diff --git a/Sanger_check.sh b/Sanger_check.sh index 3b8aaa3..486c1ee 100644 --- a/Sanger_check.sh +++ b/Sanger_check.sh @@ -21,7 +21,7 @@ CONTIGS_DIR=$1 SANGER_DIR=$2 -BLASTN=blastn #specify full path if you want to use a version of the program which is not in your PATH +BLASTN=blastn #specify full path if you want to use a version of the program that is not in your PATH contigs_files=$(find $CONTIGS_DIR -maxdepth 1 | grep "\\.contigs\\.fasta") sanger_files=$(find $SANGER_DIR -maxdepth 1 | grep "reference.*\\.fasta")