a.u. + < z'z'> = 9.90065635 a.u. + + Isotropic second moment: alpha = 7.49002929 a.u. + + Anisotropy of second moment: beta = 3.96694344 a.u. + + + -------------------------------------------------------------------------- + + + Analysis of unrelaxed properties: + ================================= + + + dipole moment: + -------------- + + x 0.00000000 + y -0.00000000 + z 0.88533481 + + | dipole moment | = 0.88533481 a.u. = 2.25029660 debye + + + traceless quadrupole tensor: + ---------------------------- + + x y z + + x 2.18316539 -0.00000000 0.00000000 + y -1.02425380 0.00000000 + z -1.15891159 + + + principal axes of tensor: + + x' = ( 1.0000000, 0.0000000, 0.0000000 ) + y' = ( 0.0000000, 1.0000000, 0.0000000 ) + z' = ( -0.0000000, 0.0000000, 1.0000000 ) + + < Q(x'x') > = 2.18316539 a.u. + < Q(y'y') > = -1.02425380 a.u. + < Q(z'z') > = -1.15891159 a.u. + + + second moment of electron density: + ---------------------------------- + + x y z + + x 7.19850168 0.00000000 -0.00000000 + y 5.32024241 -0.00000000 + z 9.88496486 + + + principal axes of tensor: + + x' = ( 1.0000000, 0.0000000, 0.0000000 ) + y' = ( 0.0000000, 1.0000000, 0.0000000 ) + z' = ( 0.0000000, 0.0000000, 1.0000000 ) + + < x'x'> = 7.19850168 a.u. + < y'y'> = 5.32024241 a.u. + < z'z'> = 9.88496486 a.u. + + Isotropic second moment: alpha = 7.46790298 a.u. + + Anisotropy of second moment: beta = 3.97376606 a.u. + + + ------------------------------ + total gradient of MP2 energy + ------------------------------ + + ------------------------------------------------ + cartesian gradient of the energy (hartree/bohr) + ------------------------------------------------ + + ATOM 1 o 2 h 3 h +dE/dx 0.0000000D+00 -0.2103091D-01 0.2103091D-01 +dE/dy 0.8110119D-13 -0.3793611D-13 -0.4316508D-13 +dE/dz 0.2753525D-01 -0.1376763D-01 -0.1376763D-01 + + resulting FORCE (fx,fy,fz) = (-.533D-14,-.252D-28,-.267D-12) + resulting MOMENT (mx,my,mz) = (0.883D-13,0.270D-13,0.741D-14) + + + ********************************************************************** + |maximum component of gradient| : 0.27535250E-01 (atom 1 o ) + gradient norm : 0.44965355E-01 + ********************************************************************** + + *** orbital-relaxed dipole moment written to *** + + + : data group $grad is missing + + *** cartesian gradients written onto *** + + ============================================================================== + + Exporting ground state density + + + ------------------------------------------------------------------------ + total cpu-time : 0.37 seconds + total wall-time : 5.89 seconds + ------------------------------------------------------------------------ + + **** ricc2 : all done **** + + + 2023-01-25 00:22:23.137 + diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/riper/bulk_LiH/ref_output.json b/turbomoleio/testfiles/outputs/TM_v7.6/riper/bulk_LiH/ref_output.json new file mode 100644 index 0000000..7a51d3a --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/riper/bulk_LiH/ref_output.json @@ -0,0 +1,163 @@ +{ + "@module": "turbomoleio.output.files", + "@class": "ScfOutput", + "@version": "1.3.0", + "dft": null, + "scf": null, + "energies": { + "@module": "turbomoleio.output.data", + "@class": "ScfEnergiesData", + "@version": "1.3.0", + "total_energy": -8.3919628749, + "kinetic_energy": 7.7319401563, + "potential_energy": null, + "virial_theorem": null, + "wavefunction_norm": null, + "coulomb_energy": -13.8864707664, + "xc_energy": -2.2374322648, + "ts_energy": -0.0, + "free_energy": -8.3919628749, + "sigma0_energy": -8.3919628749 + }, + "electrostatic": null, + "geometry": { + "@module": "turbomoleio.output.data", + "@class": "GeometryData", + "@version": "1.3.0", + "center_of_mass": [ + 0.67796736, + 0.39142464, + 0.27677902 + ], + "center_of_charge": [ + 1.33629628, + 0.77151102, + 0.54554067 + ], + "molecule": { + "@module": "pymatgen.core.structure", + "@class": "Molecule", + "charge": 0.0, + "spin_multiplicity": 1, + "sites": [ + { + "name": "Li", + "species": [ + { + "element": "Li", + "occu": 1 + } + ], + "xyz": [ + 0.0, + 0.0, + 0.0 + ], + "properties": {} + }, + { + "name": "H", + "species": [ + { + "element": "H", + "occu": 1 + } + ], + "xyz": [ + 2.8285501588535893, + 1.6330641936863424, + 1.1547507660307879 + ], + "properties": {} + } + ] + } + }, + "basis": null, + "run": { + "@module": "turbomoleio.output.data", + "@class": "RunData", + "@version": "1.3.0", + "host": "frontal3", + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:22:48.392000" + }, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:23:18.466000" + }, + "cpu_time": 29.48, + "wall_time": 30.14 + }, + "tm": { + "@module": "turbomoleio.output.data", + "@class": "TurbomoleData", + "@version": "1.3.0", + "version": "7.6", + "build": null, + "executable": "riper" + }, + "cosmo": null, + "spin": { + "@module": "turbomoleio.output.data", + "@class": "SpinData", + "@version": "1.3.0", + "unrestricted": false, + "s2": null + }, + "integral": null, + "smearing": null, + "symmetry": null, + "periodicity": { + "@module": "turbomoleio.output.data", + "@class": "PeriodicityData", + "@version": "1.3.0", + "periodicity": 3, + "lattice_params": [ + 2.8285501588535893, + 2.8285501588535893, + 2.8285501588535893, + 60.0, + 60.0, + 60.0 + ], + "shortest_interatomic_distance": 2.0000781863289787, + "direct_space_vectors": [ + [ + 2.8285501588535893, + 0.0, + 0.0 + ], + [ + 1.4142750820726806, + 2.4495962931753996, + 0.0 + ], + [ + 1.4142750820726806, + 0.8165320994890573, + 2.3095015320615757 + ] + ], + "reciprocal_space_vectors": [ + [ + 2.221344845886552, + -1.2824940417254702, + -0.9068602353096522 + ], + [ + 0.0, + 2.5649880834509404, + -0.9068602353096522 + ], + [ + 0.0, + 0.0, + 2.7205807059289566 + ] + ] + } +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/riper/bulk_LiH/ref_parser.json b/turbomoleio/testfiles/outputs/TM_v7.6/riper/bulk_LiH/ref_parser.json new file mode 100644 index 0000000..2c9fa61 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/riper/bulk_LiH/ref_parser.json @@ -0,0 +1,147 @@ +{ + "all_done": true, + "header": { + "executable": "riper", + "host": "frontal3", + "tm_version": "7.6", + "tm_build": null, + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:22:48.392000" + } + }, + "centers": { + "center_of_mass": [ + 0.67796736, + 0.39142464, + 0.27677902 + ], + "center_of_charge": [ + 1.33629628, + 0.77151102, + 0.54554067 + ] + }, + "coordinates": { + "coords": [ + [ + 0.0, + 0.0, + 0.0 + ], + [ + 5.34518513, + 3.08604407, + 2.18216269 + ] + ], + "species": [ + "li", + "h" + ], + "charges": [ + 3.0, + 1.0 + ], + "isotopes": [ + 0, + 0 + ] + }, + "basis": null, + "symmetry": null, + "cosmo_header": null, + "density_functional_data": null, + "rij_info": null, + "dftd": null, + "pre_scf_run": null, + "scf_iterations": null, + "scf_energies": null, + "cosmo_results": null, + "electrostatic_moments": null, + "timings": { + "cpu_time": 29.48, + "wall_time": 30.14, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:23:18.466000" + } + }, + "s2": null, + "is_uhf": false, + "fermi": null, + "integral": null, + "pre_escf_run": null, + "escf_iterations": null, + "escf_gs_total_en": null, + "escf_excitations": null, + "rdgrad_memory": null, + "gradient": null, + "egrad_excited_state": null, + "statpt_info": null, + "relax_info": null, + "relax_gradient_values": null, + "relax_conv_info": null, + "aoforce_numerical_integration": null, + "aoforce_analysis": null, + "mp2_results": { + "energy": null + }, + "riper_scf_energies": { + "total_energy": -8.3919628749, + "kinetic_energy": 7.7319401563, + "coulomb_energy": -13.8864707664, + "xc_energy": -2.2374322648, + "ts_energy": -0.0, + "free_energy": -8.3919628749, + "sigma0_energy": -8.3919628749 + }, + "periodicity_data": { + "periodicity": 3, + "tm_lattice_params": [ + 5.34518513, + 5.34518513, + 5.34518513, + 60.0, + 60.0, + 60.0 + ], + "shortest_interatomic_distance": 3.7796, + "direct_space_vectors": [ + [ + 5.34518513, + 0.0, + 0.0 + ], + [ + 2.67259257, + 4.62906611, + 0.0 + ], + [ + 2.67259257, + 1.54302204, + 4.36432538 + ] + ], + "reciprocal_space_vectors": [ + [ + 1.17548507, + -0.67866662, + -0.47988977 + ], + [ + 0.0, + 1.35733324, + -0.47988977 + ], + [ + 0.0, + 0.0, + 1.43966931 + ] + ] + } +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/riper/bulk_LiH/riper.log b/turbomoleio/testfiles/outputs/TM_v7.6/riper/bulk_LiH/riper.log new file mode 100644 index 0000000..28e2b60 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/riper/bulk_LiH/riper.log @@ -0,0 +1,460 @@ + + riper (frontal3) : TURBOMOLE rev. V7-6 19 Oct 2021 at 10:10:11 compiled Oct 19th 2021 + Copyright (C) 2021 TURBOMOLE GmbH, Karlsruhe + + + 2023-01-25 00:22:48.392 + + Number of MKL threads: 1 + + ************************************************************************* + dscf + ************************************************************************* + + + + assign orbital basis set names as defaults + read basis sets from /projects/matgenix/COMMON/software/TURBOMOLE/evaluation_license/TURBOMOLE_76/jbasen/ + (basis sets have been saved in file auxbasis) + + ************************************************************************* + ************************************************************************* + *** _ _ _ _ *** + *** | |_ _ _ _ _| |__ ___ _ __ ___| |___( )___ *** + *** | _| || | '_| '_ \/ _ \ ' \/ _ \ / -_)/(_-< *** + *** \__|\_,_|_| |_.__/\___/_|_|_\___/_\___| /__/ *** + *** ___ ___ *** + *** // ) ) / / // ) ) // / / // ) ) *** + *** //___/ / / / //___/ / //____ //___/ / *** + *** / ___ ( / / / ____ / / ____ / ___ ( *** + *** // | | / / // // // | | *** + *** // | | __/ /___ // //____/ / // | | *** + *** *** + ************************************************************************* + ************************************************************************* + *************************** PROGRAM RIPER ******************************* + ****** Density Functional Theory with periodic boundary conditions ****** + ****** ****** + ****** Developed by the groups in Jena (M. Sierka) ****** + ****** and Munich (A. Burow) ****** + ************************************************************************* + + + References: + + (1) General implementation: + R. Lazarski, A. M. Burow, M. Sierka + Density Functional Theory for Molecular and Periodic Systems Using + Density Fitting and Continuous Fast Multipole Methods + J. Chem. Theory Comput. 2015, 11, 3029-3041 + R. Lazarski, A. M. Burow, L. Grajciar, M. Sierka + Density Functional Theory for Molecular and Periodic Systems Using + Density Fitting and Continuous Fast Multipole Methods: Analytical + Gradients + J. Comput. Chem. 2016, 57, 2518–2526 + (2) DFT implementation: + A. M. Burow, M. Sierka + Linear Scaling Hierarchical Integration Scheme For the + Exchange-Correlation Term in Molecular and Periodic Systems + J. Chem. Theory Comput. 2011, 7, 3097-3104 + (3) RI/DF approximation: + A. M. Burow, M. Sierka, F. Mohamed + Resolution of Identity Approximation for the Coulomb Term in + Molecular and Periodic Systems + J. Chem. Phys. 2009, 131, 214101/1-214101/6 + (4) Low-Memory Iterative Density Fitting (LMIDF) method: + L. Grajciar + Low-Memory Iterative Density Fitting + J. Comput. Chem. 2015, 36, 1521-1535 + + + + +--------------------------------------------------+ + | Atomic coordinate, charge and isotop information | + +--------------------------------------------------+ + + atomic coordinates atom charge isotop + 0.00000000 0.00000000 0.00000000 li 3.000 0 + 5.34518513 3.08604407 2.18216269 h 1.000 0 + + center of nuclear mass : 0.67796736 0.39142464 0.27677902 + center of nuclear charge: 1.33629628 0.77151102 0.54554067 + + + +--------------------------------------------------+ + | Periodic system found: PBC structure information | + +--------------------------------------------------+ + + Cell parameters (au,deg.) + +------------------------------------------------------------------------- + | |a| |b| |c| alpha beta gamma | + +------------------------------------------------------------------------- + 5.34518513 5.34518513 5.34518513 60.000 60.000 60.000 + +------------------------------------------------------------------------- + + Volume of the unit cell (au): 107.9874 + + Shortest interatomic distance (bohr): 3.7796 + + Periodicity in 3 dimensions + + Direct space cell vectors (au): + a 5.34518513 0.00000000 0.00000000 + b 2.67259257 4.62906611 0.00000000 + c 2.67259257 1.54302204 4.36432538 + + Reciprocal space cell vectors (au): + a 1.17548507 -0.67866662 -0.47988977 + b 0.00000000 1.35733324 -0.47988977 + c 0.00000000 0.00000000 1.43966931 + + +--------------------------------------------------+ + | Fractional crystal coordinates | + +--------------------------------------------------+ + + atom fractional coordinates + li 0.00000000 0.00000000 0.00000000 + h 0.50000000 0.50000000 0.50000000 + + * BASIS SET information: + + +--------------------------------------------------+ + | basis set information | + +--------------------------------------------------+ + + we will work with the 1s 3p 5d 7f 9g ... basis set + ...i.e. with spherical basis functions... + + type atoms prim cont basis + --------------------------------------------------------------------------- + li 1 13 6 SV(P) [3s1p|7s2p] + h 1 4 2 SV(P) [2s|4s] + --------------------------------------------------------------------------- + total: 2 17 8 + --------------------------------------------------------------------------- + + total number of primitive shells : 13 + total number of contracted shells : 6 + total number of cartesian basis functions : 8 + total number of SCF-basis functions : 8 + + + * AUXILIARY RI-J BASIS SET information: + + +--------------------------------------------------+ + | basis set information | + +--------------------------------------------------+ + + we will work with the 1s 3p 5d 7f 9g ... basis set + ...i.e. with spherical basis functions... + + type atoms prim cont basis + --------------------------------------------------------------------------- + li 1 31 29 SV(P) [6s2p2d1f|8s2p2d1f] + h 1 10 5 SV(P) [2s1p|4s2p] + --------------------------------------------------------------------------- + total: 2 41 34 + --------------------------------------------------------------------------- + + total number of primitive shells : 19 + total number of contracted shells : 14 + total number of cartesian basis functions : 39 + total number of SCF-basis functions : 34 + + + +--------------------------------------------------+ + | K-POINT MESH | + +--------------------------------------------------+ + + Total number of k points used for density integration: 1 + Number of symmetry distinct k points used: 1 + + Reciprocal space cell vector (au): + a 1.17548507 -0.67866662 -0.47988977 + Number of k-points along this vector: 1 + Fractional coordinates: + 0.0000 + + Reciprocal space cell vector (au): + b 0.00000000 1.35733324 -0.47988977 + Number of k-points along this vector: 1 + Fractional coordinates: + 0.0000 + + Reciprocal space cell vector (au): + c 0.00000000 0.00000000 1.43966931 + Number of k-points along this vector: 1 + Fractional coordinates: + 0.0000 + + +--------------------------------------------------+ + | Summary of SCF and related options | + +--------------------------------------------------+ + + Energy calculation only + Diagonalization of overlap matrices + Threshold for neglect of eigenvalues of overlap matrices: 0.1000E-05 + Diagonalization method set to: 2 + Maximum number of SCF iterations included in the DIIS: 4 + Automatic orbital shift for HOMO-LUMO gap below: 0.1000E+00 + + Fractional occupation numbers with Gaussian smearing + width of the smearing: 0.1000E-01 + + +--------------------------------------------------+ + | SCREENING OF BASIS FUNCTION PRODUCTS | + +--------------------------------------------------+ + + Threshold for shell products neglect: 0.1E-07 + Tolerance for shell products extents: 0.1E-01 + The biggest integral is expected to be: 0.1E+01 + Number of {mu,nu,L} shell products: 8764 + Number of direct lattice vectors: 959 + + + +--------------------------------------------------+ + | INITIAL ORBITALS/BANDS | + +--------------------------------------------------+ + + + reading orbital data $scfmo from file mos + orbital characterization : expanded + + Diagonalization of the overlap matrix requested + Threshold for eigenvalues: 0.1000E-05 + Total number of vectors: 8 + Largest eigenvalue: 0.5744E+02 + - for the k-point: 1 + Smallest eigenvalue: -.2695E+00 + - for the k-point: 1 + Largest number of vectors: 7 + - for the k-point: 1 + Smallest number of vectors: 7 + - for the k-point: 1 + + BANDS have been orthonormalized + + +--------------------------------------------------+ + | DENSITY FUNCTIONAL THEORY | + +--------------------------------------------------+ + + DFT calculation will be performed + + B-P86 functional + exchange: LDA + Becke (B88) + correlation: LDA (VWN) + Perdew (P86) + + +--------------------------------------------------+ + | NUMERICAL INTEGRATION | + +--------------------------------------------------+ + + Will use smaller grid during SCF iterations and a grid + of size 3 for the last iteration. + + Integration of exchange-correlation term is performed with + Stratmann/Scuseria renormalization. + Specified sharpness parameter is .64000D+00. + Calculation of weight derivatives is switched OFF + Maximum number of grid points per atom: 6382 + Total number of grid points of the system: 7992 + + +--------------------------------------------------+ + | CONTINUOUS FAST MULTIPOLE METHOD | + +--------------------------------------------------+ + + Continuous Fast Multipole Method for the Coulomb term + order of multipole expansions: 3 + well-separateness criterion: 2.0000 + local multipole expansions switched on + local expansions incremented by: 2 + total number of centers: 8780 + number of octree levels: 5 + number of boxes at all levels: 1646 + max. number of NF boxes per box: 569 + length of the lowest level box: 3.6553 + length of the highest level box: 58.4840 + + Periodic boundary conditions - crystal field construction: + extent of the nuclei: 5.3452 + extent of dipole correction: 2.6726 + extent of electron density: 33.7662 + extent of auxiliary density: 10.7707 + final crystal field radius: 73.3248 + number of lattice vectors: 15395 + + RI core memory information + core memory allocated for RI integrals: 5 MB + maximum memory needed for RI integrals: 5 MB + + + *********************************************************** + * W A R N I N G ! * + *********************************************************** + * CHOLESKY DECOMPOSITION OF THE COULOMB METRICS FAILED! * + * PROBABLY DUE TO DIFFUSE AUXILIARY BASIS FUNCTIONS * + * RIPER WILL NOW PROCEED USING DIAGONALIZATION * + *********************************************************** + * W A R N I N G ! * + *********************************************************** + + FULL DIAGONALIZATION THE COULOMB METRICS MATRIX + Max. eigenvalue of PQ matrix: 0.1503E+01 + Min. eigenvalue of PQ matrix: -0.6365E-03 + Neglect threshold for eigenvectors: 0.1000E-07 + Number of eigenvectors removed: 4 + ------------------ Fractional Occupations ---------------- + Fermi level = -0.4420911334 + Electrons(/UC) = 4.0000000000 + Current HOMO-LUMO gap = 0.24998E+01 + ---------------------------------------------------------- + + +--------------------------------------------------+ + | SCF iteration 1 | + +--------------------------------------------------+ + + Number of electrons from P*S = 3.99999999999997 + + Numerical integration of the XC term: + Number of electrons = 3.99392019932569 + + ------------------ Fractional Occupations ---------------- + Fermi level = 0.0957212777 + Electrons(/UC) = 4.0000000000 + Current HOMO-LUMO gap = 0.66636E+00 + ---------------------------------------------------------- + SCF energy change = -8.381D+00 + Free energy change = -8.381D+00 + new damping factor = 0.300 + + +--------------------------------------------------+ + | KINETIC ENERGY = 7.7631202530 | + | COULOMB ENERGY = -13.8929043035 | + | EXCH. & CORR. ENERGY = -2.2511538595 | + |==================================================| + | TOTAL ENERGY = -8.3809379100 | + | T*S = -0.0000000000 | + | FREE ENERGY = -8.3809379100 | + | ENERGY (sigma->0) = -8.3809379100 | + +--------------------------------------------------+ + + + +--------------------------------------------------+ + | SCF iteration 2 | + +--------------------------------------------------+ + + Number of electrons from P*S = 3.99999999999997 + + Numerical integration of the XC term: + Number of electrons = 3.98719783830494 + + Norm of current diis error = 4.392D-01 + ------------------ Fractional Occupations ---------------- + Fermi level = -0.0760865114 + Electrons(/UC) = 4.0000000000 + Current HOMO-LUMO gap = 0.18288E+00 + ---------------------------------------------------------- + RMS of difference density = 2.510D-04 + SCF energy change = -5.466D-04 + Free energy change = -5.466D-04 + new damping factor = 0.350 + + +--------------------------------------------------+ + | KINETIC ENERGY = 7.7548859807 | + | COULOMB ENERGY = -13.8913680319 | + | EXCH. & CORR. ENERGY = -2.2450024509 | + |==================================================| + | TOTAL ENERGY = -8.3814845022 | + | T*S = -0.0000000000 | + | FREE ENERGY = -8.3814845022 | + | ENERGY (sigma->0) = -8.3814845022 | + +--------------------------------------------------+ + + + +--------------------------------------------------+ + | SCF converged - final SCF iteration | + +--------------------------------------------------+ + + Number of electrons from P*S = 3.99999999999996 + + Numerical integration of the XC term: + Number of electrons = 3.96779144333542 + + + SCF converged within 2 cycles. + + +--------------------------------------------------+ + | FINAL ENERGIES | + +--------------------------------------------------+ + | KINETIC ENERGY = 7.7319401563 | + | COULOMB ENERGY = -13.8864707664 | + | EXCH. & CORR. ENERGY = -2.2374322648 | + |==================================================| + | TOTAL ENERGY = -8.3919628749 | + | T*S = -0.0000000000 | + | FREE ENERGY = -8.3919628749 | + | ENERGY (sigma->0) = -8.3919628749 | + +--------------------------------------------------+ + + + ------------------ Fermi Level Statistics ---------------- + Lowest unoccupied band = 0.049319 + Highest occupied band = -0.133559 + Band gap = 0.182877 + Band gap middle = -0.042120 + Fermi level = -0.076087 + ---------------------------------------------------------- + + : there is no data group $energy + + + : $end is missing + + + orbitals $scfmo will be written to file mos + + ------------------------------------------------------------------------ + RIPER profiling cpu wall ratio + ------------------------------------------------------------------------ + module sec % sec % + ------------------------------------------------------------------------ + RIPER 29.5 100.00 30.1 100.00 1.0 + Preliminaries 0.1 0.23 0.4 1.23 0.2 + BANDS init 0.0 0.02 0.1 0.18 0.1 + DFT grid setup 6.2 20.93 6.2 20.48 1.0 + DFT system grid 6.1 20.85 6.1 20.40 1.0 + CFMM preliminaries 5.2 17.56 5.2 17.18 1.0 + PQ matrix 0.0 0.14 0.0 0.14 1.0 + PQ CNF 0.0 0.14 0.0 0.14 1.0 + SCF 18.0 61.11 18.3 60.76 1.0 + jmat nuclear 1.1 3.63 1.1 3.55 1.0 + SCF looop 16.9 57.44 17.1 56.81 1.0 + XC matrix 1.5 5.06 1.5 4.95 1.0 + Coulomb total 15.4 52.35 15.4 51.21 1.0 + gamma vector 14.2 48.04 14.2 47.00 1.0 + gamma CNF FF 0.2 0.77 0.2 0.76 1.0 + gamma CNF FF p. 2 0.2 0.75 0.2 0.73 1.0 + gamma CNF NF 13.9 47.25 13.9 46.22 1.0 + gamma CNF NF p. 1 12.9 43.91 12.9 42.96 1.0 + gamma CNF NF p. 2 1.0 3.34 1.0 3.27 1.0 + Coulomb matrix 1.3 4.31 1.3 4.21 1.0 + jmat CNF FF 0.2 0.84 0.2 0.82 1.0 + jmat CNF FF p. 2 0.2 0.82 0.2 0.80 1.0 + elec. en. aux 1.0 3.36 1.0 3.29 1.0 + DIIS 0.0 0.01 0.1 0.40 0.0 + MO dump 0.0 0.02 0.1 0.34 0.1 + mos dump 0.0 0.01 0.0 0.16 0.1 + ------------------------------------------------------------------------ + sum 145.4 493.29 147.1 488.40 1.0 + ------------------------------------------------------------------------ + + + ------------------------------------------------------------------------ + total cpu-time : 29.48 seconds + total wall-time : 30.14 seconds + ------------------------------------------------------------------------ + + **** riper : all done **** + + + 2023-01-25 00:23:18.466 + diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/riper/graphene/ref_output.json b/turbomoleio/testfiles/outputs/TM_v7.6/riper/graphene/ref_output.json new file mode 100644 index 0000000..40dc0ce --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/riper/graphene/ref_output.json @@ -0,0 +1,150 @@ +{ + "@module": "turbomoleio.output.files", + "@class": "ScfOutput", + "@version": "1.3.0", + "dft": null, + "scf": null, + "energies": { + "@module": "turbomoleio.output.data", + "@class": "ScfEnergiesData", + "@version": "1.3.0", + "total_energy": -76.2143772794, + "kinetic_energy": 75.3114096158, + "potential_energy": null, + "virial_theorem": null, + "wavefunction_norm": null, + "coulomb_energy": -140.6546428011, + "xc_energy": -10.8711440941, + "ts_energy": -0.0, + "free_energy": -76.2143772794, + "sigma0_energy": -76.2143772794 + }, + "electrostatic": null, + "geometry": { + "@module": "turbomoleio.output.data", + "@class": "GeometryData", + "@version": "1.3.0", + "center_of_mass": [ + 1.16615753, + 2.01984413, + 0.5 + ], + "center_of_charge": [ + 1.16615753, + 2.01984413, + 0.5 + ], + "molecule": { + "@module": "pymatgen.core.structure", + "@class": "Molecule", + "charge": 0.0, + "spin_multiplicity": 1, + "sites": [ + { + "name": "C", + "species": [ + { + "element": "C", + "occu": 1 + } + ], + "xyz": [ + -2.1167088436119998e-08, + 1.4251406459935192, + 0.2645886054515 + ], + "properties": {} + }, + { + "name": "C", + "species": [ + { + "element": "C", + "occu": 1 + } + ], + "xyz": [ + 1.2342080048567237, + 0.7125703256426458, + 0.2645886054515 + ], + "properties": {} + } + ] + } + }, + "basis": null, + "run": { + "@module": "turbomoleio.output.data", + "@class": "RunData", + "@version": "1.3.0", + "host": "frontal3", + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:22:29.483000" + }, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:22:47.201000" + }, + "cpu_time": 16.7, + "wall_time": 17.81 + }, + "tm": { + "@module": "turbomoleio.output.data", + "@class": "TurbomoleData", + "@version": "1.3.0", + "version": "7.6", + "build": null, + "executable": "riper" + }, + "cosmo": null, + "spin": { + "@module": "turbomoleio.output.data", + "@class": "SpinData", + "@version": "1.3.0", + "unrestricted": false, + "s2": null + }, + "integral": null, + "smearing": null, + "symmetry": null, + "periodicity": { + "@module": "turbomoleio.output.data", + "@class": "PeriodicityData", + "@version": "1.3.0", + "periodicity": 2, + "lattice_params": [ + 2.4684160308805354, + 2.4684160308805354, + 120.0 + ], + "shortest_interatomic_distance": 1.425127146682869, + "direct_space_vectors": [ + [ + 2.4684160308805354, + 0.0, + 0.0 + ], + [ + -1.2342080471909005, + 2.137710971636165, + 0.0 + ] + ], + "reciprocal_space_vectors": [ + [ + 2.545432063677638, + 1.4696059353594344, + -0.0 + ], + [ + 0.0, + 2.939211795129824, + -0.0 + ] + ] + } +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/riper/graphene/ref_parser.json b/turbomoleio/testfiles/outputs/TM_v7.6/riper/graphene/ref_parser.json new file mode 100644 index 0000000..734fdc9 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/riper/graphene/ref_parser.json @@ -0,0 +1,134 @@ +{ + "all_done": true, + "header": { + "executable": "riper", + "host": "frontal3", + "tm_version": "7.6", + "tm_build": null, + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:22:29.483000" + } + }, + "centers": { + "center_of_mass": [ + 1.16615753, + 2.01984413, + 0.5 + ], + "center_of_charge": [ + 1.16615753, + 2.01984413, + 0.5 + ] + }, + "coordinates": { + "coords": [ + [ + -4e-08, + 2.69312551, + 0.5 + ], + [ + 2.33231511, + 1.34656276, + 0.5 + ] + ], + "species": [ + "c", + "c" + ], + "charges": [ + 6.0, + 6.0 + ], + "isotopes": [ + 0, + 0 + ] + }, + "basis": null, + "symmetry": null, + "cosmo_header": null, + "density_functional_data": null, + "rij_info": null, + "dftd": null, + "pre_scf_run": null, + "scf_iterations": null, + "scf_energies": null, + "cosmo_results": null, + "electrostatic_moments": null, + "timings": { + "cpu_time": 16.7, + "wall_time": 17.81, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:22:47.201000" + } + }, + "s2": null, + "is_uhf": false, + "fermi": null, + "integral": null, + "pre_escf_run": null, + "escf_iterations": null, + "escf_gs_total_en": null, + "escf_excitations": null, + "rdgrad_memory": null, + "gradient": null, + "egrad_excited_state": null, + "statpt_info": null, + "relax_info": null, + "relax_gradient_values": null, + "relax_conv_info": null, + "aoforce_numerical_integration": null, + "aoforce_analysis": null, + "mp2_results": { + "energy": null + }, + "riper_scf_energies": { + "total_energy": -76.2143772794, + "kinetic_energy": 75.3114096158, + "coulomb_energy": -140.6546428011, + "xc_energy": -10.8711440941, + "ts_energy": -0.0, + "free_energy": -76.2143772794, + "sigma0_energy": -76.2143772794 + }, + "periodicity_data": { + "periodicity": 2, + "tm_lattice_params": [ + 4.66463026, + 4.66463026, + 120.0 + ], + "shortest_interatomic_distance": 2.6931, + "direct_space_vectors": [ + [ + 4.66463026, + 0.0, + 0.0 + ], + [ + -2.33231519, + 4.03968827, + 0.0 + ] + ], + "reciprocal_space_vectors": [ + [ + 1.34698464, + 0.77768197, + -0.0 + ], + [ + 0.0, + 1.5553639, + -0.0 + ] + ] + } +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/riper/graphene/riper.log b/turbomoleio/testfiles/outputs/TM_v7.6/riper/graphene/riper.log new file mode 100644 index 0000000..2cf448c --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/riper/graphene/riper.log @@ -0,0 +1,648 @@ + + riper (frontal3) : TURBOMOLE rev. V7-6 19 Oct 2021 at 10:10:11 compiled Oct 19th 2021 + Copyright (C) 2021 TURBOMOLE GmbH, Karlsruhe + + + 2023-01-25 00:22:29.483 + + Number of MKL threads: 1 + + ************************************************************************* + dscf + ************************************************************************* + + + + assign orbital basis set names as defaults + read basis sets from /projects/matgenix/COMMON/software/TURBOMOLE/evaluation_license/TURBOMOLE_76/jbasen/ + (basis sets have been saved in file auxbasis) + + ************************************************************************* + ************************************************************************* + *** _ _ _ _ *** + *** | |_ _ _ _ _| |__ ___ _ __ ___| |___( )___ *** + *** | _| || | '_| '_ \/ _ \ ' \/ _ \ / -_)/(_-< *** + *** \__|\_,_|_| |_.__/\___/_|_|_\___/_\___| /__/ *** + *** ___ ___ *** + *** // ) ) / / // ) ) // / / // ) ) *** + *** //___/ / / / //___/ / //____ //___/ / *** + *** / ___ ( / / / ____ / / ____ / ___ ( *** + *** // | | / / // // // | | *** + *** // | | __/ /___ // //____/ / // | | *** + *** *** + ************************************************************************* + ************************************************************************* + *************************** PROGRAM RIPER ******************************* + ****** Density Functional Theory with periodic boundary conditions ****** + ****** ****** + ****** Developed by the groups in Jena (M. Sierka) ****** + ****** and Munich (A. Burow) ****** + ************************************************************************* + + + References: + + (1) General implementation: + R. Lazarski, A. M. Burow, M. Sierka + Density Functional Theory for Molecular and Periodic Systems Using + Density Fitting and Continuous Fast Multipole Methods + J. Chem. Theory Comput. 2015, 11, 3029-3041 + R. Lazarski, A. M. Burow, L. Grajciar, M. Sierka + Density Functional Theory for Molecular and Periodic Systems Using + Density Fitting and Continuous Fast Multipole Methods: Analytical + Gradients + J. Comput. Chem. 2016, 57, 2518–2526 + (2) DFT implementation: + A. M. Burow, M. Sierka + Linear Scaling Hierarchical Integration Scheme For the + Exchange-Correlation Term in Molecular and Periodic Systems + J. Chem. Theory Comput. 2011, 7, 3097-3104 + (3) RI/DF approximation: + A. M. Burow, M. Sierka, F. Mohamed + Resolution of Identity Approximation for the Coulomb Term in + Molecular and Periodic Systems + J. Chem. Phys. 2009, 131, 214101/1-214101/6 + (4) Low-Memory Iterative Density Fitting (LMIDF) method: + L. Grajciar + Low-Memory Iterative Density Fitting + J. Comput. Chem. 2015, 36, 1521-1535 + + + + +--------------------------------------------------+ + | Atomic coordinate, charge and isotop information | + +--------------------------------------------------+ + + atomic coordinates atom charge isotop + -0.00000004 2.69312551 0.50000000 c 6.000 0 + 2.33231511 1.34656276 0.50000000 c 6.000 0 + + center of nuclear mass : 1.16615753 2.01984413 0.50000000 + center of nuclear charge: 1.16615753 2.01984413 0.50000000 + + + +--------------------------------------------------+ + | Periodic system found: PBC structure information | + +--------------------------------------------------+ + + Cell parameters (au,deg.) + +------------------------------------------------------------------------- + | |a| |b| gamma | + +------------------------------------------------------------------------- + 4.66463026 4.66463026 120.000 + +------------------------------------------------------------------------- + + Shortest interatomic distance (bohr): 2.6931 + + Periodicity in 2 dimensions + + Direct space cell vectors (au): + a 4.66463026 0.00000000 0.00000000 + b -2.33231519 4.03968827 0.00000000 + + Reciprocal space cell vectors (au): + a 1.34698464 0.77768197 -0.00000000 + b 0.00000000 1.55536390 -0.00000000 + + +--------------------------------------------------+ + | Fractional crystal coordinates | + +--------------------------------------------------+ + + atom fractional coordinates + c 0.33333333 0.66666667 0.50000000 + c 0.66666667 0.33333333 0.50000000 + + * BASIS SET information: + + +--------------------------------------------------+ + | basis set information | + +--------------------------------------------------+ + + we will work with the 1s 3p 5d 7f 9g ... basis set + ...i.e. with spherical basis functions... + + type atoms prim cont basis + --------------------------------------------------------------------------- + c 2 24 14 def-SV(P) [3s2p1d|7s4p1d] + --------------------------------------------------------------------------- + total: 2 48 28 + --------------------------------------------------------------------------- + + total number of primitive shells : 12 + total number of contracted shells : 12 + total number of cartesian basis functions : 30 + total number of SCF-basis functions : 28 + + + * AUXILIARY RI-J BASIS SET information: + + +--------------------------------------------------+ + | basis set information | + +--------------------------------------------------+ + + we will work with the 1s 3p 5d 7f 9g ... basis set + ...i.e. with spherical basis functions... + + type atoms prim cont basis + --------------------------------------------------------------------------- + c 2 39 37 def-SV(P) [6s3p3d1f|8s3p3d1f] + --------------------------------------------------------------------------- + total: 2 78 74 + --------------------------------------------------------------------------- + + total number of primitive shells : 15 + total number of contracted shells : 26 + total number of cartesian basis functions : 86 + total number of SCF-basis functions : 74 + + + +--------------------------------------------------+ + | K-POINT MESH | + +--------------------------------------------------+ + + Total number of k points used for density integration: 4 + Number of symmetry distinct k points used: 2 + + Reciprocal space cell vector (au): + a 1.34698464 0.77768197 -0.00000000 + Number of k-points along this vector: 2 + Fractional coordinates: + -0.2500 0.2500 + + Reciprocal space cell vector (au): + b 0.00000000 1.55536390 -0.00000000 + Number of k-points along this vector: 2 + Fractional coordinates: + -0.2500 0.2500 + + +--------------------------------------------------+ + | Summary of SCF and related options | + +--------------------------------------------------+ + + Energy and gradient calculation + Translation/rotation projected out of the gradient vector + Diagonalization of overlap matrices + Threshold for neglect of eigenvalues of overlap matrices: 0.1000E-05 + Diagonalization method set to: 2 + Maximum number of SCF iterations included in the DIIS: 4 + Automatic orbital shift for HOMO-LUMO gap below: 0.1000E+00 + + Fractional occupation numbers with Gaussian smearing + width of the smearing: 0.1000E-01 + + +--------------------------------------------------+ + | SCREENING OF BASIS FUNCTION PRODUCTS | + +--------------------------------------------------+ + + Threshold for shell products neglect: 0.1E-10 + Tolerance for shell products extents: 0.1E-07 + The biggest integral is expected to be: 0.2E+01 + Number of {mu,nu,L} shell products: 2277 + Number of direct lattice vectors: 77 + + + +--------------------------------------------------+ + | INITIAL ORBITALS/BANDS | + +--------------------------------------------------+ + + + reading orbital data $scfmo from file mos + orbital characterization : expanded + + Diagonalization of the overlap matrix requested + Threshold for eigenvalues: 0.1000E-05 + Total number of vectors: 28 + Largest eigenvalue: 0.7017E+01 + - for the k-point: 2 + Smallest eigenvalue: 0.2832E-04 + - for the k-point: 3 + Largest number of vectors: 28 + - for the k-point: 1 + Smallest number of vectors: 28 + - for the k-point: 1 + + BANDS have been orthonormalized + + +--------------------------------------------------+ + | DENSITY FUNCTIONAL THEORY | + +--------------------------------------------------+ + + DFT calculation will be performed + + B-P86 functional + exchange: LDA + Becke (B88) + correlation: LDA (VWN) + Perdew (P86) + + +--------------------------------------------------+ + | NUMERICAL INTEGRATION | + +--------------------------------------------------+ + + Will use smaller grid during SCF iterations and a grid + of size 3 for the last iteration. + + Integration of exchange-correlation term is performed with + Stratmann/Scuseria renormalization. + Specified sharpness parameter is .64000D+00. + Calculation of weight derivatives is switched OFF + Maximum number of grid points per atom: 6382 + Total number of grid points of the system: 10336 + + +--------------------------------------------------+ + | CONTINUOUS FAST MULTIPOLE METHOD | + +--------------------------------------------------+ + + Continuous Fast Multipole Method for the Coulomb term + order of multipole expansions: 20 + well-separateness criterion: 3.0000 + local multipole expansions switched on + local expansions incremented by: 2 + total number of centers: 2305 + number of octree levels: 5 + number of boxes at all levels: 51 + max. number of NF boxes per box: 44 + length of the lowest level box: 5.3325 + length of the highest level box: 85.3193 + + Periodic boundary conditions - crystal field construction: + extent of the nuclei: 1.1662 + extent of electron density: 19.3119 + extent of auxiliary density: 9.1945 + final crystal field radius: 43.9547 + number of lattice vectors: 313 + + RI core memory information + core memory allocated for RI integrals: 9 MB + maximum memory needed for RI integrals: 9 MB + + ------------------ Fractional Occupations ---------------- + Fermi level = -0.4442138678 + Electrons(/UC) = 12.0000000000 + Current HOMO-LUMO gap = 0.25009E+01 + ---------------------------------------------------------- + + +--------------------------------------------------+ + | SCF iteration 1 | + +--------------------------------------------------+ + + Number of electrons from P*S = 12.00000000000001 + + Numerical integration of the XC term: + Number of electrons = 12.00035740148205 + + ------------------ Fractional Occupations ---------------- + Fermi level = -0.3600736514 + Electrons(/UC) = 12.0000000000 + Current HOMO-LUMO gap = 0.25938E+00 + ---------------------------------------------------------- + SCF energy change = -7.380D+01 + Free energy change = -7.380D+01 + new damping factor = 0.300 + + +--------------------------------------------------+ + | KINETIC ENERGY = 79.2965563413 | + | COULOMB ENERGY = -142.1467494732 | + | EXCH. & CORR. ENERGY = -10.9535698950 | + |==================================================| + | TOTAL ENERGY = -73.8037630269 | + | T*S = -0.0000000000 | + | FREE ENERGY = -73.8037630269 | + | ENERGY (sigma->0) = -73.8037630269 | + +--------------------------------------------------+ + + + +--------------------------------------------------+ + | SCF iteration 2 | + +--------------------------------------------------+ + + Number of electrons from P*S = 12.00000000000000 + + Numerical integration of the XC term: + Number of electrons = 12.00013614950488 + + Norm of current diis error = 5.978D-01 + ------------------ Fractional Occupations ---------------- + Fermi level = -0.2834510521 + Electrons(/UC) = 12.0000000000 + Current HOMO-LUMO gap = 0.23173E+00 + ---------------------------------------------------------- + RMS of difference density = 2.201D-02 + SCF energy change = -2.138D+00 + Free energy change = -2.138D+00 + new damping factor = 0.250 + + +--------------------------------------------------+ + | KINETIC ENERGY = 75.8907578160 | + | COULOMB ENERGY = -140.9800849663 | + | EXCH. & CORR. ENERGY = -10.8526235919 | + |==================================================| + | TOTAL ENERGY = -75.9419507423 | + | T*S = -0.0000000000 | + | FREE ENERGY = -75.9419507423 | + | ENERGY (sigma->0) = -75.9419507423 | + +--------------------------------------------------+ + + + +--------------------------------------------------+ + | SCF iteration 3 | + +--------------------------------------------------+ + + Number of electrons from P*S = 12.00000000000000 + + Numerical integration of the XC term: + Number of electrons = 12.00010690078722 + + Norm of current diis error = 1.452D-01 + ------------------ Fractional Occupations ---------------- + Fermi level = -0.2152554033 + Electrons(/UC) = 12.0000000000 + Current HOMO-LUMO gap = 0.21815E+00 + ---------------------------------------------------------- + RMS of difference density = 4.340D-03 + SCF energy change = -2.522D-01 + Free energy change = -2.522D-01 + new damping factor = 0.150 + + +--------------------------------------------------+ + | KINETIC ENERGY = 75.5300718742 | + | COULOMB ENERGY = -140.8363799129 | + | EXCH. & CORR. ENERGY = -10.8878481806 | + |==================================================| + | TOTAL ENERGY = -76.1941562193 | + | T*S = -0.0000000000 | + | FREE ENERGY = -76.1941562193 | + | ENERGY (sigma->0) = -76.1941562193 | + +--------------------------------------------------+ + + + +--------------------------------------------------+ + | SCF iteration 4 | + +--------------------------------------------------+ + + Number of electrons from P*S = 12.00000000000000 + + Numerical integration of the XC term: + Number of electrons = 12.00010983126156 + + Norm of current diis error = 1.788D-02 + ------------------ Fractional Occupations ---------------- + Fermi level = -0.2062722011 + Electrons(/UC) = 12.0000000000 + Current HOMO-LUMO gap = 0.20480E+00 + ---------------------------------------------------------- + RMS of difference density = 2.359D-03 + SCF energy change = -1.939D-02 + Free energy change = -1.939D-02 + new damping factor = 0.100 + + +--------------------------------------------------+ + | KINETIC ENERGY = 75.3074181404 | + | COULOMB ENERGY = -140.6520680958 | + | EXCH. & CORR. ENERGY = -10.8689011872 | + |==================================================| + | TOTAL ENERGY = -76.2135511426 | + | T*S = -0.0000000000 | + | FREE ENERGY = -76.2135511426 | + | ENERGY (sigma->0) = -76.2135511426 | + +--------------------------------------------------+ + + + +--------------------------------------------------+ + | SCF iteration 5 | + +--------------------------------------------------+ + + Number of electrons from P*S = 12.00000000000000 + + Numerical integration of the XC term: + Number of electrons = 12.00010834346917 + + Norm of current diis error = 8.207D-03 + ------------------ Fractional Occupations ---------------- + Fermi level = -0.2049605123 + Electrons(/UC) = 12.0000000000 + Current HOMO-LUMO gap = 0.20234E+00 + ---------------------------------------------------------- + RMS of difference density = 2.716D-04 + SCF energy change = -8.098D-04 + Free energy change = -8.098D-04 + new damping factor = 0.100 + + +--------------------------------------------------+ + | KINETIC ENERGY = 75.3162146184 | + | COULOMB ENERGY = -140.6589570035 | + | EXCH. & CORR. ENERGY = -10.8716185752 | + |==================================================| + | TOTAL ENERGY = -76.2143609602 | + | T*S = -0.0000000000 | + | FREE ENERGY = -76.2143609602 | + | ENERGY (sigma->0) = -76.2143609602 | + +--------------------------------------------------+ + + + +--------------------------------------------------+ + | SCF iteration 6 | + +--------------------------------------------------+ + + Number of electrons from P*S = 12.00000000000000 + + Numerical integration of the XC term: + Number of electrons = 12.00010838742691 + + Norm of current diis error = 1.704D-03 + ------------------ Fractional Occupations ---------------- + Fermi level = -0.2048085148 + Electrons(/UC) = 12.0000000000 + Current HOMO-LUMO gap = 0.20216E+00 + ---------------------------------------------------------- + RMS of difference density = 6.755D-05 + SCF energy change = -1.593D-05 + Free energy change = -1.593D-05 + new damping factor = 0.100 + + +--------------------------------------------------+ + | KINETIC ENERGY = 75.3127771702 | + | COULOMB ENERGY = -140.6558176151 | + | EXCH. & CORR. ENERGY = -10.8713364504 | + |==================================================| + | TOTAL ENERGY = -76.2143768952 | + | T*S = -0.0000000000 | + | FREE ENERGY = -76.2143768952 | + | ENERGY (sigma->0) = -76.2143768952 | + +--------------------------------------------------+ + + + +--------------------------------------------------+ + | SCF iteration 7 | + +--------------------------------------------------+ + + Number of electrons from P*S = 12.00000000000001 + + Numerical integration of the XC term: + Number of electrons = 12.00010845496646 + + Norm of current diis error = 2.042D-04 + ------------------ Fractional Occupations ---------------- + Fermi level = -0.2048686662 + Electrons(/UC) = 12.0000000000 + Current HOMO-LUMO gap = 0.20215E+00 + ---------------------------------------------------------- + RMS of difference density = 1.597D-05 + SCF energy change = -3.790D-07 + Free energy change = -3.790D-07 + new damping factor = 0.100 + + +--------------------------------------------------+ + | KINETIC ENERGY = 75.3113090045 | + | COULOMB ENERGY = -140.6545570905 | + | EXCH. & CORR. ENERGY = -10.8711291883 | + |==================================================| + | TOTAL ENERGY = -76.2143772742 | + | T*S = -0.0000000000 | + | FREE ENERGY = -76.2143772742 | + | ENERGY (sigma->0) = -76.2143772742 | + +--------------------------------------------------+ + + + +--------------------------------------------------+ + | SCF iteration 8 | + +--------------------------------------------------+ + + Number of electrons from P*S = 12.00000000000001 + + Numerical integration of the XC term: + Number of electrons = 12.00010844665611 + + Norm of current diis error = 3.211D-05 + ------------------ Fractional Occupations ---------------- + Fermi level = -0.2048583011 + Electrons(/UC) = 12.0000000000 + Current HOMO-LUMO gap = 0.20215E+00 + ---------------------------------------------------------- + RMS of difference density = 7.163D-07 + SCF energy change = -5.023D-09 + Free energy change = -5.023D-09 + new damping factor = 0.150 + + +--------------------------------------------------+ + | KINETIC ENERGY = 75.3114673368 | + | COULOMB ENERGY = -140.6546924799 | + | EXCH. & CORR. ENERGY = -10.8711521361 | + |==================================================| + | TOTAL ENERGY = -76.2143772793 | + | T*S = -0.0000000000 | + | FREE ENERGY = -76.2143772793 | + | ENERGY (sigma->0) = -76.2143772793 | + +--------------------------------------------------+ + + + +--------------------------------------------------+ + | SCF converged - final SCF iteration | + +--------------------------------------------------+ + + Number of electrons from P*S = 12.00000000000002 + + Numerical integration of the XC term: + Number of electrons = 12.00010844916835 + + + SCF converged within 8 cycles. + + +--------------------------------------------------+ + | FINAL ENERGIES | + +--------------------------------------------------+ + | KINETIC ENERGY = 75.3114096158 | + | COULOMB ENERGY = -140.6546428011 | + | EXCH. & CORR. ENERGY = -10.8711440941 | + |==================================================| + | TOTAL ENERGY = -76.2143772794 | + | T*S = -0.0000000000 | + | FREE ENERGY = -76.2143772794 | + | ENERGY (sigma->0) = -76.2143772794 | + +--------------------------------------------------+ + + + ------------------ Fermi Level Statistics ---------------- + Lowest unoccupied band = -0.058869 + Highest occupied band = -0.261016 + Band gap = 0.202147 + Band gap middle = -0.159942 + Fermi level = -0.204858 + ---------------------------------------------------------- + + : there is no data group $energy + + + : $end is missing + + + orbitals $scfmo will be written to file mos + + Translation projected out of the gradient vector + + + : data group $grad is missing + + *** cartesian gradients written onto *** + + ------------------------------------------------------------------------ + RIPER profiling cpu wall ratio + ------------------------------------------------------------------------ + module sec % sec % + ------------------------------------------------------------------------ + RIPER 16.7 99.99 17.8 100.00 0.9 + Preliminaries 0.1 0.34 0.6 3.10 0.1 + BANDS init 0.0 0.05 0.1 0.55 0.1 + DFT grid setup 0.6 3.34 0.6 3.13 1.0 + DFT system grid 0.5 3.29 0.5 3.09 1.0 + PQ matrix 0.0 0.14 0.0 0.13 1.0 + PQ CFF 0.0 0.11 0.0 0.11 1.0 + SCF 13.1 78.59 13.6 76.40 1.0 + jmat nuclear 0.2 1.34 0.2 1.26 1.0 + SCF looop 12.9 77.17 13.3 74.67 1.0 + XC matrix 9.2 55.41 9.2 52.03 1.0 + Coulomb total 3.6 21.47 3.6 20.15 1.0 + gamma vector 2.4 14.39 2.4 13.51 1.0 + gamma CFF 0.3 1.56 0.3 1.46 1.0 + gamma CNF FF 0.7 4.05 0.7 3.79 1.0 + gamma CNF FF mom 0.3 1.58 0.3 1.48 1.0 + gamma CNF FF p. 1 0.0 0.14 0.0 0.14 1.0 + gamma CNF FF p. 2 0.4 2.27 0.4 2.12 1.0 + gamma CNF NF 1.5 8.79 1.5 8.26 1.0 + gamma CNF NF p. 1 1.3 7.94 1.3 7.47 1.0 + gamma CNF NF p. 2 0.1 0.84 0.1 0.79 1.0 + Coulomb matrix 1.2 7.07 1.2 6.63 1.0 + jmat CFF 0.3 1.57 0.3 1.47 1.0 + jmat CNF FF 0.7 3.94 0.7 3.71 1.0 + jmat CNF FF p. 2 0.4 2.25 0.4 2.11 1.0 + jmat CNF FF p. 3 0.0 0.11 0.0 0.10 1.0 + jmat CNF NF 0.1 0.34 0.1 0.31 1.0 + elec. en. aux 0.2 1.21 0.2 1.14 1.0 + DIIS 0.0 0.07 0.1 0.73 0.1 + MO dump 0.0 0.11 0.3 1.69 0.1 + mos dump 0.0 0.02 0.0 0.18 0.1 + Gradient 2.9 17.43 2.9 16.56 1.0 + grad XC 0.9 5.58 0.9 5.24 1.0 + grad Coulomb 2.0 11.82 2.0 11.09 1.0 + grad CFF 0.2 0.94 0.2 0.89 1.0 + CFF drho 0.1 0.77 0.1 0.72 1.0 + grad FF CNF 0.3 1.97 0.3 1.84 1.0 + CNF FF dnuc 0.1 0.46 0.1 0.43 1.0 + CNF FF daux 0.1 0.46 0.1 0.43 1.0 + CNF FF drho 0.2 1.05 0.2 0.98 1.0 + grad NF CNF 1.5 8.91 1.5 8.36 1.0 + CNF NF drhoaux 0.9 5.62 0.9 5.28 1.0 + CNF NF drhonuc 0.5 3.22 0.5 3.01 1.0 + ------------------------------------------------------------------------ + sum 76.5 458.29 79.5 447.13 1.0 + ------------------------------------------------------------------------ + + + ------------------------------------------------------------------------ + total cpu-time : 16.70 seconds + total wall-time : 17.81 seconds + ------------------------------------------------------------------------ + + **** riper : all done **** + + + 2023-01-25 00:22:47.201 + diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/riper/h_chain/ref_output.json b/turbomoleio/testfiles/outputs/TM_v7.6/riper/h_chain/ref_output.json new file mode 100644 index 0000000..6b7e770 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/riper/h_chain/ref_output.json @@ -0,0 +1,138 @@ +{ + "@module": "turbomoleio.output.files", + "@class": "ScfOutput", + "@version": "1.3.0", + "dft": null, + "scf": null, + "energies": { + "@module": "turbomoleio.output.data", + "@class": "ScfEnergiesData", + "@version": "1.3.0", + "total_energy": -1.1595574974, + "kinetic_energy": 1.0583304493, + "potential_energy": null, + "virial_theorem": null, + "wavefunction_norm": null, + "coulomb_energy": -1.5316608497, + "xc_energy": -0.686227097, + "ts_energy": -0.0, + "free_energy": -1.1595574974, + "sigma0_energy": -1.1595574974 + }, + "electrostatic": null, + "geometry": { + "@module": "turbomoleio.output.data", + "@class": "GeometryData", + "@version": "1.3.0", + "center_of_mass": [ + 1.88972612, + 0.5, + 0.5 + ], + "center_of_charge": [ + 1.88972612, + 0.5, + 0.5 + ], + "molecule": { + "@module": "pymatgen.core.structure", + "@class": "Molecule", + "charge": 0.0, + "spin_multiplicity": 1, + "sites": [ + { + "name": "H", + "species": [ + { + "element": "H", + "occu": 1 + } + ], + "xyz": [ + 0.4999999987760739, + 0.2645886054515, + 0.2645886054515 + ], + "properties": {} + }, + { + "name": "H", + "species": [ + { + "element": "H", + "occu": 1 + } + ], + "xyz": [ + 1.500000001619994, + 0.2645886054515, + 0.2645886054515 + ], + "properties": {} + } + ] + } + }, + "basis": null, + "run": { + "@module": "turbomoleio.output.data", + "@class": "RunData", + "@version": "1.3.0", + "host": "frontal3", + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:22:24.734000" + }, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:22:27.485000" + }, + "cpu_time": 0.5, + "wall_time": 2.83 + }, + "tm": { + "@module": "turbomoleio.output.data", + "@class": "TurbomoleData", + "@version": "1.3.0", + "version": "7.6", + "build": null, + "executable": "riper" + }, + "cosmo": null, + "spin": { + "@module": "turbomoleio.output.data", + "@class": "SpinData", + "@version": "1.3.0", + "unrestricted": false, + "s2": null + }, + "integral": null, + "smearing": null, + "symmetry": null, + "periodicity": { + "@module": "turbomoleio.output.data", + "@class": "PeriodicityData", + "@version": "1.3.0", + "periodicity": 1, + "lattice_params": [ + 2.0000000003960676 + ], + "shortest_interatomic_distance": 0.999986175443399, + "direct_space_vectors": [ + [ + 2.0000000003960676, + 0.0, + 0.0 + ] + ], + "reciprocal_space_vectors": [ + [ + 3.1415926569535033, + -0.0, + -0.0 + ] + ] + } +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/riper/h_chain/ref_parser.json b/turbomoleio/testfiles/outputs/TM_v7.6/riper/h_chain/ref_parser.json new file mode 100644 index 0000000..eb1dce6 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/riper/h_chain/ref_parser.json @@ -0,0 +1,122 @@ +{ + "all_done": true, + "header": { + "executable": "riper", + "host": "frontal3", + "tm_version": "7.6", + "tm_build": null, + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:22:24.734000" + } + }, + "centers": { + "center_of_mass": [ + 1.88972612, + 0.5, + 0.5 + ], + "center_of_charge": [ + 1.88972612, + 0.5, + 0.5 + ] + }, + "coordinates": { + "coords": [ + [ + 0.94486306, + 0.5, + 0.5 + ], + [ + 2.83458919, + 0.5, + 0.5 + ] + ], + "species": [ + "h", + "h" + ], + "charges": [ + 1.0, + 1.0 + ], + "isotopes": [ + 0, + 0 + ] + }, + "basis": null, + "symmetry": null, + "cosmo_header": null, + "density_functional_data": null, + "rij_info": null, + "dftd": null, + "pre_scf_run": null, + "scf_iterations": null, + "scf_energies": null, + "cosmo_results": null, + "electrostatic_moments": null, + "timings": { + "cpu_time": 0.5, + "wall_time": 2.83, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:22:27.485000" + } + }, + "s2": null, + "is_uhf": false, + "fermi": null, + "integral": null, + "pre_escf_run": null, + "escf_iterations": null, + "escf_gs_total_en": null, + "escf_excitations": null, + "rdgrad_memory": null, + "gradient": null, + "egrad_excited_state": null, + "statpt_info": null, + "relax_info": null, + "relax_gradient_values": null, + "relax_conv_info": null, + "aoforce_numerical_integration": null, + "aoforce_analysis": null, + "mp2_results": { + "energy": null + }, + "riper_scf_energies": { + "total_energy": -1.1595574974, + "kinetic_energy": 1.0583304493, + "coulomb_energy": -1.5316608497, + "xc_energy": -0.686227097, + "ts_energy": -0.0, + "free_energy": -1.1595574974, + "sigma0_energy": -1.1595574974 + }, + "periodicity_data": { + "periodicity": 1, + "tm_lattice_params": [ + 3.77945225 + ], + "shortest_interatomic_distance": 1.8897, + "direct_space_vectors": [ + [ + 3.77945225, + 0.0, + 0.0 + ] + ], + "reciprocal_space_vectors": [ + [ + 1.66245924, + -0.0, + -0.0 + ] + ] + } +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/riper/h_chain/riper.log b/turbomoleio/testfiles/outputs/TM_v7.6/riper/h_chain/riper.log new file mode 100644 index 0000000..68f665e --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/riper/h_chain/riper.log @@ -0,0 +1,650 @@ + + riper (frontal3) : TURBOMOLE rev. V7-6 19 Oct 2021 at 10:10:11 compiled Oct 19th 2021 + Copyright (C) 2021 TURBOMOLE GmbH, Karlsruhe + + + 2023-01-25 00:22:24.734 + + Number of MKL threads: 1 + + ************************************************************************* + dscf + ************************************************************************* + + + + assign orbital basis set names as defaults + read basis sets from /projects/matgenix/COMMON/software/TURBOMOLE/evaluation_license/TURBOMOLE_76/jbasen/ + (basis sets have been saved in file auxbasis) + + ************************************************************************* + ************************************************************************* + *** _ _ _ _ *** + *** | |_ _ _ _ _| |__ ___ _ __ ___| |___( )___ *** + *** | _| || | '_| '_ \/ _ \ ' \/ _ \ / -_)/(_-< *** + *** \__|\_,_|_| |_.__/\___/_|_|_\___/_\___| /__/ *** + *** ___ ___ *** + *** // ) ) / / // ) ) // / / // ) ) *** + *** //___/ / / / //___/ / //____ //___/ / *** + *** / ___ ( / / / ____ / / ____ / ___ ( *** + *** // | | / / // // // | | *** + *** // | | __/ /___ // //____/ / // | | *** + *** *** + ************************************************************************* + ************************************************************************* + *************************** PROGRAM RIPER ******************************* + ****** Density Functional Theory with periodic boundary conditions ****** + ****** ****** + ****** Developed by the groups in Jena (M. Sierka) ****** + ****** and Munich (A. Burow) ****** + ************************************************************************* + + + References: + + (1) General implementation: + R. Lazarski, A. M. Burow, M. Sierka + Density Functional Theory for Molecular and Periodic Systems Using + Density Fitting and Continuous Fast Multipole Methods + J. Chem. Theory Comput. 2015, 11, 3029-3041 + R. Lazarski, A. M. Burow, L. Grajciar, M. Sierka + Density Functional Theory for Molecular and Periodic Systems Using + Density Fitting and Continuous Fast Multipole Methods: Analytical + Gradients + J. Comput. Chem. 2016, 57, 2518–2526 + (2) DFT implementation: + A. M. Burow, M. Sierka + Linear Scaling Hierarchical Integration Scheme For the + Exchange-Correlation Term in Molecular and Periodic Systems + J. Chem. Theory Comput. 2011, 7, 3097-3104 + (3) RI/DF approximation: + A. M. Burow, M. Sierka, F. Mohamed + Resolution of Identity Approximation for the Coulomb Term in + Molecular and Periodic Systems + J. Chem. Phys. 2009, 131, 214101/1-214101/6 + (4) Low-Memory Iterative Density Fitting (LMIDF) method: + L. Grajciar + Low-Memory Iterative Density Fitting + J. Comput. Chem. 2015, 36, 1521-1535 + + + + +--------------------------------------------------+ + | Atomic coordinate, charge and isotop information | + +--------------------------------------------------+ + + atomic coordinates atom charge isotop + 0.94486306 0.50000000 0.50000000 h 1.000 0 + 2.83458919 0.50000000 0.50000000 h 1.000 0 + + center of nuclear mass : 1.88972612 0.50000000 0.50000000 + center of nuclear charge: 1.88972612 0.50000000 0.50000000 + + + +--------------------------------------------------+ + | Periodic system found: PBC structure information | + +--------------------------------------------------+ + + Cell parameters (au,deg.) + +------------------------------------------------------------------------- + | |a| | + +------------------------------------------------------------------------- + 3.77945225 + +------------------------------------------------------------------------- + + Shortest interatomic distance (bohr): 1.8897 + + Periodicity in 1 dimensions + + Direct space cell vectors (au): + a 3.77945225 0.00000000 0.00000000 + + Reciprocal space cell vectors (au): + a 1.66245924 -0.00000000 -0.00000000 + + +--------------------------------------------------+ + | Fractional crystal coordinates | + +--------------------------------------------------+ + + atom fractional coordinates + h 0.25000000 0.50000000 0.50000000 + h 0.75000000 0.50000000 0.50000000 + + * BASIS SET information: + + +--------------------------------------------------+ + | basis set information | + +--------------------------------------------------+ + + we will work with the 1s 3p 5d 7f 9g ... basis set + ...i.e. with spherical basis functions... + + type atoms prim cont basis + --------------------------------------------------------------------------- + h 2 4 2 def-SV(P) [2s|4s] + --------------------------------------------------------------------------- + total: 2 8 4 + --------------------------------------------------------------------------- + + total number of primitive shells : 4 + total number of contracted shells : 4 + total number of cartesian basis functions : 4 + total number of SCF-basis functions : 4 + + + * AUXILIARY RI-J BASIS SET information: + + +--------------------------------------------------+ + | basis set information | + +--------------------------------------------------+ + + we will work with the 1s 3p 5d 7f 9g ... basis set + ...i.e. with spherical basis functions... + + type atoms prim cont basis + --------------------------------------------------------------------------- + h 2 10 5 def-SV(P) [2s1p|4s2p] + --------------------------------------------------------------------------- + total: 2 20 10 + --------------------------------------------------------------------------- + + total number of primitive shells : 6 + total number of contracted shells : 6 + total number of cartesian basis functions : 10 + total number of SCF-basis functions : 10 + + + +--------------------------------------------------+ + | K-POINT MESH | + +--------------------------------------------------+ + + Total number of k points used for density integration: 4 + Number of symmetry distinct k points used: 2 + + Reciprocal space cell vector (au): + a 1.66245924 -0.00000000 -0.00000000 + Number of k-points along this vector: 4 + Fractional coordinates: + -0.3750 -0.1250 0.1250 0.3750 + + +--------------------------------------------------+ + | Summary of SCF and related options | + +--------------------------------------------------+ + + Energy and gradient calculation + Translation/rotation projected out of the gradient vector + Diagonalization of overlap matrices + Threshold for neglect of eigenvalues of overlap matrices: 0.1000E-05 + Diagonalization method set to: 2 + Maximum number of SCF iterations included in the DIIS: 4 + Automatic orbital shift for HOMO-LUMO gap below: 0.1000E+00 + + Fractional occupation numbers with Gaussian smearing + width of the smearing: 0.1000E-01 + + +--------------------------------------------------+ + | SCREENING OF BASIS FUNCTION PRODUCTS | + +--------------------------------------------------+ + + Threshold for shell products neglect: 0.8E-10 + Tolerance for shell products extents: 0.1E-07 + The biggest integral is expected to be: 0.9E+00 + Number of {mu,nu,L} shell products: 82 + Number of direct lattice vectors: 11 + + + +--------------------------------------------------+ + | INITIAL ORBITALS/BANDS | + +--------------------------------------------------+ + + + reading orbital data $scfmo from file mos + orbital characterization : expanded + + Diagonalization of the overlap matrix requested + Threshold for eigenvalues: 0.1000E-05 + Total number of vectors: 4 + Largest eigenvalue: 0.5087E+01 + - for the k-point: 1 + Smallest eigenvalue: 0.4503E-04 + - for the k-point: 1 + Largest number of vectors: 4 + - for the k-point: 1 + Smallest number of vectors: 4 + - for the k-point: 1 + + BANDS have been orthonormalized + + +--------------------------------------------------+ + | DENSITY FUNCTIONAL THEORY | + +--------------------------------------------------+ + + DFT calculation will be performed + + B-P86 functional + exchange: LDA + Becke (B88) + correlation: LDA (VWN) + Perdew (P86) + + +--------------------------------------------------+ + | NUMERICAL INTEGRATION | + +--------------------------------------------------+ + + Will use smaller grid during SCF iterations and a grid + of size 3 for the last iteration. + + Integration of exchange-correlation term is performed with + Stratmann/Scuseria renormalization. + Specified sharpness parameter is .64000D+00. + Calculation of weight derivatives is switched OFF + Maximum number of grid points per atom: 5340 + Total number of grid points of the system: 9668 + + +--------------------------------------------------+ + | CONTINUOUS FAST MULTIPOLE METHOD | + +--------------------------------------------------+ + + Continuous Fast Multipole Method for the Coulomb term + order of multipole expansions: 20 + well-separateness criterion: 3.0000 + local multipole expansions switched on + local expansions incremented by: 2 + total number of centers: 90 + number of octree levels: 3 + number of boxes at all levels: 5 + max. number of NF boxes per box: 2 + length of the lowest level box: 20.2579 + length of the highest level box: 81.0317 + + Periodic boundary conditions - crystal field construction: + extent of the nuclei: 0.9449 + extent of electron density: 18.9160 + extent of auxiliary density: 8.8476 + final crystal field radius: 42.5432 + number of lattice vectors: 23 + + RI core memory information + core memory allocated for RI integrals: 1 MB + maximum memory needed for RI integrals: 1 MB + + ------------------ Fractional Occupations ---------------- + Fermi level = -0.5746133979 + Electrons(/UC) = 2.0000000000 + Current HOMO-LUMO gap = 0.26325E+01 + ---------------------------------------------------------- + + +--------------------------------------------------+ + | SCF iteration 1 | + +--------------------------------------------------+ + + Number of electrons from P*S = 2.00000000000000 + + Numerical integration of the XC term: + Number of electrons = 2.00000041814216 + + ------------------ Fractional Occupations ---------------- + Fermi level = -0.3831765531 + Electrons(/UC) = 2.0000000000 + Current HOMO-LUMO gap = 0.82782E+00 + ---------------------------------------------------------- + SCF energy change = -1.315D+00 + Free energy change = -1.315D+00 + new damping factor = 0.300 + + +--------------------------------------------------+ + | KINETIC ENERGY = 0.5286647727 | + | COULOMB ENERGY = -1.2492006755 | + | EXCH. & CORR. ENERGY = -0.5943184914 | + |==================================================| + | TOTAL ENERGY = -1.3148543942 | + | T*S = -0.0000000000 | + | FREE ENERGY = -1.3148543942 | + | ENERGY (sigma->0) = -1.3148543942 | + +--------------------------------------------------+ + + + +--------------------------------------------------+ + | SCF iteration 2 | + +--------------------------------------------------+ + + Number of electrons from P*S = 2.00000000000000 + + Numerical integration of the XC term: + Number of electrons = 1.99999916825660 + + Norm of current diis error = 1.931D-01 + ------------------ Fractional Occupations ---------------- + Fermi level = -0.2538426276 + Electrons(/UC) = 2.0000000000 + Current HOMO-LUMO gap = 0.44257E+00 + ---------------------------------------------------------- + RMS of difference density = 2.273D-02 + SCF energy change = 1.805D-01 + Free energy change = 1.805D-01 + new damping factor = 0.350 + + +--------------------------------------------------+ + | KINETIC ENERGY = 1.0225811473 | + | COULOMB ENERGY = -1.4855316589 | + | EXCH. & CORR. ENERGY = -0.6714537996 | + |==================================================| + | TOTAL ENERGY = -1.1344043111 | + | T*S = -0.0000000000 | + | FREE ENERGY = -1.1344043111 | + | ENERGY (sigma->0) = -1.1344043111 | + +--------------------------------------------------+ + + + +--------------------------------------------------+ + | SCF iteration 3 | + +--------------------------------------------------+ + + Number of electrons from P*S = 2.00000000000000 + + Numerical integration of the XC term: + Number of electrons = 1.99999908105518 + + Norm of current diis error = 7.603D-02 + ------------------ Fractional Occupations ---------------- + Fermi level = -0.2418987379 + Electrons(/UC) = 2.0000000000 + Current HOMO-LUMO gap = 0.36923E+00 + ---------------------------------------------------------- + RMS of difference density = 5.877D-03 + SCF energy change = -2.124D-02 + Free energy change = -2.124D-02 + new damping factor = 0.300 + + +--------------------------------------------------+ + | KINETIC ENERGY = 1.0318005837 | + | COULOMB ENERGY = -1.5092764908 | + | EXCH. & CORR. ENERGY = -0.6781645984 | + |==================================================| + | TOTAL ENERGY = -1.1556405055 | + | T*S = -0.0000000000 | + | FREE ENERGY = -1.1556405055 | + | ENERGY (sigma->0) = -1.1556405055 | + +--------------------------------------------------+ + + + +--------------------------------------------------+ + | SCF iteration 4 | + +--------------------------------------------------+ + + Number of electrons from P*S = 2.00000000000000 + + Numerical integration of the XC term: + Number of electrons = 1.99999901881537 + + Norm of current diis error = 2.694D-02 + ------------------ Fractional Occupations ---------------- + Fermi level = -0.2437597675 + Electrons(/UC) = 2.0000000000 + Current HOMO-LUMO gap = 0.35116E+00 + ---------------------------------------------------------- + RMS of difference density = 3.496D-03 + SCF energy change = -3.559D-03 + Free energy change = -3.559D-03 + new damping factor = 0.200 + + +--------------------------------------------------+ + | KINETIC ENERGY = 1.0465042170 | + | COULOMB ENERGY = -1.5228297957 | + | EXCH. & CORR. ENERGY = -0.6828739619 | + |==================================================| + | TOTAL ENERGY = -1.1591995407 | + | T*S = -0.0000000000 | + | FREE ENERGY = -1.1591995407 | + | ENERGY (sigma->0) = -1.1591995407 | + +--------------------------------------------------+ + + + +--------------------------------------------------+ + | SCF iteration 5 | + +--------------------------------------------------+ + + Number of electrons from P*S = 2.00000000000000 + + Numerical integration of the XC term: + Number of electrons = 1.99999898985567 + + Norm of current diis error = 8.187D-03 + ------------------ Fractional Occupations ---------------- + Fermi level = -0.2467712866 + Electrons(/UC) = 2.0000000000 + Current HOMO-LUMO gap = 0.34682E+00 + ---------------------------------------------------------- + RMS of difference density = 1.271D-03 + SCF energy change = -3.357D-04 + Free energy change = -3.357D-04 + new damping factor = 0.100 + + +--------------------------------------------------+ + | KINETIC ENERGY = 1.0543165625 | + | COULOMB ENERGY = -1.5287450622 | + | EXCH. & CORR. ENERGY = -0.6851067460 | + |==================================================| + | TOTAL ENERGY = -1.1595352457 | + | T*S = -0.0000000000 | + | FREE ENERGY = -1.1595352457 | + | ENERGY (sigma->0) = -1.1595352457 | + +--------------------------------------------------+ + + + +--------------------------------------------------+ + | SCF iteration 6 | + +--------------------------------------------------+ + + Number of electrons from P*S = 2.00000000000000 + + Numerical integration of the XC term: + Number of electrons = 1.99999897719288 + + Norm of current diis error = 1.130D-03 + ------------------ Fractional Occupations ---------------- + Fermi level = -0.2467947766 + Electrons(/UC) = 2.0000000000 + Current HOMO-LUMO gap = 0.34603E+00 + ---------------------------------------------------------- + RMS of difference density = 4.040D-04 + SCF energy change = -2.164D-05 + Free energy change = -2.164D-05 + new damping factor = 0.100 + + +--------------------------------------------------+ + | KINETIC ENERGY = 1.0578108332 | + | COULOMB ENERGY = -1.5312855113 | + | EXCH. & CORR. ENERGY = -0.6860822057 | + |==================================================| + | TOTAL ENERGY = -1.1595568838 | + | T*S = -0.0000000000 | + | FREE ENERGY = -1.1595568838 | + | ENERGY (sigma->0) = -1.1595568838 | + +--------------------------------------------------+ + + + +--------------------------------------------------+ + | SCF iteration 7 | + +--------------------------------------------------+ + + Number of electrons from P*S = 2.00000000000000 + + Numerical integration of the XC term: + Number of electrons = 1.99999897547376 + + Norm of current diis error = 9.298D-05 + ------------------ Fractional Occupations ---------------- + Fermi level = -0.2467558524 + Electrons(/UC) = 2.0000000000 + Current HOMO-LUMO gap = 0.34596E+00 + ---------------------------------------------------------- + RMS of difference density = 8.385D-05 + SCF energy change = -6.085D-07 + Free energy change = -6.085D-07 + new damping factor = 0.100 + + +--------------------------------------------------+ + | KINETIC ENERGY = 1.0582897600 | + | COULOMB ENERGY = -1.5316315055 | + | EXCH. & CORR. ENERGY = -0.6862157467 | + |==================================================| + | TOTAL ENERGY = -1.1595574923 | + | T*S = -0.0000000000 | + | FREE ENERGY = -1.1595574923 | + | ENERGY (sigma->0) = -1.1595574923 | + +--------------------------------------------------+ + + + +--------------------------------------------------+ + | SCF iteration 8 | + +--------------------------------------------------+ + + Number of electrons from P*S = 2.00000000000000 + + Numerical integration of the XC term: + Number of electrons = 1.99999897534038 + + Norm of current diis error = 8.431D-06 + ------------------ Fractional Occupations ---------------- + Fermi level = -0.2469281571 + Electrons(/UC) = 2.0000000000 + Current HOMO-LUMO gap = 0.34595E+00 + ---------------------------------------------------------- + RMS of difference density = 9.439D-06 + SCF energy change = -5.108D-09 + Free energy change = -5.108D-09 + new damping factor = 0.150 + + +--------------------------------------------------+ + | KINETIC ENERGY = 1.0583270653 | + | COULOMB ENERGY = -1.5316584096 | + | EXCH. & CORR. ENERGY = -0.6862261531 | + |==================================================| + | TOTAL ENERGY = -1.1595574974 | + | T*S = -0.0000000000 | + | FREE ENERGY = -1.1595574974 | + | ENERGY (sigma->0) = -1.1595574974 | + +--------------------------------------------------+ + + + +--------------------------------------------------+ + | SCF converged - final SCF iteration | + +--------------------------------------------------+ + + Number of electrons from P*S = 2.00000000000000 + + Numerical integration of the XC term: + Number of electrons = 1.99999897532827 + + + SCF converged within 8 cycles. + + +--------------------------------------------------+ + | FINAL ENERGIES | + +--------------------------------------------------+ + | KINETIC ENERGY = 1.0583304493 | + | COULOMB ENERGY = -1.5316608497 | + | EXCH. & CORR. ENERGY = -0.6862270970 | + |==================================================| + | TOTAL ENERGY = -1.1595574974 | + | T*S = -0.0000000000 | + | FREE ENERGY = -1.1595574974 | + | ENERGY (sigma->0) = -1.1595574974 | + +--------------------------------------------------+ + + + ------------------ Fermi Level Statistics ---------------- + Lowest unoccupied band = 0.041550 + Highest occupied band = -0.304401 + Band gap = 0.345951 + Band gap middle = -0.131426 + Fermi level = -0.246928 + ---------------------------------------------------------- + + : there is no data group $energy + + + : $end is missing + + + orbitals $scfmo will be written to file mos + + Translation projected out of the gradient vector + + + : data group $grad is missing + + *** cartesian gradients written onto *** + + ------------------------------------------------------------------------ + RIPER profiling cpu wall ratio + ------------------------------------------------------------------------ + module sec % sec % + ------------------------------------------------------------------------ + RIPER 0.5 99.80 2.8 99.97 0.2 + Preliminaries 0.0 8.02 0.5 16.99 0.1 + preescrening 0.0 0.20 0.0 0.04 0.9 + BANDS init 0.0 1.00 0.2 7.36 0.0 + DFT grid setup 0.0 5.41 0.0 0.97 1.0 + DFT atomic grids 0.0 0.20 0.0 0.05 0.7 + DFT system grid 0.0 4.81 0.0 0.85 1.0 + DFT octree 0.0 0.40 0.0 0.07 1.1 + CFMM preliminaries 0.0 0.80 0.0 0.13 1.1 + RI core setup 0.0 0.20 0.0 0.03 1.0 + PQ matrix 0.0 0.40 0.0 0.08 0.9 + PQ CFF 0.0 0.40 0.0 0.07 1.0 + SCF 0.4 74.95 1.9 69.54 0.2 + nuclear energy 0.0 0.20 0.0 0.03 1.0 + jmat nuclear 0.0 0.20 0.0 0.04 1.0 + SCF looop 0.4 73.15 1.8 63.68 0.2 + XC matrix 0.3 58.52 0.3 10.64 1.0 + Coulomb total 0.1 10.22 0.1 1.83 1.0 + gamma vector 0.0 4.81 0.0 0.86 1.0 + gamma CFF 0.0 1.40 0.0 0.22 1.2 + gamma CNF FF 0.0 2.20 0.0 0.47 0.9 + gamma CNF FF mom 0.0 0.60 0.0 0.15 0.7 + gamma CNF FF p. 1 0.0 0.60 0.0 0.09 1.1 + gamma CNF FF p. 2 0.0 1.00 0.0 0.15 1.2 + gamma CNF NF 0.0 1.20 0.0 0.17 1.3 + gamma CNF NF p. 1 0.0 0.80 0.0 0.10 1.4 + gamma CNF NF p. 2 0.0 0.40 0.0 0.07 1.1 + Coulomb matrix 0.0 5.41 0.0 0.96 1.0 + jmat CFF 0.0 1.20 0.0 0.19 1.2 + jmat CNF FF 0.0 2.00 0.0 0.39 0.9 + jmat CNF FF p. 1 0.0 0.60 0.0 0.08 1.4 + jmat CNF FF p. 2 0.0 0.80 0.0 0.13 1.1 + jmat CNF FF p. 3 0.0 0.20 0.0 0.06 0.6 + jmat CNF NF 0.0 0.40 0.0 0.02 2.0 + elec. en. aux 0.0 1.80 0.0 0.36 0.9 + DIIS 0.0 1.60 0.2 5.98 0.0 + SCF solve 0.0 0.20 0.0 0.05 0.7 + MO dump 0.0 3.01 1.3 45.51 0.0 + mos dump 0.0 0.60 0.1 3.79 0.0 + Gradient 0.0 9.02 0.1 4.34 0.4 + grad XC 0.0 6.01 0.0 1.08 1.0 + grad Coulomb 0.0 2.40 0.0 0.45 1.0 + grad CFF 0.0 0.40 0.0 0.08 0.9 + CFF dauxaux 0.0 0.20 0.0 0.01 1.0 + CFF drho 0.0 0.20 0.0 0.06 0.6 + grad FF CNF 0.0 1.00 0.0 0.19 0.9 + CNF FF dnuc 0.0 0.40 0.0 0.08 0.9 + CNF FF daux 0.0 0.20 0.0 0.04 0.8 + CNF FF drho 0.0 0.40 0.0 0.07 1.0 + grad NF CNF 0.0 1.00 0.0 0.18 1.0 + CNF NF drhoaux 0.0 0.60 0.0 0.11 1.0 + CNF NF drhonuc 0.0 0.40 0.0 0.07 1.1 + Properties 0.0 0.00 0.0 0.43 0.0 + ------------------------------------------------------------------------ + sum 2.0 391.98 9.4 339.52 0.2 + ------------------------------------------------------------------------ + + + ------------------------------------------------------------------------ + total cpu-time : 0.50 seconds + total wall-time : 2.83 seconds + ------------------------------------------------------------------------ + + **** riper : all done **** + + + 2023-01-25 00:22:27.485 + diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/statpt/aceton_cartesian/ref_output.json b/turbomoleio/testfiles/outputs/TM_v7.6/statpt/aceton_cartesian/ref_output.json new file mode 100644 index 0000000..6af95ed --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/statpt/aceton_cartesian/ref_output.json @@ -0,0 +1,87 @@ +{ + "@module": "turbomoleio.output.files", + "@class": "StatptOutput", + "@version": "1.3.0", + "info": { + "@module": "turbomoleio.output.data", + "@class": "StatptData", + "@version": "1.3.0", + "max_trust_radius": 0.3, + "min_trust_radius": 0.001, + "init_trust_radius": 0.15, + "min_grad_norm_for_gdiis": 0.01, + "prev_steps_for_gdiis": 5, + "hessian_update_method": "BFGS", + "thr_energy_change": 1e-06, + "thr_max_displ": 0.001, + "thr_max_grad": 0.001, + "thr_rms_displ": 0.0005, + "thr_rms_grad": 0.0005, + "use_defaults": true, + "final_step_radius": 0.15 + }, + "gradients": { + "@module": "turbomoleio.output.data", + "@class": "RelaxGradientsData", + "@version": "1.3.0", + "norm_cartesian": 0.0816359, + "norm_internal": null, + "max_internal": null + }, + "convergence": { + "@module": "turbomoleio.output.data", + "@class": "RelaxConvergenceData", + "@version": "1.3.0", + "energy_change": { + "value": 192.9994516, + "thr": 1e-06, + "conv": false + }, + "rms_displ": { + "value": 0.0273861, + "thr": 0.0005, + "conv": false + }, + "max_displ": { + "value": 0.101343, + "thr": 0.001, + "conv": false + }, + "rms_grad": { + "value": 0.0149046, + "thr": 0.0005, + "conv": false + }, + "max_grad": { + "value": 0.0551553, + "thr": 0.001, + "conv": false + } + }, + "run": { + "@module": "turbomoleio.output.data", + "@class": "RunData", + "@version": "1.3.0", + "host": "frontal3", + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:23:23.756000" + }, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:23:23.962000" + }, + "cpu_time": 0.03, + "wall_time": 0.24 + }, + "tm": { + "@module": "turbomoleio.output.data", + "@class": "TurbomoleData", + "@version": "1.3.0", + "version": "7.6", + "build": null, + "executable": "statpt" + } +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/statpt/aceton_cartesian/ref_parser.json b/turbomoleio/testfiles/outputs/TM_v7.6/statpt/aceton_cartesian/ref_parser.json new file mode 100644 index 0000000..e6936d3 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/statpt/aceton_cartesian/ref_parser.json @@ -0,0 +1,202 @@ +{ + "all_done": true, + "header": { + "executable": "statpt", + "host": "frontal3", + "tm_version": "7.6", + "tm_build": null, + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:23:23.756000" + } + }, + "centers": { + "center_of_mass": [ + -0.0, + 0.0, + 0.0 + ], + "center_of_charge": [ + -0.00071328, + 0.15355432, + 0.0 + ] + }, + "coordinates": { + "coords": [ + [ + 0.04340035, + -2.43303953, + 0.0 + ], + [ + 2.40289845, + 1.33092842, + 0.0 + ], + [ + -2.44869437, + 1.25914649, + 0.0 + ], + [ + -0.00810063, + -0.18289217, + 0.0 + ], + [ + 2.09020694, + 3.35088178, + 0.0 + ], + [ + -4.02779836, + -0.02916167, + 0.0 + ], + [ + 3.51545227, + 0.83515949, + 1.64389798 + ], + [ + 3.51545227, + 0.83515949, + -1.64389798 + ], + [ + -2.56998075, + 2.4714595, + 1.64993688 + ], + [ + -2.56998075, + 2.4714595, + -1.64993688 + ] + ], + "species": [ + "o", + "c", + "c", + "c", + "h", + "h", + "h", + "h", + "h", + "h" + ], + "charges": [ + 8.0, + 6.0, + 6.0, + 6.0, + 1.0, + 1.0, + 1.0, + 1.0, + 1.0, + 1.0 + ], + "isotopes": [ + 0, + 0, + 0, + 0, + 0, + 0, + 0, + 0, + 0, + 0 + ] + }, + "basis": null, + "symmetry": null, + "cosmo_header": null, + "density_functional_data": null, + "rij_info": null, + "dftd": null, + "pre_scf_run": null, + "scf_iterations": null, + "scf_energies": null, + "cosmo_results": null, + "electrostatic_moments": null, + "timings": { + "cpu_time": 0.03, + "wall_time": 0.24, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:23:23.962000" + } + }, + "s2": null, + "is_uhf": false, + "fermi": null, + "integral": null, + "pre_escf_run": null, + "escf_iterations": null, + "escf_gs_total_en": null, + "escf_excitations": null, + "rdgrad_memory": null, + "gradient": null, + "egrad_excited_state": null, + "statpt_info": { + "max_trust_radius": 0.3, + "min_trust_radius": 0.001, + "init_trust_radius": 0.15, + "min_grad_norm_for_gdiis": 0.01, + "prev_steps_for_gdiis": 5, + "hessian_update_method": "BFGS", + "thr_energy_change": 1e-06, + "thr_max_displ": 0.001, + "thr_max_grad": 0.001, + "thr_rms_displ": 0.0005, + "thr_rms_grad": 0.0005, + "use_defaults": true, + "final_step_radius": 0.15 + }, + "relax_info": null, + "relax_gradient_values": { + "norm_cartesian": 0.0816359, + "norm_internal": null, + "max_internal": null + }, + "relax_conv_info": { + "energy_change": { + "value": 192.9994516, + "thr": 1e-06, + "conv": false + }, + "rms_displ": { + "value": 0.0273861, + "thr": 0.0005, + "conv": false + }, + "rms_grad": { + "value": 0.0149046, + "thr": 0.0005, + "conv": false + }, + "max_displ": { + "value": 0.101343, + "thr": 0.001, + "conv": false + }, + "max_grad": { + "value": 0.0551553, + "thr": 0.001, + "conv": false + } + }, + "aoforce_numerical_integration": null, + "aoforce_analysis": null, + "mp2_results": { + "energy": null + }, + "riper_scf_energies": null, + "periodicity_data": null +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/statpt/aceton_cartesian/statpt.log b/turbomoleio/testfiles/outputs/TM_v7.6/statpt/aceton_cartesian/statpt.log new file mode 100644 index 0000000..777d632 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/statpt/aceton_cartesian/statpt.log @@ -0,0 +1,132 @@ + + statpt (frontal3) : TURBOMOLE rev. V7-6 19 Oct 2021 at 10:10:11 compiled Oct 19th 2021 + Copyright (C) 2021 TURBOMOLE GmbH, Karlsruhe + + + 2023-01-25 00:23:23.756 + + + + this is S T A T P T + + + hessian and coordinate update for + stationary point search + + by barbara unterreiner, marek sierka, + and reinhart ahlrichs + + quantum chemistry group + universitaet karlsruhe + germany + + + + + +--------------------------------------------------+ + | Atomic coordinate, charge and isotop information | + +--------------------------------------------------+ + + atomic coordinates atom charge isotop + 0.04340035 -2.43303953 0.00000000 o 8.000 0 + 2.40289845 1.33092842 0.00000000 c 6.000 0 + -2.44869437 1.25914649 0.00000000 c 6.000 0 + -0.00810063 -0.18289217 0.00000000 c 6.000 0 + 2.09020694 3.35088178 0.00000000 h 1.000 0 + -4.02779836 -0.02916167 0.00000000 h 1.000 0 + 3.51545227 0.83515949 1.64389798 h 1.000 0 + 3.51545227 0.83515949 -1.64389798 h 1.000 0 + -2.56998075 2.47145950 1.64993688 h 1.000 0 + -2.56998075 2.47145950 -1.64993688 h 1.000 0 + + center of nuclear mass : -0.00000000 0.00000000 0.00000000 + center of nuclear charge: -0.00071328 0.15355432 0.00000000 + Keyword $statpt not found - using default options + + *************** Stationary point options ****************** + ************************************************************ + Maximum allowed trust radius: 3.000000E-01 + Minimum allowed trust radius: 1.000000E-03 + Initial trust radius: 1.500000E-01 + GDIIS used if gradient norm < 1.000000E-02 + Number of previous steps for GDIIS: 5 + Hessian update method: BFGS + *** Convergence criteria *** + Threshold for energy change: 1.000000E-06 + Threshold for max displacement element: 1.000000E-03 + Threshold for max gradient element : 1.000000E-03 + Threshold for RMS of displacement: 5.000000E-04 + Threshold for RMS of gradient: 5.000000E-04 + ************************************************************ + + + Keyword $statp missing in file + + Keyword $statpt not found - using default options + + Keyword $optinfo missing in file + + ************************************************************************* + ATOM CARTESIAN COORDINATES + 1 o 0.04340035000000 -2.43303953000000 0.00000000000000 + 2 c 2.40289845000000 1.33092842000000 0.00000000000000 + 3 c -2.44869437000000 1.25914649000000 0.00000000000000 + 4 c -0.00810063000000 -0.18289217000000 0.00000000000000 + 5 h 2.09020694000000 3.35088178000000 0.00000000000000 + 6 h -4.02779836000000 -0.02916167000000 0.00000000000000 + 7 h 3.51545227000000 0.83515949000000 1.64389798000000 + 8 h 3.51545227000000 0.83515949000000 -1.64389798000000 + 9 h -2.56998075000000 2.47145950000000 1.64993688000000 + 10 h -2.56998075000000 2.47145950000000 -1.64993688000000 + ************************************************************************* + ATOM CARTESIAN GRADIENTS + 1 o -0.00164111514958 0.05515525073984 0.00000000000162 + 2 c 0.00681095670646 -0.00225366708791 0.00000000000184 + 3 c -0.00452997216625 0.00112020222220 -0.00000000000585 + 4 c 0.00135853177628 -0.03431185966166 -0.00000000000156 + 5 h 0.00225102959899 -0.01960723158657 0.00000000000148 + 6 h 0.01587170229090 0.01369377440813 0.00000000000022 + 7 h -0.01086645865441 0.00545177551016 -0.01577167497440 + 8 h -0.01086645865393 0.00545177550995 0.01577167497474 + 9 h 0.00080899188973 -0.01234826398811 -0.01481431704226 + 10 h 0.00080899188994 -0.01234826398835 0.01481431704227 + ************************************************************************* + + norm of actual CARTESIAN gradient: 8.16359E-02 + + ENERGY = -192.9994516105 a.u.; # of cycle = 1 + + + Keyword $hessapprox missing in file + + + USING DIAGONAL INITIAL HESSIAN + Diagonal elements set to: 0.50000 + Number of zero Hessian eigenvalues: 6 + + Results of the TRO shift search + Final shift: -4.42393E-02 residual -2.91434E-16 + Final step radius: 1.50000E-01 + + ****************************************************************** + CONVERGENCE INFORMATION + + Converged? Value Criterion + Energy change no 192.9994516 0.0000010 + RMS of displacement no 0.0273861 0.0005000 + RMS of gradient no 0.0149046 0.0005000 + MAX displacement no 0.1013430 0.0010000 + MAX gradient no 0.0551553 0.0010000 + ****************************************************************** + + + ------------------------------------------------------------------------ + total cpu-time : 0.03 seconds + total wall-time : 0.24 seconds + ------------------------------------------------------------------------ + + **** statpt : all done **** + + + 2023-01-25 00:23:23.962 + diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/statpt/h3cbr_internal/ref_output.json b/turbomoleio/testfiles/outputs/TM_v7.6/statpt/h3cbr_internal/ref_output.json new file mode 100644 index 0000000..483a454 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/statpt/h3cbr_internal/ref_output.json @@ -0,0 +1,87 @@ +{ + "@module": "turbomoleio.output.files", + "@class": "StatptOutput", + "@version": "1.3.0", + "info": { + "@module": "turbomoleio.output.data", + "@class": "StatptData", + "@version": "1.3.0", + "max_trust_radius": 0.3, + "min_trust_radius": 0.001, + "init_trust_radius": 0.15, + "min_grad_norm_for_gdiis": 0.01, + "prev_steps_for_gdiis": 5, + "hessian_update_method": "BFGS", + "thr_energy_change": 1e-06, + "thr_max_displ": 0.001, + "thr_max_grad": 0.001, + "thr_rms_displ": 0.0005, + "thr_rms_grad": 0.0005, + "use_defaults": true, + "final_step_radius": 0.0699353 + }, + "gradients": { + "@module": "turbomoleio.output.data", + "@class": "RelaxGradientsData", + "@version": "1.3.0", + "norm_cartesian": 0.0320244, + "norm_internal": 0.0313254, + "max_internal": null + }, + "convergence": { + "@module": "turbomoleio.output.data", + "@class": "RelaxConvergenceData", + "@version": "1.3.0", + "energy_change": { + "value": 2614.0056596, + "thr": 1e-06, + "conv": false + }, + "rms_displ": { + "value": 0.0403772, + "thr": 0.0005, + "conv": false + }, + "max_displ": { + "value": 0.064963, + "thr": 0.001, + "conv": false + }, + "rms_grad": { + "value": 0.0180857, + "thr": 0.0005, + "conv": false + }, + "max_grad": { + "value": 0.0289148, + "thr": 0.001, + "conv": false + } + }, + "run": { + "@module": "turbomoleio.output.data", + "@class": "RunData", + "@version": "1.3.0", + "host": "frontal3", + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:23:28.221000" + }, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:23:28.525000" + }, + "cpu_time": 0.04, + "wall_time": 0.34 + }, + "tm": { + "@module": "turbomoleio.output.data", + "@class": "TurbomoleData", + "@version": "1.3.0", + "version": "7.6", + "build": null, + "executable": "statpt" + } +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/statpt/h3cbr_internal/ref_parser.json b/turbomoleio/testfiles/outputs/TM_v7.6/statpt/h3cbr_internal/ref_parser.json new file mode 100644 index 0000000..6501d41 --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/statpt/h3cbr_internal/ref_parser.json @@ -0,0 +1,162 @@ +{ + "all_done": true, + "header": { + "executable": "statpt", + "host": "frontal3", + "tm_version": "7.6", + "tm_build": null, + "start_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:23:28.221000" + } + }, + "centers": { + "center_of_mass": [ + 0.0, + 0.0, + 2.69459223 + ], + "center_of_charge": [ + 0.0, + 0.0, + 2.50352177 + ] + }, + "coordinates": { + "coords": [ + [ + 0.0, + 0.0, + -0.34653371 + ], + [ + 0.97212285, + 1.68376616, + -0.98142628 + ], + [ + 0.97212285, + -1.68376616, + -0.98142628 + ], + [ + -1.94424569, + 0.0, + -0.98142628 + ], + [ + 0.0, + 0.0, + 3.29081255 + ] + ], + "species": [ + "c", + "h", + "h", + "h", + "br" + ], + "charges": [ + 6.0, + 1.0, + 1.0, + 1.0, + 35.0 + ], + "isotopes": [ + 0, + 0, + 0, + 0, + 0 + ] + }, + "basis": null, + "symmetry": null, + "cosmo_header": null, + "density_functional_data": null, + "rij_info": null, + "dftd": null, + "pre_scf_run": null, + "scf_iterations": null, + "scf_energies": null, + "cosmo_results": null, + "electrostatic_moments": null, + "timings": { + "cpu_time": 0.04, + "wall_time": 0.34, + "end_time": { + "@module": "datetime", + "@class": "datetime", + "string": "2023-01-25 00:23:28.525000" + } + }, + "s2": null, + "is_uhf": false, + "fermi": null, + "integral": null, + "pre_escf_run": null, + "escf_iterations": null, + "escf_gs_total_en": null, + "escf_excitations": null, + "rdgrad_memory": null, + "gradient": null, + "egrad_excited_state": null, + "statpt_info": { + "max_trust_radius": 0.3, + "min_trust_radius": 0.001, + "init_trust_radius": 0.15, + "min_grad_norm_for_gdiis": 0.01, + "prev_steps_for_gdiis": 5, + "hessian_update_method": "BFGS", + "thr_energy_change": 1e-06, + "thr_max_displ": 0.001, + "thr_max_grad": 0.001, + "thr_rms_displ": 0.0005, + "thr_rms_grad": 0.0005, + "use_defaults": true, + "final_step_radius": 0.0699353 + }, + "relax_info": null, + "relax_gradient_values": { + "norm_cartesian": 0.0320244, + "norm_internal": 0.0313254, + "max_internal": null + }, + "relax_conv_info": { + "energy_change": { + "value": 2614.0056596, + "thr": 1e-06, + "conv": false + }, + "rms_displ": { + "value": 0.0403772, + "thr": 0.0005, + "conv": false + }, + "rms_grad": { + "value": 0.0180857, + "thr": 0.0005, + "conv": false + }, + "max_displ": { + "value": 0.064963, + "thr": 0.001, + "conv": false + }, + "max_grad": { + "value": 0.0289148, + "thr": 0.001, + "conv": false + } + }, + "aoforce_numerical_integration": null, + "aoforce_analysis": null, + "mp2_results": { + "energy": null + }, + "riper_scf_energies": null, + "periodicity_data": null +} \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/statpt/h3cbr_internal/statpt.log b/turbomoleio/testfiles/outputs/TM_v7.6/statpt/h3cbr_internal/statpt.log new file mode 100644 index 0000000..1d6d56b --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/statpt/h3cbr_internal/statpt.log @@ -0,0 +1,126 @@ + + statpt (frontal3) : TURBOMOLE rev. V7-6 19 Oct 2021 at 10:10:11 compiled Oct 19th 2021 + Copyright (C) 2021 TURBOMOLE GmbH, Karlsruhe + + + 2023-01-25 00:23:28.221 + + + + this is S T A T P T + + + hessian and coordinate update for + stationary point search + + by barbara unterreiner, marek sierka, + and reinhart ahlrichs + + quantum chemistry group + universitaet karlsruhe + germany + + + + + +--------------------------------------------------+ + | Atomic coordinate, charge and isotop information | + +--------------------------------------------------+ + + atomic coordinates atom charge isotop + 0.00000000 0.00000000 -0.34653371 c 6.000 0 + 0.97212285 1.68376616 -0.98142628 h 1.000 0 + 0.97212285 -1.68376616 -0.98142628 h 1.000 0 + -1.94424569 0.00000000 -0.98142628 h 1.000 0 + 0.00000000 0.00000000 3.29081255 br 35.000 0 + + center of nuclear mass : 0.00000000 0.00000000 2.69459223 + center of nuclear charge: 0.00000000 0.00000000 2.50352177 + Keyword $statpt not found - using default options + + *************** Stationary point options ****************** + ************************************************************ + Maximum allowed trust radius: 3.000000E-01 + Minimum allowed trust radius: 1.000000E-03 + Initial trust radius: 1.500000E-01 + GDIIS used if gradient norm < 1.000000E-02 + Number of previous steps for GDIIS: 5 + Hessian update method: BFGS + *** Convergence criteria *** + Threshold for energy change: 1.000000E-06 + Threshold for max displacement element: 1.000000E-03 + Threshold for max gradient element : 1.000000E-03 + Threshold for RMS of displacement: 5.000000E-04 + Threshold for RMS of gradient: 5.000000E-04 + ************************************************************ + + + Keyword $statp missing in file + + Keyword $statpt not found - using default options + Number of symmetry restricted degrees of freedom: 4 + Constituted by: 1 translational degrees of freedom + 0 rotational degrees of freedom + 3 internal degrees of freedom + + + Keyword $optinfo missing in file + + ************************************************************************* + ATOM CARTESIAN COORDINATES + 1 c 0.00000000000000 0.00000000000000 -0.34653371221582 + 2 h 0.97212284572838 1.68376616000000 -0.98142627852278 + 3 h 0.97212284572838 -1.68376616000000 -0.98142627852278 + 4 h -1.94424569145676 0.00000000000000 -0.98142627852278 + 5 br 0.00000000000000 0.00000000000000 3.29081254778418 + ************************************************************************* + ATOM CARTESIAN GRADIENTS + 1 c 0.00000000000000 0.00000000000000 -0.00697859407387 + 2 h -0.00776359109247 -0.01344693422134 0.00622749282383 + 3 h -0.00776359109247 0.01344693422134 0.00622749282383 + 4 h 0.01552718218493 0.00000000000000 0.00622749282383 + 5 br -0.00000000000004 0.00000000000000 -0.01171476382997 + ************************************************************************* + + norm of actual CARTESIAN gradient: 3.20244E-02 + norm of actual INTERNAL gradient: 3.13254E-02 + + ENERGY = -2614.0056595560 a.u.; # of cycle = 1 + + + Keyword $hessapprox missing in file + + Using approximate Hessian in internal coordinates + Number of zero Hessian eigenvalues: 0 + Final step radius: 6.99353E-02 + + Transforming internal coordinate displacements to Cartesian space + Iteration 1 residual norm 6.993529E-02 + Iteration 2 residual norm 1.754013E-04 + Iteration 3 residual norm 1.256710E-08 + Iteration 4 residual norm 5.721958E-16 + Transformation converged + Residual norm: 5.721958E-16 after 4 iterations + + ****************************************************************** + CONVERGENCE INFORMATION + + Converged? Value Criterion + Energy change no 2614.0056596 0.0000010 + RMS of displacement no 0.0403772 0.0005000 + RMS of gradient no 0.0180857 0.0005000 + MAX displacement no 0.0649630 0.0010000 + MAX gradient no 0.0289148 0.0010000 + ****************************************************************** + + + ------------------------------------------------------------------------ + total cpu-time : 0.04 seconds + total wall-time : 0.34 seconds + ------------------------------------------------------------------------ + + **** statpt : all done **** + + + 2023-01-25 00:23:28.525 + diff --git a/turbomoleio/testfiles/outputs/TM_v7.6/tests_config.yaml b/turbomoleio/testfiles/outputs/TM_v7.6/tests_config.yaml new file mode 100644 index 0000000..e2d712d --- /dev/null +++ b/turbomoleio/testfiles/outputs/TM_v7.6/tests_config.yaml @@ -0,0 +1,49 @@ +testlist: + aoforce: + - aceton_full + dscf: + - h2o_uhf +# - nh3_dftd1 # DFT-D1 is not working in Turbomole 7.6 + - aceton_dftd3_tzvp + - nh3_cosmo_fermi + - h2o_std + egrad: + - h2o_sym + - h3cbr_nosym + escf: + - no3_ridft_cosmo + - h2o_ridft_rpat + - Al6_columns + grad: + - h2o_std + jobex: + - no3_ridft + - h2o_dscf + - h2o_mp2_ridft_rimp2 + - h2o_mp2_dscf_mpgrad +# - h2o_mp2_dscf_mpgrad_cosmo + - h2o_mp2_dscf_mpgrad_cosmo_nosym + mpgrad: + - h2o_std_mp2 + - h2o_std_mp2_gradient + rdgrad: + - h2o_dftd3-bj + relax: + - h2o_cartesian + - h2o_internal + ricc2: + - h2o_std_mp2 + ridft: + - h2o_dftd3-bj_not_conv + - b28_many_irreps + - h2o_dftd2_marij + - nh3_rijk_libxc_m06 + rimp2: + - h2o_std_mp2 + riper: + - h_chain + - graphene + - bulk_LiH + statpt: + - aceton_cartesian + - h3cbr_internal diff --git a/turbomoleio/testfiles/outputs/generation/aoforce/aceton_full/TM_v7.5.1/basis b/turbomoleio/testfiles/outputs/generation/aoforce/aceton_full/TM_v7.5.1/basis new file mode 100644 index 0000000..439a987 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/aoforce/aceton_full/TM_v7.5.1/basis @@ -0,0 +1,57 @@ +$basis +* +o def-SV(P) +# o (7s4p1d) / [3s2p1d] {511/31/1} +* + 5 s + 2266.1767785 -0.53431809926E-02 + 340.87010191 -0.39890039230E-01 + 77.363135167 -0.17853911985 + 21.479644940 -0.46427684959 + 6.6589433124 -0.44309745172 + 1 s + 0.80975975668 1.0000000000 + 1 s + 0.25530772234 1.0000000000 + 3 p + 17.721504317 0.43394573193E-01 + 3.8635505440 0.23094120765 + 1.0480920883 0.51375311064 + 1 p + 0.27641544411 1.0000000000 + 1 d + 1.2000000000 1.0000000000 +* +c def-SV(P) +# c (7s4p1d) / [3s2p1d] {511/31/1} +* + 5 s + 1238.4016938 0.54568832082E-02 + 186.29004992 0.40638409211E-01 + 42.251176346 0.18025593888 + 11.676557932 0.46315121755 + 3.5930506482 0.44087173314 + 1 s + 0.40245147363 1.0000000000 + 1 s + 0.13090182668 1.0000000000 + 3 p + 9.4680970621 0.38387871728E-01 + 2.0103545142 0.21117025112 + 0.54771004707 0.51328172114 + 1 p + 0.15268613795 1.0000000000 + 1 d + 0.80000000000 1.0000000000 +* +h def-SV(P) +# h (4s) / [2s] {31} +* + 3 s + 13.010701000 0.19682158000E-01 + 1.9622572000 0.13796524000 + 0.44453796000 0.47831935000 + 1 s + 0.12194962000 1.0000000000 +* +$end diff --git a/turbomoleio/testfiles/outputs/generation/aoforce/aceton_full/TM_v7.5.1/control b/turbomoleio/testfiles/outputs/generation/aoforce/aceton_full/TM_v7.5.1/control new file mode 100644 index 0000000..e40ea54 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/aoforce/aceton_full/TM_v7.5.1/control @@ -0,0 +1,66 @@ +$title +dscf +$symmetry cs +$redundant file=coord +$user-defined bonds file=coord +$coord file=coord +$optimize + internal on + redundant on + cartesian off + global off + basis off +$atoms +o 1 \ + basis =o def-SV(P) +c 2-4 \ + basis =c def-SV(P) +h 5-10 \ + basis =h def-SV(P) +$basis file=basis +$scfmo file=mos +$closed shells + a' 1-13 ( 2 ) + a" 1-3 ( 2 ) +$scfiterlimit 200 +$thize 0.10000000E-04 +$thime 5 +$scfdamp start=0.300 step=0.050 min=0.100 +$scfdump +$scfintunit + unit=30 size=0 file=twoint +$scfdiis +$maxcor 500 MiB per_core +$scforbitalshift automatic=.1 +$drvopt + cartesian on + basis off + global off + hessian on + dipole on + nuclear polarizability +$interconversion off + qconv=1.d-7 + maxiter=25 +$coordinateupdate + dqmax=0.3 + interpolate on + statistics 5 +$forceupdate + ahlrichs numgeo=0 mingeo=3 maxgeo=4 modus= dynamic fail=0.3 + threig=0.005 reseig=0.005 thrbig=3.0 scale=1.00 damping=0.0 +$forceinit on + diag=default +$energy file=energy +$grad file=gradient +$forceapprox file=forceapprox +$dft + functional b-p + gridsize m3 +$rundimensions + natoms=10 + nbf(CAO)=72 + nbf(AO)=68 +$last step define +$scfconv 8 +$end diff --git a/turbomoleio/testfiles/outputs/generation/aoforce/aceton_full/TM_v7.5.1/coord b/turbomoleio/testfiles/outputs/generation/aoforce/aceton_full/TM_v7.5.1/coord new file mode 100644 index 0000000..65264c5 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/aoforce/aceton_full/TM_v7.5.1/coord @@ -0,0 +1,103 @@ +# RCS ################################################################ +# $Id: aceton,v 1.1 1992/04/14 14:49:59 chi Exp $ +# $Log: aceton,v $ +# Revision 1.1 1992/04/14 14:49:59 chi +# Initial revision +# +# RCS ################################################################ +$coord + 0.05814498280022 -3.50738391170279 0.00000000000000 o CO + 2.43488578944689 0.35436813184278 0.00000000000000 c CO + -2.48030013244557 0.26702469015386 0.00000000000000 c CH + -0.00509976709382 -1.20231423481898 0.00000000000000 c CH + 2.11408643451546 2.42830913126657 0.00000000000000 h CH + -4.10640228630994 -1.05476626438667 0.00000000000000 h CH + 3.57887082870945 -0.16668275829718 1.68562205102722 h CH + 3.57887082870945 -0.16668275829718 -1.68562205102722 h CH + -2.58652833916609 1.52406398711978 1.68701864708703 h CH + -2.58652833916609 1.52406398711978 -1.68701864708703 h CH +$user-defined bonds +$redundant + number_of_atoms 10 + degrees_of_freedom 15 + internal_coordinates 15 + frozen_coordinates 0 +# definitions of redundant internals + 1 k 1.0000000000000 stre 4 1 val= 2.30594 + 2 k 1.0000000000000 stre 2 5 val= 2.09861 + 3 k 1.0000000000000 stre 3 6 val= 2.09555 + 4 k 1.0000000000000 stre 4 3 val= 2.87847 + 5 k 1.0000000000000 stre 4 2 val= 2.89427 + 6 k 1.0000000000000 stre 3 9 val= 2.10653 + 7 k 0.4572630820230 bend 7 5 2 val= 0.96119 + 0.4572630820230 bend 8 5 2 + 0.3237205227023 bend 8 7 2 + -0.3703582402046 bend 4 5 2 + -0.4122261180054 bend 4 7 2 + -0.4122261180054 bend 4 8 2 + 8 k 1.0000000000000 stre 2 7 val= 2.10274 + 9 k 0.4453099143499 bend 9 6 3 val= 0.81250 + 0.4453099143499 bend 10 6 3 + 0.3469841335560 bend 10 9 3 + -0.3754687919630 bend 4 6 3 + -0.4135355835267 bend 4 9 3 + -0.4135355835267 bend 4 10 3 + 10 k -0.2729760557190 bend 7 5 2 val= 2.24724 + -0.2729760557190 bend 8 5 2 + 0.7201074892330 bend 8 7 2 + -0.4990666142853 bend 4 5 2 + 0.2041394920938 bend 4 7 2 + 0.2041394920938 bend 4 8 2 + 11 k -0.2992456910529 bend 9 6 3 val= 0.62813 + -0.2992456910529 bend 10 6 3 + 0.7181824106524 bend 10 9 3 + -0.4778115993765 bend 4 6 3 + 0.1959772095211 bend 4 9 3 + 0.1959772095211 bend 4 10 3 + 12 k 0.7071067811865 bend 3 1 4 val= 0.65014 + -0.7071067811865 bend 2 1 4 + 13 k 1.0000000000000 bend 2 3 4 val= 116.76820 + 14 k 0.2203309768934 bend 9 6 3 val= 1.58530 + 0.2203309768934 bend 10 6 3 + -0.4542895359154 bend 10 9 3 + -0.6707389684000 bend 4 6 3 + 0.3511686027180 bend 4 9 3 + 0.3511686027180 bend 4 10 3 + 15 k 0.2209136892733 bend 7 5 2 val= -0.63329 + 0.2209136892733 bend 8 5 2 + -0.4826711064759 bend 8 7 2 + -0.6527912496301 bend 4 5 2 + 0.3487739032403 bend 4 7 2 + 0.3487739032403 bend 4 8 2 + 15 non zero eigenvalues of BmBt + 1 3.983223815 1 0 + 1 + 2 3.811051072 2 0 + 2 + 3 3.186784166 3 0 + 3 + 4 3.127535950 4 0 + 4 + 5 2.230178626 5 0 + 5 + 6 1.674358680 6 0 + 6 + 7 0.885304761 7 0 + 7 + 8 0.857228060 8 0 + 8 + 9 0.678813798 9 0 + 9 + 10 0.672479508 10 0 + 10 + 11 0.551433905 11 0 + 11 + 12 0.339163781 12 0 + 12 + 13 0.287335600 13 0 + 13 + 14 0.253385116 14 0 + 14 + 15 0.057944156 15 0 + 15 +$end diff --git a/turbomoleio/testfiles/outputs/generation/aoforce/aceton_full/control b/turbomoleio/testfiles/outputs/generation/aoforce/aceton_full/control index e40ea54..5d2f47f 100644 --- a/turbomoleio/testfiles/outputs/generation/aoforce/aceton_full/control +++ b/turbomoleio/testfiles/outputs/generation/aoforce/aceton_full/control @@ -1,5 +1,3 @@ -$title -dscf $symmetry cs $redundant file=coord $user-defined bonds file=coord @@ -19,9 +17,6 @@ h 5-10 \ basis =h def-SV(P) $basis file=basis $scfmo file=mos -$closed shells - a' 1-13 ( 2 ) - a" 1-3 ( 2 ) $scfiterlimit 200 $thize 0.10000000E-04 $thime 5 @@ -63,4 +58,9 @@ $rundimensions nbf(AO)=68 $last step define $scfconv 8 +$title +dscf +$closed shells + a' 1-13 ( 2 ) + a" 1-3 ( 2 ) $end diff --git a/turbomoleio/testfiles/outputs/generation/dscf/aceton_dftd3_tzvp/TM_v7.5.1/basis b/turbomoleio/testfiles/outputs/generation/dscf/aceton_dftd3_tzvp/TM_v7.5.1/basis new file mode 100644 index 0000000..8f17b7b --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/dscf/aceton_dftd3_tzvp/TM_v7.5.1/basis @@ -0,0 +1,79 @@ +$basis +* +o def-TZVP +# o (11s6p1d) / [5s3p1d] {62111/411/1} +* + 6 s + 27032.382631 0.21726302465E-03 + 4052.3871392 0.16838662199E-02 + 922.32722710 0.87395616265E-02 + 261.24070989 0.35239968808E-01 + 85.354641351 0.11153519115 + 31.035035245 0.25588953961 + 2 s + 12.260860728 0.39768730901 + 4.9987076005 0.24627849430 + 1 s + 1.1703108158 1.0000000000 + 1 s + 0.46474740994 1.0000000000 + 1 s + 0.18504536357 1.0000000000 + 4 p + 63.274954801 0.60685103418E-02 + 14.627049379 0.41912575824E-01 + 4.4501223456 0.16153841088 + 1.5275799647 0.35706951311 + 1 p + 0.52935117943 0.44794207502 + 1 p + 0.17478421270 0.24446069663 + 1 d + 1.2000000000 1.0000000000 +* +c def-TZVP +# c (11s6p1d) / [5s3p1d] {62111/411/1} +* + 6 s + 13575.349682 0.22245814352E-03 + 2035.2333680 0.17232738252E-02 + 463.22562359 0.89255715314E-02 + 131.20019598 0.35727984502E-01 + 42.853015891 0.11076259931 + 15.584185766 0.24295627626 + 2 s + 6.2067138508 0.41440263448 + 2.5764896527 0.23744968655 + 1 s + 0.57696339419 1.0000000000 + 1 s + 0.22972831358 1.0000000000 + 1 s + 0.95164440028E-01 1.0000000000 + 4 p + 34.697232244 0.53333657805E-02 + 7.9582622826 0.35864109092E-01 + 2.3780826883 0.14215873329 + 0.81433208183 0.34270471845 + 1 p + 0.28887547253 0.46445822433 + 1 p + 0.10056823671 0.24955789874 + 1 d + 0.80000000000 1.0000000000 +* +h def-TZVP +# h (5s1p) / [3s1p] {311/1} +* + 3 s + 34.061341000 0.60251978000E-02 + 5.1235746000 0.45021094000E-01 + 1.1646626000 0.20189726000 + 1 s + 0.32723041000 1.0000000000 + 1 s + 0.10307241000 1.0000000000 + 1 p + 0.80000000000 1.0000000000 +* +$end diff --git a/turbomoleio/testfiles/outputs/generation/dscf/aceton_dftd3_tzvp/TM_v7.5.1/control b/turbomoleio/testfiles/outputs/generation/dscf/aceton_dftd3_tzvp/TM_v7.5.1/control new file mode 100644 index 0000000..5ece1e1 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/dscf/aceton_dftd3_tzvp/TM_v7.5.1/control @@ -0,0 +1,65 @@ +$title +dscf +$symmetry c1 +$user-defined bonds file=coord +$coord file=coord +$optimize + internal off + redundant off + cartesian on + global off + basis off +$atoms +o 1 \ + basis =o def-TZVP +c 2-4 \ + basis =c def-TZVP +h 5-10 \ + basis =h def-TZVP +$basis file=basis +$scfmo file=mos +$closed shells + a 1-16 ( 2 ) +$scfiterlimit 200 +$thize 0.10000000E-04 +$thime 5 +$scfdamp start=0.300 step=0.050 min=0.100 +$scfdump +$scfintunit + unit=30 size=0 file=twoint +$scfdiis +$maxcor 500 MiB per_core +$scforbitalshift automatic=.1 +$drvopt + cartesian on + basis off + global off + hessian on + dipole on + nuclear polarizability +$interconversion off + qconv=1.d-7 + maxiter=25 +$coordinateupdate + dqmax=0.3 + interpolate on + statistics 5 +$forceupdate + ahlrichs numgeo=0 mingeo=3 maxgeo=4 modus= dynamic fail=0.3 + threig=0.005 reseig=0.005 thrbig=3.0 scale=1.00 damping=0.0 +$forceinit on + diag=default +$energy file=energy +$grad file=gradient +$forceapprox file=forceapprox +$dft + functional b-p + gridsize m3 +$scfconv 7 +$rundimensions + natoms=10 + nbf(CAO)=116 + nbf(AO)=112 +$last step define +$disp3 +$end diff --git a/turbomoleio/testfiles/outputs/generation/dscf/aceton_dftd3_tzvp/TM_v7.5.1/coord b/turbomoleio/testfiles/outputs/generation/dscf/aceton_dftd3_tzvp/TM_v7.5.1/coord new file mode 100644 index 0000000..270cb6e --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/dscf/aceton_dftd3_tzvp/TM_v7.5.1/coord @@ -0,0 +1,20 @@ +# RCS ################################################################ +# $Id: aceton,v 1.1 1992/04/14 14:49:59 chi Exp $ +# $Log: aceton,v $ +# Revision 1.1 1992/04/14 14:49:59 chi +# Initial revision +# +# RCS ################################################################ +$coord + 0.04340035195667 -2.43303953005673 0.00000000000000 o CO + 2.40289845461643 1.33092842109441 0.00000000000000 c CO + -2.44869436804036 1.25914649145556 0.00000000000000 c CH + -0.00810062594451 -0.18289217460735 0.00000000000000 c CH + 2.09020693848844 3.35088177662976 0.00000000000000 h CH + -4.02779836029488 -0.02916167026231 0.00000000000000 h CH + 3.51545226611740 0.83515949191596 1.64389798411415 h CH + 3.51545226611740 0.83515949191596 -1.64389798411415 h CH + -2.56998074753163 2.47145950405360 1.64993688181532 h CH + -2.56998074753163 2.47145950405360 -1.64993688181532 h CH +$user-defined bonds +$end diff --git a/turbomoleio/testfiles/outputs/generation/dscf/aceton_dftd3_tzvp/control b/turbomoleio/testfiles/outputs/generation/dscf/aceton_dftd3_tzvp/control index 5ece1e1..cc68fab 100644 --- a/turbomoleio/testfiles/outputs/generation/dscf/aceton_dftd3_tzvp/control +++ b/turbomoleio/testfiles/outputs/generation/dscf/aceton_dftd3_tzvp/control @@ -1,5 +1,3 @@ -$title -dscf $symmetry c1 $user-defined bonds file=coord $coord file=coord @@ -18,8 +16,6 @@ h 5-10 \ basis =h def-TZVP $basis file=basis $scfmo file=mos -$closed shells - a 1-16 ( 2 ) $scfiterlimit 200 $thize 0.10000000E-04 $thime 5 @@ -62,4 +58,8 @@ $rundimensions nbf(AO)=112 $last step define $disp3 +$title +dscf +$closed shells + a 1-16 ( 2 ) $end diff --git a/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad_cosmo/basis b/turbomoleio/testfiles/outputs/generation/dscf/h2o_std/TM_v7.5.1/basis similarity index 100% rename from turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad_cosmo/basis rename to turbomoleio/testfiles/outputs/generation/dscf/h2o_std/TM_v7.5.1/basis diff --git a/turbomoleio/testfiles/outputs/generation/dscf/h2o_std/TM_v7.5.1/control b/turbomoleio/testfiles/outputs/generation/dscf/h2o_std/TM_v7.5.1/control new file mode 100644 index 0000000..373686d --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/dscf/h2o_std/TM_v7.5.1/control @@ -0,0 +1,66 @@ +$title +dscf +$symmetry c2v +$redundant file=coord +$user-defined bonds file=coord +$coord file=coord +$intdef file=coord +$optimize + internal on + redundant off + cartesian off + global off + basis off +$atoms +o 1 \ + basis =o def-SV(P) +h 2-3 \ + basis =h def-SV(P) +$basis file=basis +$scfmo file=mos +$closed shells + a1 1-3 ( 2 ) + b1 1 ( 2 ) + b2 1 ( 2 ) +$scfiterlimit 200 +$thize 0.10000000E-04 +$thime 5 +$scfdamp start=0.300 step=0.050 min=0.100 +$scfdump +$scfintunit + unit=30 size=0 file=twoint +$scfdiis +$maxcor 500 MiB per_core +$scforbitalshift automatic=.1 +$drvopt + cartesian on + basis off + global off + hessian on + dipole on + nuclear polarizability +$interconversion off + qconv=1.d-7 + maxiter=25 +$coordinateupdate + dqmax=0.3 + interpolate on + statistics 5 +$forceupdate + ahlrichs numgeo=0 mingeo=3 maxgeo=4 modus= dynamic fail=0.3 + threig=0.005 reseig=0.005 thrbig=3.0 scale=1.00 damping=0.0 +$forceinit on + diag=default +$energy file=energy +$grad file=gradient +$forceapprox file=forceapprox +$dft + functional b-p + gridsize m3 +$scfconv 7 +$rundimensions + natoms=3 + nbf(CAO)=19 + nbf(AO)=18 +$last step define +$end diff --git a/turbomoleio/testfiles/outputs/generation/dscf/h2o_std/TM_v7.5.1/coord b/turbomoleio/testfiles/outputs/generation/dscf/h2o_std/TM_v7.5.1/coord new file mode 100644 index 0000000..fcfd9aa --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/dscf/h2o_std/TM_v7.5.1/coord @@ -0,0 +1,30 @@ +# RCS ################################################################ +# $Id: h2o,v 1.1 1992/04/14 15:03:13 chi Exp $ +# $Log: h2o,v $ +# Revision 1.1 1992/04/14 15:03:13 chi +# Initial revision +# +# RCS ################################################################ +$coord + 0.00000000000000 0.00000000000000 -0.72557892405437 o + 1.41713420892173 0.00000000000000 0.36278946202719 h + -1.41713420892173 0.00000000000000 0.36278946202719 h +$intdef +# definitions of internal coordinates + 1 k 1.0000000000000 stre 2 1 val= 1.78685 + 2 k 1.0000000000000 bend 2 3 1 val= 104.95100 +$redundant + number_of_atoms 3 + degrees_of_freedom 2 + internal_coordinates 2 + frozen_coordinates 0 +# definitions of redundant internals + 1 k 1.0000000000000 stre 1 2 val= 1.78685 + 2 k 1.0000000000000 bend 3 2 1 val= 104.95100 + 2 non zero eigenvalues of BmBt + 1 2.360224921 1 0 + 1 + 2 0.796203512 2 0 + 2 +$user-defined bonds +$end diff --git a/turbomoleio/testfiles/outputs/generation/dscf/h2o_std/control b/turbomoleio/testfiles/outputs/generation/dscf/h2o_std/control index 373686d..466efad 100644 --- a/turbomoleio/testfiles/outputs/generation/dscf/h2o_std/control +++ b/turbomoleio/testfiles/outputs/generation/dscf/h2o_std/control @@ -1,5 +1,3 @@ -$title -dscf $symmetry c2v $redundant file=coord $user-defined bonds file=coord @@ -18,10 +16,6 @@ h 2-3 \ basis =h def-SV(P) $basis file=basis $scfmo file=mos -$closed shells - a1 1-3 ( 2 ) - b1 1 ( 2 ) - b2 1 ( 2 ) $scfiterlimit 200 $thize 0.10000000E-04 $thime 5 @@ -63,4 +57,10 @@ $rundimensions nbf(CAO)=19 nbf(AO)=18 $last step define +$title +dscf +$closed shells + a1 1-3 ( 2 ) + b1 1 ( 2 ) + b2 1 ( 2 ) $end diff --git a/turbomoleio/testfiles/outputs/generation/dscf/h2o_uhf/TM_v7.5.1/basis b/turbomoleio/testfiles/outputs/generation/dscf/h2o_uhf/TM_v7.5.1/basis new file mode 100644 index 0000000..0f3cddc --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/dscf/h2o_uhf/TM_v7.5.1/basis @@ -0,0 +1,35 @@ +$basis +* +o def-SV(P) +# o (7s4p1d) / [3s2p1d] {511/31/1} +* + 5 s + 2266.1767785 -0.53431809926E-02 + 340.87010191 -0.39890039230E-01 + 77.363135167 -0.17853911985 + 21.479644940 -0.46427684959 + 6.6589433124 -0.44309745172 + 1 s + 0.80975975668 1.0000000000 + 1 s + 0.25530772234 1.0000000000 + 3 p + 17.721504317 0.43394573193E-01 + 3.8635505440 0.23094120765 + 1.0480920883 0.51375311064 + 1 p + 0.27641544411 1.0000000000 + 1 d + 1.2000000000 1.0000000000 +* +h def-SV(P) +# h (4s) / [2s] {31} +* + 3 s + 13.010701000 0.19682158000E-01 + 1.9622572000 0.13796524000 + 0.44453796000 0.47831935000 + 1 s + 0.12194962000 1.0000000000 +* +$end diff --git a/turbomoleio/testfiles/outputs/generation/dscf/h2o_uhf/TM_v7.5.1/control b/turbomoleio/testfiles/outputs/generation/dscf/h2o_uhf/TM_v7.5.1/control new file mode 100644 index 0000000..ca9d021 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/dscf/h2o_uhf/TM_v7.5.1/control @@ -0,0 +1,67 @@ +$title +dscf +$symmetry c1 +$redundant file=coord +$user-defined bonds file=coord +$coord file=coord +$optimize + internal off + redundant off + cartesian on + global off + basis off +$atoms +o 1 \ + basis =o def-SV(P) +h 2-3 \ + basis =h def-SV(P) +$basis file=basis +$uhfmo_alpha file=alpha +$uhfmo_beta file=beta +$uhf +$alpha shells + a 1-5 ( 1 ) +$beta shells + a 1-4 ( 1 ) +$scfiterlimit 200 +$thize 0.10000000E-04 +$thime 5 +$scfdamp start=1.000 step=0.050 min=0.100 +$scfdump +$scfintunit + unit=30 size=0 file=twoint +$scfdiis +$maxcor 500 MiB per_core +$drvopt + cartesian on + basis off + global off + hessian on + dipole on + nuclear polarizability +$interconversion off + qconv=1.d-7 + maxiter=25 +$coordinateupdate + dqmax=0.3 + interpolate on + statistics 5 +$forceupdate + ahlrichs numgeo=0 mingeo=3 maxgeo=4 modus= dynamic fail=0.3 + threig=0.005 reseig=0.005 thrbig=3.0 scale=1.00 damping=0.0 +$forceinit on + diag=default +$energy file=energy +$grad file=gradient +$forceapprox file=forceapprox +$dft + functional b-p + gridsize m3 +$scfconv 7 +$scforbitalshift closedshell=.05 +$rundimensions + natoms=3 + nbf(CAO)=19 + nbf(AO)=18 +$last step define +$end diff --git a/turbomoleio/testfiles/outputs/generation/dscf/h2o_uhf/TM_v7.5.1/coord b/turbomoleio/testfiles/outputs/generation/dscf/h2o_uhf/TM_v7.5.1/coord new file mode 100644 index 0000000..e5b5b31 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/dscf/h2o_uhf/TM_v7.5.1/coord @@ -0,0 +1,26 @@ +# RCS ################################################################ +# $Id: h2o,v 1.1 1992/04/14 15:03:13 chi Exp $ +# $Log: h2o,v $ +# Revision 1.1 1992/04/14 15:03:13 chi +# Initial revision +# +# RCS ################################################################ +$coord + 0.00000000000000 0.00000000000000 -0.72557892405437 o + 1.41713420892173 0.00000000000000 0.36278946202719 h + -1.41713420892173 0.00000000000000 0.36278946202719 h +$redundant + number_of_atoms 3 + degrees_of_freedom 2 + internal_coordinates 2 + frozen_coordinates 0 +# definitions of redundant internals + 1 k 1.0000000000000 stre 1 2 val= 1.78685 + 2 k 1.0000000000000 bend 3 2 1 val= 104.95100 + 2 non zero eigenvalues of BmBt + 1 2.360224921 1 0 + 1 + 2 0.796203512 2 0 + 2 +$user-defined bonds +$end diff --git a/turbomoleio/testfiles/outputs/generation/dscf/h2o_uhf/control b/turbomoleio/testfiles/outputs/generation/dscf/h2o_uhf/control index ca9d021..0a8909c 100644 --- a/turbomoleio/testfiles/outputs/generation/dscf/h2o_uhf/control +++ b/turbomoleio/testfiles/outputs/generation/dscf/h2o_uhf/control @@ -1,5 +1,3 @@ -$title -dscf $symmetry c1 $redundant file=coord $user-defined bonds file=coord @@ -19,10 +17,6 @@ $basis file=basis $uhfmo_alpha file=alpha $uhfmo_beta file=beta $uhf -$alpha shells - a 1-5 ( 1 ) -$beta shells - a 1-4 ( 1 ) $scfiterlimit 200 $thize 0.10000000E-04 $thime 5 @@ -64,4 +58,10 @@ $rundimensions nbf(CAO)=19 nbf(AO)=18 $last step define +$title +dscf +$alpha shells + a 1-5 ( 1 ) +$beta shells + a 1-4 ( 1 ) $end diff --git a/turbomoleio/testfiles/outputs/generation/dscf/nh3_cosmo_fermi/TM_v7.5.1/basis b/turbomoleio/testfiles/outputs/generation/dscf/nh3_cosmo_fermi/TM_v7.5.1/basis new file mode 100644 index 0000000..8d3f543 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/dscf/nh3_cosmo_fermi/TM_v7.5.1/basis @@ -0,0 +1,35 @@ +$basis +* +n def-SV(P) +# n (7s4p1d) / [3s2p1d] {511/31/1} +* + 5 s + 1712.8415853 -0.53934125305E-02 + 257.64812677 -0.40221581118E-01 + 58.458245853 -0.17931144990 + 16.198367905 -0.46376317823 + 5.0052600809 -0.44171422662 + 1 s + 0.58731856571 1.0000000000 + 1 s + 0.18764592253 1.0000000000 + 3 p + 13.571470233 -0.40072398852E-01 + 2.9257372874 -0.21807045028 + 0.79927750754 -0.51294466049 + 1 p + 0.21954348034 1.0000000000 + 1 d + 1.0000000000 1.0000000000 +* +h def-SV(P) +# h (4s) / [2s] {31} +* + 3 s + 13.010701000 0.19682158000E-01 + 1.9622572000 0.13796524000 + 0.44453796000 0.47831935000 + 1 s + 0.12194962000 1.0000000000 +* +$end diff --git a/turbomoleio/testfiles/outputs/generation/dscf/nh3_cosmo_fermi/TM_v7.5.1/control b/turbomoleio/testfiles/outputs/generation/dscf/nh3_cosmo_fermi/TM_v7.5.1/control new file mode 100644 index 0000000..5a83ee1 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/dscf/nh3_cosmo_fermi/TM_v7.5.1/control @@ -0,0 +1,65 @@ +$title +dscf +$symmetry c1 +$user-defined bonds file=coord +$coord file=coord +$optimize + internal off + redundant off + cartesian on + global off + basis off +$atoms +n 1 \ + basis =n def-SV(P) +h 2-4 \ + basis =h def-SV(P) +$basis file=basis +$scfmo file=mos +$closed shells + a 1-5 ( 2 ) +$scfiterlimit 200 +$thize 0.10000000E-04 +$thime 5 +$scfdamp start=0.300 step=0.050 min=0.100 +$scfdump +$scfintunit + unit=30 size=0 file=twoint +$scfdiis +$maxcor 500 MiB per_core +$scforbitalshift automatic=.1 +$drvopt + cartesian on + basis off + global off + hessian on + dipole on + nuclear polarizability +$interconversion off + qconv=1.d-7 + maxiter=25 +$coordinateupdate + dqmax=0.3 + interpolate on + statistics 5 +$forceupdate + ahlrichs numgeo=0 mingeo=3 maxgeo=4 modus= dynamic fail=0.3 + threig=0.005 reseig=0.005 thrbig=3.0 scale=1.00 damping=0.0 +$forceinit on + diag=default +$energy file=energy +$grad file=gradient +$forceapprox file=forceapprox +$dft + functional b-p + gridsize m3 +$scfconv 7 +$rundimensions + natoms=4 + nbf(CAO)=21 + nbf(AO)=20 +$last step define +$cosmo +$cosmo_out = out.cosmo +$fermi tmstrt=500 tmend=50 tmfac=0.9 hlcrt=0.2 +$end diff --git a/turbomoleio/testfiles/outputs/generation/dscf/nh3_cosmo_fermi/TM_v7.5.1/coord b/turbomoleio/testfiles/outputs/generation/dscf/nh3_cosmo_fermi/TM_v7.5.1/coord new file mode 100644 index 0000000..cc784d1 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/dscf/nh3_cosmo_fermi/TM_v7.5.1/coord @@ -0,0 +1,14 @@ +# RCS ################################################################ +# $Id: nh3,v 1.1 1992/04/14 15:03:21 chi Exp $ +# $Log: nh3,v $ +# Revision 1.1 1992/04/14 15:03:21 chi +# Initial revision +# +# RCS ################################################################ +$coord + 0.00000000000000 0.00000000000000 0.12917062194577 n + 1.75612466223131 0.00000000000000 -0.59831613718919 h + -0.87806233111566 1.52084856970468 -0.59831613718919 h + -0.87806233111566 -1.52084856970468 -0.59831613718919 h +$user-defined bonds +$end diff --git a/turbomoleio/testfiles/outputs/generation/dscf/nh3_cosmo_fermi/control b/turbomoleio/testfiles/outputs/generation/dscf/nh3_cosmo_fermi/control index 5a83ee1..4749fa8 100644 --- a/turbomoleio/testfiles/outputs/generation/dscf/nh3_cosmo_fermi/control +++ b/turbomoleio/testfiles/outputs/generation/dscf/nh3_cosmo_fermi/control @@ -1,5 +1,3 @@ -$title -dscf $symmetry c1 $user-defined bonds file=coord $coord file=coord @@ -16,8 +14,6 @@ h 2-4 \ basis =h def-SV(P) $basis file=basis $scfmo file=mos -$closed shells - a 1-5 ( 2 ) $scfiterlimit 200 $thize 0.10000000E-04 $thime 5 @@ -62,4 +58,8 @@ $last step define $cosmo $cosmo_out = out.cosmo $fermi tmstrt=500 tmend=50 tmfac=0.9 hlcrt=0.2 +$title +dscf +$closed shells + a 1-5 ( 2 ) $end diff --git a/turbomoleio/testfiles/outputs/generation/dscf/nh3_dftd1/TM_v7.5.1/basis b/turbomoleio/testfiles/outputs/generation/dscf/nh3_dftd1/TM_v7.5.1/basis new file mode 100644 index 0000000..8d3f543 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/dscf/nh3_dftd1/TM_v7.5.1/basis @@ -0,0 +1,35 @@ +$basis +* +n def-SV(P) +# n (7s4p1d) / [3s2p1d] {511/31/1} +* + 5 s + 1712.8415853 -0.53934125305E-02 + 257.64812677 -0.40221581118E-01 + 58.458245853 -0.17931144990 + 16.198367905 -0.46376317823 + 5.0052600809 -0.44171422662 + 1 s + 0.58731856571 1.0000000000 + 1 s + 0.18764592253 1.0000000000 + 3 p + 13.571470233 -0.40072398852E-01 + 2.9257372874 -0.21807045028 + 0.79927750754 -0.51294466049 + 1 p + 0.21954348034 1.0000000000 + 1 d + 1.0000000000 1.0000000000 +* +h def-SV(P) +# h (4s) / [2s] {31} +* + 3 s + 13.010701000 0.19682158000E-01 + 1.9622572000 0.13796524000 + 0.44453796000 0.47831935000 + 1 s + 0.12194962000 1.0000000000 +* +$end diff --git a/turbomoleio/testfiles/outputs/generation/dscf/nh3_dftd1/TM_v7.5.1/control b/turbomoleio/testfiles/outputs/generation/dscf/nh3_dftd1/TM_v7.5.1/control new file mode 100644 index 0000000..0f10587 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/dscf/nh3_dftd1/TM_v7.5.1/control @@ -0,0 +1,65 @@ +$title +dscf +$symmetry c3v +$user-defined bonds file=coord +$coord file=coord +$intdef file=coord +$optimize + internal on + redundant off + cartesian off + global off + basis off +$atoms +n 1 \ + basis =n def-SV(P) +h 2-4 \ + basis =h def-SV(P) +$basis file=basis +$scfmo file=mos +$closed shells + a1 1-3 ( 2 ) + e 1 ( 2 ) +$scfiterlimit 200 +$thize 0.10000000E-04 +$thime 5 +$scfdamp start=0.300 step=0.050 min=0.100 +$scfdump +$scfintunit + unit=30 size=0 file=twoint +$scfdiis +$maxcor 500 MiB per_core +$scforbitalshift automatic=.1 +$drvopt + cartesian on + basis off + global off + hessian on + dipole on + nuclear polarizability +$interconversion off + qconv=1.d-7 + maxiter=25 +$coordinateupdate + dqmax=0.3 + interpolate on + statistics 5 +$forceupdate + ahlrichs numgeo=0 mingeo=3 maxgeo=4 modus= dynamic fail=0.3 + threig=0.005 reseig=0.005 thrbig=3.0 scale=1.00 damping=0.0 +$forceinit on + diag=default +$energy file=energy +$grad file=gradient +$forceapprox file=forceapprox +$dft + functional b-p + gridsize m3 +$scfconv 7 +$rundimensions + natoms=4 + nbf(CAO)=21 + nbf(AO)=20 +$last step define +$olddisp +$end diff --git a/turbomoleio/testfiles/outputs/generation/dscf/nh3_dftd1/TM_v7.5.1/coord b/turbomoleio/testfiles/outputs/generation/dscf/nh3_dftd1/TM_v7.5.1/coord new file mode 100644 index 0000000..2881b1d --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/dscf/nh3_dftd1/TM_v7.5.1/coord @@ -0,0 +1,20 @@ +# RCS ################################################################ +# $Id: nh3,v 1.1 1992/04/14 15:03:21 chi Exp $ +# $Log: nh3,v $ +# Revision 1.1 1992/04/14 15:03:21 chi +# Initial revision +# +# RCS ################################################################ +$coord + -0.00000000000000 0.00000000000000 0.54561506935122 n + -0.87806233111565 1.52084856970468 -0.18187168978373 h + -0.87806233111565 -1.52084856970468 -0.18187168978373 h + 1.75612466223131 0.00000000000000 -0.18187168978373 h +$intdef +# definitions of internal coordinates + 1 k 1.0000000000000 stre 4 1 val= 1.90084 + 2 k 1.0000000000000 bend 4 3 1 val= 106.27756 + 1.0000000000000 bend 3 2 1 + 1.0000000000000 bend 2 4 1 +$user-defined bonds +$end diff --git a/turbomoleio/testfiles/outputs/generation/dscf/nh3_dftd1/control b/turbomoleio/testfiles/outputs/generation/dscf/nh3_dftd1/control index 0f10587..e6ad4f3 100644 --- a/turbomoleio/testfiles/outputs/generation/dscf/nh3_dftd1/control +++ b/turbomoleio/testfiles/outputs/generation/dscf/nh3_dftd1/control @@ -1,5 +1,3 @@ -$title -dscf $symmetry c3v $user-defined bonds file=coord $coord file=coord @@ -17,9 +15,6 @@ h 2-4 \ basis =h def-SV(P) $basis file=basis $scfmo file=mos -$closed shells - a1 1-3 ( 2 ) - e 1 ( 2 ) $scfiterlimit 200 $thize 0.10000000E-04 $thime 5 @@ -62,4 +57,9 @@ $rundimensions nbf(AO)=20 $last step define $olddisp +$title +dscf +$closed shells + a1 1-3 ( 2 ) + e 1 ( 2 ) $end diff --git a/turbomoleio/testfiles/outputs/generation/dscf/nh3_dftd1/coord b/turbomoleio/testfiles/outputs/generation/dscf/nh3_dftd1/coord index 2881b1d..e83cb4b 100644 --- a/turbomoleio/testfiles/outputs/generation/dscf/nh3_dftd1/coord +++ b/turbomoleio/testfiles/outputs/generation/dscf/nh3_dftd1/coord @@ -6,10 +6,10 @@ # # RCS ################################################################ $coord - -0.00000000000000 0.00000000000000 0.54561506935122 n - -0.87806233111565 1.52084856970468 -0.18187168978373 h - -0.87806233111565 -1.52084856970468 -0.18187168978373 h - 1.75612466223131 0.00000000000000 -0.18187168978373 h + -0.00000000000000 0.00000000000000 0.54561506935121 n + -0.87806233111565 1.52084856970468 -0.18187168978374 h + -0.87806233111565 -1.52084856970468 -0.18187168978374 h + 1.75612466223131 0.00000000000000 -0.18187168978374 h $intdef # definitions of internal coordinates 1 k 1.0000000000000 stre 4 1 val= 1.90084 diff --git a/turbomoleio/testfiles/outputs/generation/egrad/h2o_sym/TM_v7.5.1/auxbasis b/turbomoleio/testfiles/outputs/generation/egrad/h2o_sym/TM_v7.5.1/auxbasis new file mode 100644 index 0000000..95e3afe --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/egrad/h2o_sym/TM_v7.5.1/auxbasis @@ -0,0 +1,48 @@ +$jbas +* +o def-SV(P) +# o (8s3p3d1f) / [6s3p3d1f] {311111/111/111/1} +* + 3 s + 896.10357000 0.59760749700 + 269.72523200 1.5358077900 + 85.615077000 4.0470231300 + 1 s + 28.445035000 3.4984208300 + 1 s + 9.8069810000 -0.24387498700E-01 + 1 s + 3.4747220000 0.32147717800 + 1 s + 1.2519210000 1.1625987000 + 1 s + 0.45361300000 0.25268306900 + 1 p + 0.61470886295 -0.85578439300E-01 + 1 p + 1.4753012711 0.41799959400E-01 + 1 p + 3.6956296840 -0.58551078600E-01 + 1 d + 7.6526720000 0.88298462700E-01 + 1 d + 2.2178680000 0.11926244900 + 1 d + 0.68233700000 0.44873891700E-01 + 1 f + 2.1917808219 1.0000000000 +* +h def-SV(P) +# h (4s2p) / [2s1p] {31/2} +* + 3 s + 9.3081300000 0.34466183000E-01 + 2.3067180000 0.12253379600 + 0.75201200000 0.18250021100 + 1 s + 0.27397800000 0.22150547900E-01 + 2 p + 2.0327040000 0.29513659100E-01 + 0.79025200000 0.32755872800E-01 +* +$end diff --git a/turbomoleio/testfiles/outputs/generation/egrad/h2o_sym/TM_v7.5.1/basis b/turbomoleio/testfiles/outputs/generation/egrad/h2o_sym/TM_v7.5.1/basis new file mode 100644 index 0000000..0f3cddc --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/egrad/h2o_sym/TM_v7.5.1/basis @@ -0,0 +1,35 @@ +$basis +* +o def-SV(P) +# o (7s4p1d) / [3s2p1d] {511/31/1} +* + 5 s + 2266.1767785 -0.53431809926E-02 + 340.87010191 -0.39890039230E-01 + 77.363135167 -0.17853911985 + 21.479644940 -0.46427684959 + 6.6589433124 -0.44309745172 + 1 s + 0.80975975668 1.0000000000 + 1 s + 0.25530772234 1.0000000000 + 3 p + 17.721504317 0.43394573193E-01 + 3.8635505440 0.23094120765 + 1.0480920883 0.51375311064 + 1 p + 0.27641544411 1.0000000000 + 1 d + 1.2000000000 1.0000000000 +* +h def-SV(P) +# h (4s) / [2s] {31} +* + 3 s + 13.010701000 0.19682158000E-01 + 1.9622572000 0.13796524000 + 0.44453796000 0.47831935000 + 1 s + 0.12194962000 1.0000000000 +* +$end diff --git a/turbomoleio/testfiles/outputs/generation/egrad/h2o_sym/TM_v7.5.1/control b/turbomoleio/testfiles/outputs/generation/egrad/h2o_sym/TM_v7.5.1/control new file mode 100644 index 0000000..bee9eaf --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/egrad/h2o_sym/TM_v7.5.1/control @@ -0,0 +1,73 @@ +$title +ridft_escf +$symmetry c2v +$redundant file=coord +$user-defined bonds file=coord +$coord file=coord +$optimize + internal on + redundant on + cartesian off + global off + basis off +$atoms +o 1 \ + basis =o def-SV(P) \ + jbas =o def-SV(P) +h 2-3 \ + basis =h def-SV(P) \ + jbas =h def-SV(P) +$basis file=basis +$scfmo file=mos +$closed shells + a1 1-3 ( 2 ) + b1 1 ( 2 ) + b2 1 ( 2 ) +$scfiterlimit 200 +$thize 0.10000000E-04 +$thime 5 +$scfdamp start=0.300 step=0.050 min=0.100 +$scfdump +$scfintunit + unit=30 size=0 file=twoint +$scfdiis +$scforbitalshift automatic=.1 +$drvopt + cartesian on + basis off + global off + hessian on + dipole on + nuclear polarizability +$interconversion off + qconv=1.d-7 + maxiter=25 +$coordinateupdate + dqmax=0.3 + interpolate on + statistics 5 +$forceupdate + ahlrichs numgeo=0 mingeo=3 maxgeo=4 modus= dynamic fail=0.3 + threig=0.005 reseig=0.005 thrbig=3.0 scale=1.00 damping=0.0 +$forceinit on + diag=default +$energy file=energy +$grad file=gradient +$forceapprox file=forceapprox +$scfinstab rpas +$soes + a1 3 +$denconv 1d-7 +$dft + functional b-p + gridsize m3 +$scfconv 7 +$ricore 500 +$rij +$jbas file=auxbasis +$rundimensions + natoms=3 + nbf(CAO)=19 + nbf(AO)=18 +$last step define +$end diff --git a/turbomoleio/testfiles/outputs/generation/egrad/h2o_sym/TM_v7.5.1/coord b/turbomoleio/testfiles/outputs/generation/egrad/h2o_sym/TM_v7.5.1/coord new file mode 100644 index 0000000..9096b45 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/egrad/h2o_sym/TM_v7.5.1/coord @@ -0,0 +1,26 @@ +# RCS ################################################################ +# $Id: h2o,v 1.1 1992/04/14 15:03:13 chi Exp $ +# $Log: h2o,v $ +# Revision 1.1 1992/04/14 15:03:13 chi +# Initial revision +# +# RCS ################################################################ +$coord + 0.00000000000000 0.00000000000000 -0.72557892000000 o + 1.41713421000000 0.00000000000000 0.36278946000000 h + -1.41713421000000 0.00000000000000 0.36278946000000 h +$redundant + number_of_atoms 3 + degrees_of_freedom 2 + internal_coordinates 2 + frozen_coordinates 0 +# definitions of redundant internals + 1 k 1.0000000000000 stre 1 2 val= 1.78685 + 2 k 1.0000000000000 bend 3 2 1 val= 104.95100 + 2 non zero eigenvalues of BmBt + 1 2.360224921 1 0 + 1 + 2 0.796203514 2 0 + 2 +$user-defined bonds +$end diff --git a/turbomoleio/testfiles/outputs/generation/egrad/h2o_sym/control b/turbomoleio/testfiles/outputs/generation/egrad/h2o_sym/control index bee9eaf..34ba7d0 100644 --- a/turbomoleio/testfiles/outputs/generation/egrad/h2o_sym/control +++ b/turbomoleio/testfiles/outputs/generation/egrad/h2o_sym/control @@ -1,5 +1,3 @@ -$title -ridft_escf $symmetry c2v $redundant file=coord $user-defined bonds file=coord @@ -19,10 +17,6 @@ h 2-3 \ jbas =h def-SV(P) $basis file=basis $scfmo file=mos -$closed shells - a1 1-3 ( 2 ) - b1 1 ( 2 ) - b2 1 ( 2 ) $scfiterlimit 200 $thize 0.10000000E-04 $thime 5 @@ -70,4 +64,11 @@ $rundimensions nbf(CAO)=19 nbf(AO)=18 $last step define +$maxcor 500 MiB per_core +$title +ridft_escf +$closed shells + a1 1-3 ( 2 ) + b1 1 ( 2 ) + b2 1 ( 2 ) $end diff --git a/turbomoleio/testfiles/outputs/generation/egrad/h3cbr_nosym/TM_v7.5.1/basis b/turbomoleio/testfiles/outputs/generation/egrad/h3cbr_nosym/TM_v7.5.1/basis new file mode 100644 index 0000000..b50d0e1 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/egrad/h3cbr_nosym/TM_v7.5.1/basis @@ -0,0 +1,81 @@ +$basis +* +c def-SV(P) +# c (7s4p1d) / [3s2p1d] {511/31/1} +* + 5 s + 1238.4016938 0.54568832082E-02 + 186.29004992 0.40638409211E-01 + 42.251176346 0.18025593888 + 11.676557932 0.46315121755 + 3.5930506482 0.44087173314 + 1 s + 0.40245147363 1.0000000000 + 1 s + 0.13090182668 1.0000000000 + 3 p + 9.4680970621 0.38387871728E-01 + 2.0103545142 0.21117025112 + 0.54771004707 0.51328172114 + 1 p + 0.15268613795 1.0000000000 + 1 d + 0.80000000000 1.0000000000 +* +h def-SV(P) +# h (4s) / [2s] {31} +* + 3 s + 13.010701000 0.19682158000E-01 + 1.9622572000 0.13796524000 + 0.44453796000 0.47831935000 + 1 s + 0.12194962000 1.0000000000 +* +br def-SV(P) +# br (14s10p6d) / [5s4p3d] {63311/5311/411} +* + 6 s + 113286.38776 0.14283037779E-02 + 17009.626303 0.10950417496E-01 + 3870.1842567 0.54421006604E-01 + 1093.0357227 0.19047907695 + 356.39721797 0.39024642737 + 123.12539643 0.30814432514 + 3 s + 236.74084007 -0.11228065671 + 28.468661070 0.64775962312 + 11.883443722 0.44235575986 + 3 s + 21.269633312 -0.22642576323 + 3.6129226841 0.73823712008 + 1.6626648969 0.42683868694 + 1 s + 0.34823793232 1.0000000000 + 1 s + 0.13019031394 1.0000000000 + 5 p + 1560.2801881 0.87166669072E-02 + 368.47859205 0.66243637420E-01 + 117.22978849 0.26495610385 + 42.648909248 0.53839160587 + 16.087225096 0.36579387888 + 3 p + 8.6352810058 0.34248787366 + 3.5613665502 0.57500678213 + 1.5292626609 0.24330394172 + 1 p + 0.53064294848 1.0000000000 + 1 p + 0.15702758965 1.0000000000 + 4 d + 104.85518642 0.22650147581E-01 + 30.281143688 0.13455483230 + 10.651394267 0.36474454537 + 3.8699456233 0.49044587056 + 1 d + 1.3240876762 0.27137289040 + 1 d + 0.38900000000 1.0000000000 +* +$end diff --git a/turbomoleio/testfiles/outputs/generation/egrad/h3cbr_nosym/TM_v7.5.1/control b/turbomoleio/testfiles/outputs/generation/egrad/h3cbr_nosym/TM_v7.5.1/control new file mode 100644 index 0000000..7532044 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/egrad/h3cbr_nosym/TM_v7.5.1/control @@ -0,0 +1,69 @@ +$title +dscf_escf +$symmetry c1 +$redundant file=coord +$user-defined bonds file=coord +$coord file=coord +$intdef file=coord +$optimize + internal on + redundant on + cartesian off + global off + basis off +$atoms +c 1 \ + basis =c def-SV(P) +h 2-4 \ + basis =h def-SV(P) +br 5 \ + basis =br def-SV(P) +$basis file=basis +$scfmo file=mos +$closed shells + a 1-22 ( 2 ) +$scfiterlimit 200 +$thize 0.10000000E-04 +$thime 5 +$scfdamp start=0.300 step=0.050 min=0.100 +$scfdump +$scfintunit + unit=30 size=0 file=twoint +$scfdiis +$scforbitalshift automatic=.1 +$drvopt + cartesian on + basis off + global off + hessian on + dipole on + nuclear polarizability +$interconversion off + qconv=1.d-7 + maxiter=25 +$coordinateupdate + dqmax=0.3 + interpolate on + statistics 5 +$forceupdate + ahlrichs numgeo=0 mingeo=3 maxgeo=4 modus= dynamic fail=0.3 + threig=0.005 reseig=0.005 thrbig=3.0 scale=1.00 damping=0.0 +$forceinit on + diag=default +$energy file=energy +$grad file=gradient +$forceapprox file=forceapprox +$scfinstab rpas +$soes + a 10 +$denconv 1d-7 +$dft + functional b-p + gridsize m3 +$scfconv 7 +$rundimensions + natoms=5 + nbf(CAO)=56 + nbf(AO)=52 +$last step define +$end diff --git a/turbomoleio/testfiles/outputs/generation/egrad/h3cbr_nosym/TM_v7.5.1/coord b/turbomoleio/testfiles/outputs/generation/egrad/h3cbr_nosym/TM_v7.5.1/coord new file mode 100644 index 0000000..471e7ab --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/egrad/h3cbr_nosym/TM_v7.5.1/coord @@ -0,0 +1,102 @@ +$coord + 0.00000000000000 0.00000000000000 -3.04112594498063 c + 0.97212284288836 1.68376615508094 -3.67601852139793 h + 0.97212284288836 -1.68376615508094 -3.67601852139793 h + -1.94424568577672 0.00000000000000 -3.67601852139793 h + 0.00000000000000 0.00000000000000 0.59622031387071 br +$intdef +# definitions of internal coordinates + 1 k 1.0000000000000 stre 1 2 val= 2.04528 + 2 k 1.0000000000000 stre 1 5 val= 3.63735 + 3 d 1.0000000000000 stre 1 3 val= 2.04528 + 4 d 1.0000000000000 stre 1 4 val= 2.04528 + 5 d 1.0000000000000 stre 1 2 val= 2.04528 + 6 k -0.4985397119995 bend 3 5 1 val= -0.13720 + 0.1236562681788 bend 4 5 1 + -0.4859704547599 bend 4 3 1 + 0.4859704547599 bend 2 5 1 + -0.1236562681788 bend 2 3 1 + 0.4985397119995 bend 2 4 1 + 7 d -0.1044367946075 bend 3 5 1 val= -0.36090 + 0.6446400761494 bend 4 5 1 + 0.2711680810019 bend 4 3 1 + -0.2711680810019 bend 2 5 1 + -0.6446400761494 bend 2 3 1 + 0.1044367946075 bend 2 4 1 + 8 d 0.4904601018346 bend 3 5 1 val= -1.36864 + 0.2629606426107 bend 4 5 1 + -0.4362345572581 bend 4 3 1 + 0.4362345572581 bend 2 5 1 + -0.2629606426107 bend 2 3 1 + -0.4904601018346 bend 2 4 1 + 9 i 0.5773502691896 bend 3 5 1 + -0.2886751345948 bend 4 5 1 + -0.2886751345948 bend 4 3 1 + -0.2886751345948 bend 2 5 1 + -0.2886751345948 bend 2 3 1 + 0.5773502691896 bend 2 4 1 + 10 i -0.5000000000000 bend 4 5 1 + 0.5000000000000 bend 4 3 1 + 0.5000000000000 bend 2 5 1 + -0.5000000000000 bend 2 3 1 +$user-defined bonds +$redundant + number_of_atoms 5 + degrees_of_freedom 9 + internal_coordinates 9 + frozen_coordinates 0 +# definitions of redundant internals + 1 k 1.0000000000000 stre 1 4 val= 2.04528 + 2 k 1.0000000000000 stre 1 3 val= 2.04528 + 3 k 1.0000000000000 stre 1 2 val= 2.04528 + 4 k 1.0000000000000 stre 1 5 val= 3.63735 + 5 k -0.3970112910274 bend 3 4 1 val= 1.60478 + -0.3970112910274 bend 2 4 1 + -0.3970112910274 bend 2 3 1 + 0.4191841697036 bend 5 4 1 + 0.4191841697036 bend 5 3 1 + 0.4191841697036 bend 5 2 1 + 6 k 0.6366830358876 bend 3 4 1 val= 0.00000 + -0.6742966281618 bend 2 4 1 + 0.0376135922742 bend 2 3 1 + -0.0150841936594 bend 5 4 1 + 0.2704134412087 bend 5 3 1 + -0.2553292475493 bend 5 2 1 + 7 k 0.4110215574076 bend 3 4 1 val= -0.00000 + 0.3458729045335 bend 2 4 1 + -0.7568944619411 bend 2 3 1 + 0.3035376828789 bend 5 4 1 + -0.1387055465348 bend 5 3 1 + -0.1648321363441 bend 5 2 1 + 8 k -0.2331660246762 bend 3 4 1 val= 0.00000 + -0.0522281160626 bend 2 4 1 + 0.2853941407388 bend 2 3 1 + 0.7116521498973 bend 5 4 1 + -0.1302348078514 bend 5 3 1 + -0.5814173420459 bend 5 2 1 + 9 k -0.1949263008487 bend 3 4 1 val= -0.00000 + 0.2993908510934 bend 2 4 1 + -0.1044645502447 bend 2 3 1 + -0.2604903575709 bend 5 4 1 + 0.7465540192543 bend 5 3 1 + -0.4860636616834 bend 5 2 1 + 9 non zero eigenvalues of BmBt + 1 3.280806228 1 0 + 1 + 2 3.111137837 2 0 + 2 + 3 3.111137837 3 0 + 3 + 4 1.000000000 4 0 + 4 + 5 0.728724683 5 0 + 5 + 6 0.728724683 6 0 + 6 + 7 0.691117489 7 0 + 7 + 8 0.432501654 8 0 + 8 + 9 0.432501654 9 0 + 9 +$end diff --git a/turbomoleio/testfiles/outputs/generation/egrad/h3cbr_nosym/control b/turbomoleio/testfiles/outputs/generation/egrad/h3cbr_nosym/control index 7532044..5410e6c 100644 --- a/turbomoleio/testfiles/outputs/generation/egrad/h3cbr_nosym/control +++ b/turbomoleio/testfiles/outputs/generation/egrad/h3cbr_nosym/control @@ -1,5 +1,3 @@ -$title -dscf_escf $symmetry c1 $redundant file=coord $user-defined bonds file=coord @@ -20,8 +18,6 @@ br 5 \ basis =br def-SV(P) $basis file=basis $scfmo file=mos -$closed shells - a 1-22 ( 2 ) $scfiterlimit 200 $thize 0.10000000E-04 $thime 5 @@ -66,4 +62,9 @@ $rundimensions nbf(CAO)=56 nbf(AO)=52 $last step define +$maxcor 500 MiB per_core +$title +dscf_escf +$closed shells + a 1-22 ( 2 ) $end diff --git a/turbomoleio/testfiles/outputs/generation/escf/Al6_columns/TM_v7.5.1/control b/turbomoleio/testfiles/outputs/generation/escf/Al6_columns/TM_v7.5.1/control new file mode 100644 index 0000000..f5a0013 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/escf/Al6_columns/TM_v7.5.1/control @@ -0,0 +1,917 @@ +$title +Al6 triplett +$operating system unix +$symmetry d3h +$user-defined bonds file=coord +$coord file=coord +$intdef file=coord +$atoms +al 1-6 \ + jbas=al def-SV(P) \ + basis =al def-SV(P) +$pople AO +$basis +* +al def-SV(P) +* + 5 s + 5887.5727030 .13483347987E-02 + 885.61225996 .10071576809E-01 + 201.13604899 .45132454056E-01 + 56.284974674 .11461268043 + 17.229551243 .10159608943 + 3 s + 29.340249922 .69347454208E-01 + 3.0439630420 -.42528117679 + 1.1285539518 -.41449832210 + 1 s + .14234175160 1.0000000000 + 1 s + .54400192313E-01 1.0000000000 + 5 p + 145.11918809 .63963373134E-02 + 33.717894833 .44189359965E-01 + 10.369863083 .15581575993 + 3.5135616036 .28635286951 + 1.1980050273 .22921423248 + 1 p + .26583005913 1.0000000000 + 1 p + .71003361994E-01 1.0000000000 + 1 d + .30000000000 1.0000000000 +* +$rundimensions + dim(fock,dens)=6699 + natoms=6 + nshell=48 + nbf(CAO)=114 + nbf(AO)=108 + dim(trafo[SAO<-->AO/CAO])=936 + rhfshells=1 +$uhfmo_alpha scfconv=7 format(4d20.14) + 1 a1' eigenvalue=-.55432879104944D+02 nsaos=13 +-.99521447488544D+000.18696124149125D-010.92088860624442D-02-.41514074956354D-02 +0.47071371029935D-040.38977875224124D-04-.78452944343950D-03-.53082796950598D-03 +0.12814011606139D-020.74510672555959D-03-.14172379822964D-040.26187147600238D-03 +-.43546559136785D-03 + 2 a1' eigenvalue=-.39479121417164D+01 nsaos=13 +0.28598194232670D+000.10206585882792D+01-.54005596241082D-010.19931671677649D-01 +-.28457519820028D-02-.22223848360912D-020.19208200642297D-020.15405274506064D-02 +-.44342266759914D-02-.26798542745826D-020.12042334242651D-03-.87982103551587D-03 +0.15038911622834D-02 + 3 a1' eigenvalue=-.25545734054933D+01 nsaos=13 +-.74332183282494D-03-.22993082896575D-020.12180736070279D-01-.40431471732835D-02 +-.71541465367492D+00-.67496531074948D+00-.39879688438610D-01-.37053554160253D-01 +0.10158812634448D-010.81615119934338D-02-.42816205027487D-040.37024753030304D-03 +-.14487092411217D-02 + 4 a1' eigenvalue=-.25521983753836D+01 nsaos=13 +0.93982010146663D-040.35796597917751D-03-.12627169593434D-020.41731136120957D-03 +0.67531602830545D+00-.71589308234291D+000.34466782842190D-01-.36366109343180D-01 +-.64456612271266D-020.61446679818598D-02-.19349469524611D-02-.26609268721905D-03 +0.80313510744082D-03 + 5 a1' eigenvalue=-.44446000493563D+00 nsaos=13 +-.61289731238459D-01-.37389577197428D+00-.60876060606681D+00-.80593048018545D-01 +-.83627364138011D-01-.58306372859965D-010.12419952538776D+000.87322250367723D-01 +0.61454977592832D-010.47261588033855D-010.22360303231936D-03-.21823084195384D-01 +-.20392778603961D-01 + 6 a1' eigenvalue=-.20622230450663D+00 nsaos=13 +-.38501873151245D-02-.25358932923950D-01-.89113450357118D-010.38387744459064D-02 +-.12877505069423D+000.20265959137507D+000.24990350214597D+00-.36515861514716D+00 +0.18795306901057D+00-.36766015489568D+000.59007012382495D-010.39850444839742D-01 +-.36130761913947D-01 + 7 a1' eigenvalue=-.19120689627652D+00 nsaos=13 +-.20744970402787D-01-.13299842601769D+00-.27390178060701D+00-.31204338577280D+00 +0.18424809155826D+000.93072063345834D-01-.33455183285251D+00-.16536069510398D+00 +-.37495444015253D+00-.20827690096459D+00-.45873097892469D-020.92965079985029D-01 +0.52261817714763D-01 + 8 a1' eigenvalue=0.88932392562125D-01 nsaos=13 +-.49956613865066D-01-.35561952331443D+00-.21405486877020D+010.14381009233132D+01 +0.45718443835492D-010.49694478318576D-010.93764492633883D-02-.12909076174762D+00 +-.21940916786614D+000.85892822814887D-010.36299741250622D-010.17853138647471D+00 +-.27135347309416D+00 + 9 a1' eigenvalue=0.11642764842954D+00 nsaos=13 +-.15166628189098D-01-.10355261586422D+00-.40403369546551D+000.35438431390677D+00 +0.14623389879566D+00-.10080707899125D+00-.63245490133168D+000.45302941724461D+00 +0.57498274275619D+00-.43616253304925D+00-.41995605643176D+00-.19869859186036D-01 +0.18485515712718D+00 + 10 a1' eigenvalue=0.18244065037940D+00 nsaos=13 +0.45246844521731D-020.37111377003981D-010.44389497793684D+00-.11883467590975D+00 +-.15140558101250D-010.89749461424633D-02-.92955507639935D-01-.16558075934141D+00 +0.30198927277923D+000.30578443003635D+000.99088737433775D-010.74652698512012D+00 +0.40939838787029D+00 + 11 a1' eigenvalue=0.20315044663147D+00 nsaos=13 +-.20037990565832D-01-.13718570073764D+00-.45074227921796D+000.42058686893922D+00 +0.86386851367296D-010.15159507296191D+00-.35129984074759D+00-.57483571513488D+00 +0.24765502385424D+000.34070951428818D+000.25093943166909D+00-.36527660997220D+00 +0.53173875048598D+00 + 12 a1' eigenvalue=0.45252014969483D+00 nsaos=13 +-.81015477900488D-02-.64021714803163D-01-.60238436319627D+000.26342866411111D+00 +0.53587821878917D-01-.24494446514259D+00-.19070597014377D+000.11058711366415D+01 +0.75249895624689D-01-.75577292282374D+000.70971235249961D+00-.55841389020097D-01 +0.71881700640270D-01 + 13 a1' eigenvalue=0.51430757185690D+00 nsaos=13 +0.24698060870808D-010.19753039887362D+000.19915229212349D+01-.89055240209030D+00 +0.26285260979097D+000.96922353114709D-01-.13789524614052D+01-.54221601451516D+00 +0.11690838996012D+010.47584740183278D+000.22519990115968D+000.17768216418378D+00 +-.48581471260000D+00 + 1 a2' eigenvalue=-.25545373032414D+01 nsaos=5 +-.98390295717624D+00-.52761957998197D-010.12967146121216D-01-.55652449732983D-03 +0.24103373157530D-02 + 2 a2' eigenvalue=-.47830129008533D-01 nsaos=5 +0.20403120884537D+00-.37815381119970D+00-.12556558122136D+010.60441250691413D-01 +-.99211644188152D-01 + 3 a2' eigenvalue=0.30534834286430D+00 nsaos=5 +-.31937152782514D+000.12413046978739D+01-.17523642067768D+01-.32737620240910D+00 +0.56823520918354D-01 + 4 a2' eigenvalue=0.37929090203193D+00 nsaos=5 +-.13409233059108D+000.47673386511241D+00-.40609627047877D+000.92684742180848D+00 +0.89934411365252D-01 + 5 a2' eigenvalue=0.70652537692794D+00 nsaos=5 +-.81190032406466D-010.18660937016436D+000.82395201831965D+000.78368153994382D-01 +-.13511968928325D+01 + 1 e' eigenvalue=-.55432958033952D+02 nsaos=18 +0.99518336626868D+00-.18911704738081D-01-.90324816158819D-020.90945769922807D-02 +-.16913083479805D-03-.80336913915274D-040.19639588550001D-040.84407872751763D-03 +0.29509596906609D-030.17147718689373D-03-.28544201534045D-02-.12507515713780D-02 +-.78018465865004D-030.71019366205897D-030.13255049497573D-030.13356784033754D-03 +-.48663285888392D-03-.17957457249406D-03 + 2 e' eigenvalue=-.39479360962381D+01 nsaos=18 +0.28585251194714D+000.10196453635648D+01-.54320740572755D-010.38850114141726D-01 +-.34122355088210D-02-.32427098308542D-03-.20228744450891D-020.35027074133502D-02 +0.15679160534685D-02-.37826666729290D-04-.99600584438507D-02-.46078841151611D-02 +-.22655078754050D-020.26084128021217D-020.25467365574346D-030.33380867575527D-03 +-.20285234017131D-02-.86187085725552D-03 + 3 e' eigenvalue=-.25547555342280D+01 nsaos=18 +0.20063293109287D-030.85827233881903D-03-.18950164836156D-020.46265401467011D-02 +0.16326802728882D+00-.96164037657024D+000.13079467117916D+000.81536775511399D-02 +-.49930919414230D-010.73319276633672D-02-.59494422784637D-020.70498288220817D-02 +-.25624945104713D-02-.63192402597358D-030.49260457072010D-04-.70681981256646D-04 +-.49983439418490D-030.85048206815090D-03 + 4 e' eigenvalue=-.25542296360123D+01 nsaos=18 +-.74840301112747D-03-.21848679799410D-020.76129230779139D-02-.16482278917773D-01 +-.61845430247241D+00-.20533051763963D+00-.73707465779980D+00-.34366443579337D-01 +-.11138397876448D-01-.38494289066982D-010.14278920610585D-010.52361112385154D-02 +0.10335885077809D-01-.20660181916622D-02-.70579591909843D-03-.45196662300815D-03 +0.88073813485436D-030.53831991244250D-03 + 5 e' eigenvalue=-.25519092830474D+01 nsaos=18 +0.13054814329718D-03-.49074883330406D-04-.13470492330660D-020.37166967588649D-02 +0.74731675663859D+000.39848683965681D-01-.63865287211607D+000.40717969838228D-01 +0.32334756340499D-02-.33016656424956D-01-.71789728471662D-02-.60728338591626D-03 +0.81809567178543D-020.50342663436380D-030.31474860165513D-03-.46104841214904D-04 +-.19698712199729D-02-.12731064871533D-02 + 6 e' eigenvalue=-.32457291452723D+00 nsaos=18 +-.63226166151291D-01-.39525191731474D+00-.68932648941667D+00-.30703779844056D+00 +0.26585192294783D-010.71052843950465D-01-.71780716338552D-01-.43795722429614D-01 +-.11948894101500D+000.11492823750672D+000.43062810831000D-01-.59309796336434D-01 +0.98809623211075D-01-.28531805051756D-010.55239322014655D-020.19518224822635D-01 +0.36505814023321D-010.76516317102733D-02 + 7 e' eigenvalue=-.17788708853216D+00 nsaos=18 +0.15509109496891D-010.10020216934062D+000.25155642072060D+00-.31698862298994D-01 +-.10304705570460D+000.18891998642442D+000.41521883716666D-010.18285188696341D+00 +-.34576334224575D+00-.88010618258698D-010.33228289546330D+00-.40491102204161D+00 +-.48608904003551D-010.36638543333741D-01-.31804289698934D-010.45506068778368D-01 +0.38404814857389D-010.26545247266316D-01 + 8 e' eigenvalue=-.11102061765227D+00 nsaos=18 +0.11213325858239D-010.72624908178943D-010.15640679506229D+000.19546285570790D+00 +-.45797994558162D-01-.39363672487539D-02-.22898575275761D+000.79136284303092D-01 +0.72618281332979D-020.42744306209453D+000.27448213243322D+000.55504559275123D-01 +0.70882471706538D+00-.51290482045695D-010.18826139818305D-010.61792173190334D-01 +-.99630109899231D-030.21140845040172D-02 + 9 e' eigenvalue=-.28591597482926D-01 nsaos=18 +0.35269643042993D-010.23568157092908D+000.59244527370508D+000.12927508264321D+01 +0.13904341620232D+000.40893069175480D-01-.19634430232093D-01-.24615326069424D+00 +-.41239159606481D-010.14559307932679D-01-.14668829892619D+01-.69404644131362D+00 +0.22975270586652D+000.69800078146402D-010.50682476231935D-010.32204315501058D-01 +-.12119895341645D+00-.32386114601047D-01 + 10 e' eigenvalue=0.14153898309453D+00 nsaos=18 +-.39820347016057D-01-.28739336803390D+00-.22388664512677D+010.46866239345737D+01 +0.99452138183751D-01-.52612269476105D-01-.90902692355339D-02-.26888485896443D+00 +0.24702792610010D+000.18080148353255D+00-.16505188617694D+01-.11745101455069D+01 +-.40587538405647D+00-.19508897755951D+000.33650828619311D-01-.10541762838540D+00 +-.22924723086548D+00-.15895778358276D-01 + 11 e' eigenvalue=0.17710454405503D+00 nsaos=18 +-.26013700925710D-01-.18498910042365D+00-.11170612369099D+010.22814598224235D+01 +0.31657871612960D-010.11954979731799D+000.18043138597587D+00-.29980065488252D-01 +-.47409820640713D+00-.69926544654404D+00-.86168519887817D+000.41039081427439D-02 +0.80354785932302D+000.27701486451409D+000.15512256363465D-010.12571298560211D+00 +0.21932910167468D+00-.52351409044688D-01 + 12 e' eigenvalue=0.23421308460124D+00 nsaos=18 +0.27092709341917D-020.17728321407623D-01-.27027717968995D-010.35555271199396D+00 +-.35897864410674D-010.70479299453866D-01-.30045553082130D-010.12941513737814D+00 +-.22712915364784D+000.81148137585435D-01-.26296407007374D+00-.34862428384930D-01 +0.60026014936894D-010.71452380508087D-010.37999281052568D+00-.76960970121166D+00 +0.12349644744085D+000.94967970177951D-02 + 13 e' eigenvalue=0.26476095068466D+00 nsaos=18 +-.68251656228144D-04-.11785527037172D-01-.10011085093293D+010.29739526642034D+01 +-.71058815942976D-010.20587397575288D+00-.14367542216242D+000.40463129434448D+00 +-.80893573761268D+000.69931517279941D+00-.20947082465307D+01-.22064051450294D+00 +-.90297930920663D+00-.19995701320559D+00-.21560895148331D+000.83275834232566D-01 +0.13842587078186D+00-.29047932866196D+00 + 14 e' eigenvalue=0.31580347884572D+00 nsaos=18 +0.14704947544776D-010.10451835112243D+000.10581851817154D+01-.41292268728065D+01 +0.28611621590303D+000.17119420336423D+00-.46413679555624D-01-.11109734315423D+01 +-.61204846621503D+000.14168921708096D+000.28115384715508D+010.12588466788657D+01 +-.14739392659132D+000.61684157790781D-010.20885400735279D+000.74437678177437D-01 +-.21247288390562D+00-.38278085385406D-01 + 15 e' eigenvalue=0.39967862951946D+00 nsaos=18 +0.26467427484858D-020.23380543727793D-010.36017875242295D+00-.68302257715446D+00 +-.12321818125730D+000.66371652648574D-010.13376637198106D+000.42886591039633D+00 +-.27907523110627D+00-.54024220307003D+000.92303969410438D-010.32346394109907D+00 +0.37499861580810D+00-.51902960495695D+000.53595189323092D+000.20345496985530D+00 +-.33997768043265D+00-.10513764041826D+00 + 16 e' eigenvalue=0.46232253077143D+00 nsaos=18 +0.76080801698245D-020.50991202023584D-01-.10151322572761D+000.73906080744384D+00 +0.80375709852159D-01-.11568752818074D+00-.25555614667477D-01-.31509514941644D+00 +0.50599907321846D+000.19539945265803D+00-.17653169371305D+00-.57465770816991D+00 +-.42192178814273D+00-.13894634339790D+000.42935467840997D+000.21107455768383D+00 +0.63178540692415D+00-.53403150114928D+00 + 17 e' eigenvalue=0.55672088628219D+00 nsaos=18 +-.18750892546649D-01-.14368167337303D+00-.13761450561703D+010.27340144220718D+01 +-.10159911737451D+00-.58051074336404D-02-.14447033180982D+000.44943003999922D+00 +-.39578094677836D-010.81516748416047D+00-.16243200767368D+01-.47133301364318D+00 +-.12117370694143D+010.47446211422563D+000.58707548203163D+000.40814435520165D+00 +-.43022774734911D-010.42919735891407D+00 + 18 e' eigenvalue=0.68538937962449D+00 nsaos=18 +0.17720375932503D-010.11753664043705D+00-.70502050320552D+000.40575772466103D+01 +0.10669384718871D+000.58996147246632D-010.76086197316846D-02-.21569951736864D+00 +-.26865021080108D+000.77601589753298D-01-.25582103417758D+01-.83069010389259D+00 +-.26222724690530D+00-.65292859537337D+00-.16958404252712D-010.65011526062302D-01 +0.69922099547117D+000.93119078198522D+00 + 1 a1" eigenvalue=-.25545264294089D+01 nsaos=5 +0.98368513140369D+000.53775085242310D-01-.17008590670821D-01-.71634757143534D-03 +-.29086974591819D-02 + 2 a1" eigenvalue=0.24189125315672D-01 nsaos=5 +0.21434716035815D+00-.40425798613392D+00-.19496098279115D+01-.47920592692933D-01 +-.10920970718792D+00 + 3 a1" eigenvalue=0.34298477266631D+00 nsaos=5 +0.34287473259211D+00-.13435262602401D+010.27484890018722D+010.18602096606398D-01 +-.14097965170055D+00 + 4 a1" eigenvalue=0.58277039399736D+00 nsaos=5 +0.17607404356241D-01-.10576945279531D+000.42894775279714D+00-.11253381349841D+01 +0.31031282570998D+00 + 5 a1" eigenvalue=0.74968449139106D+00 nsaos=5 +-.10465389424361D+000.25835858345976D+000.12569810541506D+01-.34449369623343D+00 +-.13417600079773D+01 + 1 a2" eigenvalue=-.55432956463965D+02 nsaos=13 +-.99518400493104D+000.18924664656738D-010.10358589901187D-01-.10035458700783D-01 +0.85096676074236D-050.17770567959455D-03-.66011577382846D-03-.89386024374944D-03 +0.18938801341486D-020.38272606601825D-020.84176650357099D-03-.33243112787485D-03 +-.41236534173901D-03 + 2 a2" eigenvalue=-.39479267686131D+01 nsaos=13 +-.28587799340647D+00-.10198268829672D+010.56600580660237D-01-.38662155910458D-01 +0.26522963126892D-020.27578538633135D-02-.51238852468216D-03-.35627230070592D-02 +0.48046111482583D-020.11734568448694D-010.31783058295798D-02-.66274503153793D-03 +-.12110938474660D-02 + 3 a2" eigenvalue=-.25542670607186D+01 nsaos=13 +-.79317635305905D-03-.23910002166683D-020.11066626626048D-01-.18100831634774D-01 +-.78717704478959D+00-.59019549244925D+00-.42039842507376D-01-.32508251210833D-01 +0.12987353857786D-010.15782010809501D-010.21958609116730D-02-.12785608490187D-02 +-.13950946022601D-02 + 4 a2" eigenvalue=-.25518635945278D+01 nsaos=13 +-.40581939240407D-04-.66304277292588D-030.94058878694820D-030.95676543305956D-03 +-.59026267376853D+000.78714391739288D+00-.31194050859181D-010.42925624004397D-01 +0.87465656633798D-02-.55084169364262D-02-.21672980159418D-020.55905746470162D-03 +-.92343340119123D-03 + 5 a2" eigenvalue=-.35410991623464D+00 nsaos=13 +0.64016238875207D-010.39780668769531D+000.69791769083077D+000.19490472728345D+00 +0.10024234357066D+00-.46195995377158D-01-.16211702742114D+000.73607343103417D-01 +-.99621053761680D-010.41504158768335D-02-.45586602188739D-01-.14402640023989D-01 +0.26227711896287D-01 + 6 a2" eigenvalue=-.12596768300653D+00 nsaos=13 +-.12166005324565D-01-.77356082324191D-01-.81847810569955D-01-.45140407967202D+00 +0.23019187413229D+000.54510480720160D-01-.45496470113933D+00-.99890423372572D-01 +-.57146192116695D+00-.18981068537796D+00-.39828256642588D-01-.27759230462591D-01 +0.74090899151627D-01 + 7 a2" eigenvalue=-.44242310030159D-01 nsaos=13 +-.31089733975686D-01-.20716214537248D+00-.53163152951116D+00-.10276674949558D+01 +0.33197980528029D-01-.15253529619880D+00-.32181830951799D-010.26674508640356D+00 +-.28530101711325D+000.13645888627205D+010.12608856187494D+00-.80295721424745D-01 +-.66954580063133D-03 + 8 a2" eigenvalue=0.14143984701274D+00 nsaos=13 +0.43606803426291D-010.31927575845620D+000.27184446192225D+01-.47051173187009D+01 +-.70547459473839D-01-.68278871332761D-01-.33702089850768D-010.11693016410334D+00 +0.51551024618086D+000.21612289897504D+01-.18040252845938D-010.29153009913090D-01 +0.32651506608266D+00 + 9 a2" eigenvalue=0.17972395068028D+00 nsaos=13 +0.21861786765968D-010.14363449667780D+00-.29811831170558D-010.56379034656810D+00 +-.17861016087260D+00-.69066669939657D-010.89187588588640D+000.29131548643901D+00 +-.12201008736567D+01-.10247891085332D+010.11676644476197D+00-.15183845567872D+00 +-.48223600659132D+00 + 10 a2" eigenvalue=0.31010182037155D+00 nsaos=13 +-.14679383515200D-01-.10325532317811D+00-.81166581562748D+000.27545541534729D+01 +0.52517969476452D-01-.31052509133316D+00-.20187384136723D+000.11924463063971D+01 +0.27269529863089D+00-.22777676591359D+010.11190410624384D+00-.34786562195713D+00 +0.20419759201914D+00 + 11 a2" eigenvalue=0.37335807395164D+00 nsaos=13 +-.68847569280820D-02-.58637488024100D-01-.83934497725959D+000.11895225386588D+01 +-.14698093300625D+000.14262999019817D+000.65884248511907D+00-.45537550938975D+00 +-.55951180051284D+00-.44662036477354D+00-.86257534600774D-01-.65524304244183D+00 +0.47421741487701D+00 + 12 a2" eigenvalue=0.58221170817220D+00 nsaos=13 +-.17681169331600D-01-.15148333377165D+00-.25861457452775D+010.47518844395153D+01 +-.17312891195305D+00-.55888994047126D-010.11972843787958D+010.32091665259227D+00 +-.18869310279915D+01-.29167680585250D+010.34731151393154D+000.71167203340466D+00 +0.50912834871639D+00 + 13 a2" eigenvalue=0.68526675525132D+00 nsaos=13 +0.25060172414004D-010.17782119137092D+000.18265885979397D+000.15643986288156D+01 +0.66392847563286D-010.13683123871232D+00-.26431122879872D+00-.41620463883469D+00 +0.22510166133159D+00-.12271410168577D+010.12760405669276D+01-.18580354314108D+00 +0.42485707668562D-01 + 1 e" eigenvalue=-.55433041034310D+02 nsaos=18 +0.99515069550426D+00-.19149787560447D-01-.85680494901144D-020.69764036968508D-02 +-.15902043045463D-03-.95534072566905D-04-.17014264990763D-030.67748385960284D-03 +0.39802887661175D-030.73300867272471D-03-.28120637897278D-03-.31478005022451D-03 +-.31991504462105D-03-.36629420671283D-03-.17753391636297D-03-.11888289851997D-03 +-.68623092890067D-03-.38564125162451D-03 + 2 e" eigenvalue=-.39479663493394D+01 nsaos=18 +-.28572077325161D+00-.10185821700543D+010.53698301423800D-01-.26901291524299D-01 +0.33836852122832D-020.38651992971376D-030.27496037864371D-02-.29182355670193D-02 +-.20879635015442D-02-.32328278491723D-02-.16856165690203D-020.43736610554674D-03 +-.80002453766193D-030.12046202862120D-020.79235646703702D-030.37936556648194D-03 +0.27802022452121D-020.16369239093694D-02 + 3 e" eigenvalue=-.25547177726808D+01 nsaos=18 +-.15937514251548D-03-.75672616124871D-030.42247090017825D-03-.55455109960565D-02 +-.12572163390272D+000.97327474181493D+00-.73002190165525D-01-.57037447377802D-02 +0.50988302884054D-01-.42317961853681D-020.42590281113693D-02-.10761258542921D-01 +0.47072204638184D-020.94965362666001D-03-.26514304015333D-03-.62337769503370D-04 +0.59616738009003D-03-.53085461944699D-03 + 4 e" eigenvalue=-.25539563552128D+01 nsaos=18 +0.72863549153752D-030.16039564987461D-02-.87616990785700D-020.39248598660830D-01 +0.70879357923517D+000.14147553572490D+000.66681176490526D+000.40165061026415D-01 +0.85231826745310D-020.37807539339219D-01-.18937110786740D-01-.58904733991405D-02 +-.17885840969982D-01-.85750290358892D-03-.86959718965558D-03-.61598189654025D-03 +-.14472968024061D-02-.93717220700586D-03 + 5 e" eigenvalue=-.25516460768503D+01 nsaos=18 +-.90090226769942D-04-.37244801262841D-03-.43718697453767D-030.24466554624878D-02 +-.67002886070311D+00-.32363158592606D-010.71921580790702D+00-.37326238277883D-01 +-.28660095729971D-020.40454005138464D-010.10549803007109D-010.16020370328901D-02 +-.12684279947146D-01-.41652339817541D-020.12727669536653D-03-.22227557597484D-03 +0.17764714836519D-020.11969481353933D-02 + 6 e" eigenvalue=-.22717567399551D+00 nsaos=18 +0.64029896833988D-010.40840775785612D+000.75801760717461D+000.62914817754748D+00 +-.28009951808374D-01-.91759533899488D-01-.57539908551282D-010.45589408498816D-01 +0.16295650246251D+000.97100025188543D-01-.29587494848568D-010.14577150322424D+00 +0.33345435010861D-01-.21303353335337D-010.10267069150335D-010.18817408143947D-01 +-.47651582645918D-01-.11424501083351D-01 + 7 e" eigenvalue=-.10307020686025D+00 nsaos=18 +0.18850116675151D-010.12291161155543D+000.29496803945718D+00-.14794266377598D+00 +-.11806533987589D+000.19228745701177D+00-.29121136375528D-010.21702340856405D+00 +-.36212885600184D+000.50471080480577D-010.56486173403930D+00-.59381997816750D+00 +0.23176938592153D+000.13768369283629D-010.24103959552535D-01-.35405683093064D-01 +0.44075166905600D-010.29506821187524D-01 + 8 e" eigenvalue=0.43716150058531D-01 nsaos=18 +0.44725304549828D-020.30388254944457D-010.84709102764700D-010.20414671461772D+00 +0.13233008894744D+000.49333912588768D-01-.14068445611775D+00-.24733459360625D+00 +-.80814175071688D-010.26033366616576D+00-.16040326985940D+01-.69322942798140D+00 +0.16076427273924D+010.10883604883127D+00-.71470251274544D-020.25871457543892D-01 +-.75884792185823D-01-.26233084099721D-01 + 9 e" eigenvalue=0.58196333863044D-01 nsaos=18 +-.53711931608768D-01-.36755109514611D+00-.11683403219152D+01-.21410031314268D+01 +-.75059029563510D-010.10897883505472D-02-.83612810367317D-010.14813269620361D+00 +-.86408645550451D-010.12795802914807D+000.12671073314949D+010.82441108329495D+00 +0.16837039210725D+010.76881319094165D-010.34547943638550D-010.52200845707388D-01 +0.16632380842258D+000.36660065640689D-01 + 10 e" eigenvalue=0.17370549224303D+00 nsaos=18 +-.33559721056863D-01-.24344056675298D+00-.26318418123924D+010.14001397134413D+02 +0.10247462829267D+00-.30280299520856D-010.73143951133129D-01-.24264548653343D+00 +0.14046067797818D+00-.14789437351692D+00-.36187817968585D+01-.21011014620461D+01 +-.37032803069190D+01-.43217871504191D-010.86642464242844D-02-.17017761222231D-01 +-.13780818170632D+00-.14584173644559D-01 + 11 e" eigenvalue=0.25776198847663D+00 nsaos=18 +-.10279707842740D-01-.63907151957944D-010.96186296254414D+00-.91703632440769D+01 +0.64261911812044D-01-.25946517288663D+00-.48274428767223D-01-.41500203593688D+00 +0.10409616777129D+010.80593932382556D-010.37649099133605D+010.35941087962576D+00 +0.27805106018632D+01-.19566091250296D-010.84588961722686D-01-.97909733605223D-01 +-.26256737606457D+000.15844622346419D+00 + 12 e" eigenvalue=0.35850316748835D+00 nsaos=18 +-.71506792096128D-03-.50278151887305D-02-.21683954585007D+000.18832560905476D+01 +-.22475985654277D+00-.12363295373385D+000.22948992603348D+000.88358102433306D+00 +0.46501051637552D+00-.88712809500952D+00-.26082431415622D+01-.11280256875596D+01 +0.16798688003597D+01-.20313051229604D+000.13476426979637D-01-.11957052821081D-01 +0.13135955966421D+000.61374250743265D-01 + 13 e" eigenvalue=0.38611197363586D+00 nsaos=18 +0.15002542406920D-010.10459837920715D+000.15811136726993D+01-.13269809477496D+02 +0.19039642788173D+000.13541912173441D+000.26257923326382D+00-.78191241295814D+00 +-.47787372615765D+00-.10363930719377D+010.45154200697456D+010.21127540343398D+01 +0.48573334007777D+01-.12379023228481D+000.41675689626227D-02-.84423328317285D-01 +-.27790584147454D+000.17507237168113D-01 + 14 e" eigenvalue=0.43938904491606D+00 nsaos=18 +0.97355894348761D-020.67009361856345D-010.14441110840002D-010.12327126010527D+01 +0.81396405595961D-01-.44837701345232D-010.27228982812993D-01-.26484721197268D+00 +0.15502613749719D+00-.10138691417503D+00-.38622251381033D+00-.21774311911496D+00 +-.24443607474683D+000.11408721834502D+000.27457757034007D+00-.73987926181476D+00 +0.49329182702050D+00-.38642357815737D+00 + 15 e" eigenvalue=0.50587301198343D+00 nsaos=18 +0.20734792579009D-010.14523169143614D+000.26477255835244D+000.12688655680733D+01 +0.15487363837202D+00-.73749810333888D-010.81156774786999D-01-.59592648106454D+00 +0.37846149450888D+00-.27458710156601D+000.10153664381453D+00-.76563034413045D+00 +-.35277061988371D+000.16465458643116D+00-.45161136332143D+000.49578615578936D+00 +0.66741681846924D+000.59723077706683D-02 + 16 e" eigenvalue=0.58252838617516D+00 nsaos=18 +0.69012015083197D-020.45053246240281D-01-.62537250016594D+000.59725658635424D+01 +-.67900926975386D-020.27357809156169D-010.11825005016660D-010.12493717580505D+00 +-.20890899695051D+00-.13866200962415D-01-.22121238219715D+01-.41050826609119D+00 +-.17807970448230D+010.34192680223021D+00-.47848403969571D+00-.54573104836929D+00 +0.11366122725321D+000.85147977466517D+00 + 17 e" eigenvalue=0.69835851966127D+00 nsaos=18 +0.16387542786020D-010.11251163857904D+00-.88059086434553D+000.11132898558707D+02 +0.56812853283230D-010.27789313730096D-010.49944299324933D-01-.35528008042193D-01 +-.16524359880086D+00-.61253961791340D-01-.39931937378087D+01-.13916907675655D+01 +-.37527707214947D+010.30206191604916D+000.98909426805910D+000.31867848841340D+00 +0.36642433928325D+000.65643865529923D+00 + 18 e" eigenvalue=0.81786052934744D+00 nsaos=18 +-.12555080657871D-02-.10965093098730D-01-.19796580870795D+000.11910562977890D+01 +0.99685652986623D-010.42334606672780D-01-.13057103438588D+00-.28112950938852D+00 +-.16533698092539D+000.42695200249001D+00-.13247195265649D+01-.39139927675503D+00 +0.64882619382885D+00-.13455102585453D+010.15630242401017D-01-.10275741849085D+00 +0.44586776702222D+000.42236895005163D+00 +$uhfmo_beta scfconv=7 format(4d20.14) + 1 a1' eigenvalue=-.55432223923433D+02 nsaos=13 +0.99521592104796D+00-.18690382112264D-01-.92037792733589D-020.41490504311908D-02 +-.48078687500803D-04-.37934217956010D-040.78437990442316D-030.52982995211850D-03 +-.12808379988817D-02-.74439092751619D-030.13798244287691D-04-.26182873444231D-03 +0.43498198039959D-03 + 2 a1' eigenvalue=-.39470908476506D+01 nsaos=13 +0.28599010506777D+000.10207403319908D+01-.53738734649695D-010.19840805108047D-01 +-.26760809842307D-02-.23735111910793D-020.19560849738028D-020.13996334866888D-02 +-.44342808520923D-02-.26355255971118D-02-.11200006829173D-04-.92198130859436D-03 +0.13696884691804D-02 + 3 a1' eigenvalue=-.25541420511885D+01 nsaos=13 +0.75141169545466D-030.23592760673088D-02-.11843894478810D-010.39252730165569D-02 +0.66622372890135D+000.72359093568718D+000.37268929026216D-010.39561574925152D-01 +-.96590392008194D-02-.86009842651154D-020.22788972428160D-03-.33530071683519D-03 +0.12678467028901D-02 + 4 a1' eigenvalue=-.25513862935986D+01 nsaos=13 +-.57423804237756D-04-.15904870734113D-030.22810805086795D-02-.73202418974859D-03 +-.72399402896312D+000.66672743638937D+00-.36940369368738D-010.33622794926817D-01 +0.70994186515839D-02-.56024459206174D-020.19963963605130D-020.13245622245999D-03 +-.80132816943548D-03 + 5 a1' eigenvalue=-.43327619474264D+00 nsaos=13 +-.61358179235573D-01-.37470427858749D+00-.62338801521170D+00-.69375524104804D-01 +-.87513120780112D-01-.55925153668906D-010.13449668287830D+000.86019543946353D-01 +0.62393889677714D-010.37724782025487D-01-.71647719479443D-02-.25972145675578D-01 +-.34454886427098D-01 + 6 a1' eigenvalue=-.19938117286331D+00 nsaos=13 +0.77038165214151D-020.49964628501169D-010.12848332278198D+000.80668308191695D-01 +0.77185918274495D-01-.22115845971485D+00-.15296483159222D+000.40212844295413D+00 +-.93630767707132D-010.40280884256072D+00-.50948473503107D-01-.69033480190362D-01 +0.24225018878668D-01 + 7 a1' eigenvalue=-.18310096615336D+00 nsaos=13 +-.20212034155966D-01-.12945433292932D+00-.26421908060657D+00-.29720048103448D+00 +0.20990061534514D+000.39254481710099D-01-.38548466845947D+00-.66539439041493D-01 +-.40985718477902D+00-.11474938335737D+00-.25006148917493D-010.69629088303543D-01 +0.60788402412606D-01 + 8 a1' eigenvalue=0.99724392329626D-01 nsaos=13 +0.47259837874628D-010.33686772609591D+000.20389102671939D+01-.13747371157931D+01 +-.28819760606842D-01-.74192254672110D-01-.75900928067921D-010.23872381912425D+00 +0.27521339523467D+00-.18275056393128D+00-.10447630089092D+00-.19116011277886D+00 +0.26192179694248D+00 + 9 a1' eigenvalue=0.12440826610962D+00 nsaos=13 +0.22086498434072D-010.15301283493638D+000.70194460316405D+00-.56625653018996D+00 +-.15222325281050D+000.86127055168278D-010.63252743493601D+00-.40212898974873D+00 +-.54931070860853D+000.39890060611956D+000.41030865590928D+000.65270651925012D-03 +-.15630502906860D+00 + 10 a1' eigenvalue=0.18914341056088D+00 nsaos=13 +0.86979163133037D-020.66309825796684D-010.56201276235655D+00-.23482295333187D+00 +-.30676966125502D-01-.25076925730457D-01-.27567302294507D-01-.37278794599558D-01 +0.24957804694905D+000.22743741571888D+000.44163530642940D-010.79930454220803D+00 +0.30451534322072D+00 + 11 a1' eigenvalue=0.21797637037723D+00 nsaos=13 +0.16305339607693D-010.10887877726211D+000.21859556308055D+00-.29583818051080D+00 +-.75307437280154D-01-.15515568391760D+000.35281739796538D+000.62364294714251D+00 +-.31102975863445D+00-.41535929771293D+00-.25828002427354D+000.21703355942427D+00 +-.60615404869156D+00 + 12 a1' eigenvalue=0.45927612669177D+00 nsaos=13 +0.79688875035138D-020.61360778289613D-010.51717776813292D+00-.23309167132377D+00 +-.72723108996128D-010.23449526625405D+000.28723479270059D+00-.10580197691463D+01 +-.15523642081826D+000.72226965210829D+00-.72455578629675D+000.47945437410129D-01 +-.52574640865228D-01 + 13 a1' eigenvalue=0.52485363788752D+00 nsaos=13 +-.25658137430481D-01-.20468944033772D+00-.20425697328318D+010.91864583431261D+00 +-.25869864270752D+00-.10953010823573D+000.13624107712138D+010.60254108585112D+00 +-.11585060970314D+01-.51992543444494D+00-.17943869262987D+00-.18240820511559D+00 +0.49231467178769D+00 + 1 a2' eigenvalue=-.25526236251170D+01 nsaos=5 +-.98413526444096D+00-.52052619322559D-010.12868193303344D-01-.73097659892041D-03 +0.23088396859752D-02 + 2 a2' eigenvalue=-.29037671133974D-01 nsaos=5 +0.20106962631426D+00-.36807621642386D+00-.12709367029989D+010.47887655857233D-01 +-.10103604718164D+00 + 3 a2' eigenvalue=0.32191011475397D+00 nsaos=5 +0.32342776910832D+00-.12538743461938D+010.17506461941994D+010.30958475235811D+00 +-.67667199867436D-01 + 4 a2' eigenvalue=0.39151585840543D+00 nsaos=5 +-.12550402075809D+000.44750391400569D+00-.38414241181563D+000.93370076341691D+00 +0.89949492246146D-01 + 5 a2' eigenvalue=0.72288355805818D+00 nsaos=5 +-.83405732384899D-010.19511409972125D+000.81465201464023D+000.77991966725727D-01 +-.13505611942751D+01 + 1 e' eigenvalue=-.55432302817304D+02 nsaos=18 +0.99518481776255D+00-.18905931015698D-01-.90276866245281D-020.90894595716199D-02 +-.17013164775879D-03-.80310458685403D-040.20639876951423D-040.84408957807842D-03 +0.29502931727723D-030.17073348771604D-03-.28527243625946D-02-.12500930606119D-02 +-.77935025434692D-030.70956877044181D-030.13236509561332D-030.13348072201064D-03 +-.48645065288834D-03-.17995755911408D-03 + 2 e' eigenvalue=-.39471162993016D+01 nsaos=18 +0.28586011504606D+000.10197244878168D+01-.54042155498413D-010.38620649082807D-01 +-.32429057801160D-02-.32476718019626D-03-.21750967541503D-020.35371384295134D-02 +0.15720791815148D-02-.17552197826316D-03-.98728134733278D-02-.45829479635706D-02 +-.21892346164504D-020.24761791576793D-020.19583795038315D-030.32441522250690D-03 +-.20315256427762D-02-.10177672611348D-02 + 3 e' eigenvalue=-.25538659207213D+01 nsaos=18 +0.78655108521348D-030.24369427477523D-02-.75820268596467D-020.16708835272676D-01 +0.59988337233544D+00-.91778294801065D-010.77439097585792D+000.33087222694949D-01 +-.42815325529410D-020.40622235247600D-01-.14933157163189D-01-.28507944197296D-02 +-.11076769145408D-010.18451455795576D-020.66825411307275D-030.39172603820097D-03 +-.92867612823545D-03-.32315948374295D-03 + 4 e' eigenvalue=-.25528070462854D+01 nsaos=18 +-.33565573716380D-040.13420251136373D-030.40755309122728D-03-.50195480165434D-03 +-.32639195726040D-02-.97783339360374D+00-.11318662639688D+00-.10747664111008D-02 +-.50175532895060D-01-.54426611455970D-02-.15652957082238D-020.82348437648718D-02 +0.91942754646406D-03-.11903285761214D-02-.15009257546432D-03-.37015950621954D-03 +-.35080416323629D-030.89684379849249D-03 + 5 e' eigenvalue=-.25510667660475D+01 nsaos=18 +-.80355840746617D-040.30948114484634D-030.19870979490141D-02-.45056816695266D-02 +-.77965675576485D+00-.66206722504925D-010.59648536496463D+00-.42329323836034D-01 +-.46061034892341D-020.30750995102679D-010.77788071509546D-020.97820770803092D-03 +-.76131421805936D-02-.59549819860316D-03-.53771426615990D-03-.25658320359394D-05 +0.20429854629518D-020.14205630258140D-02 + 6 e' eigenvalue=-.30905763969827D+00 nsaos=18 +0.64438533571602D-010.40355786348198D+000.72819149499728D+000.26433330051898D+00 +-.27009936801225D-01-.65922484356677D-010.69355552509737D-010.40969991561521D-01 +0.11153197853112D+00-.11529272093670D+00-.14675902220001D-010.55139264557287D-01 +-.74989710413505D-010.38695926937886D-01-.84973184446690D-03-.16755024749395D-01 +-.34922522690352D-010.10823580617952D-02 + 7 e' eigenvalue=-.15656982935933D+00 nsaos=18 +0.13181452072314D-010.85232800787775D-010.21440570568768D+00-.33742188158310D-01 +-.10638467070708D+000.18944882768438D+000.36607926257813D-010.19198717669181D+00 +-.34733960764326D+00-.77412515799586D-010.34784210021918D+00-.40113840294214D+00 +-.44678101326894D-010.34445464326185D-01-.27013073394516D-010.37453984789864D-01 +0.37282136414600D-010.26316556524544D-01 + 8 e' eigenvalue=-.10713044165988D+00 nsaos=18 +-.98674730914450D-02-.63890456327810D-01-.12534656845623D+00-.24564257227721D+00 +0.44453758072463D-010.44870524614605D-020.23215791106492D+00-.80116383296144D-01 +-.80837654693062D-02-.43729107051825D+00-.23633750898314D+00-.45844318102673D-01 +-.70587440285940D+000.45773792268374D-01-.17765992360644D-01-.56934785913277D-01 +-.65613838123194D-03-.31838458076146D-02 + 9 e' eigenvalue=-.17070638489574D-01 nsaos=18 +0.34732302100376D-010.23235685729985D+000.58391457913035D+000.12993429944830D+01 +0.13828519357332D+000.46831387964476D-01-.20384813685486D-01-.24425231159352D+00 +-.57057897862984D-010.19450332498780D-01-.14753409428338D+01-.69789238378391D+00 +0.22203565909656D+000.80511841547768D-010.47614251775472D-010.27687209911712D-01 +-.11126728888343D+00-.22862282698421D-01 + 10 e' eigenvalue=0.15367395600018D+00 nsaos=18 +0.41460041871948D-010.29923731318849D+000.23062607338094D+01-.48492422151626D+01 +-.10634460035600D+000.45059656865140D-01-.16480392902785D-010.28583522289720D+00 +-.21481787883787D+00-.77052737165379D-010.17009401144537D+010.11654825765087D+01 +0.28246257905133D+000.16589242911287D+00-.29968280065446D-010.93356955547826D-01 +0.20559589962005D+000.16184761292614D-01 + 11 e' eigenvalue=0.18500791325888D+00 nsaos=18 +0.22068411227924D-010.15547734687117D+000.82352110421302D+00-.16244525457615D+01 +-.17468278532299D-01-.11372626444013D+00-.18915752692600D+00-.18188898655482D-02 +0.45503993040163D+000.75718335554062D+000.58893378090563D+00-.13608498085815D+00 +-.89572574589739D+00-.30125951691388D+00-.22176732189117D-01-.12201720251907D+00 +-.23814822199508D+000.43511856172409D-01 + 12 e' eigenvalue=0.24649844338035D+00 nsaos=18 +0.20866866473623D-020.14065061060841D-010.62756998104116D-020.19414350884347D+00 +-.33177126251076D-010.61757522687410D-01-.25493388358388D-010.11338728162383D+00 +-.19717096150571D+000.62060817871100D-01-.15546601784911D+00-.77749179137253D-02 +0.72457885613136D-010.71462352020999D-010.40260013371701D+00-.76804032709923D+00 +0.10404593180426D+000.17392320723946D-01 + 13 e' eigenvalue=0.28109919461625D+00 nsaos=18 +0.24991155816542D-020.29657457968388D-010.11552693793146D+01-.34210623833292D+01 +0.86582069912551D-01-.19871616317355D+000.13437523823822D+00-.46966314917746D+00 +0.78567879671352D+00-.66777149437412D+000.23350727660543D+010.31956805681257D+00 +0.86021184132810D+000.16987494636880D+000.23868377095314D+00-.41845227290801D-01 +-.16086987709043D+000.28298571791464D+00 + 14 e' eigenvalue=0.32579141733626D+00 nsaos=18 +0.13821383829590D-010.97483773878482D-010.94960745969321D+00-.38467761171411D+01 +0.28532797737857D+000.18475920874407D+00-.57480647481902D-01-.10967721349163D+01 +-.66502220688591D+000.19315245887612D+000.26449402946380D+010.12286207709379D+01 +-.20074441222667D+000.68663341981588D-010.16967425027810D+000.78556874884091D-01 +-.18784470346537D+00-.51259327382547D-01 + 15 e' eigenvalue=0.40778951620886D+00 nsaos=18 +0.37801844959021D-020.30530055507420D-010.34931808475158D+00-.63457223313724D+00 +-.11373048760049D+000.77143683803316D-010.12363941937817D+000.40188753441514D+00 +-.32115244652758D+00-.49550346349726D+000.59493213584403D-010.33346388253498D+00 +0.32378754179147D+00-.52624998952229D+000.53728332856736D+000.22647019754572D+00 +-.33866021759135D+00-.10640302179252D+00 + 16 e' eigenvalue=0.47793423316358D+00 nsaos=18 +-.66578918856513D-02-.43359576286260D-010.19388848613060D+00-.93780419989364D+00 +-.74834859020487D-010.11225358517063D+000.37038541148445D-010.28847684313065D+00 +-.49033214295437D+00-.25595648845028D+000.29547160348537D+000.60542858997922D+00 +0.50447379662079D+000.11032761947427D+00-.45667847585480D+00-.23409813504038D+00 +-.62911914706262D+000.51518380496196D+00 + 17 e' eigenvalue=0.56742678781617D+00 nsaos=18 +0.20824310747374D-010.15784415977977D+000.13908586117555D+01-.26326387055104D+01 +0.10613801846898D+000.14808964810289D-020.14246299246751D+00-.46360095141003D+00 +0.58775315668953D-01-.80156912136897D+000.15544712876575D+010.42430713506134D+00 +0.11845106077759D+01-.50392368205215D+00-.55368769319478D+00-.39661818919345D+00 +0.95749588118402D-01-.43294332649250D+00 + 18 e' eigenvalue=0.69328904533589D+00 nsaos=18 +0.16951295355690D-010.11181874496955D+00-.75324865704989D+000.41498687040359D+01 +0.10256106022931D+000.59823899226977D-010.24181266148052D-02-.19888555351753D+00 +-.27316067645198D+000.10498262627057D+00-.26109212847664D+01-.84495510404935D+00 +-.29829748310817D+00-.63419983960999D+00-.51926676216907D-020.72478388432655D-01 +0.70540690790578D+000.94220196986239D+00 + 1 a1" eigenvalue=-.25526109115876D+01 nsaos=5 +-.98392677750887D+00-.53034545741399D-010.16979361822035D-010.46332007731846D-03 +0.27839268065301D-02 + 2 a1" eigenvalue=0.38739606701353D-01 nsaos=5 +-.20882451460977D+000.38493554364402D+000.19816093007875D+010.58708061728474D-01 +0.10857640960206D+00 + 3 a1" eigenvalue=0.35668383602106D+00 nsaos=5 +-.34461743788420D+000.13479025574579D+01-.27398284040874D+010.34453874636433D-02 +0.15165580915741D+00 + 4 a1" eigenvalue=0.59756146319295D+00 nsaos=5 +0.10453754526695D-01-.80946244869055D-010.40394560757235D+00-.11253706520271D+01 +0.31210411490081D+00 + 5 a1" eigenvalue=0.76631191918348D+00 nsaos=5 +-.10870438141288D+000.27374037175786D+000.12339212512819D+01-.34320100937239D+00 +-.13402311001115D+01 + 1 a2" eigenvalue=-.55432301220458D+02 nsaos=13 +0.99518546154271D+00-.18918851704091D-01-.10353266175125D-010.10029819588149D-01 +-.95581363130625D-05-.17658608619714D-030.66015004951006D-030.89273704581811D-03 +-.18931188318067D-02-.38248162727509D-02-.84174213348420D-030.33212388538963D-03 +0.41189846898283D-03 + 2 a2" eigenvalue=-.39471061223966D+01 nsaos=13 +0.28588572202732D+000.10199059735762D+01-.56274585943105D-010.38247984412924D-01 +-.24812022694278D-02-.29116058373772D-020.52839515102739D-030.34330670368805D-02 +-.47569823956347D-02-.11490046693366D-01-.33388959264765D-020.60623499202726D-03 +0.10678873855723D-02 + 3 a2" eigenvalue=-.25537925863304D+01 nsaos=13 +0.79507876543762D-030.23856020358230D-02-.10741926980033D-010.18038448585591D-01 +0.73449402801051D+000.65462517866750D+000.39144350934708D-010.36033049240112D-01 +-.12200320378987D-01-.16214044013909D-01-.23013855961504D-020.13801313263823D-02 +0.11841658187845D-02 + 4 a2" eigenvalue=-.25510944884488D+01 nsaos=13 +-.14514211107948D-04-.46846468456373D-030.21861175849634D-02-.53927392590370D-03 +-.65477042563132D+000.73447701663023D+00-.34429775163764D-010.39862594973057D-01 +0.98167961892024D-02-.42683137495422D-02-.18069649529015D-020.27747026760050D-03 +-.94290104063346D-03 + 5 a2" eigenvalue=-.34540356025438D+00 nsaos=13 +-.63643083761799D-01-.39574695195342D+00-.71113900070131D+00-.13880481500875D+00 +-.10212397251611D+000.50050875859215D-010.16996904863850D+00-.80707047680923D-01 +0.94566013676593D-01-.44778560059105D-010.36977491272989D-010.15599170813077D-01 +-.40884686465336D-01 + 6 a2" eigenvalue=-.12062832429443D+00 nsaos=13 +0.11553683626058D-010.73601394067849D-010.96623118774862D-010.35167628922659D+00 +-.22681306873046D+00-.61722371784066D-010.44322765188677D+000.11215583269780D+00 +0.57260050773529D+000.27467810549982D+000.45633213577857D-010.32471512183493D-01 +-.75051808550204D-01 + 7 a2" eigenvalue=-.37243728178299D-01 nsaos=13 +0.32965507324251D-010.21942942696060D+000.58169850767959D+000.98889447992061D+00 +-.38177392297856D-010.14689989120642D+000.32101845094046D-01-.25502249005611D+00 +0.33195729169911D+00-.13224225550512D+01-.12669500456506D+000.86095918358620D-01 +0.14003268677083D-01 + 8 a2" eigenvalue=0.15499187203153D+00 nsaos=13 +0.44815072739469D-010.32698874665044D+000.26509081651602D+01-.45365240013199D+01 +-.92771460612464D-01-.85180795998833D-010.90374610467047D-010.18448565055183D+00 +0.32134245748563D+000.19578782389681D+010.92704674589965D-020.20003708917608D-01 +0.25011037119668D+00 + 9 a2" eigenvalue=0.18876576127776D+00 nsaos=13 +-.16215039102787D-01-.10112542355408D+000.45345001371417D+00-.13963874239598D+01 +0.16751125340703D+000.63203523934953D-01-.89423509163427D+00-.29582604258419D+00 +0.12823762841611D+010.14469580330311D+01-.12620751248958D+000.16591530383480D+00 +0.51068186265656D+00 + 10 a2" eigenvalue=0.31531790238152D+00 nsaos=13 +-.15727331289404D-01-.10977610220051D+00-.79676641585848D+000.27014948661819D+01 +0.61833115680868D-01-.31003169555844D+00-.24963478912434D+000.11870278216435D+01 +0.33294575408138D+00-.22199659718133D+010.11050718467731D+00-.34063326648206D+00 +0.20247456743156D+00 + 11 a2" eigenvalue=0.38347625736758D+00 nsaos=13 +0.66197723789304D-020.56067269142339D-010.77021266686154D+00-.10599221802475D+01 +0.14762560231609D+00-.13481595097501D+00-.64342097987143D+000.43213884294097D+00 +0.51068792727700D+000.37915371298066D+000.10899738574283D+000.66353123410255D+00 +-.48034557110843D+00 + 12 a2" eigenvalue=0.58989668988535D+00 nsaos=13 +0.19158547391014D-010.16189840717418D+000.26311299881343D+01-.47917382389538D+01 +0.17376803864995D+000.59065980536533D-01-.12009780072253D+01-.33259538852120D+00 +0.18890173837581D+010.29267528295159D+01-.32502555417600D+00-.70467233056284D+00 +-.51641716506657D+00 + 13 a2" eigenvalue=0.69176799369917D+00 nsaos=13 +0.24252023663031D-010.17172474176694D+000.12180942863085D+000.16586411866155D+01 +0.61675827642763D-010.13937872385972D+00-.23714427936145D+00-.42253100096866D+00 +0.18995112616286D+00-.12764183747604D+010.12795079990491D+01-.18214870320287D+00 +0.60594745160637D-01 + 1 e" eigenvalue=-.55432385747777D+02 nsaos=18 +-.99515215920588D+000.19143935393474D-010.85638960319681D-02-.69722985278154D-02 +0.16004079079728D-030.95490160847516D-040.16903306970378D-03-.67765056739755D-03 +-.39785166050207D-03-.73199833410074D-030.28100653445502D-030.31464211069513D-03 +0.31907977726421D-030.36638903385694D-030.17762470333475D-030.11881989704735D-03 +0.68594608501594D-030.38591746203558D-03 + 2 e" eigenvalue=-.39471477021533D+01 nsaos=18 +0.28572739441698D+000.10186539375308D+01-.53412337329813D-010.25982748811566D-01 +-.32149229103827D-02-.38703408317653D-03-.29045764744652D-020.29526649966862D-02 +0.20933715468976D-020.31094813226767D-020.19176573225155D-02-.36074454742369D-03 +0.11630302047265D-02-.13622871841561D-02-.86251054320964D-03-.38382931257876D-03 +-.27865602666262D-02-.18005916169566D-02 + 3 e" eigenvalue=-.25535544007225D+01 nsaos=18 +-.74870432849921D-03-.17843994163286D-020.83649037401361D-02-.38952131042822D-01 +-.66876485450284D+000.12473464861746D+00-.71021953244104D+00-.37517059052538D-01 +0.54322069606609D-02-.40272246694325D-010.18438397568668D-010.26362988355612D-02 +0.19308543573601D-010.12369522578136D-020.72215280847764D-030.62768823966994D-03 +0.14795834860160D-020.81206568627270D-03 + 4 e" eigenvalue=-.25527714673969D+01 nsaos=18 +0.43376323596810D-04-.27783353406321D-03-.18174365367998D-020.49037534608302D-02 +0.45507710055133D-010.97486158793582D+000.12769754001058D+000.39256194467048D-02 +0.50628621511148D-010.71237145285503D-02-.51694719857433D-03-.11834288161890D-01 +-.53102753330674D-030.56360976825357D-03-.47697215097663D-030.29017305641361D-05 +0.30999557406490D-03-.71120428417602D-03 + 5 e" eigenvalue=-.25508381967341D+01 nsaos=18 +-.48680062145687D-04-.84565947975514D-040.53072490506891D-03-.25584445314502D-03 +-.71967708059675D+00-.53705092522821D-010.66826298437841D+00-.39952167491219D-01 +-.40392302203449D-020.37415221790324D-010.11802359356337D-010.21221853862474D-02 +-.11491348718615D-01-.39670003872899D-02-.92340979003079D-05-.19880698290267D-03 +0.18928473529319D-020.13598890790145D-02 + 6 e" eigenvalue=-.21624429391541D+00 nsaos=18 +0.64467525826326D-010.41145701892514D+000.78354954103768D+000.44849078421334D+00 +-.31125502157080D-01-.81908836090710D-01-.64739688784289D-010.48533487767144D-01 +0.14517385259239D+000.11063513193135D+000.29891455834473D-010.13408048550995D+00 +0.13536813488159D+00-.98049710734488D-020.13492113773295D-010.20992140446594D-01 +-.43193343804864D-01-.11965422103043D-02 + 7 e" eigenvalue=-.87173172658686D-01 nsaos=18 +0.14675052024582D-010.95727073897164D-010.22839807107264D+00-.14231892434993D+00 +-.11855552512485D+000.19303543473665D+00-.27854441170163D-010.21995999721517D+00 +-.36012041382460D+000.50222666514884D-010.57351842811549D+00-.60142682235509D+00 +0.22428659113499D+000.17850806296646D-010.30298904531282D-01-.46114310587781D-01 +0.43078557997674D-010.29257130021599D-01 + 8 e" eigenvalue=0.50655510428928D-01 nsaos=18 +-.35535593225420D-03-.20183206545633D-02-.16341165292806D-010.14294210115700D+00 +0.12599416215925D+000.51773890527203D-01-.14379545965629D+00-.23103407460135D+00 +-.91778501871897D-010.26401424992953D+00-.15571892495348D+01-.65358923355727D+00 +0.16872867235070D+010.11988826017388D+00-.11192480224650D-010.22082897198748D-01 +-.57192066678858D-01-.22740169728108D-01 + 9 e" eigenvalue=0.67488396345456D-01 nsaos=18 +-.55857954253383D-01-.38209629627811D+00-.12210236300415D+01-.20719168109735D+01 +-.81172496297238D-01-.51644472491488D-02-.68186076715462D-010.15928578746998D+00 +-.69359228104266D-010.91477002139877D-010.13420881958065D+010.84545863317218D+00 +0.15865368812168D+010.61527286620459D-010.35171580392654D-010.49383392173988D-01 +0.16163608609551D+000.24544663540876D-01 + 10 e" eigenvalue=0.18215663779066D+00 nsaos=18 +-.31394332363377D-01-.22885510331179D+00-.25813970641868D+010.13942318216991D+02 +0.10638551461330D+00-.32895301114552D-010.79530867744867D-01-.25351318780354D+00 +0.15006211321862D+00-.17061862979953D+00-.36356977263962D+01-.21148029189043D+01 +-.36620697901555D+01-.51094947822262D-010.55936970105512D-03-.15774020101713D-01 +-.13522807665204D+00-.10861399125304D-01 + 11 e" eigenvalue=0.27387473333415D+00 nsaos=18 +-.10324869856860D-01-.63938376997969D-010.10000788313048D+01-.95020235807775D+01 +0.75641026454912D-01-.25549339938116D+00-.48163857838781D-01-.45691903998316D+00 +0.10282945959465D+010.80164562267260D-010.39069482280879D+010.41975340219057D+00 +0.28514434184432D+01-.21612930062430D-010.87751353954649D-01-.88858807138803D-01 +-.26631601779005D+000.14854651773144D+00 + 12 e" eigenvalue=0.36483262377547D+00 nsaos=18 +-.11185882033867D-02-.79043356490962D-020.31231720863734D-01-.51185907313322D+00 +0.20999211704373D+000.11703670187676D+00-.24649423371173D+00-.81901151462303D+00 +-.44378097493978D+000.95661381856223D+000.21463804416374D+010.93166591922148D+00 +-.21330244297490D+010.22330184389301D+00-.30215024448192D-010.16212589251725D-01 +-.97856246132299D-01-.61557995188938D-01 + 13 e" eigenvalue=0.39157427319579D+00 nsaos=18 +-.16254627558573D-01-.11322896714925D+00-.16019274665117D+010.13221708152850D+02 +-.20846991095955D+00-.14925746525248D+00-.24505405133311D+000.84781729653649D+00 +0.53024095340356D+000.96776395988410D+00-.46181905220910D+01-.21795986618116D+01 +-.46725949938494D+010.10536800819852D+00-.25945275752843D-020.10140294153449D+00 +0.26131474748787D+00-.81105391536244D-02 + 14 e" eigenvalue=0.45629299086361D+00 nsaos=18 +-.95372327833178D-02-.65568366869938D-010.35603767242175D-01-.16947533926057D+01 +-.74245326929021D-010.50139991763849D-01-.23534641724538D-010.23476755107957D+00 +-.16984040356131D+000.82884363911173D-010.54740004199543D+000.27726956802082D+00 +0.41812917097521D+00-.12816689326091D+00-.28482302523594D+000.73933617070058D+00 +-.49593122720624D+000.38022755412039D+00 + 15 e" eigenvalue=0.51682937031442D+00 nsaos=18 +0.20912975832727D-010.14655532173515D+000.25889835689902D+000.13626309882584D+01 +0.14741762172024D+00-.72240826879808D-010.82157458558238D-01-.56869450004545D+00 +0.37187475906218D+00-.27918720667102D+000.38436940733765D-01-.77378829251100D+00 +-.36358672210939D+000.17488335016226D+00-.47138288618276D+000.47280921095716D+00 +0.67786855491383D+000.22929472891898D-01 + 16 e" eigenvalue=0.59757950116243D+00 nsaos=18 +-.49503942856344D-02-.31725144022595D-010.62397140922192D+00-.56277272382544D+01 +0.16551775821247D-01-.23908502885682D-01-.80209845631242D-02-.15533584181826D+00 +0.19814570318836D+000.45712879412457D-020.21184700086419D+010.36317151857929D+00 +0.16449654987615D+01-.31563618932545D+000.48462620416442D+000.56519870946277D+00 +-.90666483143813D-01-.84540375841303D+00 + 17 e" eigenvalue=0.70418753972020D+00 nsaos=18 +0.15823186117918D-010.10867531133853D+00-.90850543637438D+000.11260512138686D+02 +0.57309220840162D-010.29216393863517D-010.49514104035503D-01-.36240280514925D-01 +-.17181061220439D+00-.58995710366083D-01-.40224011756480D+01-.13971139729551D+01 +-.37984442141006D+010.31801379588126D+000.97275777155335D+000.31868228444244D+00 +0.36768011796804D+000.67541301717548D+00 + 18 e" eigenvalue=0.82396385626053D+00 nsaos=18 +-.94686196811999D-03-.88112934265995D-02-.19327878951240D+000.12195953795459D+01 +0.10042496567149D+000.42558830995330D-01-.13274687216797D+00-.28394061162725D+00 +-.16529281164407D+000.43491904276861D+00-.13312319472004D+01-.39727781684242D+00 +0.62997229046178D+00-.13437000535058D+010.25998221272014D-01-.99762681565540D-01 +0.45361577628614D+000.41485206788410D+00 +$alpha shells + a1' 1-7 ( 1 ) + a2' 1 ( 1 ) + e' 1-7 ( 1 ) + a1" 1 ( 1 ) + a2" 1-5 ( 1 ) + e" 1-6 ( 1 ) +$beta shells + a1' 1-7 ( 1 ) + a2' 1 ( 1 ) + e' 1-6 ( 1 ) + a1" 1 ( 1 ) + a2" 1-5 ( 1 ) + e" 1-6 ( 1 ) +$scfiterlimit 30 +$thize .10000000E-04 +$thime 5 +$scfdump +$scfintunit + unit=30 size=0 file=twoint +$scfdiis start=0.5 +$drvopt + cartesian on + basis off + global off + hessian on + dipole on + nuclear polarizability +$interconversion off + qconv=1.d-10 + maxiter=25 +$optimize + internal on + cartesian off + global off + basis off logarithm +$coordinateupdate + dqmax=0.3 + interpolate on + statistics 5 +$forceupdate + ahlrichs numgeo=0 mingeo=3 maxgeo=4 modus= dynamic fail=0.8 + threig=0.005 reseig=0.005 thrbig=3.0 scale=1.00 damping=0.0 +$forceinit on + diag=default +$energy SCF SCFKIN SCFPOT + 1 -1454.248687078 1449.000479320 -2903.249166398 +$lock off +$dft + functional b-p + gridsize m3 +$scfdamp start=1.000 step= .050 min= .050 +$scforbitalshift closedshell=.05 +$ricore 40 +$ridft +$jbas +* +al def-SV(P) +* + 8 s + 2838.128794 .989014662D+00 + 1055.505258 .174006712D+01 + 400.895672 .512581286D+01 + 155.220479 .824241456D+01 + 61.145855 .486552632D+01 + 24.456357 -.109354000D+01 + 9.910292 .223516080D+01 + 4.059531 .386939384D+01 + 1 s + 1.677074 .537999440D+00 + 1 s + 0.697078 -.104401896D+00 + 1 s + 0.290810 .204070572D+00 + 1 s + 0.121471 .821408896D-01 + 2 p + 0.934868 -.361592538D-02 + 0.345754 -.722039941D-02 + 1 p + 0.138538 -.346815869D-01 + 1 p + 0.057097 -.216465439D-03 + 4 d + 15.369612 .185079769D-01 + 4.052294 .294448103D-03 + 1.241444 -.899571884D-02 + 0.421258 .321560555D-01 + 1 d + 0.148264 .214855991D-01 + 1 f + 0.500348 .195741334D-01 +* +$scfconv 7 +$last step escf +$last SCF energy change = -.15543264E-07 +$maximum norm of cartesian gradient = .36216181E-04 +$maximum norm of internal gradient = .51217414E-04 +$scfinstab urpa +$rpacor 50 +$soes all 1 +$scfmo file=mos +$maxcor 500 MiB per_core +$forceapprox file=forceapprox +$closed shells + a1' 1-6 ( 2 ) + a2' 1 ( 2 ) + e' 1-7 ( 2 ) + a1" 1 ( 2 ) + a2" 1-5 ( 2 ) + e" 1-6 ( 2 ) +$end diff --git a/turbomoleio/testfiles/outputs/generation/escf/Al6_columns/TM_v7.5.1/coord b/turbomoleio/testfiles/outputs/generation/escf/Al6_columns/TM_v7.5.1/coord new file mode 100644 index 0000000..3ff06dc --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/escf/Al6_columns/TM_v7.5.1/coord @@ -0,0 +1,13 @@ +$coord + 2.91365084610274 .00000000000000 2.47857830304803 al + -1.45682542305137 2.52329565048299 2.47857830304803 al + -1.45682542305137 -2.52329565048299 2.47857830304803 al + 2.91365084610274 .00000000000000 -2.47857830304803 al + -1.45682542305137 -2.52329565048299 -2.47857830304803 al + -1.45682542305137 2.52329565048299 -2.47857830304803 al +$intdef +# definitions of internal coordinates + 1 k 1.0000000000000 stre 1 2 val= 5.04125 + 2 k 1.0000000000000 stre 1 4 val= 4.96798 +$user-defined bonds +$end \ No newline at end of file diff --git a/turbomoleio/testfiles/outputs/generation/escf/h2o_ridft_rpat/TM_v7.5.1/auxbasis b/turbomoleio/testfiles/outputs/generation/escf/h2o_ridft_rpat/TM_v7.5.1/auxbasis new file mode 100644 index 0000000..95e3afe --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/escf/h2o_ridft_rpat/TM_v7.5.1/auxbasis @@ -0,0 +1,48 @@ +$jbas +* +o def-SV(P) +# o (8s3p3d1f) / [6s3p3d1f] {311111/111/111/1} +* + 3 s + 896.10357000 0.59760749700 + 269.72523200 1.5358077900 + 85.615077000 4.0470231300 + 1 s + 28.445035000 3.4984208300 + 1 s + 9.8069810000 -0.24387498700E-01 + 1 s + 3.4747220000 0.32147717800 + 1 s + 1.2519210000 1.1625987000 + 1 s + 0.45361300000 0.25268306900 + 1 p + 0.61470886295 -0.85578439300E-01 + 1 p + 1.4753012711 0.41799959400E-01 + 1 p + 3.6956296840 -0.58551078600E-01 + 1 d + 7.6526720000 0.88298462700E-01 + 1 d + 2.2178680000 0.11926244900 + 1 d + 0.68233700000 0.44873891700E-01 + 1 f + 2.1917808219 1.0000000000 +* +h def-SV(P) +# h (4s2p) / [2s1p] {31/2} +* + 3 s + 9.3081300000 0.34466183000E-01 + 2.3067180000 0.12253379600 + 0.75201200000 0.18250021100 + 1 s + 0.27397800000 0.22150547900E-01 + 2 p + 2.0327040000 0.29513659100E-01 + 0.79025200000 0.32755872800E-01 +* +$end diff --git a/turbomoleio/testfiles/outputs/generation/escf/h2o_ridft_rpat/TM_v7.5.1/basis b/turbomoleio/testfiles/outputs/generation/escf/h2o_ridft_rpat/TM_v7.5.1/basis new file mode 100644 index 0000000..0f3cddc --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/escf/h2o_ridft_rpat/TM_v7.5.1/basis @@ -0,0 +1,35 @@ +$basis +* +o def-SV(P) +# o (7s4p1d) / [3s2p1d] {511/31/1} +* + 5 s + 2266.1767785 -0.53431809926E-02 + 340.87010191 -0.39890039230E-01 + 77.363135167 -0.17853911985 + 21.479644940 -0.46427684959 + 6.6589433124 -0.44309745172 + 1 s + 0.80975975668 1.0000000000 + 1 s + 0.25530772234 1.0000000000 + 3 p + 17.721504317 0.43394573193E-01 + 3.8635505440 0.23094120765 + 1.0480920883 0.51375311064 + 1 p + 0.27641544411 1.0000000000 + 1 d + 1.2000000000 1.0000000000 +* +h def-SV(P) +# h (4s) / [2s] {31} +* + 3 s + 13.010701000 0.19682158000E-01 + 1.9622572000 0.13796524000 + 0.44453796000 0.47831935000 + 1 s + 0.12194962000 1.0000000000 +* +$end diff --git a/turbomoleio/testfiles/outputs/generation/escf/h2o_ridft_rpat/TM_v7.5.1/control b/turbomoleio/testfiles/outputs/generation/escf/h2o_ridft_rpat/TM_v7.5.1/control new file mode 100644 index 0000000..32f03b1 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/escf/h2o_ridft_rpat/TM_v7.5.1/control @@ -0,0 +1,77 @@ +$title +ridft_escf +$symmetry c2v +$redundant file=coord +$user-defined bonds file=coord +$coord file=coord +$intdef file=coord +$optimize + internal on + redundant off + cartesian off + global off + basis off +$atoms +o 1 \ + basis =o def-SV(P) \ + jbas =o def-SV(P) +h 2-3 \ + basis =h def-SV(P) \ + jbas =h def-SV(P) +$basis file=basis +$scfmo file=mos +$closed shells + a1 1-3 ( 2 ) + b1 1 ( 2 ) + b2 1 ( 2 ) +$scfiterlimit 200 +$thize 0.10000000E-04 +$thime 5 +$scfdamp start=0.300 step=0.050 min=0.100 +$scfdump +$scfintunit + unit=30 size=0 file=twoint +$scfdiis +$scforbitalshift automatic=.1 +$drvopt + cartesian on + basis off + global off + hessian on + dipole on + nuclear polarizability +$interconversion off + qconv=1.d-7 + maxiter=25 +$coordinateupdate + dqmax=0.3 + interpolate on + statistics 5 +$forceupdate + ahlrichs numgeo=0 mingeo=3 maxgeo=4 modus= dynamic fail=0.3 + threig=0.005 reseig=0.005 thrbig=3.0 scale=1.00 damping=0.0 +$forceinit on + diag=default +$energy file=energy +$grad file=gradient +$forceapprox file=forceapprox +$scfinstab rpat +$soes + a1 10 + a2 9 + b1 10 + b2 10 +$denconv 1d-7 +$dft + functional b-p + gridsize m3 +$scfconv 7 +$ricore 500 +$rij +$jbas file=auxbasis +$rundimensions + natoms=3 + nbf(CAO)=19 + nbf(AO)=18 +$last step define +$end diff --git a/turbomoleio/testfiles/outputs/generation/escf/h2o_ridft_rpat/TM_v7.5.1/coord b/turbomoleio/testfiles/outputs/generation/escf/h2o_ridft_rpat/TM_v7.5.1/coord new file mode 100644 index 0000000..fcfd9aa --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/escf/h2o_ridft_rpat/TM_v7.5.1/coord @@ -0,0 +1,30 @@ +# RCS ################################################################ +# $Id: h2o,v 1.1 1992/04/14 15:03:13 chi Exp $ +# $Log: h2o,v $ +# Revision 1.1 1992/04/14 15:03:13 chi +# Initial revision +# +# RCS ################################################################ +$coord + 0.00000000000000 0.00000000000000 -0.72557892405437 o + 1.41713420892173 0.00000000000000 0.36278946202719 h + -1.41713420892173 0.00000000000000 0.36278946202719 h +$intdef +# definitions of internal coordinates + 1 k 1.0000000000000 stre 2 1 val= 1.78685 + 2 k 1.0000000000000 bend 2 3 1 val= 104.95100 +$redundant + number_of_atoms 3 + degrees_of_freedom 2 + internal_coordinates 2 + frozen_coordinates 0 +# definitions of redundant internals + 1 k 1.0000000000000 stre 1 2 val= 1.78685 + 2 k 1.0000000000000 bend 3 2 1 val= 104.95100 + 2 non zero eigenvalues of BmBt + 1 2.360224921 1 0 + 1 + 2 0.796203512 2 0 + 2 +$user-defined bonds +$end diff --git a/turbomoleio/testfiles/outputs/generation/escf/h2o_ridft_rpat/control b/turbomoleio/testfiles/outputs/generation/escf/h2o_ridft_rpat/control index 32f03b1..42c7728 100644 --- a/turbomoleio/testfiles/outputs/generation/escf/h2o_ridft_rpat/control +++ b/turbomoleio/testfiles/outputs/generation/escf/h2o_ridft_rpat/control @@ -1,5 +1,3 @@ -$title -ridft_escf $symmetry c2v $redundant file=coord $user-defined bonds file=coord @@ -20,10 +18,6 @@ h 2-3 \ jbas =h def-SV(P) $basis file=basis $scfmo file=mos -$closed shells - a1 1-3 ( 2 ) - b1 1 ( 2 ) - b2 1 ( 2 ) $scfiterlimit 200 $thize 0.10000000E-04 $thime 5 @@ -74,4 +68,11 @@ $rundimensions nbf(CAO)=19 nbf(AO)=18 $last step define +$maxcor 500 MiB per_core +$title +ridft_escf +$closed shells + a1 1-3 ( 2 ) + b1 1 ( 2 ) + b2 1 ( 2 ) $end diff --git a/turbomoleio/testfiles/outputs/generation/escf/no3_ridft_cosmo/TM_v7.5.1/auxbasis b/turbomoleio/testfiles/outputs/generation/escf/no3_ridft_cosmo/TM_v7.5.1/auxbasis new file mode 100644 index 0000000..6da7ef5 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/escf/no3_ridft_cosmo/TM_v7.5.1/auxbasis @@ -0,0 +1,67 @@ +$jbas +* +o def-SV(P) +# o (8s3p3d1f) / [6s3p3d1f] {311111/111/111/1} +* + 3 s + 896.10357000 0.59760749700 + 269.72523200 1.5358077900 + 85.615077000 4.0470231300 + 1 s + 28.445035000 3.4984208300 + 1 s + 9.8069810000 -0.24387498700E-01 + 1 s + 3.4747220000 0.32147717800 + 1 s + 1.2519210000 1.1625987000 + 1 s + 0.45361300000 0.25268306900 + 1 p + 0.61470886295 -0.85578439300E-01 + 1 p + 1.4753012711 0.41799959400E-01 + 1 p + 3.6956296840 -0.58551078600E-01 + 1 d + 7.6526720000 0.88298462700E-01 + 1 d + 2.2178680000 0.11926244900 + 1 d + 0.68233700000 0.44873891700E-01 + 1 f + 2.1917808219 1.0000000000 +* +n def-SV(P) +# n (8s3p3d1f) / [6s3p3d1f] {311111/111/111/1} +* + 3 s + 680.54253000 0.50257896200 + 196.75621400 1.3247898800 + 61.270793000 3.4140611100 + 1 s + 20.364463000 2.6503410200 + 1 s + 7.1424770000 -0.30130261700E-02 + 1 s + 2.6080260000 0.12287191200 + 1 s + 0.97637300000 0.81803157200 + 1 s + 0.36863300000 0.19429463900 + 1 p + 0.47073919407 0.67405747100E-01 + 1 p + 1.1297740658 -0.22505550600E-01 + 1 p + 2.8300840347 0.35545572100E-01 + 1 d + 5.8329865000 0.41604040300E-01 + 1 d + 1.7326865000 0.11059698000E-01 + 1 d + 0.54524250000 0.48407961900E-01 + 1 f + 1.8264800000 1.0000000000 +* +$end diff --git a/turbomoleio/testfiles/outputs/generation/escf/no3_ridft_cosmo/TM_v7.5.1/basis b/turbomoleio/testfiles/outputs/generation/escf/no3_ridft_cosmo/TM_v7.5.1/basis new file mode 100644 index 0000000..f8aba83 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/escf/no3_ridft_cosmo/TM_v7.5.1/basis @@ -0,0 +1,47 @@ +$basis +* +o def-SV(P) +# o (7s4p1d) / [3s2p1d] {511/31/1} +* + 5 s + 2266.1767785 -0.53431809926E-02 + 340.87010191 -0.39890039230E-01 + 77.363135167 -0.17853911985 + 21.479644940 -0.46427684959 + 6.6589433124 -0.44309745172 + 1 s + 0.80975975668 1.0000000000 + 1 s + 0.25530772234 1.0000000000 + 3 p + 17.721504317 0.43394573193E-01 + 3.8635505440 0.23094120765 + 1.0480920883 0.51375311064 + 1 p + 0.27641544411 1.0000000000 + 1 d + 1.2000000000 1.0000000000 +* +n def-SV(P) +# n (7s4p1d) / [3s2p1d] {511/31/1} +* + 5 s + 1712.8415853 -0.53934125305E-02 + 257.64812677 -0.40221581118E-01 + 58.458245853 -0.17931144990 + 16.198367905 -0.46376317823 + 5.0052600809 -0.44171422662 + 1 s + 0.58731856571 1.0000000000 + 1 s + 0.18764592253 1.0000000000 + 3 p + 13.571470233 -0.40072398852E-01 + 2.9257372874 -0.21807045028 + 0.79927750754 -0.51294466049 + 1 p + 0.21954348034 1.0000000000 + 1 d + 1.0000000000 1.0000000000 +* +$end diff --git a/turbomoleio/testfiles/outputs/generation/escf/no3_ridft_cosmo/TM_v7.5.1/control b/turbomoleio/testfiles/outputs/generation/escf/no3_ridft_cosmo/TM_v7.5.1/control new file mode 100644 index 0000000..a555965 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/escf/no3_ridft_cosmo/TM_v7.5.1/control @@ -0,0 +1,76 @@ +$title +ridft_escf +$symmetry c1 +$user-defined bonds file=coord +$coord file=coord +$optimize + internal off + redundant off + cartesian on + global off + basis off +$atoms +o 1,3-4 \ + basis =o def-SV(P) \ + jbas =o def-SV(P) +n 2 \ + basis =n def-SV(P) \ + jbas =n def-SV(P) +$basis file=basis +$uhfmo_alpha file=alpha +$uhfmo_beta file=beta +$uhf +$alpha shells + a 1-16 ( 1 ) +$beta shells + a 1-15 ( 1 ) +$scfiterlimit 200 +$thize 0.10000000E-04 +$thime 5 +$scfdamp start=1.000 step=0.050 min=0.100 +$scfdump +$scfintunit + unit=30 size=0 file=twoint +$scfdiis +$drvopt + cartesian on + basis off + global off + hessian on + dipole on + nuclear polarizability +$interconversion off + qconv=1.d-7 + maxiter=25 +$coordinateupdate + dqmax=0.3 + interpolate on + statistics 5 +$forceupdate + ahlrichs numgeo=0 mingeo=3 maxgeo=4 modus= dynamic fail=0.3 + threig=0.005 reseig=0.005 thrbig=3.0 scale=1.00 damping=0.0 +$forceinit on + diag=default +$energy file=energy +$grad file=gradient +$forceapprox file=forceapprox +$scfinstab urpa +$soes + a 10 +$denconv 1d-7 +$dft + functional b-p + gridsize m3 +$scfconv 7 +$scforbitalshift closedshell=.05 +$ricore 500 +$rij +$jbas file=auxbasis +$rundimensions + natoms=4 + nbf(CAO)=60 + nbf(AO)=56 +$last step define +$cosmo +$cosmo_out = out.cosmo +$end diff --git a/turbomoleio/testfiles/outputs/generation/escf/no3_ridft_cosmo/TM_v7.5.1/coord b/turbomoleio/testfiles/outputs/generation/escf/no3_ridft_cosmo/TM_v7.5.1/coord new file mode 100644 index 0000000..69f99d3 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/escf/no3_ridft_cosmo/TM_v7.5.1/coord @@ -0,0 +1,7 @@ +$coord + -1.15103063747470 -1.99364354517457 0.00000000000000 o + 0.00000000000000 0.00000000000000 0.00000000000000 n + -1.15103063747470 1.99364354517457 0.00000000000000 o + 2.30206127494940 0.00000000000000 0.00000000000000 o +$user-defined bonds +$end diff --git a/turbomoleio/testfiles/outputs/generation/escf/no3_ridft_cosmo/control b/turbomoleio/testfiles/outputs/generation/escf/no3_ridft_cosmo/control index a555965..d6fa1de 100644 --- a/turbomoleio/testfiles/outputs/generation/escf/no3_ridft_cosmo/control +++ b/turbomoleio/testfiles/outputs/generation/escf/no3_ridft_cosmo/control @@ -1,5 +1,3 @@ -$title -ridft_escf $symmetry c1 $user-defined bonds file=coord $coord file=coord @@ -20,10 +18,6 @@ $basis file=basis $uhfmo_alpha file=alpha $uhfmo_beta file=beta $uhf -$alpha shells - a 1-16 ( 1 ) -$beta shells - a 1-15 ( 1 ) $scfiterlimit 200 $thize 0.10000000E-04 $thime 5 @@ -73,4 +67,11 @@ $rundimensions $last step define $cosmo $cosmo_out = out.cosmo +$maxcor 500 MiB per_core +$title +ridft_escf +$alpha shells + a 1-16 ( 1 ) +$beta shells + a 1-15 ( 1 ) $end diff --git a/turbomoleio/testfiles/outputs/generation/grad/h2o_std/TM_v7.5.1/basis b/turbomoleio/testfiles/outputs/generation/grad/h2o_std/TM_v7.5.1/basis new file mode 100644 index 0000000..0f3cddc --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/grad/h2o_std/TM_v7.5.1/basis @@ -0,0 +1,35 @@ +$basis +* +o def-SV(P) +# o (7s4p1d) / [3s2p1d] {511/31/1} +* + 5 s + 2266.1767785 -0.53431809926E-02 + 340.87010191 -0.39890039230E-01 + 77.363135167 -0.17853911985 + 21.479644940 -0.46427684959 + 6.6589433124 -0.44309745172 + 1 s + 0.80975975668 1.0000000000 + 1 s + 0.25530772234 1.0000000000 + 3 p + 17.721504317 0.43394573193E-01 + 3.8635505440 0.23094120765 + 1.0480920883 0.51375311064 + 1 p + 0.27641544411 1.0000000000 + 1 d + 1.2000000000 1.0000000000 +* +h def-SV(P) +# h (4s) / [2s] {31} +* + 3 s + 13.010701000 0.19682158000E-01 + 1.9622572000 0.13796524000 + 0.44453796000 0.47831935000 + 1 s + 0.12194962000 1.0000000000 +* +$end diff --git a/turbomoleio/testfiles/outputs/generation/grad/h2o_std/TM_v7.5.1/control b/turbomoleio/testfiles/outputs/generation/grad/h2o_std/TM_v7.5.1/control new file mode 100644 index 0000000..765c675 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/grad/h2o_std/TM_v7.5.1/control @@ -0,0 +1,65 @@ +$title +dscf +$symmetry c2v +$redundant file=coord +$user-defined bonds file=coord +$coord file=coord +$optimize + internal on + redundant on + cartesian off + global off + basis off +$atoms +o 1 \ + basis =o def-SV(P) +h 2-3 \ + basis =h def-SV(P) +$basis file=basis +$scfmo file=mos +$closed shells + a1 1-3 ( 2 ) + b1 1 ( 2 ) + b2 1 ( 2 ) +$scfiterlimit 200 +$thize 0.10000000E-04 +$thime 5 +$scfdamp start=0.300 step=0.050 min=0.100 +$scfdump +$scfintunit + unit=30 size=0 file=twoint +$scfdiis +$maxcor 500 MiB per_core +$scforbitalshift automatic=.1 +$drvopt + cartesian on + basis off + global off + hessian on + dipole on + nuclear polarizability +$interconversion off + qconv=1.d-7 + maxiter=25 +$coordinateupdate + dqmax=0.3 + interpolate on + statistics 5 +$forceupdate + ahlrichs numgeo=0 mingeo=3 maxgeo=4 modus= dynamic fail=0.3 + threig=0.005 reseig=0.005 thrbig=3.0 scale=1.00 damping=0.0 +$forceinit on + diag=default +$energy file=energy +$grad file=gradient +$forceapprox file=forceapprox +$dft + functional b-p + gridsize m3 +$scfconv 7 +$rundimensions + natoms=3 + nbf(CAO)=19 + nbf(AO)=18 +$last step define +$end diff --git a/turbomoleio/testfiles/outputs/generation/grad/h2o_std/TM_v7.5.1/coord b/turbomoleio/testfiles/outputs/generation/grad/h2o_std/TM_v7.5.1/coord new file mode 100644 index 0000000..9096b45 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/grad/h2o_std/TM_v7.5.1/coord @@ -0,0 +1,26 @@ +# RCS ################################################################ +# $Id: h2o,v 1.1 1992/04/14 15:03:13 chi Exp $ +# $Log: h2o,v $ +# Revision 1.1 1992/04/14 15:03:13 chi +# Initial revision +# +# RCS ################################################################ +$coord + 0.00000000000000 0.00000000000000 -0.72557892000000 o + 1.41713421000000 0.00000000000000 0.36278946000000 h + -1.41713421000000 0.00000000000000 0.36278946000000 h +$redundant + number_of_atoms 3 + degrees_of_freedom 2 + internal_coordinates 2 + frozen_coordinates 0 +# definitions of redundant internals + 1 k 1.0000000000000 stre 1 2 val= 1.78685 + 2 k 1.0000000000000 bend 3 2 1 val= 104.95100 + 2 non zero eigenvalues of BmBt + 1 2.360224921 1 0 + 1 + 2 0.796203514 2 0 + 2 +$user-defined bonds +$end diff --git a/turbomoleio/testfiles/outputs/generation/grad/h2o_std/control b/turbomoleio/testfiles/outputs/generation/grad/h2o_std/control index 765c675..e293ad7 100644 --- a/turbomoleio/testfiles/outputs/generation/grad/h2o_std/control +++ b/turbomoleio/testfiles/outputs/generation/grad/h2o_std/control @@ -1,5 +1,3 @@ -$title -dscf $symmetry c2v $redundant file=coord $user-defined bonds file=coord @@ -17,10 +15,6 @@ h 2-3 \ basis =h def-SV(P) $basis file=basis $scfmo file=mos -$closed shells - a1 1-3 ( 2 ) - b1 1 ( 2 ) - b2 1 ( 2 ) $scfiterlimit 200 $thize 0.10000000E-04 $thime 5 @@ -62,4 +56,10 @@ $rundimensions nbf(CAO)=19 nbf(AO)=18 $last step define +$title +dscf +$closed shells + a1 1-3 ( 2 ) + b1 1 ( 2 ) + b2 1 ( 2 ) $end diff --git a/turbomoleio/testfiles/outputs/generation/jobex/h2o_dscf/TM_v7.5.1/basis b/turbomoleio/testfiles/outputs/generation/jobex/h2o_dscf/TM_v7.5.1/basis new file mode 100644 index 0000000..0f3cddc --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/jobex/h2o_dscf/TM_v7.5.1/basis @@ -0,0 +1,35 @@ +$basis +* +o def-SV(P) +# o (7s4p1d) / [3s2p1d] {511/31/1} +* + 5 s + 2266.1767785 -0.53431809926E-02 + 340.87010191 -0.39890039230E-01 + 77.363135167 -0.17853911985 + 21.479644940 -0.46427684959 + 6.6589433124 -0.44309745172 + 1 s + 0.80975975668 1.0000000000 + 1 s + 0.25530772234 1.0000000000 + 3 p + 17.721504317 0.43394573193E-01 + 3.8635505440 0.23094120765 + 1.0480920883 0.51375311064 + 1 p + 0.27641544411 1.0000000000 + 1 d + 1.2000000000 1.0000000000 +* +h def-SV(P) +# h (4s) / [2s] {31} +* + 3 s + 13.010701000 0.19682158000E-01 + 1.9622572000 0.13796524000 + 0.44453796000 0.47831935000 + 1 s + 0.12194962000 1.0000000000 +* +$end diff --git a/turbomoleio/testfiles/outputs/generation/jobex/h2o_dscf/TM_v7.5.1/control b/turbomoleio/testfiles/outputs/generation/jobex/h2o_dscf/TM_v7.5.1/control new file mode 100644 index 0000000..6827a4b --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/jobex/h2o_dscf/TM_v7.5.1/control @@ -0,0 +1,66 @@ +$title +dscf +$symmetry c2v +$redundant file=coord +$user-defined bonds file=coord +$coord file=coord +$intdef file=coord +$optimize + internal on + redundant on + cartesian off + global off + basis off +$atoms +o 1 \ + basis =o def-SV(P) +h 2-3 \ + basis =h def-SV(P) +$basis file=basis +$scfmo file=mos +$closed shells + a1 1-3 ( 2 ) + b1 1 ( 2 ) + b2 1 ( 2 ) +$scfiterlimit 200 +$thize 0.10000000E-04 +$thime 5 +$scfdamp start=0.300 step=0.050 min=0.100 +$scfdump +$scfintunit + unit=30 size=0 file=twoint +$scfdiis +$maxcor 500 MiB per_core +$scforbitalshift automatic=.1 +$drvopt + cartesian on + basis off + global off + hessian on + dipole on + nuclear polarizability +$interconversion off + qconv=1.d-7 + maxiter=25 +$coordinateupdate + dqmax=0.3 + interpolate on + statistics 5 +$forceupdate + ahlrichs numgeo=0 mingeo=3 maxgeo=4 modus= dynamic fail=0.3 + threig=0.005 reseig=0.005 thrbig=3.0 scale=1.00 damping=0.0 +$forceinit on + diag=default +$energy file=energy +$grad file=gradient +$forceapprox file=forceapprox +$dft + functional b-p + gridsize m3 +$scfconv 7 +$rundimensions + natoms=3 + nbf(CAO)=19 + nbf(AO)=18 +$last step define +$end diff --git a/turbomoleio/testfiles/outputs/generation/jobex/h2o_dscf/TM_v7.5.1/coord b/turbomoleio/testfiles/outputs/generation/jobex/h2o_dscf/TM_v7.5.1/coord new file mode 100644 index 0000000..fcfd9aa --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/jobex/h2o_dscf/TM_v7.5.1/coord @@ -0,0 +1,30 @@ +# RCS ################################################################ +# $Id: h2o,v 1.1 1992/04/14 15:03:13 chi Exp $ +# $Log: h2o,v $ +# Revision 1.1 1992/04/14 15:03:13 chi +# Initial revision +# +# RCS ################################################################ +$coord + 0.00000000000000 0.00000000000000 -0.72557892405437 o + 1.41713420892173 0.00000000000000 0.36278946202719 h + -1.41713420892173 0.00000000000000 0.36278946202719 h +$intdef +# definitions of internal coordinates + 1 k 1.0000000000000 stre 2 1 val= 1.78685 + 2 k 1.0000000000000 bend 2 3 1 val= 104.95100 +$redundant + number_of_atoms 3 + degrees_of_freedom 2 + internal_coordinates 2 + frozen_coordinates 0 +# definitions of redundant internals + 1 k 1.0000000000000 stre 1 2 val= 1.78685 + 2 k 1.0000000000000 bend 3 2 1 val= 104.95100 + 2 non zero eigenvalues of BmBt + 1 2.360224921 1 0 + 1 + 2 0.796203512 2 0 + 2 +$user-defined bonds +$end diff --git a/turbomoleio/testfiles/outputs/generation/jobex/h2o_dscf/control b/turbomoleio/testfiles/outputs/generation/jobex/h2o_dscf/control index 6827a4b..f2cdca0 100644 --- a/turbomoleio/testfiles/outputs/generation/jobex/h2o_dscf/control +++ b/turbomoleio/testfiles/outputs/generation/jobex/h2o_dscf/control @@ -1,5 +1,3 @@ -$title -dscf $symmetry c2v $redundant file=coord $user-defined bonds file=coord @@ -18,10 +16,6 @@ h 2-3 \ basis =h def-SV(P) $basis file=basis $scfmo file=mos -$closed shells - a1 1-3 ( 2 ) - b1 1 ( 2 ) - b2 1 ( 2 ) $scfiterlimit 200 $thize 0.10000000E-04 $thime 5 @@ -63,4 +57,10 @@ $rundimensions nbf(CAO)=19 nbf(AO)=18 $last step define +$title +dscf +$closed shells + a1 1-3 ( 2 ) + b1 1 ( 2 ) + b2 1 ( 2 ) $end diff --git a/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad_cosmo/auxbasis b/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad/TM_v7.5.1/auxbasis similarity index 100% rename from turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad_cosmo/auxbasis rename to turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad/TM_v7.5.1/auxbasis diff --git a/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad/TM_v7.5.1/basis b/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad/TM_v7.5.1/basis new file mode 100644 index 0000000..0f3cddc --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad/TM_v7.5.1/basis @@ -0,0 +1,35 @@ +$basis +* +o def-SV(P) +# o (7s4p1d) / [3s2p1d] {511/31/1} +* + 5 s + 2266.1767785 -0.53431809926E-02 + 340.87010191 -0.39890039230E-01 + 77.363135167 -0.17853911985 + 21.479644940 -0.46427684959 + 6.6589433124 -0.44309745172 + 1 s + 0.80975975668 1.0000000000 + 1 s + 0.25530772234 1.0000000000 + 3 p + 17.721504317 0.43394573193E-01 + 3.8635505440 0.23094120765 + 1.0480920883 0.51375311064 + 1 p + 0.27641544411 1.0000000000 + 1 d + 1.2000000000 1.0000000000 +* +h def-SV(P) +# h (4s) / [2s] {31} +* + 3 s + 13.010701000 0.19682158000E-01 + 1.9622572000 0.13796524000 + 0.44453796000 0.47831935000 + 1 s + 0.12194962000 1.0000000000 +* +$end diff --git a/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad/TM_v7.5.1/control b/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad/TM_v7.5.1/control new file mode 100644 index 0000000..66b2f2f --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad/TM_v7.5.1/control @@ -0,0 +1,72 @@ +$title +jobex_mp2_dscf_mpgrad +$symmetry c2v +$redundant file=coord +$user-defined bonds file=coord +$coord file=coord +$intdef file=coord +$optimize + internal on + redundant on + cartesian off + global off + basis off +$atoms +o 1 \ + basis =o def-SV(P) \ + cbas =o def-SV(P) +h 2-3 \ + basis =h def-SV(P) \ + cbas =h def-SV(P) +$basis file=basis +$scfmo file=mos +$closed shells + a1 1-3 ( 2 ) + b1 1 ( 2 ) + b2 1 ( 2 ) +$scfiterlimit 200 +$scfconv 7 +$thize 0.10000000E-04 +$thime 5 +$scfdamp start=0.300 step=0.050 min=0.100 +$scfdump +$scfintunit + unit=30 size=0 file=twoint +$scfdiis +$maxcor 500 MiB per_core +$scforbitalshift automatic=.1 +$drvopt + cartesian on + basis off + global off + hessian on + dipole on + nuclear polarizability +$interconversion off + qconv=1.d-7 + maxiter=25 +$coordinateupdate + dqmax=0.3 + interpolate on + statistics 5 +$forceupdate + ahlrichs numgeo=0 mingeo=3 maxgeo=4 modus= dynamic fail=0.3 + threig=0.005 reseig=0.005 thrbig=3.0 scale=1.00 damping=0.0 +$forceinit on + diag=default +$energy file=energy +$grad file=gradient +$forceapprox file=forceapprox +$denconv 0.10000000E-06 +$freeze + implicit core= 1 virt= 0 +$cbas file=auxbasis +$ricc2 + mp2 + geoopt model=mp2 state=(x) +$rundimensions + natoms=3 + nbf(CAO)=19 + nbf(AO)=18 +$last step define +$end diff --git a/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad/TM_v7.5.1/coord b/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad/TM_v7.5.1/coord new file mode 100644 index 0000000..fcfd9aa --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad/TM_v7.5.1/coord @@ -0,0 +1,30 @@ +# RCS ################################################################ +# $Id: h2o,v 1.1 1992/04/14 15:03:13 chi Exp $ +# $Log: h2o,v $ +# Revision 1.1 1992/04/14 15:03:13 chi +# Initial revision +# +# RCS ################################################################ +$coord + 0.00000000000000 0.00000000000000 -0.72557892405437 o + 1.41713420892173 0.00000000000000 0.36278946202719 h + -1.41713420892173 0.00000000000000 0.36278946202719 h +$intdef +# definitions of internal coordinates + 1 k 1.0000000000000 stre 2 1 val= 1.78685 + 2 k 1.0000000000000 bend 2 3 1 val= 104.95100 +$redundant + number_of_atoms 3 + degrees_of_freedom 2 + internal_coordinates 2 + frozen_coordinates 0 +# definitions of redundant internals + 1 k 1.0000000000000 stre 1 2 val= 1.78685 + 2 k 1.0000000000000 bend 3 2 1 val= 104.95100 + 2 non zero eigenvalues of BmBt + 1 2.360224921 1 0 + 1 + 2 0.796203512 2 0 + 2 +$user-defined bonds +$end diff --git a/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad/control b/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad/control index 66b2f2f..f45509e 100644 --- a/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad/control +++ b/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad/control @@ -1,5 +1,3 @@ -$title -jobex_mp2_dscf_mpgrad $symmetry c2v $redundant file=coord $user-defined bonds file=coord @@ -20,10 +18,6 @@ h 2-3 \ cbas =h def-SV(P) $basis file=basis $scfmo file=mos -$closed shells - a1 1-3 ( 2 ) - b1 1 ( 2 ) - b2 1 ( 2 ) $scfiterlimit 200 $scfconv 7 $thize 0.10000000E-04 @@ -69,4 +63,10 @@ $rundimensions nbf(CAO)=19 nbf(AO)=18 $last step define +$title +jobex_mp2_dscf_mpgrad +$closed shells + a1 1-3 ( 2 ) + b1 1 ( 2 ) + b2 1 ( 2 ) $end diff --git a/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad_cosmo/TM_v7.5.1/auxbasis b/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad_cosmo/TM_v7.5.1/auxbasis new file mode 100644 index 0000000..576402b --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad_cosmo/TM_v7.5.1/auxbasis @@ -0,0 +1,64 @@ +$cbas +* +o def-SV(P) +# o (8s6p5d3f) / [6s5p4d1f] {311111/21111/2111/3} +* + 3 s + 364.91291000 0.58060367000 + 77.387094000 1.4017984900 + 24.301706000 0.34994578000 + 1 s + 8.4369545000 1.0000000000 + 1 s + 3.1527941000 1.0000000000 + 1 s + 1.5775430000 1.0000000000 + 1 s + 0.78178244000 1.0000000000 + 1 s + 0.31652679000 1.0000000000 + 2 p + 56.735948000 1.0602441000 + 14.997217000 1.2003825800 + 1 p + 5.6428116000 1.0000000000 + 1 p + 2.4069219800 1.0000000000 + 1 p + 1.0264059600 1.0000000000 + 1 p + 0.43769977000 1.0000000000 + 2 d + 12.446821000 1.1371699500 + 6.1216917000 0.77017590000 + 1 d + 2.7102949000 1.0000000000 + 1 d + 1.1524061000 1.0000000000 + 1 d + 0.41386174000 1.0000000000 + 3 f + 4.7793539000 0.25251741000 + 2.3204642000 1.7867127800 + 1.0912804000 0.32923623000 +* +h def-SV(P) +# h (4s3p2d) / [3s2p1d] {211/21/2} +* + 2 s + 9.3352160900 0.64609379000 + 1.8611070400 1.3700524100 + 1 s + 0.59512466000 1.0000000000 + 1 s + 0.26448099000 1.0000000000 + 2 p + 2.4524982100 0.13284956000 + 1.3540383000 1.4527621500 + 1 p + 0.59522394000 1.0000000000 + 2 d + 1.5816376600 1.4936739700 + 0.62743960000 -0.10706900000E-01 +* +$end diff --git a/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad_cosmo/TM_v7.5.1/basis b/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad_cosmo/TM_v7.5.1/basis new file mode 100644 index 0000000..0f3cddc --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad_cosmo/TM_v7.5.1/basis @@ -0,0 +1,35 @@ +$basis +* +o def-SV(P) +# o (7s4p1d) / [3s2p1d] {511/31/1} +* + 5 s + 2266.1767785 -0.53431809926E-02 + 340.87010191 -0.39890039230E-01 + 77.363135167 -0.17853911985 + 21.479644940 -0.46427684959 + 6.6589433124 -0.44309745172 + 1 s + 0.80975975668 1.0000000000 + 1 s + 0.25530772234 1.0000000000 + 3 p + 17.721504317 0.43394573193E-01 + 3.8635505440 0.23094120765 + 1.0480920883 0.51375311064 + 1 p + 0.27641544411 1.0000000000 + 1 d + 1.2000000000 1.0000000000 +* +h def-SV(P) +# h (4s) / [2s] {31} +* + 3 s + 13.010701000 0.19682158000E-01 + 1.9622572000 0.13796524000 + 0.44453796000 0.47831935000 + 1 s + 0.12194962000 1.0000000000 +* +$end diff --git a/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad_cosmo/control b/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad_cosmo/TM_v7.5.1/control similarity index 100% rename from turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad_cosmo/control rename to turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad_cosmo/TM_v7.5.1/control diff --git a/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad_cosmo/TM_v7.5.1/coord b/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad_cosmo/TM_v7.5.1/coord new file mode 100644 index 0000000..fcfd9aa --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad_cosmo/TM_v7.5.1/coord @@ -0,0 +1,30 @@ +# RCS ################################################################ +# $Id: h2o,v 1.1 1992/04/14 15:03:13 chi Exp $ +# $Log: h2o,v $ +# Revision 1.1 1992/04/14 15:03:13 chi +# Initial revision +# +# RCS ################################################################ +$coord + 0.00000000000000 0.00000000000000 -0.72557892405437 o + 1.41713420892173 0.00000000000000 0.36278946202719 h + -1.41713420892173 0.00000000000000 0.36278946202719 h +$intdef +# definitions of internal coordinates + 1 k 1.0000000000000 stre 2 1 val= 1.78685 + 2 k 1.0000000000000 bend 2 3 1 val= 104.95100 +$redundant + number_of_atoms 3 + degrees_of_freedom 2 + internal_coordinates 2 + frozen_coordinates 0 +# definitions of redundant internals + 1 k 1.0000000000000 stre 1 2 val= 1.78685 + 2 k 1.0000000000000 bend 3 2 1 val= 104.95100 + 2 non zero eigenvalues of BmBt + 1 2.360224921 1 0 + 1 + 2 0.796203512 2 0 + 2 +$user-defined bonds +$end diff --git a/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad_cosmo/test.yaml b/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad_cosmo/test.yaml index 57fd514..c2b07c5 100644 --- a/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad_cosmo/test.yaml +++ b/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad_cosmo/test.yaml @@ -23,3 +23,5 @@ commands: - dscf - "mp2prep -g" - "jobex -level mp2" + +disable: True # disable starting from v7.6 because TM does not support gradients aalculations with symmetries and COSMO anymore diff --git a/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad_cosmo_nosym/TM_v7.5.1/auxbasis b/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad_cosmo_nosym/TM_v7.5.1/auxbasis new file mode 100644 index 0000000..576402b --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad_cosmo_nosym/TM_v7.5.1/auxbasis @@ -0,0 +1,64 @@ +$cbas +* +o def-SV(P) +# o (8s6p5d3f) / [6s5p4d1f] {311111/21111/2111/3} +* + 3 s + 364.91291000 0.58060367000 + 77.387094000 1.4017984900 + 24.301706000 0.34994578000 + 1 s + 8.4369545000 1.0000000000 + 1 s + 3.1527941000 1.0000000000 + 1 s + 1.5775430000 1.0000000000 + 1 s + 0.78178244000 1.0000000000 + 1 s + 0.31652679000 1.0000000000 + 2 p + 56.735948000 1.0602441000 + 14.997217000 1.2003825800 + 1 p + 5.6428116000 1.0000000000 + 1 p + 2.4069219800 1.0000000000 + 1 p + 1.0264059600 1.0000000000 + 1 p + 0.43769977000 1.0000000000 + 2 d + 12.446821000 1.1371699500 + 6.1216917000 0.77017590000 + 1 d + 2.7102949000 1.0000000000 + 1 d + 1.1524061000 1.0000000000 + 1 d + 0.41386174000 1.0000000000 + 3 f + 4.7793539000 0.25251741000 + 2.3204642000 1.7867127800 + 1.0912804000 0.32923623000 +* +h def-SV(P) +# h (4s3p2d) / [3s2p1d] {211/21/2} +* + 2 s + 9.3352160900 0.64609379000 + 1.8611070400 1.3700524100 + 1 s + 0.59512466000 1.0000000000 + 1 s + 0.26448099000 1.0000000000 + 2 p + 2.4524982100 0.13284956000 + 1.3540383000 1.4527621500 + 1 p + 0.59522394000 1.0000000000 + 2 d + 1.5816376600 1.4936739700 + 0.62743960000 -0.10706900000E-01 +* +$end diff --git a/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad_cosmo_nosym/TM_v7.5.1/basis b/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad_cosmo_nosym/TM_v7.5.1/basis new file mode 100644 index 0000000..0f3cddc --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad_cosmo_nosym/TM_v7.5.1/basis @@ -0,0 +1,35 @@ +$basis +* +o def-SV(P) +# o (7s4p1d) / [3s2p1d] {511/31/1} +* + 5 s + 2266.1767785 -0.53431809926E-02 + 340.87010191 -0.39890039230E-01 + 77.363135167 -0.17853911985 + 21.479644940 -0.46427684959 + 6.6589433124 -0.44309745172 + 1 s + 0.80975975668 1.0000000000 + 1 s + 0.25530772234 1.0000000000 + 3 p + 17.721504317 0.43394573193E-01 + 3.8635505440 0.23094120765 + 1.0480920883 0.51375311064 + 1 p + 0.27641544411 1.0000000000 + 1 d + 1.2000000000 1.0000000000 +* +h def-SV(P) +# h (4s) / [2s] {31} +* + 3 s + 13.010701000 0.19682158000E-01 + 1.9622572000 0.13796524000 + 0.44453796000 0.47831935000 + 1 s + 0.12194962000 1.0000000000 +* +$end diff --git a/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad_cosmo_nosym/TM_v7.5.1/control b/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad_cosmo_nosym/TM_v7.5.1/control new file mode 100644 index 0000000..e25aafb --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad_cosmo_nosym/TM_v7.5.1/control @@ -0,0 +1,72 @@ +$title +jobex_mp2_dscf_mpgrad_cosmo_nosym +$symmetry c1 +$redundant file=coord +$user-defined bonds file=coord +$coord file=coord +$intdef file=coord +$optimize + internal on + redundant on + cartesian off + global off + basis off +$atoms +o 1 \ + basis =o def-SV(P) \ + cbas =o def-SV(P) +h 2-3 \ + basis =h def-SV(P) \ + cbas =h def-SV(P) +$basis file=basis +$scfmo file=mos +$closed shells + a 1-5 ( 2 ) +$scfiterlimit 200 +$scfconv 7 +$thize 0.10000000E-04 +$thime 5 +$scfdamp start=0.300 step=0.050 min=0.100 +$scfdump +$scfintunit + unit=30 size=0 file=twoint +$scfdiis +$maxcor 500 MiB per_core +$scforbitalshift automatic=.1 +$drvopt + cartesian on + basis off + global off + hessian on + dipole on + nuclear polarizability +$interconversion off + qconv=1.d-7 + maxiter=25 +$coordinateupdate + dqmax=0.3 + interpolate on + statistics 5 +$forceupdate + ahlrichs numgeo=0 mingeo=3 maxgeo=4 modus= dynamic fail=0.3 + threig=0.005 reseig=0.005 thrbig=3.0 scale=1.00 damping=0.0 +$forceinit on + diag=default +$energy file=energy +$grad file=gradient +$forceapprox file=forceapprox +$denconv 0.10000000E-06 +$freeze + implicit core= 1 virt= 0 +$cbas file=auxbasis +$ricc2 + mp2 + geoopt model=mp2 state=(x) +$rundimensions + natoms=3 + nbf(CAO)=19 + nbf(AO)=18 +$last step define +$cosmo +$cosmo_out = out.cosmo +$end diff --git a/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad_cosmo_nosym/TM_v7.5.1/coord b/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad_cosmo_nosym/TM_v7.5.1/coord new file mode 100644 index 0000000..e757dc5 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad_cosmo_nosym/TM_v7.5.1/coord @@ -0,0 +1,33 @@ +# RCS ################################################################ +# $Id: h2o,v 1.1 1992/04/14 15:03:13 chi Exp $ +# $Log: h2o,v $ +# Revision 1.1 1992/04/14 15:03:13 chi +# Initial revision +# +# RCS ################################################################ +$coord + 0.00000000000000 0.00000000000000 -0.72557892405437 o + 1.41713420892173 0.00000000000000 0.36278946202719 h + -1.41713420892173 0.00000000000000 0.36278946202719 h +$intdef +# definitions of internal coordinates + 1 k 1.0000000000000 stre 2 1 val= 1.78685 + 2 k 1.0000000000000 bend 2 3 1 val= 104.95100 +$redundant + number_of_atoms 3 + degrees_of_freedom 3 + internal_coordinates 3 + frozen_coordinates 0 +# definitions of redundant internals + 1 k 1.0000000000000 stre 1 2 val= 1.78685 + 2 k 1.0000000000000 stre 1 3 val= 1.78685 + 3 k 1.0000000000000 bend 3 2 1 val= 104.95100 + 3 non zero eigenvalues of BmBt + 1 2.360224921 1 0 + 1 + 2 2.257992898 2 0 + 2 + 3 0.796203512 3 0 + 3 +$user-defined bonds +$end diff --git a/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad_cosmo_nosym/auxbasis b/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad_cosmo_nosym/auxbasis new file mode 100644 index 0000000..576402b --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad_cosmo_nosym/auxbasis @@ -0,0 +1,64 @@ +$cbas +* +o def-SV(P) +# o (8s6p5d3f) / [6s5p4d1f] {311111/21111/2111/3} +* + 3 s + 364.91291000 0.58060367000 + 77.387094000 1.4017984900 + 24.301706000 0.34994578000 + 1 s + 8.4369545000 1.0000000000 + 1 s + 3.1527941000 1.0000000000 + 1 s + 1.5775430000 1.0000000000 + 1 s + 0.78178244000 1.0000000000 + 1 s + 0.31652679000 1.0000000000 + 2 p + 56.735948000 1.0602441000 + 14.997217000 1.2003825800 + 1 p + 5.6428116000 1.0000000000 + 1 p + 2.4069219800 1.0000000000 + 1 p + 1.0264059600 1.0000000000 + 1 p + 0.43769977000 1.0000000000 + 2 d + 12.446821000 1.1371699500 + 6.1216917000 0.77017590000 + 1 d + 2.7102949000 1.0000000000 + 1 d + 1.1524061000 1.0000000000 + 1 d + 0.41386174000 1.0000000000 + 3 f + 4.7793539000 0.25251741000 + 2.3204642000 1.7867127800 + 1.0912804000 0.32923623000 +* +h def-SV(P) +# h (4s3p2d) / [3s2p1d] {211/21/2} +* + 2 s + 9.3352160900 0.64609379000 + 1.8611070400 1.3700524100 + 1 s + 0.59512466000 1.0000000000 + 1 s + 0.26448099000 1.0000000000 + 2 p + 2.4524982100 0.13284956000 + 1.3540383000 1.4527621500 + 1 p + 0.59522394000 1.0000000000 + 2 d + 1.5816376600 1.4936739700 + 0.62743960000 -0.10706900000E-01 +* +$end diff --git a/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad_cosmo_nosym/basis b/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad_cosmo_nosym/basis new file mode 100644 index 0000000..0f3cddc --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad_cosmo_nosym/basis @@ -0,0 +1,35 @@ +$basis +* +o def-SV(P) +# o (7s4p1d) / [3s2p1d] {511/31/1} +* + 5 s + 2266.1767785 -0.53431809926E-02 + 340.87010191 -0.39890039230E-01 + 77.363135167 -0.17853911985 + 21.479644940 -0.46427684959 + 6.6589433124 -0.44309745172 + 1 s + 0.80975975668 1.0000000000 + 1 s + 0.25530772234 1.0000000000 + 3 p + 17.721504317 0.43394573193E-01 + 3.8635505440 0.23094120765 + 1.0480920883 0.51375311064 + 1 p + 0.27641544411 1.0000000000 + 1 d + 1.2000000000 1.0000000000 +* +h def-SV(P) +# h (4s) / [2s] {31} +* + 3 s + 13.010701000 0.19682158000E-01 + 1.9622572000 0.13796524000 + 0.44453796000 0.47831935000 + 1 s + 0.12194962000 1.0000000000 +* +$end diff --git a/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad_cosmo_nosym/control b/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad_cosmo_nosym/control new file mode 100644 index 0000000..2513f25 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad_cosmo_nosym/control @@ -0,0 +1,72 @@ +$symmetry c1 +$redundant file=coord +$user-defined bonds file=coord +$coord file=coord +$intdef file=coord +$optimize + internal on + redundant on + cartesian off + global off + basis off +$atoms +o 1 \ + basis =o def-SV(P) \ + cbas =o def-SV(P) +h 2-3 \ + basis =h def-SV(P) \ + cbas =h def-SV(P) +$basis file=basis +$scfmo file=mos +$scfiterlimit 200 +$scfconv 7 +$thize 0.10000000E-04 +$thime 5 +$scfdamp start=0.300 step=0.050 min=0.100 +$scfdump +$scfintunit + unit=30 size=0 file=twoint +$scfdiis +$maxcor 500 MiB per_core +$scforbitalshift automatic=.1 +$drvopt + cartesian on + basis off + global off + hessian on + dipole on + nuclear polarizability +$interconversion off + qconv=1.d-7 + maxiter=25 +$coordinateupdate + dqmax=0.3 + interpolate on + statistics 5 +$forceupdate + ahlrichs numgeo=0 mingeo=3 maxgeo=4 modus= dynamic fail=0.3 + threig=0.005 reseig=0.005 thrbig=3.0 scale=1.00 damping=0.0 +$forceinit on + diag=default +$energy file=energy +$grad file=gradient +$forceapprox file=forceapprox +$denconv 0.10000000E-06 +$freeze + implicit core= 1 virt= 0 +$cbas file=auxbasis +$ricc2 + mp2 + geoopt model=mp2 state=(x) +$rundimensions + natoms=3 + nbf(CAO)=19 + nbf(AO)=18 +$last step define +$cosmo +$cosmo_out = out.cosmo +$title +jobex_mp2_dscf_mpgrad_cosmo_nosym +$closed shells + a 1-5 ( 2 ) +$end diff --git a/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad_cosmo_nosym/coord b/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad_cosmo_nosym/coord new file mode 100644 index 0000000..e757dc5 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad_cosmo_nosym/coord @@ -0,0 +1,33 @@ +# RCS ################################################################ +# $Id: h2o,v 1.1 1992/04/14 15:03:13 chi Exp $ +# $Log: h2o,v $ +# Revision 1.1 1992/04/14 15:03:13 chi +# Initial revision +# +# RCS ################################################################ +$coord + 0.00000000000000 0.00000000000000 -0.72557892405437 o + 1.41713420892173 0.00000000000000 0.36278946202719 h + -1.41713420892173 0.00000000000000 0.36278946202719 h +$intdef +# definitions of internal coordinates + 1 k 1.0000000000000 stre 2 1 val= 1.78685 + 2 k 1.0000000000000 bend 2 3 1 val= 104.95100 +$redundant + number_of_atoms 3 + degrees_of_freedom 3 + internal_coordinates 3 + frozen_coordinates 0 +# definitions of redundant internals + 1 k 1.0000000000000 stre 1 2 val= 1.78685 + 2 k 1.0000000000000 stre 1 3 val= 1.78685 + 3 k 1.0000000000000 bend 3 2 1 val= 104.95100 + 3 non zero eigenvalues of BmBt + 1 2.360224921 1 0 + 1 + 2 2.257992898 2 0 + 2 + 3 0.796203512 3 0 + 3 +$user-defined bonds +$end diff --git a/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad_cosmo_nosym/test.yaml b/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad_cosmo_nosym/test.yaml new file mode 100644 index 0000000..83e7d19 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_dscf_mpgrad_cosmo_nosym/test.yaml @@ -0,0 +1,25 @@ +# Define parameters are taken +# - from a template +# - from the explicit parameters +# - from a template and explicit parameters overriding those in the template +define: + template: "dscf" + parameters: + desy: False + ired: True + method: mp2 + title: jobex_mp2_dscf_mpgrad_cosmo_nosym + use_cosmo: True + +# Data groups to add to or change in the control file after running define +#datagroups: +# add: +# disp3: 'bj' +# change: +# scfconv: '8' + +# List of TM commands to be run +commands: + - dscf + - "mp2prep -g" + - "jobex -level mp2" diff --git a/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_ridft_rimp2/TM_v7.5.1/auxbasis b/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_ridft_rimp2/TM_v7.5.1/auxbasis new file mode 100644 index 0000000..7ccdbe6 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_ridft_rimp2/TM_v7.5.1/auxbasis @@ -0,0 +1,146 @@ +$cbas +* +o def-SV(P) +# o (8s6p5d3f) / [6s5p4d1f] {311111/21111/2111/3} +* + 3 s + 364.91291000 0.58060367000 + 77.387094000 1.4017984900 + 24.301706000 0.34994578000 + 1 s + 8.4369545000 1.0000000000 + 1 s + 3.1527941000 1.0000000000 + 1 s + 1.5775430000 1.0000000000 + 1 s + 0.78178244000 1.0000000000 + 1 s + 0.31652679000 1.0000000000 + 2 p + 56.735948000 1.0602441000 + 14.997217000 1.2003825800 + 1 p + 5.6428116000 1.0000000000 + 1 p + 2.4069219800 1.0000000000 + 1 p + 1.0264059600 1.0000000000 + 1 p + 0.43769977000 1.0000000000 + 2 d + 12.446821000 1.1371699500 + 6.1216917000 0.77017590000 + 1 d + 2.7102949000 1.0000000000 + 1 d + 1.1524061000 1.0000000000 + 1 d + 0.41386174000 1.0000000000 + 3 f + 4.7793539000 0.25251741000 + 2.3204642000 1.7867127800 + 1.0912804000 0.32923623000 +* +h def-SV(P) +# h (4s3p2d) / [3s2p1d] {211/21/2} +* + 2 s + 9.3352160900 0.64609379000 + 1.8611070400 1.3700524100 + 1 s + 0.59512466000 1.0000000000 + 1 s + 0.26448099000 1.0000000000 + 2 p + 2.4524982100 0.13284956000 + 1.3540383000 1.4527621500 + 1 p + 0.59522394000 1.0000000000 + 2 d + 1.5816376600 1.4936739700 + 0.62743960000 -0.10706900000E-01 +* +$jkbas +* +o def-SV(P) +# o (14s10p6d2f1g) / [10s8p4d2f1g] {5111111111/31111111/3111/11/1} +* + 5 s + 625.28298110 0.18479249890 + 253.93274180 0.19224605780 + 109.04929550 0.59372043000 + 49.423005600 0.60593463970 + 23.580521100 0.45741933600 + 1 s + 11.807759100 1.0000000000 + 1 s + 6.1827814000 1.0000000000 + 1 s + 3.3709061000 1.0000000000 + 1 s + 1.9042805000 1.0000000000 + 1 s + 1.1085447000 1.0000000000 + 1 s + 0.66098860000 1.0000000000 + 1 s + 0.40108140000 1.0000000000 + 1 s + 0.24597690000 1.0000000000 + 1 s + 0.15139390000 1.0000000000 + 3 p + 77.687483800 0.39010104350 + 22.415388400 0.83793482660 + 9.8906463000 0.38168888150 + 1 p + 5.4848863000 1.0000000000 + 1 p + 2.9732983000 1.0000000000 + 1 p + 1.4735260000 1.0000000000 + 1 p + 0.73603410000 1.0000000000 + 1 p + 0.36974140000 1.0000000000 + 1 p + 0.18637210000 1.0000000000 + 1 p + 0.94990600000E-01 1.0000000000 + 3 d + 37.707107400 0.77860015600E-01 + 14.775254300 0.31355206270 + 5.8470900000 0.94637356360 + 1 d + 2.3304365000 1.0000000000 + 1 d + 0.93282670000 1.0000000000 + 1 d + 0.37392850000 1.0000000000 + 1 f + 3.0293422000 0.76154791140 + 1 f + 0.92484900000 0.64810861640 + 1 g + 1.6934809000 1.0000000000 +* +h def-SV(P) +# h (4s2p2d) / [2s2p2d] {31/11/11} +* + 3 s + 22.068343000 0.53033986000E-01 + 4.3905712000 0.39465220220 + 1.0540787000 0.91729877120 + 1 s + 0.27178740000 1.0000000000 + 1 p + 1.8529979000 1.0000000000 + 1 p + 0.38810340000 1.0000000000 + 1 d + 2.5579933000 1.0000000000 + 1 d + 0.32926490000 1.0000000000 +* +$end diff --git a/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_ridft_rimp2/TM_v7.5.1/basis b/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_ridft_rimp2/TM_v7.5.1/basis new file mode 100644 index 0000000..0f3cddc --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_ridft_rimp2/TM_v7.5.1/basis @@ -0,0 +1,35 @@ +$basis +* +o def-SV(P) +# o (7s4p1d) / [3s2p1d] {511/31/1} +* + 5 s + 2266.1767785 -0.53431809926E-02 + 340.87010191 -0.39890039230E-01 + 77.363135167 -0.17853911985 + 21.479644940 -0.46427684959 + 6.6589433124 -0.44309745172 + 1 s + 0.80975975668 1.0000000000 + 1 s + 0.25530772234 1.0000000000 + 3 p + 17.721504317 0.43394573193E-01 + 3.8635505440 0.23094120765 + 1.0480920883 0.51375311064 + 1 p + 0.27641544411 1.0000000000 + 1 d + 1.2000000000 1.0000000000 +* +h def-SV(P) +# h (4s) / [2s] {31} +* + 3 s + 13.010701000 0.19682158000E-01 + 1.9622572000 0.13796524000 + 0.44453796000 0.47831935000 + 1 s + 0.12194962000 1.0000000000 +* +$end diff --git a/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_ridft_rimp2/TM_v7.5.1/control b/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_ridft_rimp2/TM_v7.5.1/control new file mode 100644 index 0000000..a6444cf --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_ridft_rimp2/TM_v7.5.1/control @@ -0,0 +1,75 @@ +$title +jobex_ridft_rimp2 +$symmetry c1 n +$redundant file=coord +$user-defined bonds file=coord +$coord file=coord +$optimize + internal off + redundant off + cartesian on + global off + basis off +$atoms +o 1 \ + basis =o def-SV(P) \ + cbas =o def-SV(P) \ + jkbas =o def-SV(P) +h 2-3 \ + basis =h def-SV(P) \ + cbas =h def-SV(P) \ + jkbas =h def-SV(P) +$basis file=basis +$scfmo file=mos +$closed shells + a 1-5 ( 2 ) +$scfiterlimit 200 +$scfconv 7 +$thize 0.10000000E-04 +$thime 5 +$scfdamp start=0.300 step=0.050 min=0.100 +$scfdump +$scfintunit + unit=30 size=0 file=twoint +$scfdiis +$maxcor 500 MiB per_core +$scforbitalshift automatic=.1 +$drvopt + cartesian on + basis off + global off + hessian on + dipole on + nuclear polarizability +$interconversion off + qconv=1.d-7 + maxiter=25 +$coordinateupdate + dqmax=0.3 + interpolate on + statistics 5 +$forceupdate + ahlrichs numgeo=0 mingeo=3 maxgeo=4 modus= dynamic fail=0.3 + threig=0.005 reseig=0.005 thrbig=3.0 scale=1.00 damping=0.0 +$forceinit on + diag=default +$energy file=energy +$grad file=gradient +$forceapprox file=forceapprox +$denconv 0.10000000E-06 +$freeze + implicit core= 1 virt= 0 +$cbas file=auxbasis +$ricc2 + mp2 + geoopt model=mp2 state=(x) +$ricore 500 +$rij +$jkbas file=auxbasis +$rik +$rundimensions + natoms=3 + nbf(CAO)=19 + nbf(AO)=18 +$last step define +$end diff --git a/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_ridft_rimp2/TM_v7.5.1/coord b/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_ridft_rimp2/TM_v7.5.1/coord new file mode 100644 index 0000000..e5b5b31 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_ridft_rimp2/TM_v7.5.1/coord @@ -0,0 +1,26 @@ +# RCS ################################################################ +# $Id: h2o,v 1.1 1992/04/14 15:03:13 chi Exp $ +# $Log: h2o,v $ +# Revision 1.1 1992/04/14 15:03:13 chi +# Initial revision +# +# RCS ################################################################ +$coord + 0.00000000000000 0.00000000000000 -0.72557892405437 o + 1.41713420892173 0.00000000000000 0.36278946202719 h + -1.41713420892173 0.00000000000000 0.36278946202719 h +$redundant + number_of_atoms 3 + degrees_of_freedom 2 + internal_coordinates 2 + frozen_coordinates 0 +# definitions of redundant internals + 1 k 1.0000000000000 stre 1 2 val= 1.78685 + 2 k 1.0000000000000 bend 3 2 1 val= 104.95100 + 2 non zero eigenvalues of BmBt + 1 2.360224921 1 0 + 1 + 2 0.796203512 2 0 + 2 +$user-defined bonds +$end diff --git a/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_ridft_rimp2/control b/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_ridft_rimp2/control index a6444cf..0152931 100644 --- a/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_ridft_rimp2/control +++ b/turbomoleio/testfiles/outputs/generation/jobex/h2o_mp2_ridft_rimp2/control @@ -1,5 +1,3 @@ -$title -jobex_ridft_rimp2 $symmetry c1 n $redundant file=coord $user-defined bonds file=coord @@ -21,8 +19,6 @@ h 2-3 \ jkbas =h def-SV(P) $basis file=basis $scfmo file=mos -$closed shells - a 1-5 ( 2 ) $scfiterlimit 200 $scfconv 7 $thize 0.10000000E-04 @@ -72,4 +68,8 @@ $rundimensions nbf(CAO)=19 nbf(AO)=18 $last step define +$title +jobex_ridft_rimp2 +$closed shells + a 1-5 ( 2 ) $end diff --git a/turbomoleio/testfiles/outputs/generation/jobex/no3_ridft/TM_v7.5.1/auxbasis b/turbomoleio/testfiles/outputs/generation/jobex/no3_ridft/TM_v7.5.1/auxbasis new file mode 100644 index 0000000..205773f --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/jobex/no3_ridft/TM_v7.5.1/auxbasis @@ -0,0 +1,67 @@ +$jbas +* +n def-SV(P) +# n (8s3p3d1f) / [6s3p3d1f] {311111/111/111/1} +* + 3 s + 680.54253000 0.50257896200 + 196.75621400 1.3247898800 + 61.270793000 3.4140611100 + 1 s + 20.364463000 2.6503410200 + 1 s + 7.1424770000 -0.30130261700E-02 + 1 s + 2.6080260000 0.12287191200 + 1 s + 0.97637300000 0.81803157200 + 1 s + 0.36863300000 0.19429463900 + 1 p + 0.47073919407 0.67405747100E-01 + 1 p + 1.1297740658 -0.22505550600E-01 + 1 p + 2.8300840347 0.35545572100E-01 + 1 d + 5.8329865000 0.41604040300E-01 + 1 d + 1.7326865000 0.11059698000E-01 + 1 d + 0.54524250000 0.48407961900E-01 + 1 f + 1.8264800000 1.0000000000 +* +o def-SV(P) +# o (8s3p3d1f) / [6s3p3d1f] {311111/111/111/1} +* + 3 s + 896.10357000 0.59760749700 + 269.72523200 1.5358077900 + 85.615077000 4.0470231300 + 1 s + 28.445035000 3.4984208300 + 1 s + 9.8069810000 -0.24387498700E-01 + 1 s + 3.4747220000 0.32147717800 + 1 s + 1.2519210000 1.1625987000 + 1 s + 0.45361300000 0.25268306900 + 1 p + 0.61470886295 -0.85578439300E-01 + 1 p + 1.4753012711 0.41799959400E-01 + 1 p + 3.6956296840 -0.58551078600E-01 + 1 d + 7.6526720000 0.88298462700E-01 + 1 d + 2.2178680000 0.11926244900 + 1 d + 0.68233700000 0.44873891700E-01 + 1 f + 2.1917808219 1.0000000000 +* +$end diff --git a/turbomoleio/testfiles/outputs/generation/jobex/no3_ridft/TM_v7.5.1/basis b/turbomoleio/testfiles/outputs/generation/jobex/no3_ridft/TM_v7.5.1/basis new file mode 100644 index 0000000..a35e036 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/jobex/no3_ridft/TM_v7.5.1/basis @@ -0,0 +1,47 @@ +$basis +* +n def-SV(P) +# n (7s4p1d) / [3s2p1d] {511/31/1} +* + 5 s + 1712.8415853 -0.53934125305E-02 + 257.64812677 -0.40221581118E-01 + 58.458245853 -0.17931144990 + 16.198367905 -0.46376317823 + 5.0052600809 -0.44171422662 + 1 s + 0.58731856571 1.0000000000 + 1 s + 0.18764592253 1.0000000000 + 3 p + 13.571470233 -0.40072398852E-01 + 2.9257372874 -0.21807045028 + 0.79927750754 -0.51294466049 + 1 p + 0.21954348034 1.0000000000 + 1 d + 1.0000000000 1.0000000000 +* +o def-SV(P) +# o (7s4p1d) / [3s2p1d] {511/31/1} +* + 5 s + 2266.1767785 -0.53431809926E-02 + 340.87010191 -0.39890039230E-01 + 77.363135167 -0.17853911985 + 21.479644940 -0.46427684959 + 6.6589433124 -0.44309745172 + 1 s + 0.80975975668 1.0000000000 + 1 s + 0.25530772234 1.0000000000 + 3 p + 17.721504317 0.43394573193E-01 + 3.8635505440 0.23094120765 + 1.0480920883 0.51375311064 + 1 p + 0.27641544411 1.0000000000 + 1 d + 1.2000000000 1.0000000000 +* +$end diff --git a/turbomoleio/testfiles/outputs/generation/jobex/no3_ridft/TM_v7.5.1/control b/turbomoleio/testfiles/outputs/generation/jobex/no3_ridft/TM_v7.5.1/control new file mode 100644 index 0000000..9d27520 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/jobex/no3_ridft/TM_v7.5.1/control @@ -0,0 +1,80 @@ +$title +ridft +$symmetry d3h +$redundant file=coord +$user-defined bonds file=coord +$coord file=coord +$intdef file=coord +$optimize + internal on + redundant off + cartesian off + global off + basis off +$atoms +n 1 \ + basis =n def-SV(P) \ + jbas =n def-SV(P) +o 2-4 \ + basis =o def-SV(P) \ + jbas =o def-SV(P) +$basis file=basis +$uhfmo_alpha file=alpha +$uhfmo_beta file=beta +$uhf +$alpha shells + a1' 1-4 ( 1 ) + a2' 1 ( 1 ) + e' 1-4 ( 1 ) + a2" 1 ( 1 ) + e" 1 ( 1 ) +$beta shells + a1' 1-4 ( 1 ) + e' 1-4 ( 1 ) + a2" 1 ( 1 ) + e" 1 ( 1 ) +$scfiterlimit 200 +$thize 0.10000000E-04 +$thime 5 +$scfdamp start=1.000 step=0.050 min=0.100 +$scfdump +$scfintunit + unit=30 size=0 file=twoint +$scfdiis +$maxcor 500 MiB per_core +$drvopt + cartesian on + basis off + global off + hessian on + dipole on + nuclear polarizability +$interconversion off + qconv=1.d-7 + maxiter=25 +$coordinateupdate + dqmax=0.3 + interpolate on + statistics 5 +$forceupdate + ahlrichs numgeo=0 mingeo=3 maxgeo=4 modus= dynamic fail=0.3 + threig=0.005 reseig=0.005 thrbig=3.0 scale=1.00 damping=0.0 +$forceinit on + diag=default +$energy file=energy +$grad file=gradient +$forceapprox file=forceapprox +$dft + functional b-p + gridsize m3 +$scfconv 7 +$scforbitalshift closedshell=.05 +$ricore 500 +$rij +$jbas file=auxbasis +$rundimensions + natoms=4 + nbf(CAO)=60 + nbf(AO)=56 +$last step define +$end diff --git a/turbomoleio/testfiles/outputs/generation/jobex/no3_ridft/TM_v7.5.1/coord b/turbomoleio/testfiles/outputs/generation/jobex/no3_ridft/TM_v7.5.1/coord new file mode 100644 index 0000000..a505947 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/jobex/no3_ridft/TM_v7.5.1/coord @@ -0,0 +1,27 @@ +# RCS ################################################################ +# $Id: no3,v 1.1 1992/04/14 15:03:22 chi Exp $ +# $Log: no3,v $ +# Revision 1.1 1992/04/14 15:03:22 chi +# Initial revision +# +# RCS ################################################################ +$coord + 0.00000000000000 0.00000000000000 0.00000000000000 n + -1.15103063747470 1.99364354517457 0.00000000000000 o + -1.15103063747470 -1.99364354517457 0.00000000000000 o + 2.30206127494940 0.00000000000000 0.00000000000000 o +$intdef +# definitions of internal coordinates + 1 k 1.0000000000000 stre 1 2 val= 2.30206 +$redundant + number_of_atoms 4 + degrees_of_freedom 1 + internal_coordinates 1 + frozen_coordinates 0 +# definitions of redundant internals + 1 k 1.0000000000000 stre 1 2 val= 2.30206 + 1 non zero eigenvalues of BmBt + 1 1.000000000 1 0 + 1 +$user-defined bonds +$end diff --git a/turbomoleio/testfiles/outputs/generation/jobex/no3_ridft/control b/turbomoleio/testfiles/outputs/generation/jobex/no3_ridft/control index 9d27520..e497748 100644 --- a/turbomoleio/testfiles/outputs/generation/jobex/no3_ridft/control +++ b/turbomoleio/testfiles/outputs/generation/jobex/no3_ridft/control @@ -1,5 +1,3 @@ -$title -ridft $symmetry d3h $redundant file=coord $user-defined bonds file=coord @@ -22,17 +20,6 @@ $basis file=basis $uhfmo_alpha file=alpha $uhfmo_beta file=beta $uhf -$alpha shells - a1' 1-4 ( 1 ) - a2' 1 ( 1 ) - e' 1-4 ( 1 ) - a2" 1 ( 1 ) - e" 1 ( 1 ) -$beta shells - a1' 1-4 ( 1 ) - e' 1-4 ( 1 ) - a2" 1 ( 1 ) - e" 1 ( 1 ) $scfiterlimit 200 $thize 0.10000000E-04 $thime 5 @@ -77,4 +64,17 @@ $rundimensions nbf(CAO)=60 nbf(AO)=56 $last step define +$title +ridft +$alpha shells + a1' 1-4 ( 1 ) + a2' 1 ( 1 ) + e' 1-4 ( 1 ) + a2" 1 ( 1 ) + e" 1 ( 1 ) +$beta shells + a1' 1-4 ( 1 ) + e' 1-4 ( 1 ) + a2" 1 ( 1 ) + e" 1 ( 1 ) $end diff --git a/turbomoleio/testfiles/outputs/generation/jobex/no3_ridft/coord b/turbomoleio/testfiles/outputs/generation/jobex/no3_ridft/coord index a505947..495c8bd 100644 --- a/turbomoleio/testfiles/outputs/generation/jobex/no3_ridft/coord +++ b/turbomoleio/testfiles/outputs/generation/jobex/no3_ridft/coord @@ -6,7 +6,7 @@ # # RCS ################################################################ $coord - 0.00000000000000 0.00000000000000 0.00000000000000 n + -0.00000000000000 0.00000000000000 0.00000000000000 n -1.15103063747470 1.99364354517457 0.00000000000000 o -1.15103063747470 -1.99364354517457 0.00000000000000 o 2.30206127494940 0.00000000000000 0.00000000000000 o diff --git a/turbomoleio/testfiles/outputs/generation/mpgrad/h2o_std_mp2/TM_v7.5.1/auxbasis b/turbomoleio/testfiles/outputs/generation/mpgrad/h2o_std_mp2/TM_v7.5.1/auxbasis new file mode 100644 index 0000000..576402b --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/mpgrad/h2o_std_mp2/TM_v7.5.1/auxbasis @@ -0,0 +1,64 @@ +$cbas +* +o def-SV(P) +# o (8s6p5d3f) / [6s5p4d1f] {311111/21111/2111/3} +* + 3 s + 364.91291000 0.58060367000 + 77.387094000 1.4017984900 + 24.301706000 0.34994578000 + 1 s + 8.4369545000 1.0000000000 + 1 s + 3.1527941000 1.0000000000 + 1 s + 1.5775430000 1.0000000000 + 1 s + 0.78178244000 1.0000000000 + 1 s + 0.31652679000 1.0000000000 + 2 p + 56.735948000 1.0602441000 + 14.997217000 1.2003825800 + 1 p + 5.6428116000 1.0000000000 + 1 p + 2.4069219800 1.0000000000 + 1 p + 1.0264059600 1.0000000000 + 1 p + 0.43769977000 1.0000000000 + 2 d + 12.446821000 1.1371699500 + 6.1216917000 0.77017590000 + 1 d + 2.7102949000 1.0000000000 + 1 d + 1.1524061000 1.0000000000 + 1 d + 0.41386174000 1.0000000000 + 3 f + 4.7793539000 0.25251741000 + 2.3204642000 1.7867127800 + 1.0912804000 0.32923623000 +* +h def-SV(P) +# h (4s3p2d) / [3s2p1d] {211/21/2} +* + 2 s + 9.3352160900 0.64609379000 + 1.8611070400 1.3700524100 + 1 s + 0.59512466000 1.0000000000 + 1 s + 0.26448099000 1.0000000000 + 2 p + 2.4524982100 0.13284956000 + 1.3540383000 1.4527621500 + 1 p + 0.59522394000 1.0000000000 + 2 d + 1.5816376600 1.4936739700 + 0.62743960000 -0.10706900000E-01 +* +$end diff --git a/turbomoleio/testfiles/outputs/generation/mpgrad/h2o_std_mp2/TM_v7.5.1/basis b/turbomoleio/testfiles/outputs/generation/mpgrad/h2o_std_mp2/TM_v7.5.1/basis new file mode 100644 index 0000000..0f3cddc --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/mpgrad/h2o_std_mp2/TM_v7.5.1/basis @@ -0,0 +1,35 @@ +$basis +* +o def-SV(P) +# o (7s4p1d) / [3s2p1d] {511/31/1} +* + 5 s + 2266.1767785 -0.53431809926E-02 + 340.87010191 -0.39890039230E-01 + 77.363135167 -0.17853911985 + 21.479644940 -0.46427684959 + 6.6589433124 -0.44309745172 + 1 s + 0.80975975668 1.0000000000 + 1 s + 0.25530772234 1.0000000000 + 3 p + 17.721504317 0.43394573193E-01 + 3.8635505440 0.23094120765 + 1.0480920883 0.51375311064 + 1 p + 0.27641544411 1.0000000000 + 1 d + 1.2000000000 1.0000000000 +* +h def-SV(P) +# h (4s) / [2s] {31} +* + 3 s + 13.010701000 0.19682158000E-01 + 1.9622572000 0.13796524000 + 0.44453796000 0.47831935000 + 1 s + 0.12194962000 1.0000000000 +* +$end diff --git a/turbomoleio/testfiles/outputs/generation/mpgrad/h2o_std_mp2/TM_v7.5.1/control b/turbomoleio/testfiles/outputs/generation/mpgrad/h2o_std_mp2/TM_v7.5.1/control new file mode 100644 index 0000000..67f454d --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/mpgrad/h2o_std_mp2/TM_v7.5.1/control @@ -0,0 +1,69 @@ +$title +dscf_mpgrad +$symmetry c1 +$redundant file=coord +$user-defined bonds file=coord +$coord file=coord +$optimize + internal off + redundant off + cartesian on + global off + basis off +$atoms +o 1 \ + basis =o def-SV(P) \ + cbas =o def-SV(P) +h 2-3 \ + basis =h def-SV(P) \ + cbas =h def-SV(P) +$basis file=basis +$scfmo file=mos +$closed shells + a 1-5 ( 2 ) +$scfiterlimit 200 +$scfconv 7 +$thize 0.10000000E-04 +$thime 5 +$scfdamp start=0.300 step=0.050 min=0.100 +$scfdump +$scfintunit + unit=30 size=0 file=twoint +$scfdiis +$maxcor 500 MiB per_core +$scforbitalshift automatic=.1 +$drvopt + cartesian on + basis off + global off + hessian on + dipole on + nuclear polarizability +$interconversion off + qconv=1.d-7 + maxiter=25 +$coordinateupdate + dqmax=0.3 + interpolate on + statistics 5 +$forceupdate + ahlrichs numgeo=0 mingeo=3 maxgeo=4 modus= dynamic fail=0.3 + threig=0.005 reseig=0.005 thrbig=3.0 scale=1.00 damping=0.0 +$forceinit on + diag=default +$energy file=energy +$grad file=gradient +$forceapprox file=forceapprox +$denconv 0.10000000E-06 +$freeze + implicit core= 1 virt= 0 +$cbas file=auxbasis +$ricc2 + mp2 + geoopt model=mp2 state=(x) +$rundimensions + natoms=3 + nbf(CAO)=19 + nbf(AO)=18 +$last step define +$end diff --git a/turbomoleio/testfiles/outputs/generation/mpgrad/h2o_std_mp2/TM_v7.5.1/coord b/turbomoleio/testfiles/outputs/generation/mpgrad/h2o_std_mp2/TM_v7.5.1/coord new file mode 100644 index 0000000..e5b5b31 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/mpgrad/h2o_std_mp2/TM_v7.5.1/coord @@ -0,0 +1,26 @@ +# RCS ################################################################ +# $Id: h2o,v 1.1 1992/04/14 15:03:13 chi Exp $ +# $Log: h2o,v $ +# Revision 1.1 1992/04/14 15:03:13 chi +# Initial revision +# +# RCS ################################################################ +$coord + 0.00000000000000 0.00000000000000 -0.72557892405437 o + 1.41713420892173 0.00000000000000 0.36278946202719 h + -1.41713420892173 0.00000000000000 0.36278946202719 h +$redundant + number_of_atoms 3 + degrees_of_freedom 2 + internal_coordinates 2 + frozen_coordinates 0 +# definitions of redundant internals + 1 k 1.0000000000000 stre 1 2 val= 1.78685 + 2 k 1.0000000000000 bend 3 2 1 val= 104.95100 + 2 non zero eigenvalues of BmBt + 1 2.360224921 1 0 + 1 + 2 0.796203512 2 0 + 2 +$user-defined bonds +$end diff --git a/turbomoleio/testfiles/outputs/generation/mpgrad/h2o_std_mp2/control b/turbomoleio/testfiles/outputs/generation/mpgrad/h2o_std_mp2/control index 67f454d..ef9f569 100644 --- a/turbomoleio/testfiles/outputs/generation/mpgrad/h2o_std_mp2/control +++ b/turbomoleio/testfiles/outputs/generation/mpgrad/h2o_std_mp2/control @@ -1,5 +1,3 @@ -$title -dscf_mpgrad $symmetry c1 $redundant file=coord $user-defined bonds file=coord @@ -19,8 +17,6 @@ h 2-3 \ cbas =h def-SV(P) $basis file=basis $scfmo file=mos -$closed shells - a 1-5 ( 2 ) $scfiterlimit 200 $scfconv 7 $thize 0.10000000E-04 @@ -66,4 +62,8 @@ $rundimensions nbf(CAO)=19 nbf(AO)=18 $last step define +$title +dscf_mpgrad +$closed shells + a 1-5 ( 2 ) $end diff --git a/turbomoleio/testfiles/outputs/generation/mpgrad/h2o_std_mp2_gradient/TM_v7.5.1/auxbasis b/turbomoleio/testfiles/outputs/generation/mpgrad/h2o_std_mp2_gradient/TM_v7.5.1/auxbasis new file mode 100644 index 0000000..576402b --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/mpgrad/h2o_std_mp2_gradient/TM_v7.5.1/auxbasis @@ -0,0 +1,64 @@ +$cbas +* +o def-SV(P) +# o (8s6p5d3f) / [6s5p4d1f] {311111/21111/2111/3} +* + 3 s + 364.91291000 0.58060367000 + 77.387094000 1.4017984900 + 24.301706000 0.34994578000 + 1 s + 8.4369545000 1.0000000000 + 1 s + 3.1527941000 1.0000000000 + 1 s + 1.5775430000 1.0000000000 + 1 s + 0.78178244000 1.0000000000 + 1 s + 0.31652679000 1.0000000000 + 2 p + 56.735948000 1.0602441000 + 14.997217000 1.2003825800 + 1 p + 5.6428116000 1.0000000000 + 1 p + 2.4069219800 1.0000000000 + 1 p + 1.0264059600 1.0000000000 + 1 p + 0.43769977000 1.0000000000 + 2 d + 12.446821000 1.1371699500 + 6.1216917000 0.77017590000 + 1 d + 2.7102949000 1.0000000000 + 1 d + 1.1524061000 1.0000000000 + 1 d + 0.41386174000 1.0000000000 + 3 f + 4.7793539000 0.25251741000 + 2.3204642000 1.7867127800 + 1.0912804000 0.32923623000 +* +h def-SV(P) +# h (4s3p2d) / [3s2p1d] {211/21/2} +* + 2 s + 9.3352160900 0.64609379000 + 1.8611070400 1.3700524100 + 1 s + 0.59512466000 1.0000000000 + 1 s + 0.26448099000 1.0000000000 + 2 p + 2.4524982100 0.13284956000 + 1.3540383000 1.4527621500 + 1 p + 0.59522394000 1.0000000000 + 2 d + 1.5816376600 1.4936739700 + 0.62743960000 -0.10706900000E-01 +* +$end diff --git a/turbomoleio/testfiles/outputs/generation/mpgrad/h2o_std_mp2_gradient/TM_v7.5.1/basis b/turbomoleio/testfiles/outputs/generation/mpgrad/h2o_std_mp2_gradient/TM_v7.5.1/basis new file mode 100644 index 0000000..0f3cddc --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/mpgrad/h2o_std_mp2_gradient/TM_v7.5.1/basis @@ -0,0 +1,35 @@ +$basis +* +o def-SV(P) +# o (7s4p1d) / [3s2p1d] {511/31/1} +* + 5 s + 2266.1767785 -0.53431809926E-02 + 340.87010191 -0.39890039230E-01 + 77.363135167 -0.17853911985 + 21.479644940 -0.46427684959 + 6.6589433124 -0.44309745172 + 1 s + 0.80975975668 1.0000000000 + 1 s + 0.25530772234 1.0000000000 + 3 p + 17.721504317 0.43394573193E-01 + 3.8635505440 0.23094120765 + 1.0480920883 0.51375311064 + 1 p + 0.27641544411 1.0000000000 + 1 d + 1.2000000000 1.0000000000 +* +h def-SV(P) +# h (4s) / [2s] {31} +* + 3 s + 13.010701000 0.19682158000E-01 + 1.9622572000 0.13796524000 + 0.44453796000 0.47831935000 + 1 s + 0.12194962000 1.0000000000 +* +$end diff --git a/turbomoleio/testfiles/outputs/generation/mpgrad/h2o_std_mp2_gradient/TM_v7.5.1/control b/turbomoleio/testfiles/outputs/generation/mpgrad/h2o_std_mp2_gradient/TM_v7.5.1/control new file mode 100644 index 0000000..67f454d --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/mpgrad/h2o_std_mp2_gradient/TM_v7.5.1/control @@ -0,0 +1,69 @@ +$title +dscf_mpgrad +$symmetry c1 +$redundant file=coord +$user-defined bonds file=coord +$coord file=coord +$optimize + internal off + redundant off + cartesian on + global off + basis off +$atoms +o 1 \ + basis =o def-SV(P) \ + cbas =o def-SV(P) +h 2-3 \ + basis =h def-SV(P) \ + cbas =h def-SV(P) +$basis file=basis +$scfmo file=mos +$closed shells + a 1-5 ( 2 ) +$scfiterlimit 200 +$scfconv 7 +$thize 0.10000000E-04 +$thime 5 +$scfdamp start=0.300 step=0.050 min=0.100 +$scfdump +$scfintunit + unit=30 size=0 file=twoint +$scfdiis +$maxcor 500 MiB per_core +$scforbitalshift automatic=.1 +$drvopt + cartesian on + basis off + global off + hessian on + dipole on + nuclear polarizability +$interconversion off + qconv=1.d-7 + maxiter=25 +$coordinateupdate + dqmax=0.3 + interpolate on + statistics 5 +$forceupdate + ahlrichs numgeo=0 mingeo=3 maxgeo=4 modus= dynamic fail=0.3 + threig=0.005 reseig=0.005 thrbig=3.0 scale=1.00 damping=0.0 +$forceinit on + diag=default +$energy file=energy +$grad file=gradient +$forceapprox file=forceapprox +$denconv 0.10000000E-06 +$freeze + implicit core= 1 virt= 0 +$cbas file=auxbasis +$ricc2 + mp2 + geoopt model=mp2 state=(x) +$rundimensions + natoms=3 + nbf(CAO)=19 + nbf(AO)=18 +$last step define +$end diff --git a/turbomoleio/testfiles/outputs/generation/mpgrad/h2o_std_mp2_gradient/TM_v7.5.1/coord b/turbomoleio/testfiles/outputs/generation/mpgrad/h2o_std_mp2_gradient/TM_v7.5.1/coord new file mode 100644 index 0000000..e5b5b31 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/mpgrad/h2o_std_mp2_gradient/TM_v7.5.1/coord @@ -0,0 +1,26 @@ +# RCS ################################################################ +# $Id: h2o,v 1.1 1992/04/14 15:03:13 chi Exp $ +# $Log: h2o,v $ +# Revision 1.1 1992/04/14 15:03:13 chi +# Initial revision +# +# RCS ################################################################ +$coord + 0.00000000000000 0.00000000000000 -0.72557892405437 o + 1.41713420892173 0.00000000000000 0.36278946202719 h + -1.41713420892173 0.00000000000000 0.36278946202719 h +$redundant + number_of_atoms 3 + degrees_of_freedom 2 + internal_coordinates 2 + frozen_coordinates 0 +# definitions of redundant internals + 1 k 1.0000000000000 stre 1 2 val= 1.78685 + 2 k 1.0000000000000 bend 3 2 1 val= 104.95100 + 2 non zero eigenvalues of BmBt + 1 2.360224921 1 0 + 1 + 2 0.796203512 2 0 + 2 +$user-defined bonds +$end diff --git a/turbomoleio/testfiles/outputs/generation/mpgrad/h2o_std_mp2_gradient/control b/turbomoleio/testfiles/outputs/generation/mpgrad/h2o_std_mp2_gradient/control index 67f454d..ef9f569 100644 --- a/turbomoleio/testfiles/outputs/generation/mpgrad/h2o_std_mp2_gradient/control +++ b/turbomoleio/testfiles/outputs/generation/mpgrad/h2o_std_mp2_gradient/control @@ -1,5 +1,3 @@ -$title -dscf_mpgrad $symmetry c1 $redundant file=coord $user-defined bonds file=coord @@ -19,8 +17,6 @@ h 2-3 \ cbas =h def-SV(P) $basis file=basis $scfmo file=mos -$closed shells - a 1-5 ( 2 ) $scfiterlimit 200 $scfconv 7 $thize 0.10000000E-04 @@ -66,4 +62,8 @@ $rundimensions nbf(CAO)=19 nbf(AO)=18 $last step define +$title +dscf_mpgrad +$closed shells + a 1-5 ( 2 ) $end diff --git a/turbomoleio/testfiles/outputs/generation/rdgrad/h2o_dftd3-bj/TM_v7.5.1/auxbasis b/turbomoleio/testfiles/outputs/generation/rdgrad/h2o_dftd3-bj/TM_v7.5.1/auxbasis new file mode 100644 index 0000000..95e3afe --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/rdgrad/h2o_dftd3-bj/TM_v7.5.1/auxbasis @@ -0,0 +1,48 @@ +$jbas +* +o def-SV(P) +# o (8s3p3d1f) / [6s3p3d1f] {311111/111/111/1} +* + 3 s + 896.10357000 0.59760749700 + 269.72523200 1.5358077900 + 85.615077000 4.0470231300 + 1 s + 28.445035000 3.4984208300 + 1 s + 9.8069810000 -0.24387498700E-01 + 1 s + 3.4747220000 0.32147717800 + 1 s + 1.2519210000 1.1625987000 + 1 s + 0.45361300000 0.25268306900 + 1 p + 0.61470886295 -0.85578439300E-01 + 1 p + 1.4753012711 0.41799959400E-01 + 1 p + 3.6956296840 -0.58551078600E-01 + 1 d + 7.6526720000 0.88298462700E-01 + 1 d + 2.2178680000 0.11926244900 + 1 d + 0.68233700000 0.44873891700E-01 + 1 f + 2.1917808219 1.0000000000 +* +h def-SV(P) +# h (4s2p) / [2s1p] {31/2} +* + 3 s + 9.3081300000 0.34466183000E-01 + 2.3067180000 0.12253379600 + 0.75201200000 0.18250021100 + 1 s + 0.27397800000 0.22150547900E-01 + 2 p + 2.0327040000 0.29513659100E-01 + 0.79025200000 0.32755872800E-01 +* +$end diff --git a/turbomoleio/testfiles/outputs/generation/rdgrad/h2o_dftd3-bj/TM_v7.5.1/basis b/turbomoleio/testfiles/outputs/generation/rdgrad/h2o_dftd3-bj/TM_v7.5.1/basis new file mode 100644 index 0000000..0f3cddc --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/rdgrad/h2o_dftd3-bj/TM_v7.5.1/basis @@ -0,0 +1,35 @@ +$basis +* +o def-SV(P) +# o (7s4p1d) / [3s2p1d] {511/31/1} +* + 5 s + 2266.1767785 -0.53431809926E-02 + 340.87010191 -0.39890039230E-01 + 77.363135167 -0.17853911985 + 21.479644940 -0.46427684959 + 6.6589433124 -0.44309745172 + 1 s + 0.80975975668 1.0000000000 + 1 s + 0.25530772234 1.0000000000 + 3 p + 17.721504317 0.43394573193E-01 + 3.8635505440 0.23094120765 + 1.0480920883 0.51375311064 + 1 p + 0.27641544411 1.0000000000 + 1 d + 1.2000000000 1.0000000000 +* +h def-SV(P) +# h (4s) / [2s] {31} +* + 3 s + 13.010701000 0.19682158000E-01 + 1.9622572000 0.13796524000 + 0.44453796000 0.47831935000 + 1 s + 0.12194962000 1.0000000000 +* +$end diff --git a/turbomoleio/testfiles/outputs/generation/rdgrad/h2o_dftd3-bj/TM_v7.5.1/control b/turbomoleio/testfiles/outputs/generation/rdgrad/h2o_dftd3-bj/TM_v7.5.1/control new file mode 100644 index 0000000..8de8aaf --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/rdgrad/h2o_dftd3-bj/TM_v7.5.1/control @@ -0,0 +1,69 @@ +$title +ridft +$symmetry c1 +$redundant file=coord +$user-defined bonds file=coord +$coord file=coord +$optimize + internal off + redundant off + cartesian on + global off + basis off +$atoms +o 1 \ + basis =o def-SV(P) \ + jbas =o def-SV(P) +h 2-3 \ + basis =h def-SV(P) \ + jbas =h def-SV(P) +$basis file=basis +$scfmo file=mos +$closed shells + a 1-5 ( 2 ) +$scfiterlimit 200 +$thize 0.10000000E-04 +$thime 5 +$scfdamp start=0.300 step=0.050 min=0.100 +$scfdump +$scfintunit + unit=30 size=0 file=twoint +$scfdiis +$maxcor 500 MiB per_core +$scforbitalshift automatic=.1 +$drvopt + cartesian on + basis off + global off + hessian on + dipole on + nuclear polarizability +$interconversion off + qconv=1.d-7 + maxiter=25 +$coordinateupdate + dqmax=0.3 + interpolate on + statistics 5 +$forceupdate + ahlrichs numgeo=0 mingeo=3 maxgeo=4 modus= dynamic fail=0.3 + threig=0.005 reseig=0.005 thrbig=3.0 scale=1.00 damping=0.0 +$forceinit on + diag=default +$energy file=energy +$grad file=gradient +$forceapprox file=forceapprox +$dft + functional b-p + gridsize m3 +$ricore 500 +$rij +$jbas file=auxbasis +$rundimensions + natoms=3 + nbf(CAO)=19 + nbf(AO)=18 +$last step define +$disp3 bj +$scfconv 8 +$end diff --git a/turbomoleio/testfiles/outputs/generation/rdgrad/h2o_dftd3-bj/TM_v7.5.1/coord b/turbomoleio/testfiles/outputs/generation/rdgrad/h2o_dftd3-bj/TM_v7.5.1/coord new file mode 100644 index 0000000..e5b5b31 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/rdgrad/h2o_dftd3-bj/TM_v7.5.1/coord @@ -0,0 +1,26 @@ +# RCS ################################################################ +# $Id: h2o,v 1.1 1992/04/14 15:03:13 chi Exp $ +# $Log: h2o,v $ +# Revision 1.1 1992/04/14 15:03:13 chi +# Initial revision +# +# RCS ################################################################ +$coord + 0.00000000000000 0.00000000000000 -0.72557892405437 o + 1.41713420892173 0.00000000000000 0.36278946202719 h + -1.41713420892173 0.00000000000000 0.36278946202719 h +$redundant + number_of_atoms 3 + degrees_of_freedom 2 + internal_coordinates 2 + frozen_coordinates 0 +# definitions of redundant internals + 1 k 1.0000000000000 stre 1 2 val= 1.78685 + 2 k 1.0000000000000 bend 3 2 1 val= 104.95100 + 2 non zero eigenvalues of BmBt + 1 2.360224921 1 0 + 1 + 2 0.796203512 2 0 + 2 +$user-defined bonds +$end diff --git a/turbomoleio/testfiles/outputs/generation/rdgrad/h2o_dftd3-bj/control b/turbomoleio/testfiles/outputs/generation/rdgrad/h2o_dftd3-bj/control index 8de8aaf..95b5cc3 100644 --- a/turbomoleio/testfiles/outputs/generation/rdgrad/h2o_dftd3-bj/control +++ b/turbomoleio/testfiles/outputs/generation/rdgrad/h2o_dftd3-bj/control @@ -1,5 +1,3 @@ -$title -ridft $symmetry c1 $redundant file=coord $user-defined bonds file=coord @@ -19,8 +17,6 @@ h 2-3 \ jbas =h def-SV(P) $basis file=basis $scfmo file=mos -$closed shells - a 1-5 ( 2 ) $scfiterlimit 200 $thize 0.10000000E-04 $thime 5 @@ -66,4 +62,8 @@ $rundimensions $last step define $disp3 bj $scfconv 8 +$title +ridft +$closed shells + a 1-5 ( 2 ) $end diff --git a/turbomoleio/testfiles/outputs/generation/relax/h2o_cartesian/TM_v7.5.1/basis b/turbomoleio/testfiles/outputs/generation/relax/h2o_cartesian/TM_v7.5.1/basis new file mode 100644 index 0000000..0f3cddc --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/relax/h2o_cartesian/TM_v7.5.1/basis @@ -0,0 +1,35 @@ +$basis +* +o def-SV(P) +# o (7s4p1d) / [3s2p1d] {511/31/1} +* + 5 s + 2266.1767785 -0.53431809926E-02 + 340.87010191 -0.39890039230E-01 + 77.363135167 -0.17853911985 + 21.479644940 -0.46427684959 + 6.6589433124 -0.44309745172 + 1 s + 0.80975975668 1.0000000000 + 1 s + 0.25530772234 1.0000000000 + 3 p + 17.721504317 0.43394573193E-01 + 3.8635505440 0.23094120765 + 1.0480920883 0.51375311064 + 1 p + 0.27641544411 1.0000000000 + 1 d + 1.2000000000 1.0000000000 +* +h def-SV(P) +# h (4s) / [2s] {31} +* + 3 s + 13.010701000 0.19682158000E-01 + 1.9622572000 0.13796524000 + 0.44453796000 0.47831935000 + 1 s + 0.12194962000 1.0000000000 +* +$end diff --git a/turbomoleio/testfiles/outputs/generation/relax/h2o_cartesian/TM_v7.5.1/control b/turbomoleio/testfiles/outputs/generation/relax/h2o_cartesian/TM_v7.5.1/control new file mode 100644 index 0000000..ca9d021 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/relax/h2o_cartesian/TM_v7.5.1/control @@ -0,0 +1,67 @@ +$title +dscf +$symmetry c1 +$redundant file=coord +$user-defined bonds file=coord +$coord file=coord +$optimize + internal off + redundant off + cartesian on + global off + basis off +$atoms +o 1 \ + basis =o def-SV(P) +h 2-3 \ + basis =h def-SV(P) +$basis file=basis +$uhfmo_alpha file=alpha +$uhfmo_beta file=beta +$uhf +$alpha shells + a 1-5 ( 1 ) +$beta shells + a 1-4 ( 1 ) +$scfiterlimit 200 +$thize 0.10000000E-04 +$thime 5 +$scfdamp start=1.000 step=0.050 min=0.100 +$scfdump +$scfintunit + unit=30 size=0 file=twoint +$scfdiis +$maxcor 500 MiB per_core +$drvopt + cartesian on + basis off + global off + hessian on + dipole on + nuclear polarizability +$interconversion off + qconv=1.d-7 + maxiter=25 +$coordinateupdate + dqmax=0.3 + interpolate on + statistics 5 +$forceupdate + ahlrichs numgeo=0 mingeo=3 maxgeo=4 modus= dynamic fail=0.3 + threig=0.005 reseig=0.005 thrbig=3.0 scale=1.00 damping=0.0 +$forceinit on + diag=default +$energy file=energy +$grad file=gradient +$forceapprox file=forceapprox +$dft + functional b-p + gridsize m3 +$scfconv 7 +$scforbitalshift closedshell=.05 +$rundimensions + natoms=3 + nbf(CAO)=19 + nbf(AO)=18 +$last step define +$end diff --git a/turbomoleio/testfiles/outputs/generation/relax/h2o_cartesian/TM_v7.5.1/coord b/turbomoleio/testfiles/outputs/generation/relax/h2o_cartesian/TM_v7.5.1/coord new file mode 100644 index 0000000..e5b5b31 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/relax/h2o_cartesian/TM_v7.5.1/coord @@ -0,0 +1,26 @@ +# RCS ################################################################ +# $Id: h2o,v 1.1 1992/04/14 15:03:13 chi Exp $ +# $Log: h2o,v $ +# Revision 1.1 1992/04/14 15:03:13 chi +# Initial revision +# +# RCS ################################################################ +$coord + 0.00000000000000 0.00000000000000 -0.72557892405437 o + 1.41713420892173 0.00000000000000 0.36278946202719 h + -1.41713420892173 0.00000000000000 0.36278946202719 h +$redundant + number_of_atoms 3 + degrees_of_freedom 2 + internal_coordinates 2 + frozen_coordinates 0 +# definitions of redundant internals + 1 k 1.0000000000000 stre 1 2 val= 1.78685 + 2 k 1.0000000000000 bend 3 2 1 val= 104.95100 + 2 non zero eigenvalues of BmBt + 1 2.360224921 1 0 + 1 + 2 0.796203512 2 0 + 2 +$user-defined bonds +$end diff --git a/turbomoleio/testfiles/outputs/generation/relax/h2o_cartesian/control b/turbomoleio/testfiles/outputs/generation/relax/h2o_cartesian/control index ca9d021..0a8909c 100644 --- a/turbomoleio/testfiles/outputs/generation/relax/h2o_cartesian/control +++ b/turbomoleio/testfiles/outputs/generation/relax/h2o_cartesian/control @@ -1,5 +1,3 @@ -$title -dscf $symmetry c1 $redundant file=coord $user-defined bonds file=coord @@ -19,10 +17,6 @@ $basis file=basis $uhfmo_alpha file=alpha $uhfmo_beta file=beta $uhf -$alpha shells - a 1-5 ( 1 ) -$beta shells - a 1-4 ( 1 ) $scfiterlimit 200 $thize 0.10000000E-04 $thime 5 @@ -64,4 +58,10 @@ $rundimensions nbf(CAO)=19 nbf(AO)=18 $last step define +$title +dscf +$alpha shells + a 1-5 ( 1 ) +$beta shells + a 1-4 ( 1 ) $end diff --git a/turbomoleio/testfiles/outputs/generation/relax/h2o_internal/TM_v7.5.1/basis b/turbomoleio/testfiles/outputs/generation/relax/h2o_internal/TM_v7.5.1/basis new file mode 100644 index 0000000..0f3cddc --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/relax/h2o_internal/TM_v7.5.1/basis @@ -0,0 +1,35 @@ +$basis +* +o def-SV(P) +# o (7s4p1d) / [3s2p1d] {511/31/1} +* + 5 s + 2266.1767785 -0.53431809926E-02 + 340.87010191 -0.39890039230E-01 + 77.363135167 -0.17853911985 + 21.479644940 -0.46427684959 + 6.6589433124 -0.44309745172 + 1 s + 0.80975975668 1.0000000000 + 1 s + 0.25530772234 1.0000000000 + 3 p + 17.721504317 0.43394573193E-01 + 3.8635505440 0.23094120765 + 1.0480920883 0.51375311064 + 1 p + 0.27641544411 1.0000000000 + 1 d + 1.2000000000 1.0000000000 +* +h def-SV(P) +# h (4s) / [2s] {31} +* + 3 s + 13.010701000 0.19682158000E-01 + 1.9622572000 0.13796524000 + 0.44453796000 0.47831935000 + 1 s + 0.12194962000 1.0000000000 +* +$end diff --git a/turbomoleio/testfiles/outputs/generation/relax/h2o_internal/TM_v7.5.1/control b/turbomoleio/testfiles/outputs/generation/relax/h2o_internal/TM_v7.5.1/control new file mode 100644 index 0000000..765c675 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/relax/h2o_internal/TM_v7.5.1/control @@ -0,0 +1,65 @@ +$title +dscf +$symmetry c2v +$redundant file=coord +$user-defined bonds file=coord +$coord file=coord +$optimize + internal on + redundant on + cartesian off + global off + basis off +$atoms +o 1 \ + basis =o def-SV(P) +h 2-3 \ + basis =h def-SV(P) +$basis file=basis +$scfmo file=mos +$closed shells + a1 1-3 ( 2 ) + b1 1 ( 2 ) + b2 1 ( 2 ) +$scfiterlimit 200 +$thize 0.10000000E-04 +$thime 5 +$scfdamp start=0.300 step=0.050 min=0.100 +$scfdump +$scfintunit + unit=30 size=0 file=twoint +$scfdiis +$maxcor 500 MiB per_core +$scforbitalshift automatic=.1 +$drvopt + cartesian on + basis off + global off + hessian on + dipole on + nuclear polarizability +$interconversion off + qconv=1.d-7 + maxiter=25 +$coordinateupdate + dqmax=0.3 + interpolate on + statistics 5 +$forceupdate + ahlrichs numgeo=0 mingeo=3 maxgeo=4 modus= dynamic fail=0.3 + threig=0.005 reseig=0.005 thrbig=3.0 scale=1.00 damping=0.0 +$forceinit on + diag=default +$energy file=energy +$grad file=gradient +$forceapprox file=forceapprox +$dft + functional b-p + gridsize m3 +$scfconv 7 +$rundimensions + natoms=3 + nbf(CAO)=19 + nbf(AO)=18 +$last step define +$end diff --git a/turbomoleio/testfiles/outputs/generation/relax/h2o_internal/TM_v7.5.1/coord b/turbomoleio/testfiles/outputs/generation/relax/h2o_internal/TM_v7.5.1/coord new file mode 100644 index 0000000..e5b5b31 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/relax/h2o_internal/TM_v7.5.1/coord @@ -0,0 +1,26 @@ +# RCS ################################################################ +# $Id: h2o,v 1.1 1992/04/14 15:03:13 chi Exp $ +# $Log: h2o,v $ +# Revision 1.1 1992/04/14 15:03:13 chi +# Initial revision +# +# RCS ################################################################ +$coord + 0.00000000000000 0.00000000000000 -0.72557892405437 o + 1.41713420892173 0.00000000000000 0.36278946202719 h + -1.41713420892173 0.00000000000000 0.36278946202719 h +$redundant + number_of_atoms 3 + degrees_of_freedom 2 + internal_coordinates 2 + frozen_coordinates 0 +# definitions of redundant internals + 1 k 1.0000000000000 stre 1 2 val= 1.78685 + 2 k 1.0000000000000 bend 3 2 1 val= 104.95100 + 2 non zero eigenvalues of BmBt + 1 2.360224921 1 0 + 1 + 2 0.796203512 2 0 + 2 +$user-defined bonds +$end diff --git a/turbomoleio/testfiles/outputs/generation/relax/h2o_internal/control b/turbomoleio/testfiles/outputs/generation/relax/h2o_internal/control index 765c675..e293ad7 100644 --- a/turbomoleio/testfiles/outputs/generation/relax/h2o_internal/control +++ b/turbomoleio/testfiles/outputs/generation/relax/h2o_internal/control @@ -1,5 +1,3 @@ -$title -dscf $symmetry c2v $redundant file=coord $user-defined bonds file=coord @@ -17,10 +15,6 @@ h 2-3 \ basis =h def-SV(P) $basis file=basis $scfmo file=mos -$closed shells - a1 1-3 ( 2 ) - b1 1 ( 2 ) - b2 1 ( 2 ) $scfiterlimit 200 $thize 0.10000000E-04 $thime 5 @@ -62,4 +56,10 @@ $rundimensions nbf(CAO)=19 nbf(AO)=18 $last step define +$title +dscf +$closed shells + a1 1-3 ( 2 ) + b1 1 ( 2 ) + b2 1 ( 2 ) $end diff --git a/turbomoleio/testfiles/outputs/generation/ricc2/h2o_std_mp2/TM_v7.5.1/auxbasis b/turbomoleio/testfiles/outputs/generation/ricc2/h2o_std_mp2/TM_v7.5.1/auxbasis new file mode 100644 index 0000000..7ccdbe6 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/ricc2/h2o_std_mp2/TM_v7.5.1/auxbasis @@ -0,0 +1,146 @@ +$cbas +* +o def-SV(P) +# o (8s6p5d3f) / [6s5p4d1f] {311111/21111/2111/3} +* + 3 s + 364.91291000 0.58060367000 + 77.387094000 1.4017984900 + 24.301706000 0.34994578000 + 1 s + 8.4369545000 1.0000000000 + 1 s + 3.1527941000 1.0000000000 + 1 s + 1.5775430000 1.0000000000 + 1 s + 0.78178244000 1.0000000000 + 1 s + 0.31652679000 1.0000000000 + 2 p + 56.735948000 1.0602441000 + 14.997217000 1.2003825800 + 1 p + 5.6428116000 1.0000000000 + 1 p + 2.4069219800 1.0000000000 + 1 p + 1.0264059600 1.0000000000 + 1 p + 0.43769977000 1.0000000000 + 2 d + 12.446821000 1.1371699500 + 6.1216917000 0.77017590000 + 1 d + 2.7102949000 1.0000000000 + 1 d + 1.1524061000 1.0000000000 + 1 d + 0.41386174000 1.0000000000 + 3 f + 4.7793539000 0.25251741000 + 2.3204642000 1.7867127800 + 1.0912804000 0.32923623000 +* +h def-SV(P) +# h (4s3p2d) / [3s2p1d] {211/21/2} +* + 2 s + 9.3352160900 0.64609379000 + 1.8611070400 1.3700524100 + 1 s + 0.59512466000 1.0000000000 + 1 s + 0.26448099000 1.0000000000 + 2 p + 2.4524982100 0.13284956000 + 1.3540383000 1.4527621500 + 1 p + 0.59522394000 1.0000000000 + 2 d + 1.5816376600 1.4936739700 + 0.62743960000 -0.10706900000E-01 +* +$jkbas +* +o def-SV(P) +# o (14s10p6d2f1g) / [10s8p4d2f1g] {5111111111/31111111/3111/11/1} +* + 5 s + 625.28298110 0.18479249890 + 253.93274180 0.19224605780 + 109.04929550 0.59372043000 + 49.423005600 0.60593463970 + 23.580521100 0.45741933600 + 1 s + 11.807759100 1.0000000000 + 1 s + 6.1827814000 1.0000000000 + 1 s + 3.3709061000 1.0000000000 + 1 s + 1.9042805000 1.0000000000 + 1 s + 1.1085447000 1.0000000000 + 1 s + 0.66098860000 1.0000000000 + 1 s + 0.40108140000 1.0000000000 + 1 s + 0.24597690000 1.0000000000 + 1 s + 0.15139390000 1.0000000000 + 3 p + 77.687483800 0.39010104350 + 22.415388400 0.83793482660 + 9.8906463000 0.38168888150 + 1 p + 5.4848863000 1.0000000000 + 1 p + 2.9732983000 1.0000000000 + 1 p + 1.4735260000 1.0000000000 + 1 p + 0.73603410000 1.0000000000 + 1 p + 0.36974140000 1.0000000000 + 1 p + 0.18637210000 1.0000000000 + 1 p + 0.94990600000E-01 1.0000000000 + 3 d + 37.707107400 0.77860015600E-01 + 14.775254300 0.31355206270 + 5.8470900000 0.94637356360 + 1 d + 2.3304365000 1.0000000000 + 1 d + 0.93282670000 1.0000000000 + 1 d + 0.37392850000 1.0000000000 + 1 f + 3.0293422000 0.76154791140 + 1 f + 0.92484900000 0.64810861640 + 1 g + 1.6934809000 1.0000000000 +* +h def-SV(P) +# h (4s2p2d) / [2s2p2d] {31/11/11} +* + 3 s + 22.068343000 0.53033986000E-01 + 4.3905712000 0.39465220220 + 1.0540787000 0.91729877120 + 1 s + 0.27178740000 1.0000000000 + 1 p + 1.8529979000 1.0000000000 + 1 p + 0.38810340000 1.0000000000 + 1 d + 2.5579933000 1.0000000000 + 1 d + 0.32926490000 1.0000000000 +* +$end diff --git a/turbomoleio/testfiles/outputs/generation/ricc2/h2o_std_mp2/TM_v7.5.1/basis b/turbomoleio/testfiles/outputs/generation/ricc2/h2o_std_mp2/TM_v7.5.1/basis new file mode 100644 index 0000000..0f3cddc --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/ricc2/h2o_std_mp2/TM_v7.5.1/basis @@ -0,0 +1,35 @@ +$basis +* +o def-SV(P) +# o (7s4p1d) / [3s2p1d] {511/31/1} +* + 5 s + 2266.1767785 -0.53431809926E-02 + 340.87010191 -0.39890039230E-01 + 77.363135167 -0.17853911985 + 21.479644940 -0.46427684959 + 6.6589433124 -0.44309745172 + 1 s + 0.80975975668 1.0000000000 + 1 s + 0.25530772234 1.0000000000 + 3 p + 17.721504317 0.43394573193E-01 + 3.8635505440 0.23094120765 + 1.0480920883 0.51375311064 + 1 p + 0.27641544411 1.0000000000 + 1 d + 1.2000000000 1.0000000000 +* +h def-SV(P) +# h (4s) / [2s] {31} +* + 3 s + 13.010701000 0.19682158000E-01 + 1.9622572000 0.13796524000 + 0.44453796000 0.47831935000 + 1 s + 0.12194962000 1.0000000000 +* +$end diff --git a/turbomoleio/testfiles/outputs/generation/ricc2/h2o_std_mp2/TM_v7.5.1/control b/turbomoleio/testfiles/outputs/generation/ricc2/h2o_std_mp2/TM_v7.5.1/control new file mode 100644 index 0000000..828d4ab --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/ricc2/h2o_std_mp2/TM_v7.5.1/control @@ -0,0 +1,75 @@ +$title +ridft_rimp2 +$symmetry c1 n +$redundant file=coord +$user-defined bonds file=coord +$coord file=coord +$optimize + internal off + redundant off + cartesian on + global off + basis off +$atoms +o 1 \ + basis =o def-SV(P) \ + cbas =o def-SV(P) \ + jkbas =o def-SV(P) +h 2-3 \ + basis =h def-SV(P) \ + cbas =h def-SV(P) \ + jkbas =h def-SV(P) +$basis file=basis +$scfmo file=mos +$closed shells + a 1-5 ( 2 ) +$scfiterlimit 200 +$scfconv 7 +$thize 0.10000000E-04 +$thime 5 +$scfdamp start=0.300 step=0.050 min=0.100 +$scfdump +$scfintunit + unit=30 size=0 file=twoint +$scfdiis +$maxcor 500 MiB per_core +$scforbitalshift automatic=.1 +$drvopt + cartesian on + basis off + global off + hessian on + dipole on + nuclear polarizability +$interconversion off + qconv=1.d-7 + maxiter=25 +$coordinateupdate + dqmax=0.3 + interpolate on + statistics 5 +$forceupdate + ahlrichs numgeo=0 mingeo=3 maxgeo=4 modus= dynamic fail=0.3 + threig=0.005 reseig=0.005 thrbig=3.0 scale=1.00 damping=0.0 +$forceinit on + diag=default +$energy file=energy +$grad file=gradient +$forceapprox file=forceapprox +$denconv 0.10000000E-06 +$freeze + implicit core= 1 virt= 0 +$cbas file=auxbasis +$ricc2 + mp2 + geoopt model=mp2 state=(x) +$ricore 500 +$rij +$jkbas file=auxbasis +$rik +$rundimensions + natoms=3 + nbf(CAO)=19 + nbf(AO)=18 +$last step define +$end diff --git a/turbomoleio/testfiles/outputs/generation/ricc2/h2o_std_mp2/TM_v7.5.1/coord b/turbomoleio/testfiles/outputs/generation/ricc2/h2o_std_mp2/TM_v7.5.1/coord new file mode 100644 index 0000000..e5b5b31 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/ricc2/h2o_std_mp2/TM_v7.5.1/coord @@ -0,0 +1,26 @@ +# RCS ################################################################ +# $Id: h2o,v 1.1 1992/04/14 15:03:13 chi Exp $ +# $Log: h2o,v $ +# Revision 1.1 1992/04/14 15:03:13 chi +# Initial revision +# +# RCS ################################################################ +$coord + 0.00000000000000 0.00000000000000 -0.72557892405437 o + 1.41713420892173 0.00000000000000 0.36278946202719 h + -1.41713420892173 0.00000000000000 0.36278946202719 h +$redundant + number_of_atoms 3 + degrees_of_freedom 2 + internal_coordinates 2 + frozen_coordinates 0 +# definitions of redundant internals + 1 k 1.0000000000000 stre 1 2 val= 1.78685 + 2 k 1.0000000000000 bend 3 2 1 val= 104.95100 + 2 non zero eigenvalues of BmBt + 1 2.360224921 1 0 + 1 + 2 0.796203512 2 0 + 2 +$user-defined bonds +$end diff --git a/turbomoleio/testfiles/outputs/generation/ricc2/h2o_std_mp2/control b/turbomoleio/testfiles/outputs/generation/ricc2/h2o_std_mp2/control index 828d4ab..563d175 100644 --- a/turbomoleio/testfiles/outputs/generation/ricc2/h2o_std_mp2/control +++ b/turbomoleio/testfiles/outputs/generation/ricc2/h2o_std_mp2/control @@ -1,5 +1,3 @@ -$title -ridft_rimp2 $symmetry c1 n $redundant file=coord $user-defined bonds file=coord @@ -21,8 +19,6 @@ h 2-3 \ jkbas =h def-SV(P) $basis file=basis $scfmo file=mos -$closed shells - a 1-5 ( 2 ) $scfiterlimit 200 $scfconv 7 $thize 0.10000000E-04 @@ -72,4 +68,8 @@ $rundimensions nbf(CAO)=19 nbf(AO)=18 $last step define +$title +ridft_rimp2 +$closed shells + a 1-5 ( 2 ) $end diff --git a/turbomoleio/testfiles/outputs/generation/ridft/b28_many_irreps/TM_v7.5.1/auxbasis b/turbomoleio/testfiles/outputs/generation/ridft/b28_many_irreps/TM_v7.5.1/auxbasis new file mode 100644 index 0000000..c8b8971 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/ridft/b28_many_irreps/TM_v7.5.1/auxbasis @@ -0,0 +1,35 @@ +$jbas +* +b def-SV(P) +# b (8s3p3d1f) / [6s3p3d1f] {311111/111/111/1} +* + 3 s + 284.82680000 0.36195832900 + 84.010592000 0.89362082300 + 26.364919000 2.0986505600 + 1 s + 8.7312190000 1.3449459800 + 1 s + 3.0213380000 -0.38086140000E-01 + 1 s + 1.0801440000 0.34137440200E-01 + 1 s + 0.39399000000 0.29943604400 + 1 s + 0.14468900000 0.37616928100E-01 + 1 p + 1.2229760000 -0.17675020900E-01 + 1 p + 0.49485300000 -0.77234583400E-02 + 1 p + 0.20879300000 -0.43175216200E-01 + 1 d + 2.4018980000 0.34346756000E-01 + 1 d + 0.76449700000 0.56173626900E-01 + 1 d + 0.25749400000 0.21633955200E-01 + 1 f + 0.91306700000 0.27924652600E-01 +* +$end diff --git a/turbomoleio/testfiles/outputs/generation/ridft/b28_many_irreps/TM_v7.5.1/basis b/turbomoleio/testfiles/outputs/generation/ridft/b28_many_irreps/TM_v7.5.1/basis new file mode 100644 index 0000000..d9396c4 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/ridft/b28_many_irreps/TM_v7.5.1/basis @@ -0,0 +1,25 @@ +$basis +* +b def-SV(P) +# b (7s4p1d) / [3s2p1d] {511/31/1} +* + 5 s + 839.31830086 -0.55929201074E-02 + 126.26464843 -0.41565520771E-01 + 28.620600763 -0.18299816983 + 7.8793722710 -0.46540391866 + 2.4088857172 -0.44173884791 + 1 s + 0.25105109036 1.0000000000 + 1 s + 0.83648866069E-01 1.0000000000 + 3 p + 6.0332223619 -0.35603672456E-01 + 1.2499157866 -0.19895775769 + 0.33871676350 -0.50850202618 + 1 p + 0.96415632351E-01 1.0000000000 + 1 d + 0.50000000000 1.0000000000 +* +$end diff --git a/turbomoleio/testfiles/outputs/generation/ridft/b28_many_irreps/TM_v7.5.1/control b/turbomoleio/testfiles/outputs/generation/ridft/b28_many_irreps/TM_v7.5.1/control new file mode 100644 index 0000000..92a09dd --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/ridft/b28_many_irreps/TM_v7.5.1/control @@ -0,0 +1,96 @@ +$title +ridft +$symmetry d14d +$user-defined bonds file=coord +$coord file=coord +$optimize + internal off + redundant off + cartesian on + global off + basis off +$atoms +b 1-28 \ + basis =b def-SV(P) \ + jbas =b def-SV(P) +$basis file=basis +$uhfmo_alpha file=alpha +$uhfmo_beta file=beta +$uhf +$alpha shells + a1 1-4 ( 1 ) + b2 1-3 ( 1 ) + e1 1-4 ( 1 ) + e2 1-4 ( 1 ) + e3 1-4 ( 1 ) + e4 1-2 ( 1 ) + e5 1-2 ( 1 ) + e6 1-2 ( 1 ) + e7 1-2 ( 1 ) + e8 1-2 ( 1 ) + e9 1-2 ( 1 ) + e10 1-2 ( 1 ) + e11 1-2 ( 1 ) + e12 1-2 ( 1 ) + e13 1-2 ( 1 ) +$beta shells + a1 1-4 ( 1 ) + b2 1-3 ( 1 ) + e1 1-4 ( 1 ) + e2 1-4 ( 1 ) + e3 1-3 ( 1 ) + e4 1-2 ( 1 ) + e5 1-2 ( 1 ) + e6 1-2 ( 1 ) + e7 1-2 ( 1 ) + e8 1-2 ( 1 ) + e9 1-2 ( 1 ) + e10 1-2 ( 1 ) + e11 1-2 ( 1 ) + e12 1-2 ( 1 ) + e13 1-2 ( 1 ) +$scfiterlimit 200 +$thize 0.10000000E-04 +$thime 5 +$scfdamp start=1.000 step=0.050 min=0.100 +$scfdump +$scfintunit + unit=30 size=0 file=twoint +$scfdiis +$maxcor 500 MiB per_core +$drvopt + cartesian on + basis off + global off + hessian on + dipole on + nuclear polarizability +$interconversion off + qconv=1.d-7 + maxiter=25 +$coordinateupdate + dqmax=0.3 + interpolate on + statistics 5 +$forceupdate + ahlrichs numgeo=0 mingeo=3 maxgeo=4 modus= dynamic fail=0.3 + threig=0.005 reseig=0.005 thrbig=3.0 scale=1.00 damping=0.0 +$forceinit on + diag=default +$energy file=energy +$grad file=gradient +$forceapprox file=forceapprox +$dft + functional b-p + gridsize m3 +$scfconv 7 +$scforbitalshift closedshell=.05 +$ricore 500 +$rij +$jbas file=auxbasis +$rundimensions + natoms=28 + nbf(CAO)=420 + nbf(AO)=392 +$last step define +$end diff --git a/turbomoleio/testfiles/outputs/generation/ridft/b28_many_irreps/TM_v7.5.1/coord b/turbomoleio/testfiles/outputs/generation/ridft/b28_many_irreps/TM_v7.5.1/coord new file mode 100644 index 0000000..7b7c0fc --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/ridft/b28_many_irreps/TM_v7.5.1/coord @@ -0,0 +1,31 @@ +$coord + -0.77134581084605 -6.84588341734827 1.44112692588123 b + 2.27535893272272 -6.50260223688276 1.44112692588123 b + 4.87140093421973 -4.87140093421973 1.44112692588123 b + 6.50260223688276 -2.27535893272272 1.44112692588123 b + 6.84588341734827 0.77134581084605 1.44112692588123 b + 5.83325342775767 3.66527605664119 1.44112692588123 b + 3.66527605664119 5.83325342775767 1.44112692588123 b + 0.77134581084605 6.84588341734827 1.44112692588123 b + -2.27535893272272 6.50260223688276 1.44112692588123 b + -4.87140093421973 4.87140093421973 1.44112692588123 b + -6.50260223688276 2.27535893272272 1.44112692588123 b + -6.84588341734827 -0.77134581084605 1.44112692588123 b + -5.83325342775767 -3.66527605664119 1.44112692588123 b + -3.66527605664119 -5.83325342775767 1.44112692588123 b + -0.77134581084605 6.84588341734827 -1.44112692588123 b + -3.66527605664119 5.83325342775767 -1.44112692588123 b + -5.83325342775767 3.66527605664119 -1.44112692588123 b + -6.84588341734827 0.77134581084605 -1.44112692588123 b + -6.50260223688276 -2.27535893272272 -1.44112692588123 b + -4.87140093421973 -4.87140093421973 -1.44112692588123 b + -2.27535893272272 -6.50260223688276 -1.44112692588123 b + 0.77134581084605 -6.84588341734827 -1.44112692588123 b + 3.66527605664119 -5.83325342775767 -1.44112692588123 b + 5.83325342775767 -3.66527605664119 -1.44112692588123 b + 6.84588341734827 -0.77134581084605 -1.44112692588123 b + 6.50260223688276 2.27535893272272 -1.44112692588123 b + 4.87140093421973 4.87140093421973 -1.44112692588123 b + 2.27535893272272 6.50260223688276 -1.44112692588123 b +$user-defined bonds +$end diff --git a/turbomoleio/testfiles/outputs/generation/ridft/b28_many_irreps/control b/turbomoleio/testfiles/outputs/generation/ridft/b28_many_irreps/control index 92a09dd..1ac069e 100644 --- a/turbomoleio/testfiles/outputs/generation/ridft/b28_many_irreps/control +++ b/turbomoleio/testfiles/outputs/generation/ridft/b28_many_irreps/control @@ -1,5 +1,3 @@ -$title -ridft $symmetry d14d $user-defined bonds file=coord $coord file=coord @@ -17,38 +15,6 @@ $basis file=basis $uhfmo_alpha file=alpha $uhfmo_beta file=beta $uhf -$alpha shells - a1 1-4 ( 1 ) - b2 1-3 ( 1 ) - e1 1-4 ( 1 ) - e2 1-4 ( 1 ) - e3 1-4 ( 1 ) - e4 1-2 ( 1 ) - e5 1-2 ( 1 ) - e6 1-2 ( 1 ) - e7 1-2 ( 1 ) - e8 1-2 ( 1 ) - e9 1-2 ( 1 ) - e10 1-2 ( 1 ) - e11 1-2 ( 1 ) - e12 1-2 ( 1 ) - e13 1-2 ( 1 ) -$beta shells - a1 1-4 ( 1 ) - b2 1-3 ( 1 ) - e1 1-4 ( 1 ) - e2 1-4 ( 1 ) - e3 1-3 ( 1 ) - e4 1-2 ( 1 ) - e5 1-2 ( 1 ) - e6 1-2 ( 1 ) - e7 1-2 ( 1 ) - e8 1-2 ( 1 ) - e9 1-2 ( 1 ) - e10 1-2 ( 1 ) - e11 1-2 ( 1 ) - e12 1-2 ( 1 ) - e13 1-2 ( 1 ) $scfiterlimit 200 $thize 0.10000000E-04 $thime 5 @@ -93,4 +59,38 @@ $rundimensions nbf(CAO)=420 nbf(AO)=392 $last step define +$title +ridft +$alpha shells + a1 1-4 ( 1 ) + b2 1-3 ( 1 ) + e1 1-4 ( 1 ) + e2 1-4 ( 1 ) + e3 1-4 ( 1 ) + e4 1-2 ( 1 ) + e5 1-2 ( 1 ) + e6 1-2 ( 1 ) + e7 1-2 ( 1 ) + e8 1-2 ( 1 ) + e9 1-2 ( 1 ) + e10 1-2 ( 1 ) + e11 1-2 ( 1 ) + e12 1-2 ( 1 ) + e13 1-2 ( 1 ) +$beta shells + a1 1-4 ( 1 ) + b2 1-3 ( 1 ) + e1 1-4 ( 1 ) + e2 1-4 ( 1 ) + e3 1-3 ( 1 ) + e4 1-2 ( 1 ) + e5 1-2 ( 1 ) + e6 1-2 ( 1 ) + e7 1-2 ( 1 ) + e8 1-2 ( 1 ) + e9 1-2 ( 1 ) + e10 1-2 ( 1 ) + e11 1-2 ( 1 ) + e12 1-2 ( 1 ) + e13 1-2 ( 1 ) $end diff --git a/turbomoleio/testfiles/outputs/generation/ridft/h2o_dftd2_marij/TM_v7.5.1/auxbasis b/turbomoleio/testfiles/outputs/generation/ridft/h2o_dftd2_marij/TM_v7.5.1/auxbasis new file mode 100644 index 0000000..95e3afe --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/ridft/h2o_dftd2_marij/TM_v7.5.1/auxbasis @@ -0,0 +1,48 @@ +$jbas +* +o def-SV(P) +# o (8s3p3d1f) / [6s3p3d1f] {311111/111/111/1} +* + 3 s + 896.10357000 0.59760749700 + 269.72523200 1.5358077900 + 85.615077000 4.0470231300 + 1 s + 28.445035000 3.4984208300 + 1 s + 9.8069810000 -0.24387498700E-01 + 1 s + 3.4747220000 0.32147717800 + 1 s + 1.2519210000 1.1625987000 + 1 s + 0.45361300000 0.25268306900 + 1 p + 0.61470886295 -0.85578439300E-01 + 1 p + 1.4753012711 0.41799959400E-01 + 1 p + 3.6956296840 -0.58551078600E-01 + 1 d + 7.6526720000 0.88298462700E-01 + 1 d + 2.2178680000 0.11926244900 + 1 d + 0.68233700000 0.44873891700E-01 + 1 f + 2.1917808219 1.0000000000 +* +h def-SV(P) +# h (4s2p) / [2s1p] {31/2} +* + 3 s + 9.3081300000 0.34466183000E-01 + 2.3067180000 0.12253379600 + 0.75201200000 0.18250021100 + 1 s + 0.27397800000 0.22150547900E-01 + 2 p + 2.0327040000 0.29513659100E-01 + 0.79025200000 0.32755872800E-01 +* +$end diff --git a/turbomoleio/testfiles/outputs/generation/ridft/h2o_dftd2_marij/TM_v7.5.1/basis b/turbomoleio/testfiles/outputs/generation/ridft/h2o_dftd2_marij/TM_v7.5.1/basis new file mode 100644 index 0000000..0f3cddc --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/ridft/h2o_dftd2_marij/TM_v7.5.1/basis @@ -0,0 +1,35 @@ +$basis +* +o def-SV(P) +# o (7s4p1d) / [3s2p1d] {511/31/1} +* + 5 s + 2266.1767785 -0.53431809926E-02 + 340.87010191 -0.39890039230E-01 + 77.363135167 -0.17853911985 + 21.479644940 -0.46427684959 + 6.6589433124 -0.44309745172 + 1 s + 0.80975975668 1.0000000000 + 1 s + 0.25530772234 1.0000000000 + 3 p + 17.721504317 0.43394573193E-01 + 3.8635505440 0.23094120765 + 1.0480920883 0.51375311064 + 1 p + 0.27641544411 1.0000000000 + 1 d + 1.2000000000 1.0000000000 +* +h def-SV(P) +# h (4s) / [2s] {31} +* + 3 s + 13.010701000 0.19682158000E-01 + 1.9622572000 0.13796524000 + 0.44453796000 0.47831935000 + 1 s + 0.12194962000 1.0000000000 +* +$end diff --git a/turbomoleio/testfiles/outputs/generation/ridft/h2o_dftd2_marij/TM_v7.5.1/control b/turbomoleio/testfiles/outputs/generation/ridft/h2o_dftd2_marij/TM_v7.5.1/control new file mode 100644 index 0000000..ab16a70 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/ridft/h2o_dftd2_marij/TM_v7.5.1/control @@ -0,0 +1,70 @@ +$title +ridft +$symmetry c1 +$redundant file=coord +$user-defined bonds file=coord +$coord file=coord +$optimize + internal off + redundant off + cartesian on + global off + basis off +$atoms +o 1 \ + basis =o def-SV(P) \ + jbas =o def-SV(P) +h 2-3 \ + basis =h def-SV(P) \ + jbas =h def-SV(P) +$basis file=basis +$scfmo file=mos +$closed shells + a 1-5 ( 2 ) +$scfiterlimit 200 +$thize 0.10000000E-04 +$thime 5 +$scfdamp start=0.300 step=0.050 min=0.100 +$scfdump +$scfintunit + unit=30 size=0 file=twoint +$scfdiis +$maxcor 500 MiB per_core +$scforbitalshift automatic=.1 +$drvopt + cartesian on + basis off + global off + hessian on + dipole on + nuclear polarizability +$interconversion off + qconv=1.d-7 + maxiter=25 +$coordinateupdate + dqmax=0.3 + interpolate on + statistics 5 +$forceupdate + ahlrichs numgeo=0 mingeo=3 maxgeo=4 modus= dynamic fail=0.3 + threig=0.005 reseig=0.005 thrbig=3.0 scale=1.00 damping=0.0 +$forceinit on + diag=default +$energy file=energy +$grad file=gradient +$forceapprox file=forceapprox +$dft + functional b-p + gridsize m3 +$scfconv 7 +$ricore 500 +$rij +$jbas file=auxbasis +$marij +$rundimensions + natoms=3 + nbf(CAO)=19 + nbf(AO)=18 +$last step define +$disp +$end diff --git a/turbomoleio/testfiles/outputs/generation/ridft/h2o_dftd2_marij/TM_v7.5.1/coord b/turbomoleio/testfiles/outputs/generation/ridft/h2o_dftd2_marij/TM_v7.5.1/coord new file mode 100644 index 0000000..e5b5b31 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/ridft/h2o_dftd2_marij/TM_v7.5.1/coord @@ -0,0 +1,26 @@ +# RCS ################################################################ +# $Id: h2o,v 1.1 1992/04/14 15:03:13 chi Exp $ +# $Log: h2o,v $ +# Revision 1.1 1992/04/14 15:03:13 chi +# Initial revision +# +# RCS ################################################################ +$coord + 0.00000000000000 0.00000000000000 -0.72557892405437 o + 1.41713420892173 0.00000000000000 0.36278946202719 h + -1.41713420892173 0.00000000000000 0.36278946202719 h +$redundant + number_of_atoms 3 + degrees_of_freedom 2 + internal_coordinates 2 + frozen_coordinates 0 +# definitions of redundant internals + 1 k 1.0000000000000 stre 1 2 val= 1.78685 + 2 k 1.0000000000000 bend 3 2 1 val= 104.95100 + 2 non zero eigenvalues of BmBt + 1 2.360224921 1 0 + 1 + 2 0.796203512 2 0 + 2 +$user-defined bonds +$end diff --git a/turbomoleio/testfiles/outputs/generation/ridft/h2o_dftd2_marij/control b/turbomoleio/testfiles/outputs/generation/ridft/h2o_dftd2_marij/control index ab16a70..6d8f3e1 100644 --- a/turbomoleio/testfiles/outputs/generation/ridft/h2o_dftd2_marij/control +++ b/turbomoleio/testfiles/outputs/generation/ridft/h2o_dftd2_marij/control @@ -1,5 +1,3 @@ -$title -ridft $symmetry c1 $redundant file=coord $user-defined bonds file=coord @@ -19,8 +17,6 @@ h 2-3 \ jbas =h def-SV(P) $basis file=basis $scfmo file=mos -$closed shells - a 1-5 ( 2 ) $scfiterlimit 200 $thize 0.10000000E-04 $thime 5 @@ -67,4 +63,8 @@ $rundimensions nbf(AO)=18 $last step define $disp +$title +ridft +$closed shells + a 1-5 ( 2 ) $end diff --git a/turbomoleio/testfiles/outputs/generation/ridft/h2o_dftd3-bj_not_conv/TM_v7.5.1/auxbasis b/turbomoleio/testfiles/outputs/generation/ridft/h2o_dftd3-bj_not_conv/TM_v7.5.1/auxbasis new file mode 100644 index 0000000..95e3afe --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/ridft/h2o_dftd3-bj_not_conv/TM_v7.5.1/auxbasis @@ -0,0 +1,48 @@ +$jbas +* +o def-SV(P) +# o (8s3p3d1f) / [6s3p3d1f] {311111/111/111/1} +* + 3 s + 896.10357000 0.59760749700 + 269.72523200 1.5358077900 + 85.615077000 4.0470231300 + 1 s + 28.445035000 3.4984208300 + 1 s + 9.8069810000 -0.24387498700E-01 + 1 s + 3.4747220000 0.32147717800 + 1 s + 1.2519210000 1.1625987000 + 1 s + 0.45361300000 0.25268306900 + 1 p + 0.61470886295 -0.85578439300E-01 + 1 p + 1.4753012711 0.41799959400E-01 + 1 p + 3.6956296840 -0.58551078600E-01 + 1 d + 7.6526720000 0.88298462700E-01 + 1 d + 2.2178680000 0.11926244900 + 1 d + 0.68233700000 0.44873891700E-01 + 1 f + 2.1917808219 1.0000000000 +* +h def-SV(P) +# h (4s2p) / [2s1p] {31/2} +* + 3 s + 9.3081300000 0.34466183000E-01 + 2.3067180000 0.12253379600 + 0.75201200000 0.18250021100 + 1 s + 0.27397800000 0.22150547900E-01 + 2 p + 2.0327040000 0.29513659100E-01 + 0.79025200000 0.32755872800E-01 +* +$end diff --git a/turbomoleio/testfiles/outputs/generation/ridft/h2o_dftd3-bj_not_conv/TM_v7.5.1/basis b/turbomoleio/testfiles/outputs/generation/ridft/h2o_dftd3-bj_not_conv/TM_v7.5.1/basis new file mode 100644 index 0000000..0f3cddc --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/ridft/h2o_dftd3-bj_not_conv/TM_v7.5.1/basis @@ -0,0 +1,35 @@ +$basis +* +o def-SV(P) +# o (7s4p1d) / [3s2p1d] {511/31/1} +* + 5 s + 2266.1767785 -0.53431809926E-02 + 340.87010191 -0.39890039230E-01 + 77.363135167 -0.17853911985 + 21.479644940 -0.46427684959 + 6.6589433124 -0.44309745172 + 1 s + 0.80975975668 1.0000000000 + 1 s + 0.25530772234 1.0000000000 + 3 p + 17.721504317 0.43394573193E-01 + 3.8635505440 0.23094120765 + 1.0480920883 0.51375311064 + 1 p + 0.27641544411 1.0000000000 + 1 d + 1.2000000000 1.0000000000 +* +h def-SV(P) +# h (4s) / [2s] {31} +* + 3 s + 13.010701000 0.19682158000E-01 + 1.9622572000 0.13796524000 + 0.44453796000 0.47831935000 + 1 s + 0.12194962000 1.0000000000 +* +$end diff --git a/turbomoleio/testfiles/outputs/generation/ridft/h2o_dftd3-bj_not_conv/TM_v7.5.1/control b/turbomoleio/testfiles/outputs/generation/ridft/h2o_dftd3-bj_not_conv/TM_v7.5.1/control new file mode 100644 index 0000000..d181ecf --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/ridft/h2o_dftd3-bj_not_conv/TM_v7.5.1/control @@ -0,0 +1,69 @@ +$title +ridft +$symmetry c1 +$redundant file=coord +$user-defined bonds file=coord +$coord file=coord +$optimize + internal off + redundant off + cartesian on + global off + basis off +$atoms +o 1 \ + basis =o def-SV(P) \ + jbas =o def-SV(P) +h 2-3 \ + basis =h def-SV(P) \ + jbas =h def-SV(P) +$basis file=basis +$scfmo file=mos +$closed shells + a 1-5 ( 2 ) +$scfiterlimit 3 +$thize 0.10000000E-04 +$thime 5 +$scfdamp start=0.300 step=0.050 min=0.100 +$scfdump +$scfintunit + unit=30 size=0 file=twoint +$scfdiis +$maxcor 500 MiB per_core +$scforbitalshift automatic=.1 +$drvopt + cartesian on + basis off + global off + hessian on + dipole on + nuclear polarizability +$interconversion off + qconv=1.d-7 + maxiter=25 +$coordinateupdate + dqmax=0.3 + interpolate on + statistics 5 +$forceupdate + ahlrichs numgeo=0 mingeo=3 maxgeo=4 modus= dynamic fail=0.3 + threig=0.005 reseig=0.005 thrbig=3.0 scale=1.00 damping=0.0 +$forceinit on + diag=default +$energy file=energy +$grad file=gradient +$forceapprox file=forceapprox +$dft + functional b-p + gridsize m3 +$ricore 500 +$rij +$jbas file=auxbasis +$rundimensions + natoms=3 + nbf(CAO)=19 + nbf(AO)=18 +$last step define +$disp3 bj +$scfconv 8 +$end diff --git a/turbomoleio/testfiles/outputs/generation/ridft/h2o_dftd3-bj_not_conv/TM_v7.5.1/coord b/turbomoleio/testfiles/outputs/generation/ridft/h2o_dftd3-bj_not_conv/TM_v7.5.1/coord new file mode 100644 index 0000000..e5b5b31 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/ridft/h2o_dftd3-bj_not_conv/TM_v7.5.1/coord @@ -0,0 +1,26 @@ +# RCS ################################################################ +# $Id: h2o,v 1.1 1992/04/14 15:03:13 chi Exp $ +# $Log: h2o,v $ +# Revision 1.1 1992/04/14 15:03:13 chi +# Initial revision +# +# RCS ################################################################ +$coord + 0.00000000000000 0.00000000000000 -0.72557892405437 o + 1.41713420892173 0.00000000000000 0.36278946202719 h + -1.41713420892173 0.00000000000000 0.36278946202719 h +$redundant + number_of_atoms 3 + degrees_of_freedom 2 + internal_coordinates 2 + frozen_coordinates 0 +# definitions of redundant internals + 1 k 1.0000000000000 stre 1 2 val= 1.78685 + 2 k 1.0000000000000 bend 3 2 1 val= 104.95100 + 2 non zero eigenvalues of BmBt + 1 2.360224921 1 0 + 1 + 2 0.796203512 2 0 + 2 +$user-defined bonds +$end diff --git a/turbomoleio/testfiles/outputs/generation/ridft/h2o_dftd3-bj_not_conv/control b/turbomoleio/testfiles/outputs/generation/ridft/h2o_dftd3-bj_not_conv/control index d181ecf..4e2db76 100644 --- a/turbomoleio/testfiles/outputs/generation/ridft/h2o_dftd3-bj_not_conv/control +++ b/turbomoleio/testfiles/outputs/generation/ridft/h2o_dftd3-bj_not_conv/control @@ -1,5 +1,3 @@ -$title -ridft $symmetry c1 $redundant file=coord $user-defined bonds file=coord @@ -19,8 +17,6 @@ h 2-3 \ jbas =h def-SV(P) $basis file=basis $scfmo file=mos -$closed shells - a 1-5 ( 2 ) $scfiterlimit 3 $thize 0.10000000E-04 $thime 5 @@ -66,4 +62,8 @@ $rundimensions $last step define $disp3 bj $scfconv 8 +$title +ridft +$closed shells + a 1-5 ( 2 ) $end diff --git a/turbomoleio/testfiles/outputs/generation/ridft/nh3_rijk_libxc_m06/TM_v7.5.1/auxbasis b/turbomoleio/testfiles/outputs/generation/ridft/nh3_rijk_libxc_m06/TM_v7.5.1/auxbasis new file mode 100644 index 0000000..9d791f6 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/ridft/nh3_rijk_libxc_m06/TM_v7.5.1/auxbasis @@ -0,0 +1,83 @@ +$jkbas +* +n def-SV(P) +# n (14s10p6d2f1g) / [10s8p4d2f1g] {5111111111/31111111/3111/11/1} +* + 5 s + 502.86084920 0.17948662110 + 209.96500460 0.16394914980 + 92.434008900 0.55297971800 + 42.817583500 0.58582103980 + 20.817615400 0.53192624460 + 1 s + 10.591289400 0.94798946400E-01 + 1 s + 5.6186543000 1.0000000000 + 1 s + 3.0952689000 1.0000000000 + 1 s + 1.7624885000 1.0000000000 + 1 s + 1.0319737000 1.0000000000 + 1 s + 0.61783520000 1.0000000000 + 1 s + 0.37593430000 1.0000000000 + 1 s + 0.23100830000 1.0000000000 + 1 s + 0.14242240000 1.0000000000 + 3 p + 44.607497200 0.51530130010 + 22.523067100 0.19383347500 + 11.372330300 0.81042183410 + 1 p + 5.7421344000 0.20027382490 + 1 p + 2.8993384000 1.0000000000 + 1 p + 1.4639486000 1.0000000000 + 1 p + 0.73918610000 1.0000000000 + 1 p + 0.37323510000 1.0000000000 + 1 p + 0.18845670000 1.0000000000 + 1 p + 0.95157100000E-01 1.0000000000 + 3 d + 46.844040600 0.39944270800E-01 + 14.882456100 0.27216475910 + 5.3437066000 0.96142123920 + 1 d + 2.1154199000 1.0000000000 + 1 d + 0.89232180000 1.0000000000 + 1 d + 0.38480430000 1.0000000000 + 1 f + 2.4229788000 0.69222939090 + 1 f + 0.83354410000 0.72167753900 + 1 g + 1.4586791000 1.0000000000 +* +h def-SV(P) +# h (4s2p2d) / [2s2p2d] {31/11/11} +* + 3 s + 22.068343000 0.53033986000E-01 + 4.3905712000 0.39465220220 + 1.0540787000 0.91729877120 + 1 s + 0.27178740000 1.0000000000 + 1 p + 1.8529979000 1.0000000000 + 1 p + 0.38810340000 1.0000000000 + 1 d + 2.5579933000 1.0000000000 + 1 d + 0.32926490000 1.0000000000 +* +$end diff --git a/turbomoleio/testfiles/outputs/generation/ridft/nh3_rijk_libxc_m06/TM_v7.5.1/basis b/turbomoleio/testfiles/outputs/generation/ridft/nh3_rijk_libxc_m06/TM_v7.5.1/basis new file mode 100644 index 0000000..8d3f543 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/ridft/nh3_rijk_libxc_m06/TM_v7.5.1/basis @@ -0,0 +1,35 @@ +$basis +* +n def-SV(P) +# n (7s4p1d) / [3s2p1d] {511/31/1} +* + 5 s + 1712.8415853 -0.53934125305E-02 + 257.64812677 -0.40221581118E-01 + 58.458245853 -0.17931144990 + 16.198367905 -0.46376317823 + 5.0052600809 -0.44171422662 + 1 s + 0.58731856571 1.0000000000 + 1 s + 0.18764592253 1.0000000000 + 3 p + 13.571470233 -0.40072398852E-01 + 2.9257372874 -0.21807045028 + 0.79927750754 -0.51294466049 + 1 p + 0.21954348034 1.0000000000 + 1 d + 1.0000000000 1.0000000000 +* +h def-SV(P) +# h (4s) / [2s] {31} +* + 3 s + 13.010701000 0.19682158000E-01 + 1.9622572000 0.13796524000 + 0.44453796000 0.47831935000 + 1 s + 0.12194962000 1.0000000000 +* +$end diff --git a/turbomoleio/testfiles/outputs/generation/ridft/nh3_rijk_libxc_m06/TM_v7.5.1/control b/turbomoleio/testfiles/outputs/generation/ridft/nh3_rijk_libxc_m06/TM_v7.5.1/control new file mode 100644 index 0000000..0868054 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/ridft/nh3_rijk_libxc_m06/TM_v7.5.1/control @@ -0,0 +1,68 @@ +$title +ridft +$symmetry c1 +$user-defined bonds file=coord +$coord file=coord +$optimize + internal off + redundant off + cartesian on + global off + basis off +$atoms +n 1 \ + basis =n def-SV(P) \ + jkbas =n def-SV(P) +h 2-4 \ + basis =h def-SV(P) \ + jkbas =h def-SV(P) +$basis file=basis +$scfmo file=mos +$closed shells + a 1-5 ( 2 ) +$scfiterlimit 200 +$thize 0.10000000E-04 +$thime 5 +$scfdamp start=0.300 step=0.050 min=0.100 +$scfdump +$scfintunit + unit=30 size=0 file=twoint +$scfdiis +$maxcor 500 MiB per_core +$scforbitalshift automatic=.1 +$drvopt + cartesian on + basis off + global off + hessian on + dipole on + nuclear polarizability +$interconversion off + qconv=1.d-7 + maxiter=25 +$coordinateupdate + dqmax=0.3 + interpolate on + statistics 5 +$forceupdate + ahlrichs numgeo=0 mingeo=3 maxgeo=4 modus= dynamic fail=0.3 + threig=0.005 reseig=0.005 thrbig=3.0 scale=1.00 damping=0.0 +$forceinit on + diag=default +$energy file=energy +$grad file=gradient +$forceapprox file=forceapprox +$dft + functional m06 + gridsize m3 +$scfconv 7 +$ricore 500 +$rij +$jkbas file=auxbasis +$rik +$rundimensions + natoms=4 + nbf(CAO)=21 + nbf(AO)=20 +$last step define +$end diff --git a/turbomoleio/testfiles/outputs/generation/ridft/nh3_rijk_libxc_m06/TM_v7.5.1/coord b/turbomoleio/testfiles/outputs/generation/ridft/nh3_rijk_libxc_m06/TM_v7.5.1/coord new file mode 100644 index 0000000..cc784d1 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/ridft/nh3_rijk_libxc_m06/TM_v7.5.1/coord @@ -0,0 +1,14 @@ +# RCS ################################################################ +# $Id: nh3,v 1.1 1992/04/14 15:03:21 chi Exp $ +# $Log: nh3,v $ +# Revision 1.1 1992/04/14 15:03:21 chi +# Initial revision +# +# RCS ################################################################ +$coord + 0.00000000000000 0.00000000000000 0.12917062194577 n + 1.75612466223131 0.00000000000000 -0.59831613718919 h + -0.87806233111566 1.52084856970468 -0.59831613718919 h + -0.87806233111566 -1.52084856970468 -0.59831613718919 h +$user-defined bonds +$end diff --git a/turbomoleio/testfiles/outputs/generation/ridft/nh3_rijk_libxc_m06/control b/turbomoleio/testfiles/outputs/generation/ridft/nh3_rijk_libxc_m06/control index 0868054..45f18c4 100644 --- a/turbomoleio/testfiles/outputs/generation/ridft/nh3_rijk_libxc_m06/control +++ b/turbomoleio/testfiles/outputs/generation/ridft/nh3_rijk_libxc_m06/control @@ -1,5 +1,3 @@ -$title -ridft $symmetry c1 $user-defined bonds file=coord $coord file=coord @@ -18,8 +16,6 @@ h 2-4 \ jkbas =h def-SV(P) $basis file=basis $scfmo file=mos -$closed shells - a 1-5 ( 2 ) $scfiterlimit 200 $thize 0.10000000E-04 $thime 5 @@ -65,4 +61,8 @@ $rundimensions nbf(CAO)=21 nbf(AO)=20 $last step define +$title +ridft +$closed shells + a 1-5 ( 2 ) $end diff --git a/turbomoleio/testfiles/outputs/generation/rimp2/h2o_std_mp2/TM_v7.5.1/auxbasis b/turbomoleio/testfiles/outputs/generation/rimp2/h2o_std_mp2/TM_v7.5.1/auxbasis new file mode 100644 index 0000000..7ccdbe6 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/rimp2/h2o_std_mp2/TM_v7.5.1/auxbasis @@ -0,0 +1,146 @@ +$cbas +* +o def-SV(P) +# o (8s6p5d3f) / [6s5p4d1f] {311111/21111/2111/3} +* + 3 s + 364.91291000 0.58060367000 + 77.387094000 1.4017984900 + 24.301706000 0.34994578000 + 1 s + 8.4369545000 1.0000000000 + 1 s + 3.1527941000 1.0000000000 + 1 s + 1.5775430000 1.0000000000 + 1 s + 0.78178244000 1.0000000000 + 1 s + 0.31652679000 1.0000000000 + 2 p + 56.735948000 1.0602441000 + 14.997217000 1.2003825800 + 1 p + 5.6428116000 1.0000000000 + 1 p + 2.4069219800 1.0000000000 + 1 p + 1.0264059600 1.0000000000 + 1 p + 0.43769977000 1.0000000000 + 2 d + 12.446821000 1.1371699500 + 6.1216917000 0.77017590000 + 1 d + 2.7102949000 1.0000000000 + 1 d + 1.1524061000 1.0000000000 + 1 d + 0.41386174000 1.0000000000 + 3 f + 4.7793539000 0.25251741000 + 2.3204642000 1.7867127800 + 1.0912804000 0.32923623000 +* +h def-SV(P) +# h (4s3p2d) / [3s2p1d] {211/21/2} +* + 2 s + 9.3352160900 0.64609379000 + 1.8611070400 1.3700524100 + 1 s + 0.59512466000 1.0000000000 + 1 s + 0.26448099000 1.0000000000 + 2 p + 2.4524982100 0.13284956000 + 1.3540383000 1.4527621500 + 1 p + 0.59522394000 1.0000000000 + 2 d + 1.5816376600 1.4936739700 + 0.62743960000 -0.10706900000E-01 +* +$jkbas +* +o def-SV(P) +# o (14s10p6d2f1g) / [10s8p4d2f1g] {5111111111/31111111/3111/11/1} +* + 5 s + 625.28298110 0.18479249890 + 253.93274180 0.19224605780 + 109.04929550 0.59372043000 + 49.423005600 0.60593463970 + 23.580521100 0.45741933600 + 1 s + 11.807759100 1.0000000000 + 1 s + 6.1827814000 1.0000000000 + 1 s + 3.3709061000 1.0000000000 + 1 s + 1.9042805000 1.0000000000 + 1 s + 1.1085447000 1.0000000000 + 1 s + 0.66098860000 1.0000000000 + 1 s + 0.40108140000 1.0000000000 + 1 s + 0.24597690000 1.0000000000 + 1 s + 0.15139390000 1.0000000000 + 3 p + 77.687483800 0.39010104350 + 22.415388400 0.83793482660 + 9.8906463000 0.38168888150 + 1 p + 5.4848863000 1.0000000000 + 1 p + 2.9732983000 1.0000000000 + 1 p + 1.4735260000 1.0000000000 + 1 p + 0.73603410000 1.0000000000 + 1 p + 0.36974140000 1.0000000000 + 1 p + 0.18637210000 1.0000000000 + 1 p + 0.94990600000E-01 1.0000000000 + 3 d + 37.707107400 0.77860015600E-01 + 14.775254300 0.31355206270 + 5.8470900000 0.94637356360 + 1 d + 2.3304365000 1.0000000000 + 1 d + 0.93282670000 1.0000000000 + 1 d + 0.37392850000 1.0000000000 + 1 f + 3.0293422000 0.76154791140 + 1 f + 0.92484900000 0.64810861640 + 1 g + 1.6934809000 1.0000000000 +* +h def-SV(P) +# h (4s2p2d) / [2s2p2d] {31/11/11} +* + 3 s + 22.068343000 0.53033986000E-01 + 4.3905712000 0.39465220220 + 1.0540787000 0.91729877120 + 1 s + 0.27178740000 1.0000000000 + 1 p + 1.8529979000 1.0000000000 + 1 p + 0.38810340000 1.0000000000 + 1 d + 2.5579933000 1.0000000000 + 1 d + 0.32926490000 1.0000000000 +* +$end diff --git a/turbomoleio/testfiles/outputs/generation/rimp2/h2o_std_mp2/TM_v7.5.1/basis b/turbomoleio/testfiles/outputs/generation/rimp2/h2o_std_mp2/TM_v7.5.1/basis new file mode 100644 index 0000000..0f3cddc --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/rimp2/h2o_std_mp2/TM_v7.5.1/basis @@ -0,0 +1,35 @@ +$basis +* +o def-SV(P) +# o (7s4p1d) / [3s2p1d] {511/31/1} +* + 5 s + 2266.1767785 -0.53431809926E-02 + 340.87010191 -0.39890039230E-01 + 77.363135167 -0.17853911985 + 21.479644940 -0.46427684959 + 6.6589433124 -0.44309745172 + 1 s + 0.80975975668 1.0000000000 + 1 s + 0.25530772234 1.0000000000 + 3 p + 17.721504317 0.43394573193E-01 + 3.8635505440 0.23094120765 + 1.0480920883 0.51375311064 + 1 p + 0.27641544411 1.0000000000 + 1 d + 1.2000000000 1.0000000000 +* +h def-SV(P) +# h (4s) / [2s] {31} +* + 3 s + 13.010701000 0.19682158000E-01 + 1.9622572000 0.13796524000 + 0.44453796000 0.47831935000 + 1 s + 0.12194962000 1.0000000000 +* +$end diff --git a/turbomoleio/testfiles/outputs/generation/rimp2/h2o_std_mp2/TM_v7.5.1/control b/turbomoleio/testfiles/outputs/generation/rimp2/h2o_std_mp2/TM_v7.5.1/control new file mode 100644 index 0000000..828d4ab --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/rimp2/h2o_std_mp2/TM_v7.5.1/control @@ -0,0 +1,75 @@ +$title +ridft_rimp2 +$symmetry c1 n +$redundant file=coord +$user-defined bonds file=coord +$coord file=coord +$optimize + internal off + redundant off + cartesian on + global off + basis off +$atoms +o 1 \ + basis =o def-SV(P) \ + cbas =o def-SV(P) \ + jkbas =o def-SV(P) +h 2-3 \ + basis =h def-SV(P) \ + cbas =h def-SV(P) \ + jkbas =h def-SV(P) +$basis file=basis +$scfmo file=mos +$closed shells + a 1-5 ( 2 ) +$scfiterlimit 200 +$scfconv 7 +$thize 0.10000000E-04 +$thime 5 +$scfdamp start=0.300 step=0.050 min=0.100 +$scfdump +$scfintunit + unit=30 size=0 file=twoint +$scfdiis +$maxcor 500 MiB per_core +$scforbitalshift automatic=.1 +$drvopt + cartesian on + basis off + global off + hessian on + dipole on + nuclear polarizability +$interconversion off + qconv=1.d-7 + maxiter=25 +$coordinateupdate + dqmax=0.3 + interpolate on + statistics 5 +$forceupdate + ahlrichs numgeo=0 mingeo=3 maxgeo=4 modus= dynamic fail=0.3 + threig=0.005 reseig=0.005 thrbig=3.0 scale=1.00 damping=0.0 +$forceinit on + diag=default +$energy file=energy +$grad file=gradient +$forceapprox file=forceapprox +$denconv 0.10000000E-06 +$freeze + implicit core= 1 virt= 0 +$cbas file=auxbasis +$ricc2 + mp2 + geoopt model=mp2 state=(x) +$ricore 500 +$rij +$jkbas file=auxbasis +$rik +$rundimensions + natoms=3 + nbf(CAO)=19 + nbf(AO)=18 +$last step define +$end diff --git a/turbomoleio/testfiles/outputs/generation/rimp2/h2o_std_mp2/TM_v7.5.1/coord b/turbomoleio/testfiles/outputs/generation/rimp2/h2o_std_mp2/TM_v7.5.1/coord new file mode 100644 index 0000000..e5b5b31 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/rimp2/h2o_std_mp2/TM_v7.5.1/coord @@ -0,0 +1,26 @@ +# RCS ################################################################ +# $Id: h2o,v 1.1 1992/04/14 15:03:13 chi Exp $ +# $Log: h2o,v $ +# Revision 1.1 1992/04/14 15:03:13 chi +# Initial revision +# +# RCS ################################################################ +$coord + 0.00000000000000 0.00000000000000 -0.72557892405437 o + 1.41713420892173 0.00000000000000 0.36278946202719 h + -1.41713420892173 0.00000000000000 0.36278946202719 h +$redundant + number_of_atoms 3 + degrees_of_freedom 2 + internal_coordinates 2 + frozen_coordinates 0 +# definitions of redundant internals + 1 k 1.0000000000000 stre 1 2 val= 1.78685 + 2 k 1.0000000000000 bend 3 2 1 val= 104.95100 + 2 non zero eigenvalues of BmBt + 1 2.360224921 1 0 + 1 + 2 0.796203512 2 0 + 2 +$user-defined bonds +$end diff --git a/turbomoleio/testfiles/outputs/generation/rimp2/h2o_std_mp2/control b/turbomoleio/testfiles/outputs/generation/rimp2/h2o_std_mp2/control index 828d4ab..563d175 100644 --- a/turbomoleio/testfiles/outputs/generation/rimp2/h2o_std_mp2/control +++ b/turbomoleio/testfiles/outputs/generation/rimp2/h2o_std_mp2/control @@ -1,5 +1,3 @@ -$title -ridft_rimp2 $symmetry c1 n $redundant file=coord $user-defined bonds file=coord @@ -21,8 +19,6 @@ h 2-3 \ jkbas =h def-SV(P) $basis file=basis $scfmo file=mos -$closed shells - a 1-5 ( 2 ) $scfiterlimit 200 $scfconv 7 $thize 0.10000000E-04 @@ -72,4 +68,8 @@ $rundimensions nbf(CAO)=19 nbf(AO)=18 $last step define +$title +ridft_rimp2 +$closed shells + a 1-5 ( 2 ) $end diff --git a/turbomoleio/testfiles/outputs/generation/riper/bulk_LiH/TM_v7.5.1/basis b/turbomoleio/testfiles/outputs/generation/riper/bulk_LiH/TM_v7.5.1/basis new file mode 100644 index 0000000..f3594f3 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/riper/bulk_LiH/TM_v7.5.1/basis @@ -0,0 +1,30 @@ +$basis +* +li SV(P) +# li (7s2p) / [3s1p] {511/2} +* + 5 s + 266.27785516 0.64920150325E-02 + 40.069783447 0.47747863215E-01 + 9.0559944389 0.20268796111 + 2.4503009051 0.48606574817 + 0.72209571855 0.43626977955 + 1 s + 0.52810884721E-01 1.0000000000 + 1 s + 0.20960948798E-01 1.0000000000 + 2 p + 0.45000000000 0.37100000000 + 0.10000000000 1.0000000000 +* +h SV(P) +# h (4s) / [2s] {31} +* + 3 s + 13.010701000 0.19682158000E-01 + 1.9622572000 0.13796524000 + 0.44453796000 0.47831935000 + 1 s + 0.12194962000 1.0000000000 +* +$end diff --git a/turbomoleio/testfiles/outputs/generation/riper/bulk_LiH/TM_v7.5.1/control b/turbomoleio/testfiles/outputs/generation/riper/bulk_LiH/TM_v7.5.1/control new file mode 100644 index 0000000..e81f2e8 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/riper/bulk_LiH/TM_v7.5.1/control @@ -0,0 +1,76 @@ +$title +dscf +$symmetry c1 n +$user-defined bonds file=coord +$coord file=coord +$optimize + internal off + redundant off + cartesian on + global off + basis off +$atoms +li 1 \ + basis =li SV(P) +h 2 \ + basis =h SV(P) +$basis file=basis +$scfmo file=mos +$closed shells + a 1-2 ( 2 ) +$scfiterlimit 200 +$thize 0.10000000E-04 +$thime 5 +$scfdamp start=0.300 step=0.050 min=0.100 +$scfdump +$scfintunit + unit=30 size=0 file=twoint +$scfdiis +$maxcor 500 MiB per_core +$scforbitalshift automatic=.1 +$drvopt + cartesian on + basis off + global off + hessian on + dipole on + nuclear polarizability +$interconversion off + qconv=1.d-7 + maxiter=25 +$coordinateupdate + dqmax=0.3 + interpolate on + statistics 5 +$forceupdate + ahlrichs numgeo=0 mingeo=3 maxgeo=4 modus= dynamic fail=0.3 + threig=0.005 reseig=0.005 thrbig=3.0 scale=1.00 damping=0.0 +$forceinit on + diag=default +$energy file=energy +$grad file=gradient +$forceapprox file=forceapprox +$dft + functional b-p + gridsize m3 +$rundimensions + natoms=2 + nbf(CAO)=8 + nbf(AO)=8 +$last step define +$periodic 3 +$cell + 5.345185132166401 5.345185132166401 5.345185132166402 60.0 60.0 60.0 +$kpoints + nkpoints 1 1 1 +$riper + lmaxmom 3 + sigma 0.01 + nctrgt 3 + wsicl 2.0 + epsbext 1.0d-2 + thrints 1.0d-8 + lenonly on +$optcell +$scfconv 3 +$end diff --git a/turbomoleio/testfiles/outputs/generation/riper/bulk_LiH/TM_v7.5.1/coord b/turbomoleio/testfiles/outputs/generation/riper/bulk_LiH/TM_v7.5.1/coord new file mode 100644 index 0000000..382f884 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/riper/bulk_LiH/TM_v7.5.1/coord @@ -0,0 +1,5 @@ +$coord + 0.00000000000000 0.00000000000000 0.00000000000000 li + 5.34518513216640 3.08604407492466 2.18216269241979 h +$user-defined bonds +$end diff --git a/turbomoleio/testfiles/outputs/generation/riper/bulk_LiH/control b/turbomoleio/testfiles/outputs/generation/riper/bulk_LiH/control index e81f2e8..7307c22 100644 --- a/turbomoleio/testfiles/outputs/generation/riper/bulk_LiH/control +++ b/turbomoleio/testfiles/outputs/generation/riper/bulk_LiH/control @@ -1,5 +1,3 @@ -$title -dscf $symmetry c1 n $user-defined bonds file=coord $coord file=coord @@ -16,8 +14,6 @@ h 2 \ basis =h SV(P) $basis file=basis $scfmo file=mos -$closed shells - a 1-2 ( 2 ) $scfiterlimit 200 $thize 0.10000000E-04 $thime 5 @@ -73,4 +69,8 @@ $riper lenonly on $optcell $scfconv 3 +$title +dscf +$closed shells + a 1-2 ( 2 ) $end diff --git a/turbomoleio/testfiles/outputs/generation/riper/graphene/TM_v7.5.1/basis b/turbomoleio/testfiles/outputs/generation/riper/graphene/TM_v7.5.1/basis new file mode 100644 index 0000000..b06e403 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/riper/graphene/TM_v7.5.1/basis @@ -0,0 +1,25 @@ +$basis +* +c def-SV(P) +# c (7s4p1d) / [3s2p1d] {511/31/1} +* + 5 s + 1238.4016938 0.54568832082E-02 + 186.29004992 0.40638409211E-01 + 42.251176346 0.18025593888 + 11.676557932 0.46315121755 + 3.5930506482 0.44087173314 + 1 s + 0.40245147363 1.0000000000 + 1 s + 0.13090182668 1.0000000000 + 3 p + 9.4680970621 0.38387871728E-01 + 2.0103545142 0.21117025112 + 0.54771004707 0.51328172114 + 1 p + 0.15268613795 1.0000000000 + 1 d + 0.80000000000 1.0000000000 +* +$end diff --git a/turbomoleio/testfiles/outputs/generation/riper/graphene/TM_v7.5.1/control b/turbomoleio/testfiles/outputs/generation/riper/graphene/TM_v7.5.1/control new file mode 100644 index 0000000..741ce79 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/riper/graphene/TM_v7.5.1/control @@ -0,0 +1,67 @@ +$title +dscf +$symmetry c1 n +$user-defined bonds file=coord +$coord file=coord +$optimize + internal off + redundant off + cartesian on + global off + basis off +$atoms +c 1-2 \ + basis =c def-SV(P) +$basis file=basis +$scfmo file=mos +$closed shells + a 1-6 ( 2 ) +$scfiterlimit 200 +$thize 0.10000000E-04 +$thime 5 +$scfdamp start=0.300 step=0.050 min=0.100 +$scfdump +$scfintunit + unit=30 size=0 file=twoint +$scfdiis +$maxcor 500 MiB per_core +$scforbitalshift automatic=.1 +$drvopt + cartesian on + basis off + global off + hessian on + dipole on + nuclear polarizability +$interconversion off + qconv=1.d-7 + maxiter=25 +$coordinateupdate + dqmax=0.3 + interpolate on + statistics 5 +$forceupdate + ahlrichs numgeo=0 mingeo=3 maxgeo=4 modus= dynamic fail=0.3 + threig=0.005 reseig=0.005 thrbig=3.0 scale=1.00 damping=0.0 +$forceinit on + diag=default +$energy file=energy +$grad file=gradient +$forceapprox file=forceapprox +$dft + functional b-p + gridsize m3 +$scfconv 7 +$rundimensions + natoms=2 + nbf(CAO)=30 + nbf(AO)=28 +$last step define +$periodic 2 +$cell + 4.664630258336029 4.664630258336029 120.00000085999999 +$kpoints + nkpoints 2 2 +$riper + sigma 0.01 +$end diff --git a/turbomoleio/testfiles/outputs/generation/riper/graphene/TM_v7.5.1/coord b/turbomoleio/testfiles/outputs/generation/riper/graphene/TM_v7.5.1/coord new file mode 100644 index 0000000..c9e2817 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/riper/graphene/TM_v7.5.1/coord @@ -0,0 +1,5 @@ +$coord + -0.00000004042336 2.69312551198194 0.00000000000000 c + 2.33231510895633 1.34656275599097 0.00000000000000 c +$user-defined bonds +$end diff --git a/turbomoleio/testfiles/outputs/generation/riper/graphene/control b/turbomoleio/testfiles/outputs/generation/riper/graphene/control index 741ce79..69f7e1b 100644 --- a/turbomoleio/testfiles/outputs/generation/riper/graphene/control +++ b/turbomoleio/testfiles/outputs/generation/riper/graphene/control @@ -1,5 +1,3 @@ -$title -dscf $symmetry c1 n $user-defined bonds file=coord $coord file=coord @@ -14,8 +12,6 @@ c 1-2 \ basis =c def-SV(P) $basis file=basis $scfmo file=mos -$closed shells - a 1-6 ( 2 ) $scfiterlimit 200 $thize 0.10000000E-04 $thime 5 @@ -64,4 +60,8 @@ $kpoints nkpoints 2 2 $riper sigma 0.01 +$title +dscf +$closed shells + a 1-6 ( 2 ) $end diff --git a/turbomoleio/testfiles/outputs/generation/riper/h_chain/TM_v7.5.1/basis b/turbomoleio/testfiles/outputs/generation/riper/h_chain/TM_v7.5.1/basis new file mode 100644 index 0000000..f47ff71 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/riper/h_chain/TM_v7.5.1/basis @@ -0,0 +1,13 @@ +$basis +* +h def-SV(P) +# h (4s) / [2s] {31} +* + 3 s + 13.010701000 0.19682158000E-01 + 1.9622572000 0.13796524000 + 0.44453796000 0.47831935000 + 1 s + 0.12194962000 1.0000000000 +* +$end diff --git a/turbomoleio/testfiles/outputs/generation/riper/h_chain/TM_v7.5.1/control b/turbomoleio/testfiles/outputs/generation/riper/h_chain/TM_v7.5.1/control new file mode 100644 index 0000000..492d492 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/riper/h_chain/TM_v7.5.1/control @@ -0,0 +1,67 @@ +$title +dscf +$symmetry c1 n +$user-defined bonds file=coord +$coord file=coord +$optimize + internal off + redundant off + cartesian on + global off + basis off +$atoms +h 1-2 \ + basis =h def-SV(P) +$basis file=basis +$scfmo file=mos +$closed shells + a 1 ( 2 ) +$scfiterlimit 200 +$thize 0.10000000E-04 +$thime 5 +$scfdamp start=0.300 step=0.050 min=0.100 +$scfdump +$scfintunit + unit=30 size=0 file=twoint +$scfdiis +$maxcor 500 MiB per_core +$scforbitalshift automatic=.1 +$drvopt + cartesian on + basis off + global off + hessian on + dipole on + nuclear polarizability +$interconversion off + qconv=1.d-7 + maxiter=25 +$coordinateupdate + dqmax=0.3 + interpolate on + statistics 5 +$forceupdate + ahlrichs numgeo=0 mingeo=3 maxgeo=4 modus= dynamic fail=0.3 + threig=0.005 reseig=0.005 thrbig=3.0 scale=1.00 damping=0.0 +$forceinit on + diag=default +$energy file=energy +$grad file=gradient +$forceapprox file=forceapprox +$dft + functional b-p + gridsize m3 +$scfconv 7 +$rundimensions + natoms=2 + nbf(CAO)=4 + nbf(AO)=4 +$last step define +$periodic 1 +$cell + 3.7794522492515403 +$kpoints + nkpoints 4 +$riper + sigma 0.01 +$end diff --git a/turbomoleio/testfiles/outputs/generation/riper/h_chain/TM_v7.5.1/coord b/turbomoleio/testfiles/outputs/generation/riper/h_chain/TM_v7.5.1/coord new file mode 100644 index 0000000..63576d3 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/riper/h_chain/TM_v7.5.1/coord @@ -0,0 +1,5 @@ +$coord + 0.94486306231289 0.00000000000000 0.00000000000000 h + 2.83458918693866 0.00000000000000 0.00000000000000 h +$user-defined bonds +$end diff --git a/turbomoleio/testfiles/outputs/generation/riper/h_chain/control b/turbomoleio/testfiles/outputs/generation/riper/h_chain/control index 492d492..a49cff2 100644 --- a/turbomoleio/testfiles/outputs/generation/riper/h_chain/control +++ b/turbomoleio/testfiles/outputs/generation/riper/h_chain/control @@ -1,5 +1,3 @@ -$title -dscf $symmetry c1 n $user-defined bonds file=coord $coord file=coord @@ -14,8 +12,6 @@ h 1-2 \ basis =h def-SV(P) $basis file=basis $scfmo file=mos -$closed shells - a 1 ( 2 ) $scfiterlimit 200 $thize 0.10000000E-04 $thime 5 @@ -64,4 +60,8 @@ $kpoints nkpoints 4 $riper sigma 0.01 +$title +dscf +$closed shells + a 1 ( 2 ) $end diff --git a/turbomoleio/testfiles/outputs/generation/statpt/aceton_cartesian/TM_v7.5.1/basis b/turbomoleio/testfiles/outputs/generation/statpt/aceton_cartesian/TM_v7.5.1/basis new file mode 100644 index 0000000..439a987 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/statpt/aceton_cartesian/TM_v7.5.1/basis @@ -0,0 +1,57 @@ +$basis +* +o def-SV(P) +# o (7s4p1d) / [3s2p1d] {511/31/1} +* + 5 s + 2266.1767785 -0.53431809926E-02 + 340.87010191 -0.39890039230E-01 + 77.363135167 -0.17853911985 + 21.479644940 -0.46427684959 + 6.6589433124 -0.44309745172 + 1 s + 0.80975975668 1.0000000000 + 1 s + 0.25530772234 1.0000000000 + 3 p + 17.721504317 0.43394573193E-01 + 3.8635505440 0.23094120765 + 1.0480920883 0.51375311064 + 1 p + 0.27641544411 1.0000000000 + 1 d + 1.2000000000 1.0000000000 +* +c def-SV(P) +# c (7s4p1d) / [3s2p1d] {511/31/1} +* + 5 s + 1238.4016938 0.54568832082E-02 + 186.29004992 0.40638409211E-01 + 42.251176346 0.18025593888 + 11.676557932 0.46315121755 + 3.5930506482 0.44087173314 + 1 s + 0.40245147363 1.0000000000 + 1 s + 0.13090182668 1.0000000000 + 3 p + 9.4680970621 0.38387871728E-01 + 2.0103545142 0.21117025112 + 0.54771004707 0.51328172114 + 1 p + 0.15268613795 1.0000000000 + 1 d + 0.80000000000 1.0000000000 +* +h def-SV(P) +# h (4s) / [2s] {31} +* + 3 s + 13.010701000 0.19682158000E-01 + 1.9622572000 0.13796524000 + 0.44453796000 0.47831935000 + 1 s + 0.12194962000 1.0000000000 +* +$end diff --git a/turbomoleio/testfiles/outputs/generation/statpt/aceton_cartesian/TM_v7.5.1/control b/turbomoleio/testfiles/outputs/generation/statpt/aceton_cartesian/TM_v7.5.1/control new file mode 100644 index 0000000..180533e --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/statpt/aceton_cartesian/TM_v7.5.1/control @@ -0,0 +1,64 @@ +$title +dscf +$symmetry c1 +$user-defined bonds file=coord +$coord file=coord +$optimize + internal off + redundant off + cartesian on + global off + basis off +$atoms +o 1 \ + basis =o def-SV(P) +c 2-4 \ + basis =c def-SV(P) +h 5-10 \ + basis =h def-SV(P) +$basis file=basis +$scfmo file=mos +$closed shells + a 1-16 ( 2 ) +$scfiterlimit 200 +$thize 0.10000000E-04 +$thime 5 +$scfdamp start=0.300 step=0.050 min=0.100 +$scfdump +$scfintunit + unit=30 size=0 file=twoint +$scfdiis +$maxcor 500 MiB per_core +$scforbitalshift automatic=.1 +$drvopt + cartesian on + basis off + global off + hessian on + dipole on + nuclear polarizability +$interconversion off + qconv=1.d-7 + maxiter=25 +$coordinateupdate + dqmax=0.3 + interpolate on + statistics 5 +$forceupdate + ahlrichs numgeo=0 mingeo=3 maxgeo=4 modus= dynamic fail=0.3 + threig=0.005 reseig=0.005 thrbig=3.0 scale=1.00 damping=0.0 +$forceinit on + diag=default +$energy file=energy +$grad file=gradient +$forceapprox file=forceapprox +$dft + functional b-p + gridsize m3 +$scfconv 7 +$rundimensions + natoms=10 + nbf(CAO)=72 + nbf(AO)=68 +$last step define +$end diff --git a/turbomoleio/testfiles/outputs/generation/statpt/aceton_cartesian/TM_v7.5.1/coord b/turbomoleio/testfiles/outputs/generation/statpt/aceton_cartesian/TM_v7.5.1/coord new file mode 100644 index 0000000..98a7b9a --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/statpt/aceton_cartesian/TM_v7.5.1/coord @@ -0,0 +1,20 @@ +# RCS ################################################################ +# $Id: aceton,v 1.1 1992/04/14 14:49:59 chi Exp $ +# $Log: aceton,v $ +# Revision 1.1 1992/04/14 14:49:59 chi +# Initial revision +# +# RCS ################################################################ +$coord + 0.04340035000000 -2.43303953000000 0.00000000000000 o CO + 2.40289845000000 1.33092842000000 0.00000000000000 c CO + -2.44869437000000 1.25914649000000 0.00000000000000 c CH + -0.00810063000000 -0.18289217000000 0.00000000000000 c CH + 2.09020694000000 3.35088178000000 0.00000000000000 h CH + -4.02779836000000 -0.02916167000000 0.00000000000000 h CH + 3.51545227000000 0.83515949000000 1.64389798000000 h CH + 3.51545227000000 0.83515949000000 -1.64389798000000 h CH + -2.56998075000000 2.47145950000000 1.64993688000000 h CH + -2.56998075000000 2.47145950000000 -1.64993688000000 h CH +$user-defined bonds +$end diff --git a/turbomoleio/testfiles/outputs/generation/statpt/aceton_cartesian/control b/turbomoleio/testfiles/outputs/generation/statpt/aceton_cartesian/control index 180533e..b425ec0 100644 --- a/turbomoleio/testfiles/outputs/generation/statpt/aceton_cartesian/control +++ b/turbomoleio/testfiles/outputs/generation/statpt/aceton_cartesian/control @@ -1,5 +1,3 @@ -$title -dscf $symmetry c1 $user-defined bonds file=coord $coord file=coord @@ -18,8 +16,6 @@ h 5-10 \ basis =h def-SV(P) $basis file=basis $scfmo file=mos -$closed shells - a 1-16 ( 2 ) $scfiterlimit 200 $thize 0.10000000E-04 $thime 5 @@ -61,4 +57,8 @@ $rundimensions nbf(CAO)=72 nbf(AO)=68 $last step define +$title +dscf +$closed shells + a 1-16 ( 2 ) $end diff --git a/turbomoleio/testfiles/outputs/generation/statpt/h3cbr_internal/TM_v7.5.1/auxbasis b/turbomoleio/testfiles/outputs/generation/statpt/h3cbr_internal/TM_v7.5.1/auxbasis new file mode 100644 index 0000000..1951ca4 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/statpt/h3cbr_internal/TM_v7.5.1/auxbasis @@ -0,0 +1,93 @@ +$jbas +* +c def-SV(P) +# c (8s3p3d1f) / [6s3p3d1f] {311111/111/111/1} +* + 3 s + 459.70238600 0.43184479100 + 132.95779200 1.1181169600 + 41.565817000 2.7373541400 + 1 s + 13.915561000 1.9396315700 + 1 s + 4.9305290000 -0.42756388800E-02 + 1 s + 1.8229480000 0.30720805300E-01 + 1 s + 0.69205100000 0.52082846600 + 1 s + 0.26509300000 0.12487514200 + 1 p + 0.32784735795 0.53190985100E-01 + 1 p + 0.78683365909 0.13441968800E-02 + 1 p + 1.9710183160 0.22198600500E-01 + 1 d + 4.0133010000 0.52468412700E-01 + 1 d + 1.2475050000 0.80267825200E-01 + 1 d + 0.40814800000 0.29636167300E-01 + 1 f + 0.90000000000 1.0000000000 +* +h def-SV(P) +# h (4s2p) / [2s1p] {31/2} +* + 3 s + 9.3081300000 0.34466183000E-01 + 2.3067180000 0.12253379600 + 0.75201200000 0.18250021100 + 1 s + 0.27397800000 0.22150547900E-01 + 2 p + 2.0327040000 0.29513659100E-01 + 0.79025200000 0.32755872800E-01 +* +br def-SV(P) +# br (16s4p5d1f1g) / [6s4p2d1f1g] {*21111/1111/41/1/1} +* + 10 s + 30913.138639 2.9240025300 + 10271.903712 7.0592487200 + 3613.3629220 21.303200000 + 1344.0697570 38.703707500 + 527.84275700 25.772493100 + 218.41776900 -8.8049695400 + 94.991627000 20.502381000 + 43.289016000 29.276103600 + 20.596842000 -12.712771400 + 10.189127000 7.1433737600 + 2 s + 5.2157620000 11.041716000 + 2.7481040000 2.4440798100 + 1 s + 1.4816790000 -1.2280236800 + 1 s + 0.81239200000 1.1282209500 + 1 s + 0.44999900000 0.34099040100 + 1 s + 0.25011800000 0.28184906000 + 1 p + 5.2471928671 1.0000000000 + 1 p + 1.9661244256 1.0000000000 + 1 p + 0.79690516600 1.0000000000 + 1 p + 0.33204381910 1.0000000000 + 4 d + 7.9888740000 -0.55129157100E-01 + 3.3420080000 0.57880128200E-01 + 1.4571840000 -0.27826851600E-01 + 0.65190000000 -0.64904894000E-01 + 1 d + 0.29419300000 -0.19114318900E-01 + 1 f + 0.71050228310 1.0000000000 + 1 g + 0.77800000000 1.0000000000 +* +$end diff --git a/turbomoleio/testfiles/outputs/generation/statpt/h3cbr_internal/TM_v7.5.1/basis b/turbomoleio/testfiles/outputs/generation/statpt/h3cbr_internal/TM_v7.5.1/basis new file mode 100644 index 0000000..b50d0e1 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/statpt/h3cbr_internal/TM_v7.5.1/basis @@ -0,0 +1,81 @@ +$basis +* +c def-SV(P) +# c (7s4p1d) / [3s2p1d] {511/31/1} +* + 5 s + 1238.4016938 0.54568832082E-02 + 186.29004992 0.40638409211E-01 + 42.251176346 0.18025593888 + 11.676557932 0.46315121755 + 3.5930506482 0.44087173314 + 1 s + 0.40245147363 1.0000000000 + 1 s + 0.13090182668 1.0000000000 + 3 p + 9.4680970621 0.38387871728E-01 + 2.0103545142 0.21117025112 + 0.54771004707 0.51328172114 + 1 p + 0.15268613795 1.0000000000 + 1 d + 0.80000000000 1.0000000000 +* +h def-SV(P) +# h (4s) / [2s] {31} +* + 3 s + 13.010701000 0.19682158000E-01 + 1.9622572000 0.13796524000 + 0.44453796000 0.47831935000 + 1 s + 0.12194962000 1.0000000000 +* +br def-SV(P) +# br (14s10p6d) / [5s4p3d] {63311/5311/411} +* + 6 s + 113286.38776 0.14283037779E-02 + 17009.626303 0.10950417496E-01 + 3870.1842567 0.54421006604E-01 + 1093.0357227 0.19047907695 + 356.39721797 0.39024642737 + 123.12539643 0.30814432514 + 3 s + 236.74084007 -0.11228065671 + 28.468661070 0.64775962312 + 11.883443722 0.44235575986 + 3 s + 21.269633312 -0.22642576323 + 3.6129226841 0.73823712008 + 1.6626648969 0.42683868694 + 1 s + 0.34823793232 1.0000000000 + 1 s + 0.13019031394 1.0000000000 + 5 p + 1560.2801881 0.87166669072E-02 + 368.47859205 0.66243637420E-01 + 117.22978849 0.26495610385 + 42.648909248 0.53839160587 + 16.087225096 0.36579387888 + 3 p + 8.6352810058 0.34248787366 + 3.5613665502 0.57500678213 + 1.5292626609 0.24330394172 + 1 p + 0.53064294848 1.0000000000 + 1 p + 0.15702758965 1.0000000000 + 4 d + 104.85518642 0.22650147581E-01 + 30.281143688 0.13455483230 + 10.651394267 0.36474454537 + 3.8699456233 0.49044587056 + 1 d + 1.3240876762 0.27137289040 + 1 d + 0.38900000000 1.0000000000 +* +$end diff --git a/turbomoleio/testfiles/outputs/generation/statpt/h3cbr_internal/TM_v7.5.1/control b/turbomoleio/testfiles/outputs/generation/statpt/h3cbr_internal/TM_v7.5.1/control new file mode 100644 index 0000000..4e88f4d --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/statpt/h3cbr_internal/TM_v7.5.1/control @@ -0,0 +1,72 @@ +$title +ridft +$symmetry c3v +$redundant file=coord +$user-defined bonds file=coord +$coord file=coord +$optimize + internal on + redundant on + cartesian off + global off + basis off +$atoms +c 1 \ + basis =c def-SV(P) \ + jbas =c def-SV(P) +h 2-4 \ + basis =h def-SV(P) \ + jbas =h def-SV(P) +br 5 \ + basis =br def-SV(P) \ + jbas =br def-SV(P) +$basis file=basis +$scfmo file=mos +$closed shells + a1 1-10 ( 2 ) + e 1-6 ( 2 ) +$scfiterlimit 200 +$thize 0.10000000E-04 +$thime 5 +$scfdamp start=0.300 step=0.050 min=0.100 +$scfdump +$scfintunit + unit=30 size=0 file=twoint +$scfdiis +$maxcor 500 MiB per_core +$scforbitalshift automatic=.1 +$drvopt + cartesian on + basis off + global off + hessian on + dipole on + nuclear polarizability +$interconversion off + qconv=1.d-7 + maxiter=25 +$coordinateupdate + dqmax=0.3 + interpolate on + statistics 5 +$forceupdate + ahlrichs numgeo=0 mingeo=3 maxgeo=4 modus= dynamic fail=0.3 + threig=0.005 reseig=0.005 thrbig=3.0 scale=1.00 damping=0.0 +$forceinit on + diag=default +$energy file=energy +$grad file=gradient +$forceapprox file=forceapprox +$dft + functional b-p + gridsize m3 +$scfconv 7 +$ricore 500 +$rij +$jbas file=auxbasis +$rundimensions + natoms=5 + nbf(CAO)=56 + nbf(AO)=52 +$last step define +$end diff --git a/turbomoleio/testfiles/outputs/generation/statpt/h3cbr_internal/TM_v7.5.1/coord b/turbomoleio/testfiles/outputs/generation/statpt/h3cbr_internal/TM_v7.5.1/coord new file mode 100644 index 0000000..7b93e05 --- /dev/null +++ b/turbomoleio/testfiles/outputs/generation/statpt/h3cbr_internal/TM_v7.5.1/coord @@ -0,0 +1,29 @@ +$coord + 0.00000000000000 0.00000000000000 -0.34653371221582 c + 0.97212284572838 1.68376616000000 -0.98142627852278 h + 0.97212284572838 -1.68376616000000 -0.98142627852278 h + -1.94424569145676 0.00000000000000 -0.98142627852278 h + 0.00000000000000 0.00000000000000 3.29081254778418 br +$user-defined bonds +$redundant + number_of_atoms 5 + degrees_of_freedom 3 + internal_coordinates 3 + frozen_coordinates 0 +# definitions of redundant internals + 1 k 1.0000000000000 stre 1 5 val= 3.63735 + 2 k -0.3970112882625 bend 3 2 1 val= 1.60478 + -0.3970112882625 bend 4 2 1 + -0.3970112882625 bend 4 3 1 + 0.4191841723222 bend 5 2 1 + 0.4191841723222 bend 5 3 1 + 0.4191841723222 bend 5 4 1 + 3 k 1.0000000000000 stre 1 4 val= 2.04528 + 3 non zero eigenvalues of BmBt + 1 3.280806203 1 0 + 1 + 2 1.000000000 2 0 + 2 + 3 0.691117484 3 0 + 3 +$end diff --git a/turbomoleio/testfiles/outputs/generation/statpt/h3cbr_internal/control b/turbomoleio/testfiles/outputs/generation/statpt/h3cbr_internal/control index 4e88f4d..6c9abfa 100644 --- a/turbomoleio/testfiles/outputs/generation/statpt/h3cbr_internal/control +++ b/turbomoleio/testfiles/outputs/generation/statpt/h3cbr_internal/control @@ -1,5 +1,3 @@ -$title -ridft $symmetry c3v $redundant file=coord $user-defined bonds file=coord @@ -22,9 +20,6 @@ br 5 \ jbas =br def-SV(P) $basis file=basis $scfmo file=mos -$closed shells - a1 1-10 ( 2 ) - e 1-6 ( 2 ) $scfiterlimit 200 $thize 0.10000000E-04 $thime 5 @@ -69,4 +64,9 @@ $rundimensions nbf(CAO)=56 nbf(AO)=52 $last step define +$title +ridft +$closed shells + a1 1-10 ( 2 ) + e 1-6 ( 2 ) $end diff --git a/turbomoleio/testfiles/outputs/generation/statpt/h3cbr_internal/coord b/turbomoleio/testfiles/outputs/generation/statpt/h3cbr_internal/coord index 7b93e05..09252a0 100644 --- a/turbomoleio/testfiles/outputs/generation/statpt/h3cbr_internal/coord +++ b/turbomoleio/testfiles/outputs/generation/statpt/h3cbr_internal/coord @@ -1,9 +1,9 @@ $coord - 0.00000000000000 0.00000000000000 -0.34653371221582 c + -0.00000000000000 0.00000000000000 -0.34653371221582 c 0.97212284572838 1.68376616000000 -0.98142627852278 h 0.97212284572838 -1.68376616000000 -0.98142627852278 h -1.94424569145676 0.00000000000000 -0.98142627852278 h - 0.00000000000000 0.00000000000000 3.29081254778418 br + -0.00000000000000 0.00000000000000 3.29081254778418 br $user-defined bonds $redundant number_of_atoms 5 @@ -18,7 +18,7 @@ $redundant 0.4191841723222 bend 5 2 1 0.4191841723222 bend 5 3 1 0.4191841723222 bend 5 4 1 - 3 k 1.0000000000000 stre 1 4 val= 2.04528 + 3 k 1.0000000000000 stre 1 2 val= 2.04528 3 non zero eigenvalues of BmBt 1 3.280806203 1 0 1 diff --git a/turbomoleio/testfiles/outputs/generation/tests_config.yaml b/turbomoleio/testfiles/outputs/generation/tests_config.yaml index 38bb86a..bdd1557 100644 --- a/turbomoleio/testfiles/outputs/generation/tests_config.yaml +++ b/turbomoleio/testfiles/outputs/generation/tests_config.yaml @@ -25,6 +25,7 @@ testlist: - h2o_dscf_unconv2 - h2o_mp2_dscf_mpgrad - h2o_mp2_dscf_mpgrad_cosmo + - h2o_mp2_dscf_mpgrad_cosmo_nosym mpgrad: - h2o_std_mp2 - h2o_std_mp2_gradient diff --git a/turbomoleio/testfiles/utils.py b/turbomoleio/testfiles/utils.py index 66e20fd..0a85a5e 100644 --- a/turbomoleio/testfiles/utils.py +++ b/turbomoleio/testfiles/utils.py @@ -47,7 +47,7 @@ from turbomoleio.output.states import EigerRunner, States TESTDIR = os.path.split(__file__)[0] -TM_VERSIONS = ["TM_v7.3", "TM_v7.3.1", "TM_v7.4.1", "TM_v7.5.1"] +TM_VERSIONS = ["TM_v7.3", "TM_v7.3.1", "TM_v7.4.1", "TM_v7.5.1", "TM_v7.6"] TESTS_CONFIGS_TM_VERSIONS = { tmv: loadfn(os.path.join(TESTDIR, "outputs", tmv, "tests_config.yaml")) for tmv in TM_VERSIONS

7.5 series

7.6 series

1.4.x series

7.5 series

1.3.x series

7.4 series

7.4 series

1.2.x series

7.3 series

7.3 series

1.0.x and 1.1.x series