diff --git a/Dockerfile b/Dockerfile index 1dc90e6..d36b371 100644 --- a/Dockerfile +++ b/Dockerfile @@ -34,7 +34,8 @@ conda config --add channels anaconda && \ conda config --add channels r && \ conda config --add channels conda-forge RUN conda create -n ONTrack_env -c bioconda bioconductor-biostrings -RUN conda install -n ONTrack_env python blast emboss vsearch seqtk mafft minimap2 samtools=1.15 nanopolish bedtools ncurses +RUN conda install -n ONTrack_env python blast emboss vsearch seqtk mafft minimap2 samtools=1.15 nanopolish bedtools ncurses ont_vbz_hdf_plugin +RUN export HDF5_PLUGIN_PATH=/opt/conda/envs/ONTrack_env/hdf5/lib/plugin RUN /opt/conda/envs/ONTrack_env/bin/pip install pycoQC WORKDIR /home/