Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

MSP-workflow: outdate RMB_options.ini in example #305

Open
tsufz opened this issue Mar 16, 2022 · 0 comments
Open

MSP-workflow: outdate RMB_options.ini in example #305

tsufz opened this issue Mar 16, 2022 · 0 comments
Assignees

Comments

@tsufz
Copy link
Member

tsufz commented Mar 16, 2022

loadRmbSettings(system.file('msp_examples/RMB_options.ini', package="RMassBankData"))
Warning messages:
1: In loadRmbSettings(system.file("msp_examples/RMB_options.ini", package = "RMassBankData")) :
Your settings are outdated. Missing will be replaced by default values.
2: In updateSettings(o) :
Your settings are outdated! The following fields were taken from default values: spectraList, electronicNoise

R version 4.1.2 (2021-11-01)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 19044)

Matrix products: default

locale:
[1] LC_COLLATE=English_United Kingdom.1252 LC_CTYPE=English_United Kingdom.1252 LC_MONETARY=English_United Kingdom.1252
[4] LC_NUMERIC=C LC_TIME=English_United Kingdom.1252
system code page: 65001

attached base packages:
[1] stats graphics grDevices utils datasets methods base

other attached packages:
[1] RMassBank_3.3.2 Rcpp_1.0.8

loaded via a namespace (and not attached):
[1] lattice_0.20-45 png_0.1-7 assertthat_0.2.1 digest_0.6.29 foreach_1.5.2 utf8_1.2.2
[7] R6_2.5.1 plyr_1.8.6 mzID_1.32.0 stats4_4.1.2 httr_1.4.2 ggplot2_3.3.5
[13] pillar_1.7.0 itertools_0.1-3 zlibbioc_1.40.0 rlang_1.0.1 curl_4.3.2 S4Vectors_0.32.3
[19] preprocessCore_1.56.0 mzR_2.28.0 BiocParallel_1.28.3 ProtGenerics_1.26.0 fingerprint_3.5.7 RCurl_1.98-1.6
[25] munsell_0.5.0 compiler_4.1.2 pkgconfig_2.0.3 BiocGenerics_0.40.0 pcaMethods_1.86.0 tidyselect_1.1.2
[31] tibble_3.1.6 IRanges_2.28.0 codetools_0.2-18 XML_3.99-0.8 fansi_1.0.2 crayon_1.5.0
[37] dplyr_1.0.8 MASS_7.3-55 bitops_1.0-7 grid_4.1.2 gtable_0.3.0 lifecycle_1.0.1
[43] affy_1.72.0 DBI_1.1.2 magrittr_2.0.2 MsCoreUtils_1.6.1 rcdk_3.6.0 scales_1.1.1
[49] ncdf4_1.19 cli_3.2.0 impute_1.68.0 affyio_1.64.0 doParallel_1.0.17 limma_3.50.1
[55] logger_0.2.2 ellipsis_0.3.2 generics_0.1.2 vctrs_0.3.8 rjson_0.2.21 iterators_1.0.14
[61] tools_4.1.2 Biobase_2.54.0 MSnbase_2.20.4 glue_1.6.1 purrr_0.3.4 rcdklibs_2.3
[67] yaml_2.3.5 parallel_4.1.2 clue_0.3-60 colorspace_2.0-3 cluster_2.1.2 BiocManager_1.30.16
[73] vsn_3.62.0 MALDIquant_1.21 rJava_1.0-6

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant