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CellProfiler image mirror from https://hub.docker.com/r/cellprofiler/cellprofiler

cf. Github repository: https://github.com/CellProfiler/CellProfiler

Hosted on GitHub Container Registry (ghcr.io) to avoid DockerHub pull limitations, and easily deploy on clusters (such as Kubernetes).

Adapted from https://github.com/seunadeks/cellprofiler

Automatically updated

Publish Docker image

The image on ghcr.io is automatically updated every week (Monday at 3:00 GMT+1) by a GitHub Actions workflow to match the latest tag of cellprofiler

Run

docker run -it -v $(pwd):/root ghcr.io/maastrichtu-library/cellprofiler:latest

In the container:

  • User, with sudo privileges: root
  • Workspace path: /root

Set entrypoint to tail -f /dev/null to keep it hanging as a service.

docker run -it --entrypoint tail -v $(pwd):/root ghcr.io/maastrichtu-library/cellprofiler:latest -f /dev/null

Build

Feel free to edit the Dockerfile to install additional packages in the image.

docker build -t ghcr.io/maastrichtu-library/cellprofiler:latest .

Push

docker push ghcr.io/maastrichtu-library/cellprofiler:latest