diff --git a/README.md b/README.md index f9dbf69..f38d8e0 100644 --- a/README.md +++ b/README.md @@ -215,7 +215,8 @@ The **MetatONTrack.sh** script reproduces what the EPI2ME 16S workflow does, bla Usage: MetatONTrack.sh \ \ -Note: set _BLASTN_, _SEQTK_ and _DB_ variables to blastn, seqtk executables and to an NCBI Blast-indexed database respectively inside the script; if using NCBI nt database, change _cut -d" " -f2,3_ (line 47) and _cut -d" " -f2_ (line 48) to _cut -d" " -f1,2_ and _cut -d" " -f1_ respectively +Note: Activate the virtual environment with ```source activate ONTrack_env``` before running. +Set _DB_ variable to an NCBI Blast-indexed database inside the script; if using NCBI nt database, change _cut -d" " -f2,3_ (line 47) and _cut -d" " -f2_ (line 48) to _cut -d" " -f1,2_ and _cut -d" " -f1_ respectively Inputs: * \: MinION fastq reads from a meta-barcoding experiment