From fe47635cb6abbb115c07c3011f2b1b0da2649921 Mon Sep 17 00:00:00 2001 From: Simone Maestri Date: Wed, 18 Dec 2019 08:47:41 +0100 Subject: [PATCH] Update Calculate_mapping_rate.sh --- Calculate_mapping_rate.sh | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/Calculate_mapping_rate.sh b/Calculate_mapping_rate.sh index 6e037ee..a229de2 100644 --- a/Calculate_mapping_rate.sh +++ b/Calculate_mapping_rate.sh @@ -20,8 +20,8 @@ READS=$1 DRAFT_READS=$2 CONTIG=$3 -MINIMAP2=minimap2 #specify full path if you want to use a version of the program which is not in your PATH -SAMTOOLS=samtools #specify full path if you want to use a version of the program which is not in your PATH +MINIMAP2=minimap2 #specify full path if you want to use a version of the program that is not in your PATH +SAMTOOLS=samtools #specify full path if you want to use a version of the program that is not in your PATH wdir=$(realpath $(pwd)) reads_full=$wdir"/"$READS