From 3656ff1977a2455b26a5fb93348dcd7f73bb7433 Mon Sep 17 00:00:00 2001 From: Simone Maestri Date: Wed, 18 Dec 2019 08:47:24 +0100 Subject: [PATCH] Update Sanger_check.sh --- Sanger_check.sh | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Sanger_check.sh b/Sanger_check.sh index 3b8aaa3..486c1ee 100644 --- a/Sanger_check.sh +++ b/Sanger_check.sh @@ -21,7 +21,7 @@ CONTIGS_DIR=$1 SANGER_DIR=$2 -BLASTN=blastn #specify full path if you want to use a version of the program which is not in your PATH +BLASTN=blastn #specify full path if you want to use a version of the program that is not in your PATH contigs_files=$(find $CONTIGS_DIR -maxdepth 1 | grep "\\.contigs\\.fasta") sanger_files=$(find $SANGER_DIR -maxdepth 1 | grep "reference.*\\.fasta")