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Image analysis using Python using with Fiji libraries.

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Biological image analysis using Python with ImageIO, NumPy, SciPy, and matplotlib libraries:

  • First chapter introduces how to load 2D and 3D images, some advanced plotting methods, slicing 3D images.
  • Second chapter is devoted to the masks and filters. Here we learn how to explore patterns to select sub-areas of an image and how to use filters to detect features.
  • Third chapter is about image segmentation, object labeling, and morphological measurement.
  • Final chapter discusses basics of registration, resampling, and image comparison.

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Image analysis using Python using with Fiji libraries.

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