From 3eaa67752ba0a29057baf817de4f4650651233f0 Mon Sep 17 00:00:00 2001 From: Michel Dumontier Date: Thu, 23 Apr 2015 14:22:02 -0700 Subject: [PATCH] moving to semantic version number; 1.17.0 --- ontology/sio.owl | 2 +- ontology/sio/release/sio-release.owl | 6798 +++++++------- ontology/sio/release/sio-subset-behaviour.owl | 360 +- .../sio/release/sio-subset-capability.owl | 470 +- ontology/sio/release/sio-subset-chemical.owl | 613 +- ontology/sio/release/sio-subset-core.owl | 362 +- ontology/sio/release/sio-subset-emotion.owl | 190 +- ontology/sio/release/sio-subset-equivs.owl | 6748 +++++++------- ontology/sio/release/sio-subset-geometry.owl | 140 +- ontology/sio/release/sio-subset-ice.owl | 1227 +-- ontology/sio/release/sio-subset-labels.owl | 8116 +++++++++-------- ontology/sio/release/sio-subset-math.owl | 399 +- ontology/sio/release/sio-subset-nlp.owl | 510 +- ontology/sio/release/sio-subset-ovopub.owl | 16 +- ontology/sio/release/sio-subset-process.owl | 994 +- ontology/sio/release/sio-subset-relations.owl | 990 +- ontology/sio/release/sio-subset-sadi.owl | 34 +- 17 files changed, 14049 insertions(+), 13920 deletions(-) diff --git a/ontology/sio.owl b/ontology/sio.owl index d81a1612..58ce6edd 100644 --- a/ontology/sio.owl +++ b/ontology/sio.owl @@ -30,7 +30,7 @@ xmlns:foaf="http://xmlns.com/foaf/0.1/" xmlns:dc="http://purl.org/dc/terms/"> - 1.0.16 + 1.17.0 http://creativecommons.org/licenses/by/4.0/ http://orcid.org/0000-0003-4727-9435 http://semanticscience.org/resource/ diff --git a/ontology/sio/release/sio-release.owl b/ontology/sio/release/sio-release.owl index d2d4bb55..3d9fea28 100644 --- a/ontology/sio/release/sio-release.owl +++ b/ontology/sio/release/sio-release.owl @@ -11,15 +11,15 @@ - 1.0.16 + 1.17.0 http://creativecommons.org/licenses/by/4.0/ http://orcid.org/0000-0003-4727-9435 Michel Dumontier http://semanticscience.org/resource/ http://sio.semanticscience.org http://www.jbiomedsem.com/content/5/1/14 + Semanticscience Integrated Ontology (SIO) en - free to use,share,modify. modify with attribution [http://creativecommons.org/licenses/by/4.0/]. Contributors are those that engage in discussions in the context of SIO (in alphabetical order): christopher baker joachim baran @@ -47,7 +47,6 @@ robert stevens mark wilkinson karin verspoor natalia villanueva-rosales - Semanticscience Integrated Ontology (SIO) The semanticscience integrated ontology (SIO) provides a simple, integrated ontology (types, relations) for objects, processes and their attributes. This project provides foundational support for the Bio2RDF (http://bio2rdf.org) and SADI (http://sadiframework.org) projects. @@ -56,6 +55,7 @@ website: http://semanticscience.org email: sio-ontology@googlegroups.com mailing list: http://groups.google.com/group/sio-ontology + free to use,share,modify. modify with attribution [http://creativecommons.org/licenses/by/4.0/]. general class inclusion axioms: 'is part of' some 'physical entity' subClassOf 'is located in' some 'physical entity' @@ -64,7 +64,8 @@ role chains: sio sio.owl - + + 2015-04-23T23:20:46+0200 @@ -180,10 +181,10 @@ role chains: is related to - A is related to B iff there is some relation between A and B. - core relations+ + core 'is related to' is the top level relation in SIO + A is related to B iff there is some relation between A and B. SIO_000001 @@ -290,8 +291,8 @@ role chains: is located in A is located in B iff the spatial region occupied by A is part of the spatial region occupied by B. [T][R] A parasite in the interior of a person's intestine is located in their intestinal lumen. - OBO_REL:located_in core + OBO_REL:located_in SIO_000061 @@ -346,8 +347,8 @@ role chains: is part of - core OBO_REL:part_of + core is part of is a transitive, reflexive and anti-symmetric mereological relation between a whole and itself or a part and its whole. SIO_000068 @@ -391,9 +392,9 @@ role chains: is contained in - core - OBO_REL:contained_in A is contained in B iff the spatial region occupied by A is part of the spatial region occupied by B and A is not part of B. [T] + OBO_REL:contained_in + core SIO_000128 @@ -403,8 +404,8 @@ role chains: has participant - OBO_REL:has_participant core + OBO_REL:has_participant has participant is a relation that describes the participation of the object in the (processual) subject. @@ -415,9 +416,9 @@ role chains: has agent - OBO_REL:has_agent core sadi + OBO_REL:has_agent has agent is a relation between a process and an entity, where the entity is present throughout the process and is a causal participant in the process. @@ -429,8 +430,8 @@ role chains: is location of - nlp+ A is location of B iff the spatial region occupied by A has the spatial region occupied by B as a part. [T][R] + nlp+ SIO_000145 @@ -451,8 +452,8 @@ role chains: is connected to - core nlp + core A is connected to B iff there exists a fiat, material or temporal path between A and B. [S][T] SIO_000203 @@ -848,9 +849,9 @@ role chains: is derived from - OBO_REL:derives_from core A transitive temporal relation in which one entity was materially formed from another non-identical entity. + OBO_REL:derives_from SIO_000244 @@ -863,8 +864,8 @@ role chains: a derives to b if and only if a or some part thereof is consumed in the formation of b. - + SIO_000245 @@ -892,8 +893,8 @@ role chains: precedes - core A transitive, temporal relation in which one process precedes (has occured earlier than) another process. + core SIO_000248 @@ -1050,8 +1051,8 @@ role chains: is covalently connected to (transitive) - + SIO_000288 @@ -1083,60 +1084,60 @@ role chains: is weakly interacting with (transitive) is weakly interacting with is a symmetric relation between two molecular entities (or any part thereof) that are interacting through some weak force (van der waals, hydrogen bonds, electrostatic interactions) - - + + SIO_000293 - + - - :arce738b1 + + :arc8c98b1 - + - - :arce738b2 + + :arc8c98b2 - - + + - :arce738b4 + :arc8c98b4 - + - :arce738b3 + :arc8c98b3 - + - - :arce738b5 + + :arc8c98b5 - + - - :arce738b6 + + :arc8c98b6 - - + + - :arce738b8 + :arc8c98b8 - + - :arce738b7 + :arc8c98b7 @@ -1229,21 +1230,21 @@ role chains: overlaps with A overlaps with B iff there is some C that is part of both A and B. [S][R] - + SIO_000325 - + - - :arce738b9 + + :arc8c98b9 - + - :arce738b10 + :arc8c98b10 @@ -1311,8 +1312,8 @@ role chains: is causally related from - a is causally related from b iff there is a causal chain of events from b to a core + a is causally related from b iff there is a causal chain of events from b to a SIO_000352 @@ -1414,10 +1415,10 @@ role chains: is broader than (t) - A is broader than B (t) iff for A is broader than B. http://www.w3.org/2004/02/skos/core#narrowerTransitive - + A is broader than B (t) iff for A is broader than B. + SIO_000422 @@ -1430,8 +1431,8 @@ role chains: is narrower than (t) http://www.w3.org/2004/02/skos/core#broaderTransitive A is narrower than B (t) iff for A is narrower than B. - + SIO_000424 @@ -1457,8 +1458,8 @@ role chains: is narrower than - http://www.w3.org/2004/02/skos/core#broader A is narrower than B iff the meaning of term A is narrower in scope than the meaning of term B + http://www.w3.org/2004/02/skos/core#broader SIO_000427 @@ -1615,8 +1616,8 @@ role chains: refers to - nlp+ core + nlp+ refers to is a relation between one entity and the entity that it makes reference to. @@ -1830,8 +1831,8 @@ role chains: is identifier for - identifies a relation between an identifier and an entity. + identifies SIO_000672 @@ -2308,8 +2309,8 @@ role chains: is data item in - 'is data item in' is a relation between an entity that is described or referenced in a dataset. core + 'is data item in' is a relation between an entity that is described or referenced in a dataset. SIO_001278 @@ -2342,98 +2343,98 @@ role chains: an open reading frame encodes a protein (it contains information that specifies the amino acid composition and topology) - - + + SIO_010078 - + - - :arce738b11 + + :arc8c98b11 - + - - :arce738b12 + + :arc8c98b12 - - + + - :arce738b14 + :arc8c98b14 - + - :arce738b13 + :arc8c98b13 - + - - :arce738b15 + + :arc8c98b15 - + - - :arce738b16 + + :arc8c98b16 - + - - :arce738b17 + + :arc8c98b17 - + - - :arce738b18 + + :arc8c98b18 - - - - :arce738b20 + + + + :arc8c98b20 - + - :arce738b19 + :arc8c98b19 - - - - :arce738b22 + + + + :arc8c98b22 - + - :arce738b21 + :arc8c98b21 - - + + - :arce738b24 + :arc8c98b24 - + - :arce738b23 + :arc8c98b23 @@ -2451,60 +2452,60 @@ role chains: DNA is transcribed into RNA a relation between two information content entities in which one is transcribed into (an exact or similar kind) another through some process. - - + + SIO_010080 - + - - :arce738b25 + + :arc8c98b25 - + - - :arce738b26 + + :arc8c98b26 - - + + - :arce738b28 + :arc8c98b28 - + - :arce738b27 + :arc8c98b27 - + - - :arce738b29 + + :arc8c98b29 - + - - :arce738b30 + + :arc8c98b30 - - + + - :arce738b32 + :arc8c98b32 - + - :arce738b31 + :arc8c98b31 @@ -2512,60 +2513,60 @@ role chains: is transcribed from - - + + SIO_010081 - + - - :arce738b33 + + :arc8c98b33 - - - - :arce738b34 + + + + :arc8c98b34 - - + + - :arce738b36 + :arc8c98b36 - + - - :arce738b35 + + :arc8c98b35 - + - - :arce738b37 + + :arc8c98b37 - - - - :arce738b38 + + + + :arc8c98b38 - - + + - :arce738b40 + :arc8c98b40 - + - - :arce738b39 + + :arc8c98b39 @@ -2575,34 +2576,34 @@ role chains: a relation between two information content entities in which one is translated into (a completely different kind of entity) another through some process. - + SIO_010082 - + - - :arce738b41 + + :arc8c98b41 - + - - :arce738b42 + + :arc8c98b42 - - + + - :arce738b44 + :arc8c98b44 - + - :arce738b43 + :arc8c98b43 @@ -2610,34 +2611,34 @@ role chains: is translated from - + SIO_010083 - + - - :arce738b45 + + :arc8c98b45 - + - - :arce738b46 + + :arc8c98b46 - - + + - :arce738b48 + :arc8c98b48 - + - :arce738b47 + :arc8c98b47 @@ -2655,8 +2656,8 @@ role chains: has value nlp - relations core + relations sadi A relation between a informational entity and its actual value (numeric, date, text, etc). SIO_000300 @@ -2676,51 +2677,51 @@ role chains: material entity - - + + core A material entity is a physical entity that is spatially extended, exists as a whole at any point in time and has mass. SIO_000004 - + - - :arce738b49 + + :arc8c98b49 - + - - :arce738b50 + + :arc8c98b50 - + - - :arce738b51 + + :arc8c98b51 - + - :arce738b52 + :arc8c98b52 - + - :arce738b53 + :arc8c98b53 quality - + core A quality is an attribute that is intrinsically associated with its bearer (or its parts), but whose presence/absence and observed/measured value may vary. @@ -2728,38 +2729,38 @@ role chains: - + - :arce738b54 + :arc8c98b54 process - - - process+ - core + + A process is an entity that is identifiable only through the unfolding of time, has temporal parts, and unless otherwise specified/predicted, cannot be identified from any instant of time in which it exists. + core + process+ SIO_000006 - + - :arce738b55 + :arc8c98b55 - + - :arce738b56 + :arc8c98b56 @@ -2775,17 +2776,17 @@ role chains: social structure - + A social structure is a social entity which consists of relationships between two or more entities. SIO_000010 - + - :arce738b57 + :arc8c98b57 @@ -2810,26 +2811,26 @@ role chains: disposition - - core + A disposition is the tendency of a capability to be exhibited under certain conditions or in response to a certain stimulus (trigger). + core solubility (to dissolve when put in fluid); fragility (disposition to break when dropped) SIO_000014 - + - :arce738b58 + :arc8c98b58 information content entity - + ice+ core information content entity is an object that requires some background knowledge or procedure to correctly interpret. @@ -2837,19 +2838,19 @@ role chains: - + - :arce738b59 + :arc8c98b59 role - A role is a realizable entity that describes behaviours, rights and obligations of an entity in some particular circumstance. core + A role is a realizable entity that describes behaviours, rights and obligations of an entity in some particular circumstance. SIO_000016 @@ -2879,110 +2880,110 @@ role chains: material boundary - + A material boundary is the boundary of a material entity which exists as a lower dimensional entity at exactly the location where its parts no longer extend into space. Every material entity has a boundary, and a boundary is the boundary of exactly 1 material entity. the external surface of the window; the surface of the p52 protein SIO_000022 - + - :arce738b60 + :arc8c98b60 object quality - + An object quality is quality of an object. SIO_000026 - + - :arce738b61 + :arc8c98b61 process quality - + A process quality is quality that is associated with a process. SIO_000027 - + - :arce738b62 + :arc8c98b62 biopolymer sequence - - - + + + A sequence is a primary structure descriptor in which each of the letters in the string represents a monomeric unit (residue) in which adjacent letters represent the connectivity between the monomeric units. SIO_000030 - + - - :arce738b63 + + :arc8c98b63 - + - - :arce738b64 + + :arc8c98b64 - + - - :arce738b65 + + :arc8c98b65 - - + + - :arce738b67 + :arc8c98b67 - + - :arce738b66 + :arc8c98b66 - + - :arce738b68 + :arc8c98b68 - + - :arce738b69 + :arc8c98b69 @@ -3007,17 +3008,17 @@ role chains: process status - + process status is a process quality that describes the state of a process. SIO_000033 - + - :arce738b70 + :arc8c98b70 @@ -3051,26 +3052,26 @@ role chains: spatial quantity - - + + A spatial quantity is a quantity obtained from measuring the spatial extent of an entity physical dimensional quantity SIO_000037 - + - - - :arce738b71 + + + :arc8c98b71 - + - - - :arce738b72 + + + :arc8c98b72 @@ -3193,45 +3194,45 @@ role chains: quantity - + - - + + A quantity is an informational entity that gives the magnitude of a property. SIO_000052 - + - - :arce738b73 + + :arc8c98b73 - + - - :arce738b74 + + :arc8c98b74 - + - :arce738b75 + :arc8c98b75 - + - :arce738b76 + :arc8c98b76 - + - :arce738b77 + :arc8c98b77 @@ -3247,17 +3248,17 @@ role chains: position - + A measurement of a spatial location relative to a frame of reference or other objects. SIO_000056 - + - :arce738b78 + :arc8c98b78 @@ -3273,127 +3274,127 @@ role chains: namespace - + A namespace is an informational entity that defines a logical container for a set of symbols or identifiers. SIO_000067 - + - :arce738b79 + :arc8c98b79 data item - + A data item consists of information that has been collected/generated towards some purpose. SIO_000069 - + - - :arce738b80 + + :arc8c98b80 - + - - :arce738b81 + + :arc8c98b81 - + - - :arce738b82 + + :arc8c98b82 - - + + - :arce738b84 + :arc8c98b84 - + - :arce738b83 + :arc8c98b83 measurement value - + A measurement value is a quantitative description that reflects the magnitude of some attribute. SIO_000070 - + - - :arce738b85 + + :arc8c98b85 - - - - :arce738b87 + + + + :arc8c98b87 - + - :arce738b86 + :arc8c98b86 - - - - :arce738b89 + + + + :arc8c98b89 - + - :arce738b88 + :arc8c98b88 - - - - :arce738b91 + + + + :arc8c98b91 - + - :arce738b90 + :arc8c98b90 - - + + - :arce738b93 + :arc8c98b93 - + - :arce738b92 + :arc8c98b92 @@ -3409,35 +3410,35 @@ role chains: cartesian coordinate - + A Cartesian coordinate is the signed distance of a point to some referent line. SIO_000072 - + - :arce738b94 + :arc8c98b94 polar coordinate - + A polar coordinate is a position characterized by a distance from a fixed point and an angle from a fixed direction. SIO_000073 - + - :arce738b95 + :arc8c98b95 @@ -3453,8 +3454,8 @@ role chains: mathematical entity - math+ A mathematical entity is an information content entity that are components of a mathematical system or can be defined in mathematical terms. + math+ SIO_000075 @@ -3481,18 +3482,18 @@ role chains: language entity - - A language entity implements some language specification for the visual interpretation and is part of some document. + nlp+ + A language entity implements some language specification for the visual interpretation and is part of some document. SIO_000078 - + - :arce738b96 + :arc8c98b96 @@ -3567,165 +3568,165 @@ role chains: record - + A record is a document containing a collection of statements about some entity. SIO_000088 - + - :arce738b97 + :arc8c98b97 data set - + A dataset is a data item that is a collection of data items. SIO_000089 - + - - :arce738b98 + + :arc8c98b98 - + - - :arce738b99 + + :arc8c98b99 - - + + - :arce738b101 + :arc8c98b101 - + - :arce738b100 + :arc8c98b100 specification - - - + + + A specification is a description of the essential technical attributes/requirements for an object or procedure, and may be used to determine that the object / procedure meets its requirements/attributes. SIO_000090 - + - - - :arce738b102 + + + :arc8c98b102 - + - - - :arce738b103 + + + :arc8c98b103 - + - :arce738b104 + :arc8c98b104 action specification - - - - An action specification is a specification composed of a sequence of instructions to achieve some objective. + + + effective specification + An action specification is a specification composed of a sequence of instructions to achieve some objective. SIO_000091 - + + + + + :arc8c98b105 + + + - :arce738b105 + :arc8c98b106 - + - :arce738b106 - - - - - - - :arce738b107 + :arc8c98b107 biopolymer - + A biopolymer is an organic polymer using biological components. SIO_000092 - + - - :arce738b108 + + :arc8c98b108 - + - - :arce738b109 + + :arc8c98b109 - + - - :arce738b110 + + :arc8c98b110 - + - - :arce738b111 + + :arc8c98b111 - + - - :arce738b112 + + :arc8c98b112 - + - :arce738b113 + :arc8c98b113 @@ -3813,25 +3814,25 @@ role chains: symbol - - + + A symbol is a proposition about what an entity represents. SIO_000105 - + - :arce738b114 + :arc8c98b114 - + - :arce738b115 + :arc8c98b115 @@ -3874,101 +3875,101 @@ role chains: paragraph - + A paragraph is a self-contained unit of written discourse consisting of one or more sentences. SIO_000110 - + - :arce738b116 + :arc8c98b116 document section - + A document section is a component of a document. SIO_000111 - + - :arce738b117 + :arc8c98b117 capability - - - - capability+ - core + + + A capability is a realizable entity whose basis lies in one or more parts or qualities and reflects possility of an entity to act in a specified way under certain conditions or in response to a certain stimulus (trigger). + core + capability+ SIO_000112 - + + + + + :arc8c98b118 + + + + + + + :arc8c98b119 + + + - - :arce738b118 + + :arc8c98b120 - + - - :arce738b119 + + :arc8c98b121 - + - - :arce738b120 + + :arc8c98b122 - + - - :arce738b121 + + :arc8c98b123 - - + + - :arce738b123 + :arc8c98b125 - + true - :arce738b122 - - - - - - - :arce738b124 - - - - - - - :arce738b125 + :arc8c98b124 @@ -3984,59 +3985,59 @@ role chains: word - - + + A word is the smallest free form (an item that may be expressed in isolation with semantic or pragmatic content) in a language. SIO_000114 - + - - - :arce738b126 + + + :arc8c98b126 - + - - - :arce738b127 + + + :arc8c98b127 identifier - + An identifier is a label that specifically refers to (identifies) an entity (instance/type). SIO_000115 - + - :arce738b128 + :arc8c98b128 name - + A name is a label used to identify an entity. SIO_000116 - + - :arce738b129 + :arc8c98b129 @@ -4079,8 +4080,8 @@ role chains: magazine - http://purl.org/ontology/bibo/Magazine A magazine is a periodical that typically contains essays, stories, poems, etc., by many writers, and often photographs and drawings, frequently specializing in a particular subject or area, as hobbies, news, or sports. + http://purl.org/ontology/bibo/Magazine SIO_000121 @@ -4088,158 +4089,158 @@ role chains: synonym - + A synonym is a word with the same or very similar meanings. SIO_000122 - + - - :arce738b130 + + :arc8c98b130 - + - - :arce738b131 + + :arc8c98b131 - - + + - :arce738b133 + :arc8c98b133 - + - :arce738b132 + :arc8c98b132 antonym - + An antonym is a word with opposite or nearly opposite meaning. SIO_000123 - + - - :arce738b134 + + :arc8c98b134 - + - - :arce738b135 + + :arc8c98b135 - - + + - :arce738b137 + :arc8c98b137 - + - :arce738b136 + :arc8c98b136 hypernym - + A hypernym is a term with a broader meaning. SIO_000124 - + - - :arce738b138 + + :arc8c98b138 - + - - :arce738b139 + + :arc8c98b139 - - + + - :arce738b141 + :arc8c98b141 - + - :arce738b140 + :arc8c98b140 hyponym - + A hyponym is a term with a narrower meaning. SIO_000125 - + - - :arce738b142 + + :arc8c98b142 - + - - :arce738b143 + + :arc8c98b143 - - + + - :arce738b145 + :arc8c98b145 - + - :arce738b144 + :arc8c98b144 homonym - + A homonym is a word that sounds the same but has different meaning. SIO_000126 - + - :arce738b146 + :arc8c98b146 @@ -4301,17 +4302,17 @@ role chains: description - + A description is language entity in which elements of a language (formal or natural) are used to characterize an entity. SIO_000136 - + - :arce738b147 + :arc8c98b147 @@ -4382,17 +4383,17 @@ role chains: monomer - + A monomer is a submolecule that is proper part of some polymer, and is a building block for such polymer. SIO_000146 - + - :arce738b148 + :arc8c98b148 @@ -4417,17 +4418,17 @@ role chains: list - + A list is any enumeration of a set of items. SIO_000150 - + - :arce738b149 + :arc8c98b149 @@ -4726,8 +4727,8 @@ role chains: personal name - full name A personal name is a name to identify an individual person and usually comprises of a first name and a last name. + full name SIO_000183 @@ -4925,108 +4926,108 @@ role chains: proposition - - + + A proposition is a sentence expressing something true or false. SIO_000256 - + - - - :arce738b150 + + + :arc8c98b150 - + - - - :arce738b151 + + + :arc8c98b151 dimensionless quantity - + A dimensionless quantity is a quantity that has no associated unit. SIO_000257 - + - - :arce738b152 + + :arc8c98b152 - + - :arce738b153 + :arc8c98b153 dimensional quantity - + A dimensional quantity is a quantity that has an associated unit. SIO_000258 - + - :arce738b154 + :arc8c98b154 argument - + An argument is a set of one or more declarative sentences (or propositions) known as the premises along with another declarative sentence (or proposition) known as the conclusion. SIO_000259 - + - - :arce738b155 + + :arc8c98b155 - - - - :arce738b157 + + + + :arc8c98b157 - + - :arce738b156 + :arc8c98b156 - - + + - :arce738b159 + :arc8c98b159 - + - :arce738b158 + :arc8c98b158 @@ -5069,225 +5070,225 @@ role chains: sound argument - + A sound argument is a valid argument with true premises. SIO_000265 - + - - :arce738b160 + + :arc8c98b160 - + - - :arce738b161 + + :arc8c98b161 - + - - :arce738b162 + + :arc8c98b162 - - + + - :arce738b164 + :arc8c98b164 - + - :arce738b163 + :arc8c98b163 valid argument - + A valid argument is an argument where the truth of the conclusion is a logical consequence of the premises and (consequently) its corresponding conditional is a necessary truth. SIO_000266 - + - - :arce738b165 + + :arc8c98b165 - + - - :arce738b166 + + :arc8c98b166 - + - - :arce738b167 + + :arc8c98b167 - - + + - :arce738b169 + :arc8c98b169 - + - :arce738b168 + :arc8c98b168 invalid argument - + An invalid argument is an argument where the truth of the conclusion is false because it is not a logical consequence of the premises. SIO_000267 - + - - :arce738b170 + + :arc8c98b170 - + - - :arce738b171 + + :arc8c98b171 - + - - :arce738b172 + + :arc8c98b172 - - + + - :arce738b174 + :arc8c98b174 - + - :arce738b173 + :arc8c98b173 truth value - + truth value is a quality of information that is claimed/verified to be true or false. SIO_000268 - + - - :arce738b175 + + :arc8c98b175 - + - - :arce738b176 + + :arc8c98b176 - + - :arce738b177 + :arc8c98b177 true - + true is a truth value that indicates that it holds under all possible worlds. SIO_000269 - + true - :arce738b178 + :arc8c98b178 false - + false is a truth value in that indicates that it is not true. SIO_000270 - + false - :arce738b179 + :arc8c98b179 term - + A term is a word or phrase used to denote one or more entities. SIO_000275 - + - - :arce738b180 + + :arc8c98b180 - + - - :arce738b181 + + :arc8c98b181 - + - :arce738b182 + :arc8c98b182 emotion - An emotion is a process (experience) that arises internally or from an involuntary physiological response to a stimulus. emotion++ + An emotion is a process (experience) that arises internally or from an involuntary physiological response to a stimulus. SIO_000276 @@ -5296,17 +5297,17 @@ role chains: mass - + mass is the quality of the amount of substance. SIO_000279 - + - :arce738b183 + :arc8c98b183 @@ -5367,17 +5368,17 @@ role chains: set - + A set is a collection of entities, for which there may be zero members. SIO_000289 - + - :arce738b184 + :arc8c98b184 @@ -5393,36 +5394,36 @@ role chains: collection of documents - - http://purl.org/ontology/bibo/Collection + A collection of documents is a non-zero set of documents. + http://purl.org/ontology/bibo/Collection SIO_000295 - + 2 - :arce738b185 + :arc8c98b185 website - + A website is a collection of documents published on the World Wide Web. SIO_000296 - + - :arce738b186 + :arc8c98b186 @@ -5440,34 +5441,34 @@ role chains: excerpt - + An excerpt is a contiguous or discontiguous portion of a document. SIO_000298 - + - :arce738b187 + :arc8c98b187 quote - + A quote is a excerpt that is attributed to a particular source. SIO_000299 - + - :arce738b188 + :arc8c98b188 @@ -5518,29 +5519,29 @@ role chains: normality - + normality is the quality in which the value may differ from normal or average SIO_000307 - + - - :arce738b189 + + :arc8c98b189 - + - - :arce738b190 + + :arc8c98b190 - + - :arce738b191 + :arc8c98b191 @@ -5565,52 +5566,52 @@ role chains: polymer - + A polymer is a molecule composed of a connected set of monomeric residues. SIO_000314 - + - :arce738b192 + :arc8c98b192 functional specification - + A functional specification is a specification that describes the characteristics of an object. SIO_000315 - + - - :arce738b193 + + :arc8c98b193 - + - - :arce738b194 + + :arc8c98b194 - + - - :arce738b195 + + :arc8c98b195 - + - :arce738b196 + :arc8c98b196 @@ -5690,17 +5691,17 @@ role chains: positional identifier - + A positional description is a description of location using some system or frame of reference. SIO_000328 - + - :arce738b197 + :arc8c98b197 @@ -5734,143 +5735,143 @@ role chains: 3D cartesian coordinate - + A 3D cartesian coordinate is a coordinate that is composed of an x, y and z coordinate. SIO_000333 - + - - :arce738b198 + + :arc8c98b198 - - - - :arce738b200 + + + + :arc8c98b200 - + 1 - :arce738b199 + :arc8c98b199 - - - - :arce738b202 + + + + :arc8c98b202 - + 1 - :arce738b201 + :arc8c98b201 - - + + - :arce738b204 + :arc8c98b204 - + 1 - :arce738b203 + :arc8c98b203 objective - - + + An objective is a proposition that indicates a planned or anticipated outcome. SIO_000337 - + - :arce738b205 + :arc8c98b205 - + - :arce738b206 + :arc8c98b206 realizable entity - - + + A realizable entity is an attribute that is exhibited under some condition and is realized in some process. core SIO_000340 - + - :arce738b207 + :arc8c98b207 - + - :arce738b208 + :arc8c98b208 term variant - + A term variant is a term that is a variant of another term. SIO_000342 - + - - :arce738b209 + + :arc8c98b209 - + - - :arce738b210 + + :arc8c98b210 - - + + - :arce738b212 + :arc8c98b212 - + - :arce738b211 + :arc8c98b211 @@ -6006,42 +6007,42 @@ role chains: belief - + A belief is a proposition that is believed to be true. SIO_000360 - + - - :arce738b213 + + :arc8c98b213 - + - - :arce738b214 + + :arc8c98b214 - + - - :arce738b215 + + :arc8c98b215 - - + + - :arce738b217 + :arc8c98b217 - + - :arce738b216 + :arc8c98b216 @@ -6075,19 +6076,19 @@ role chains: spatial region - + + region A spatial region is an object contained in some region of space. The airspace above Ottawa airport; the band around the northern hemisphere between 50 degrees N and 60 degrees N; the spatial region occupied by a bottle. - region SIO_000370 - + - :arce738b218 + :arc8c98b218 @@ -6274,7 +6275,7 @@ role chains: time measurement - + Time intervals are specified as date/datetime ranges. the duration of my life; the duration of a surgical procedure, the moment of death time measurement is a measurement value of the duration of some interval of time or a particular instant of time (against some frame of reference). @@ -6282,11 +6283,11 @@ role chains: - + - :arce738b219 + :arc8c98b219 @@ -6302,34 +6303,34 @@ role chains: patient - + A patient is an individual that is the recepient of medical care. SIO_000393 - + - :arce738b220 + :arc8c98b220 doctor - + A doctor is an individual who practices medicine, which is concerned with promoting, maintaining or restoring human health through the study, diagnosis, and treatment of disease, injury, and other physical and mental impairments. SIO_000394 - + - :arce738b221 + :arc8c98b221 @@ -6364,17 +6365,17 @@ role chains: nurse - + A nurse is an individual that is involved in the protection, promotion, and optimization of health and abilities, prevention of illness and injury, alleviation of suffering through the diagnosis and treatment of human response, and advocacy in the care of individuals, families, communities, and populations. SIO_000398 - + - :arce738b222 + :arc8c98b222 @@ -6649,97 +6650,97 @@ role chains: informational quality - + An informational quality is a quality that pertains to information. SIO_000436 - + - :arce738b223 + :arc8c98b223 2D cartesian point - + A 2D cartesian point is a point whose position is specified along two dimensions using Cartesian coordinates. SIO_000437 - + - - :arce738b224 + + :arc8c98b224 - + - - :arce738b225 + + :arc8c98b225 - - - - :arce738b227 + + + + :arc8c98b227 - + - - :arce738b226 + + :arc8c98b226 - + - - :arce738b228 + + :arc8c98b228 - + - - :arce738b229 + + :arc8c98b229 - + - :arce738b230 + :arc8c98b230 - - - - :arce738b232 + + + + :arc8c98b232 - + 1 - :arce738b231 + :arc8c98b231 - - + + - :arce738b234 + :arc8c98b234 - + 1 - :arce738b233 + :arc8c98b233 @@ -6763,112 +6764,112 @@ role chains: 3D cartesian point - + A 3D cartesian point is a point whose position is specified along three dimensions using Cartesian coordinates. SIO_000440 - + - - :arce738b235 + + :arc8c98b235 - + - - :arce738b236 + + :arc8c98b236 - - - - :arce738b238 + + + + :arc8c98b238 - + 1 - :arce738b237 + :arc8c98b237 - - - - :arce738b240 + + + + :arc8c98b240 - + 1 - :arce738b239 + :arc8c98b239 - - + + - :arce738b242 + :arc8c98b242 - + 1 - :arce738b241 + :arc8c98b241 1D cartesian point - + A 1D cartesian point is a point whose position is specified along a single dimension using Cartesian coordinates. SIO_000441 - + - - :arce738b243 + + :arc8c98b243 - + - - :arce738b244 + + :arc8c98b244 - - - - :arce738b246 + + + + :arc8c98b246 - + - :arce738b245 + :arc8c98b245 - - + + - :arce738b248 + :arc8c98b248 - + 1 - :arce738b247 + :arc8c98b247 @@ -6936,17 +6937,17 @@ role chains: figure part - + A figure part is a part of a figure. SIO_000448 - + - :arce738b249 + :arc8c98b249 @@ -6965,7 +6966,7 @@ the two axes in Graph 1 of http://tinyurl.com/opwnvm axis - + An axis is a line segment that is part of a statistical graph in which the position along the line corresponds to a numeric or categorical value. The left vertical and bottom horizontal lines with tickmarks in @@ -6975,28 +6976,28 @@ Graph 1 http://tinyurl.com/opwnvm - + - :arce738b250 + :arc8c98b250 Cartesian coordinate axis - + A Cartesian coordinate axis is an axis whose behavior follows that of a Cartesian coordinate system. SIO_000451 - + - :arce738b251 + :arc8c98b251 @@ -7005,10 +7006,10 @@ Graph 1 http://tinyurl.com/opwnvm + horizontal axis An x-axis is a Cartesian coordinate axis that is aligned with the horizon. In most figures, this axis represents categories, such as months, market segments, or other non-numeric data. The horizontal axis in http://tinyurl.com/opwnvm - horizontal axis SIO_000452 @@ -7017,8 +7018,8 @@ Graph 1 http://tinyurl.com/opwnvm y-axis - vertical axis A y-axis is a Cartesian coordinate axis that is spatially oriented perpendicular to the x-axis. + vertical axis SIO_000453 @@ -7035,7 +7036,7 @@ Graph 1 http://tinyurl.com/opwnvm category axis - + A category axis is an axis in which the position along the line is partioned into categories. @@ -7045,22 +7046,22 @@ of http://tinyurl.com/opwnvm - + - - :arce738b252 + + :arc8c98b252 - + - - :arce738b253 + + :arc8c98b253 - + - :arce738b254 + :arc8c98b254 @@ -7089,7 +7090,7 @@ http://tinyurl.com/opwnvm value axis - + A value axis holds the properties of having a minimum and a maximum value, and is usually associated with tickmarks that indicate intervals along the axis. A value axis is an axis in which the position along the line is partioned into numeric values. @@ -7099,34 +7100,34 @@ billions of dollars in Graph 1 of http://tinyurl.com/opwnvm - + - - :arce738b255 + + :arc8c98b255 - + - - :arce738b256 + + :arc8c98b256 - + - - :arce738b257 + + :arc8c98b257 - + - - :arce738b258 + + :arc8c98b258 - + - :arce738b259 + :arc8c98b259 @@ -7190,17 +7191,17 @@ billions of dollars in Graph 1 of http://tinyurl.com/opwnvm data point - + A data point is a point that which corresponds to the projection of the values of measurement data against the axes of a statistical graph. SIO_000465 - + - :arce738b260 + :arc8c98b260 @@ -7235,36 +7236,36 @@ Graph 1 of http://tinyurl.com/opwnvm graph title - + A graph title is a title that describes a graph. Total value of permits increased slightly in December" in Graph 1 of http://tinyurl.com/opwnvm SIO_000469 - + - - :arce738b261 + + :arc8c98b261 - + - - :arce738b262 + + :arc8c98b262 - - + + - :arce738b264 + :arc8c98b264 - + - :arce738b263 + :arc8c98b263 @@ -7299,35 +7300,35 @@ Graph 1 of http://tinyurl.com/opwnvm primary graph title - + "Total value of permits increased slightly in December" in Graph 1 of http://tinyurl.com/opwnvm A primary graph title is a primary title that describes a statistical graph. SIO_000473 - + - :arce738b265 + :arc8c98b265 secondary graph title - + A secondary graph title is a secondary title that describes a statistical graph. SIO_000474 - + - :arce738b266 + :arc8c98b266 @@ -7343,17 +7344,17 @@ Graph 1 of http://tinyurl.com/opwnvm cellular quality - + cellular quality is the quality of a cell SIO_000476 - + - :arce738b267 + :arc8c98b267 @@ -7396,18 +7397,18 @@ Graph 1 of http://tinyurl.com/opwnvm phrase - + A phrase is a group of words functioning as a single unit in the syntax of a sentence. SIO_000483 - + 2 - :arce738b268 + :arc8c98b268 @@ -7504,104 +7505,104 @@ Graph 1 of http://tinyurl.com/opwnvm polygon vertex - - + + A polygon vertex is a terminal point at which two polygon edges meet and are part of a polygon. SIO_000500 - - - - - 1 - :arce738b269 - - - + 2 - :arce738b270 + :arc8c98b269 + + + + + + + 1 + :arc8c98b270 polygon edge - - + + A polygon edge is a line segment joining two polygon vertices. SIO_000501 - + - :arce738b271 + :arc8c98b271 - + 2 - :arce738b272 + :arc8c98b272 polyhedral skeleton - + A polyhedral skeleton is a collection of polygon edges. SIO_000502 - + - :arce738b273 + :arc8c98b273 polygonal face - + A polygonal face is a polygon bounded by a circuit of polygon edges, and includes the flat (plane) region inside the boundary. SIO_000503 - + - :arce738b274 + :arc8c98b274 polyhedral surface - + A polyhedral surface is composed of polygonal faces. SIO_000504 - + - :arce738b275 + :arc8c98b275 @@ -7617,8 +7618,8 @@ Graph 1 of http://tinyurl.com/opwnvm geometric entity - A geometric entity is an information content entity that pertains to the structure and topology of a space. geometry+ + A geometric entity is an information content entity that pertains to the structure and topology of a space. SIO_000506 @@ -7656,69 +7657,69 @@ pair of points. model - + A model is a representation of some thing. SIO_000510 - + - :arce738b276 + :arc8c98b276 line - + A line is curve that extends in a single dimension (e.g. straight line; exhibits no curvature), and is composed of at least two fully connected points. SIO_000511 - + - - :arce738b277 + + :arc8c98b277 - + - - :arce738b278 + + :arc8c98b278 - + - - :arce738b279 + + :arc8c98b279 - + - :arce738b280 + :arc8c98b280 line segment - + A line segment is a line and a part of a curve that is (inclusively) bounded by two terminal points. SIO_000512 - + 2 - :arce738b281 + :arc8c98b281 @@ -7797,91 +7798,91 @@ pair of points. directed line segment - - + + A directed line segment is a line segment that is contained by an ordered pair of endpoints (a start point and an endpoint). SIO_000521 - + - + 1 - :arce738b282 + :arc8c98b282 - + - + 1 - :arce738b283 + :arc8c98b283 arrowed line segment - - + + An arrowed line is a directed line segment in which one or both endpoints is tangentially part of a triangle that bisects the line. SIO_000522 - - - - - :arce738b284 - - - + 2 - :arce738b285 + :arc8c98b284 + + + + + + + :arc8c98b285 single arrowed line segment - + A single arrowed line is directed line in which the endpoint is tangentially part of a triangle that bisects the line. SIO_000523 - + 1 - :arce738b286 + :arc8c98b286 double arrowed line segment - + A double arrowed line is an arrowed line in which both terminal points are tangentially part of different triangles that bisect the line. SIO_000524 - + 2 - :arce738b287 + :arc8c98b287 @@ -8051,17 +8052,17 @@ of endpoints (a start point and an endpoint). to serve as a host - + to serve as host is the capability to act in a manner that provides hospitality, serves to harbour an organism in or on itself. SIO_000543 - + - :arce738b288 + :arc8c98b288 @@ -8077,19 +8078,19 @@ of endpoints (a start point and an endpoint). polyline - + A polyline is a connected sequence of line segments. polygonal chain, polygonal curve, polygonal path, piecewise linear curve SIO_000545 - + 2 - :arce738b289 + :arc8c98b289 @@ -8097,17 +8098,17 @@ of endpoints (a start point and an endpoint). collection of points - + A collection of points is a geometric entity that contains a non-zero set of geometric points. SIO_000546 - + - :arce738b290 + :arc8c98b290 @@ -8134,8 +8135,8 @@ of endpoints (a start point and an endpoint). to increase the activation energy - to inhibit to increase the activation energy is to require a larger amount of energy in order to form or break a chemical bond. + to inhibit SIO_000550 @@ -8154,8 +8155,8 @@ of endpoints (a start point and an endpoint). normal - A quality that has a value that is normal or average. PATO:0000461 + A quality that has a value that is normal or average. SIO_000554 @@ -8182,25 +8183,25 @@ of endpoints (a start point and an endpoint). chemical synthesis - - + + chemical synthesis is synthesis of a chemical entity from physical precursors through one or more chemical interactions or reactions. SIO_000559 - + - - - :arce738b291 + + + :arc8c98b291 - + - - - :arce738b292 + + + :arc8c98b292 @@ -8235,17 +8236,17 @@ of endpoints (a start point and an endpoint). diffusion equation - + A diffusion equation describes density fluctuations in a material undergoing diffusion. SIO_000565 - + - :arce738b293 + :arc8c98b293 @@ -8334,42 +8335,42 @@ of endpoints (a start point and an endpoint). transporting - + transporting is a process in which one object physically moves another object from one location to another. SIO_000575 - + - - :arce738b294 + + :arc8c98b294 - - - - :arce738b296 + + + + :arc8c98b296 - + - :arce738b295 + :arc8c98b295 - - + + - :arce738b298 + :arc8c98b298 - + - :arce738b297 + :arc8c98b297 @@ -8433,34 +8434,34 @@ of endpoints (a start point and an endpoint). birthing - + brirthing is the process by which a biological organism is brought into existence. SIO_000582 - + - :arce738b299 + :arc8c98b299 dying - + dying is a process in which a biological entity ceases to exist. SIO_000583 - + - :arce738b300 + :arc8c98b300 @@ -8485,28 +8486,28 @@ of endpoints (a start point and an endpoint). creating - + + development + production creation synthesis - production - development formulation creating is the process in which an entity comes into existence. SIO_000588 - + - :arce738b301 + :arc8c98b301 regulating - + regulating is a process that modulates the attributes of an object or process. regulation @@ -8514,28 +8515,28 @@ of endpoints (a start point and an endpoint). - + - - :arce738b302 + + :arc8c98b302 - + - - :arce738b303 + + :arc8c98b303 - + - - :arce738b304 + + :arc8c98b304 - + - :arce738b305 + :arc8c98b305 @@ -8551,130 +8552,130 @@ of endpoints (a start point and an endpoint). destroying - + destroying is a process in which something is broken down and/or ceases to exist. destruction SIO_000591 - + - :arce738b306 + :arc8c98b306 chemical destruction - + chemical destruction is destruction of a chemical entity to its chemical constituents through one ormore chemical interactions or reactions. SIO_000592 - + - :arce738b307 + :arc8c98b307 interacting - - + + core interacting is a process characterized by the interaction between two or more entities. SIO_000593 - + - - :arce738b308 + + :arc8c98b308 - - - - :arce738b310 + + + + :arc8c98b310 - + 2 - :arce738b309 + :arc8c98b309 - - + + - :arce738b312 + :arc8c98b312 - + 2 - :arce738b311 + :arc8c98b311 - + - :arce738b313 + :arc8c98b313 data transformation - - + + data transformation is the process of applying an algorithmic procedure to some input data and producing some output data. SIO_000594 - + - + - :arce738b314 + :arc8c98b314 - + - + - :arce738b315 + :arc8c98b315 parameterized data transformation - + A parameterized data transformation is a data transformation whose behaviour may be modified by one or more parameters. SIO_000595 - + - :arce738b316 + :arc8c98b316 @@ -8743,126 +8744,126 @@ of endpoints (a start point and an endpoint). regulation of process - + - + regulation of a process is a process that modulates the duration, frequency, spatial extent of a target process. SIO_000609 - + - - :arce738b317 + + :arc8c98b317 - + - - :arce738b318 + + :arc8c98b318 - + - - :arce738b319 + + :arc8c98b319 - + - - :arce738b320 + + :arc8c98b320 - + - :arce738b321 + :arc8c98b321 - + - :arce738b322 + :arc8c98b322 regulation of capability - + regulation of capability is the regulation of the ability of one party by another. SIO_000610 - + - :arce738b323 + :arc8c98b323 regulation of catalytic capability - + the regulation of the enzymatic activity. SIO_000611 - + - :arce738b324 + :arc8c98b324 representation - + - + A representation is a entity that in some way represents another entity (or attribute thereof). SIO_000612 - + - - :arce738b325 + + :arc8c98b325 - + - - :arce738b326 + + :arc8c98b326 - - + + - :arce738b328 + :arc8c98b328 - + - :arce738b327 + :arc8c98b327 - + - :arce738b329 + :arc8c98b329 @@ -8879,70 +8880,70 @@ of endpoints (a start point and an endpoint). attribute - + An attribute is a characteristic of some entity. core SIO_000614 - + - :arce738b330 + :arc8c98b330 collection - + A collection is a set for which there exists at least one member, although any member need not to exist at any point in the collection's existence. SIO_000616 - + - :arce738b331 + :arc8c98b331 empty set - + An empty set is a set for which there are exactly 0 members. SIO_000617 - + 0 - :arce738b332 + :arc8c98b332 standard - + A standard is a socially-agreed upon specification. SIO_000618 - + - :arce738b333 + :arc8c98b333 @@ -8958,8 +8959,8 @@ of endpoints (a start point and an endpoint). collective - group A collective is a group of entities that share or are motivated by at least one common issue or interest, or work together on a specific project(s) to achieve a common objective. + group SIO_000620 @@ -9042,8 +9043,8 @@ of endpoints (a start point and an endpoint). increased - A quality that has a value that is increased compared to normal or average. PATO:0002300 + A quality that has a value that is increased compared to normal or average. SIO_000640 @@ -9052,18 +9053,18 @@ of endpoints (a start point and an endpoint). process model - + A process model is a representation of some process. SIO_000647 - + - :arce738b334 + :arc8c98b334 @@ -9106,42 +9107,42 @@ of endpoints (a start point and an endpoint). version label - + A version label is a label for a particular form or variation of an earlier or original type. SIO_000653 - + - - :arce738b335 + + :arc8c98b335 - + - :arce738b336 + :arc8c98b336 software version label - + A software version label is a version label for a piece of software. major.minor[.build[.revision]] SIO_000654 - + - :arce738b337 + :arc8c98b337 @@ -9157,17 +9158,17 @@ of endpoints (a start point and an endpoint). province - + A province is a territorial unit, almost always an administrative division, within a country or state. SIO_000661 - + - :arce738b338 + :arc8c98b338 @@ -9245,44 +9246,44 @@ of endpoints (a start point and an endpoint). unique identifier - + - + A unique identifier is an identifier that uniquely identifies some thing. SIO_000675 - + - - :arce738b339 + + :arc8c98b339 - + - - :arce738b340 + + :arc8c98b340 - - + + - :arce738b342 + :arc8c98b342 - + - :arce738b341 + :arc8c98b341 - + - :arce738b343 + :arc8c98b343 @@ -9361,18 +9362,18 @@ of endpoints (a start point and an endpoint). to be actively interacted with - + to be actively interacted with is the capability to be manipulated by some device or agent. SIO_000692 - + - :arce738b344 + :arc8c98b344 @@ -9388,51 +9389,51 @@ of endpoints (a start point and an endpoint). to be passively interacted with - + to be passively interacted with is the capability of an object to be observed. SIO_000694 - + - :arce738b345 + :arc8c98b345 to be recorded - + to be recorded is the capability of an object to be observed in such a way that information about it can be transcribed in a specified format on some physical medium. SIO_000695 - + - :arce738b346 + :arc8c98b346 to be observed - + to be observed is the capability of an object to be perceived. SIO_000696 - + - :arce738b347 + :arc8c98b347 @@ -9457,67 +9458,67 @@ of endpoints (a start point and an endpoint). to interact with - - + + to interact with is a capabililty that involves another object. SIO_000701 - + - :arce738b348 + :arc8c98b348 - + - :arce738b349 + :arc8c98b349 to be interacted with - - + + to be interacted with is the capability of an object to be target of a physical interaction. SIO_000702 - + - :arce738b350 + :arc8c98b350 - + - :arce738b351 + :arc8c98b351 evolving - + evolving is a process that elicits change across successive generations in the inherited characteristics of biological populations. SIO_000703 - + - :arce738b352 + :arc8c98b352 @@ -9552,43 +9553,43 @@ of endpoints (a start point and an endpoint). student role - + A student role is the role of an individual that is enrolled in courses at an academic institution. SIO_000707 - + - :arce738b353 + :arc8c98b353 professor role - - + + A professor role is the role of an individual that is involved in teaching of students (undergraduate and/or graduate) at a post-secondary academic institution. SIO_000708 - + - :arce738b354 + :arc8c98b354 - + - :arce738b355 + :arc8c98b355 @@ -9659,7 +9660,7 @@ of endpoints (a start point and an endpoint). to translocate - + to move to translocate is the capability to displace oneself from one location to another. @@ -9667,29 +9668,29 @@ of endpoints (a start point and an endpoint). - + - :arce738b356 + :arc8c98b356 to be translocated - + to be moved to be translocated is the capability to be physically displaced from one location to another SIO_000720 - + - :arce738b357 + :arc8c98b357 @@ -9768,17 +9769,17 @@ of endpoints (a start point and an endpoint). record identifier - + A record identifier is an identifier for a database entry. SIO_000729 - + - :arce738b358 + :arc8c98b358 @@ -9812,35 +9813,35 @@ of endpoints (a start point and an endpoint). planning - + planning is the agentive process of developing a plan that specifies a set of actions in order to meet a set of goals or objectives. SIO_000739 - + - - :arce738b359 + + :arc8c98b359 - + - - :arce738b360 + + :arc8c98b360 - + - - :arce738b361 + + :arc8c98b361 - + - :arce738b362 + :arc8c98b362 @@ -9883,145 +9884,145 @@ of endpoints (a start point and an endpoint). learning - + learning is the agentive process of acquiring knowledge. SIO_000744 - + - :arce738b363 + :arc8c98b363 comparing - - comparison + comparing is the process of examining a set of objects and determining their equality or inequality based on one or more features. + comparison SIO_000745 - + - - :arce738b364 + + :arc8c98b364 - - - - :arce738b366 + + + + :arc8c98b366 - + - :arce738b365 + :arc8c98b365 - - + + - :arce738b368 + :arc8c98b368 - + - :arce738b367 + :arc8c98b367 reasoning - + reasoning is the agentive process of using knowledge to evaluate the truth value of a proposition. SIO_000746 - + - - :arce738b369 + + :arc8c98b369 - + - - :arce738b370 + + :arc8c98b370 - + - - :arce738b371 + + :arc8c98b371 - - + + - :arce738b373 + :arc8c98b373 - + - :arce738b372 + :arc8c98b372 investigation - - - study + + investigation is the process of carrying out a plan or procedure so as to discover facts or information about the object of study. + study SIO_000747 - + - - - :arce738b374 + + + :arc8c98b374 - + - - - :arce738b375 + + + :arc8c98b375 predicting - + predicting is the process of formulating a proposition about a state of affairs which might be realized in the future. SIO_000748 - + - :arce738b376 + :arc8c98b376 @@ -10047,218 +10048,218 @@ of endpoints (a start point and an endpoint). row - - + + A row represents a single, implicitly structured data item in a table. SIO_000752 - + - :arce738b377 + :arc8c98b377 - + - :arce738b378 + :arc8c98b378 column - - + + A column is a vertical sequence of cells in a cellular automata. SIO_000753 - + - - :arce738b379 + + :arc8c98b379 - + - - :arce738b380 + + :arc8c98b380 - + - - :arce738b381 + + :arc8c98b381 - - - - :arce738b383 + + + + :arc8c98b383 - + - :arce738b382 + :arc8c98b382 - - + + - :arce738b385 + :arc8c98b385 - + - :arce738b384 + :arc8c98b384 - + 0 - :arce738b386 + :arc8c98b386 database table - + A database table is a set of named columns with zero or more rows composed of cells that contain column values and is part of a database. SIO_000754 - + - :arce738b387 + :arc8c98b387 cell (informational) - + The minimal unit of a cellular automaton that can change state and has an associated behavior. SIO_000755 - + - :arce738b388 + :arc8c98b388 database entry - + A database entry is a single, implicitly structured data item in a table. database record SIO_000756 - + - :arce738b389 + :arc8c98b389 database column - + A database collumn is a column in a database table. SIO_000757 - + - :arce738b390 + :arc8c98b390 disordered - + disordered is a structural quality in which the parts of an object are non-rigid. SIO_000758 - + - - :arce738b391 + + :arc8c98b391 - + - - :arce738b392 + + :arc8c98b392 - + - - :arce738b393 + + :arc8c98b393 - - + + - :arce738b395 + :arc8c98b395 - + - :arce738b394 + :arc8c98b394 unique cell - + A unique cell is a cell that contains a unique value in the cellular automaton. SIO_000759 - + - :arce738b396 + :arc8c98b396 @@ -10274,137 +10275,137 @@ of endpoints (a start point and an endpoint). referent cell - + A referent cell is a cell that is the referent of some function or pointer. SIO_000761 - + - :arce738b397 + :arc8c98b397 database key - - + + A database key is an informational entity whose value is constructed from one or more database columns. SIO_000762 - + - :arce738b398 + :arc8c98b398 - + - :arce738b399 + :arc8c98b399 primary database key - - + + A primary database key is a database key that identifies every row of a table. SIO_000763 - - - - - :arce738b400 - - - + - - :arce738b401 + + :arc8c98b400 - + null - :arce738b402 + :arc8c98b401 + + + + + + + :arc8c98b402 foreign database key - + A foreign database key is a database key that refers to a key in some table. SIO_000764 - + - :arce738b403 + :arc8c98b403 probability value - + A p-value or probability value is the probability of obtaining a test statistic at least as extreme as the one that was actually observed, assuming that the null hypothesis is true p-value SIO_000765 - + - - :arce738b404 + + :arc8c98b404 - + - - :arce738b405 + + :arc8c98b405 - - - - :arce738b407 + + + + :arc8c98b407 - + 0.0 - :arce738b406 + :arc8c98b406 - - + + - :arce738b409 + :arc8c98b409 - + 1.0 - :arce738b408 + :arc8c98b408 @@ -10465,18 +10466,18 @@ of endpoints (a start point and an endpoint). object - + An object is an entity that is wholly identifiable at any instant of time during which it exists. core SIO_000776 - + - :arce738b410 + :arc8c98b410 @@ -10501,98 +10502,98 @@ of endpoints (a start point and an endpoint). primer - + A primer is a nucleic acid that enables the synthesis of a complement strand of DNA by binding to it and acting as a point of transcription initiation. SIO_000779 - + - - :arce738b411 + + :arc8c98b411 - + - - :arce738b412 + + :arc8c98b412 - - + + - :arce738b414 + :arc8c98b414 - + - - :arce738b413 + + :arc8c98b413 - + - - :arce738b415 + + :arc8c98b415 - + - - :arce738b416 + + :arc8c98b416 - - - - :arce738b418 + + + + :arc8c98b418 - + - :arce738b417 + :arc8c98b417 - - + + - :arce738b420 + :arc8c98b420 - + - - :arce738b419 + + :arc8c98b419 - + - - :arce738b421 + + :arc8c98b421 - + - - :arce738b422 + + :arc8c98b422 - - + + - :arce738b424 + :arc8c98b424 - + - :arce738b423 + :arc8c98b423 @@ -10714,17 +10715,17 @@ of endpoints (a start point and an endpoint). chemical entity role - + A chemical role is a processual role held by a chemical entity. SIO_000795 - + - :arce738b425 + :arc8c98b425 @@ -10749,17 +10750,17 @@ of endpoints (a start point and an endpoint). product role - + The role of a chemical entity present at the end of a chemical reaction. SIO_000798 - + - :arce738b426 + :arc8c98b426 @@ -10858,75 +10859,75 @@ of endpoints (a start point and an endpoint). partial charge - + The quality of having a charge that is not a full multiple of 1 unit charge. SIO_000809 - + - - :arce738b427 + + :arc8c98b427 - + - - :arce738b428 + + :arc8c98b428 - + - :arce738b429 + :arc8c98b429 complete charge - + A complete charge is a charge where the value of the charge is a multiple of 1. SIO_000810 - + - - :arce738b430 + + :arc8c98b430 - + - - :arce738b431 + + :arc8c98b431 - + - :arce738b432 + :arc8c98b432 URL - + A Uniform Resource Locator or Universal Resource Locator (URL) is a specific character string that constitutes a reference to an Internet resource. Uniform Resource Locator SIO_000811 - + - :arce738b433 + :arc8c98b433 @@ -11069,8 +11070,8 @@ of endpoints (a start point and an endpoint). disappointment - disappointing disappointed + disappointing disappointment is the feeling of dissatisfaction that follows the failure of expectations or hopes to manifest. SIO_000827 @@ -11107,34 +11108,34 @@ of endpoints (a start point and an endpoint). positive emotion - + A positive emotion is an emotion that feels good. SIO_000831 - + - :arce738b434 + :arc8c98b434 negative emotion - + negative emotion is an emotion that does not feel good. SIO_000832 - + - :arce738b435 + :arc8c98b435 @@ -11196,9 +11197,9 @@ of endpoints (a start point and an endpoint). gratitude gratification - appreciation - thankfullness gratefulness + thankfullness + appreciation Gratitude, thankfulness, gratefulness, or appreciation is a feeling, emotion or attitude in acknowledgment of a benefit that one has received or will receive. SIO_000839 @@ -11217,8 +11218,8 @@ of endpoints (a start point and an endpoint). guilt - guilty Guilt is the emotion borne from feeling responsible for the commission of an offense and arises out of public humiliation. + guilty SIO_000841 @@ -11272,54 +11273,54 @@ of endpoints (a start point and an endpoint). indifference - + indifference is an emotion characterized by lack of interest, concern, or sympathy. SIO_000847 - + - - :arce738b436 + + :arc8c98b436 - - - - :arce738b438 + + + + :arc8c98b438 - + - - :arce738b437 + + :arc8c98b437 - + - :arce738b439 + :arc8c98b439 - - + + - :arce738b441 + :arc8c98b441 - + - - :arce738b440 + + :arc8c98b440 - + - :arce738b442 + :arc8c98b442 @@ -11671,51 +11672,51 @@ of endpoints (a start point and an endpoint). buffer role - + A buffer role is the role of a chemical substance which maintains a pH at a near constant value. SIO_000887 - + - :arce738b443 + :arc8c98b443 chemical substance role - + A chemical substance role is a chemical entity role held by a chemical substance. SIO_000888 - + - :arce738b444 + :arc8c98b444 molecular entity role - + A molecular entity role is a chemical entity role held by a molecule. SIO_000889 - + - :arce738b445 + :arc8c98b445 @@ -11740,17 +11741,17 @@ of endpoints (a start point and an endpoint). reagent role - + A role of a chemical substance that participates in a chemical reaction as part of some scientific investigation. SIO_000893 - + - :arce738b446 + :arc8c98b446 @@ -11784,18 +11785,18 @@ of endpoints (a start point and an endpoint). association - + An assocation is a relationship between two or more entities derived by some informational analysis. SIO_000897 - + 2 - :arce738b447 + :arc8c98b447 @@ -11928,194 +11929,194 @@ of endpoints (a start point and an endpoint). numeric scale - + A numeric scale of measurement is one that only specifies numeric values. SIO_000915 - + - - :arce738b448 + + :arc8c98b448 - + - - :arce738b449 + + :arc8c98b449 - + - - :arce738b450 + + :arc8c98b450 - - + + - :arce738b452 + :arc8c98b452 - + - :arce738b451 + :arc8c98b451 decimal scale - + A decimal scale of measurement is one that only specifies decimal values. SIO_000916 - + - - :arce738b453 + + :arc8c98b453 - + - - :arce738b454 + + :arc8c98b454 - + - - :arce738b455 + + :arc8c98b455 - - + + - :arce738b457 + :arc8c98b457 - + - :arce738b456 + :arc8c98b456 integer scale - + An integer scale of measurement is one that only specifies integer values. SIO_000917 - + - - :arce738b458 + + :arc8c98b458 - + - - :arce738b459 + + :arc8c98b459 - + - - :arce738b460 + + :arc8c98b460 - - + + - :arce738b462 + :arc8c98b462 - + - :arce738b461 + :arc8c98b461 modifying - - + + modification modifying is the process by which an entity gains or loses parts, qualities, roles, dispositions, functions, etc, but maintains their identity through these changes. SIO_000918 - + - :arce738b463 + :arc8c98b463 - + - :arce738b464 + :arc8c98b464 reproducing - + reproducing is a process characterized by creation of an entity that is similar or exactly the same as the template from which it is derived. SIO_000919 - + - - :arce738b465 + + :arc8c98b465 - - - - :arce738b467 + + + + :arc8c98b467 - + - :arce738b466 + :arc8c98b466 - - + + - :arce738b469 + :arc8c98b469 - + - :arce738b468 + :arc8c98b468 @@ -12266,17 +12267,17 @@ of endpoints (a start point and an endpoint). textual chart - + A textual chart is a chart containing text. SIO_000937 - + - :arce738b470 + :arc8c98b470 @@ -12419,8 +12420,8 @@ of endpoints (a start point and an endpoint). end position - stop position An end position is the distal position of an object relative to an origin in a linear system. + stop position SIO_000953 @@ -12520,29 +12521,29 @@ of endpoints (a start point and an endpoint). agreement quality - + agreement quality is a quality that exhibits the degree of consensus for some set of assertions. SIO_000965 - + - - :arce738b471 + + :arc8c98b471 - + - - :arce738b472 + + :arc8c98b472 - + - :arce738b473 + :arc8c98b473 @@ -12568,25 +12569,25 @@ of endpoints (a start point and an endpoint). poison role - + A poison role is the role of a substance that causes some negative disturbance in an organism. SIO_000968 - + - :arce738b474 + :arc8c98b474 communicating - communication communicating is the process of conveying information through the exchange of thoughts, messages, or information, as by speech, visuals, signals, writing, or behaviour. + communication SIO_000969 @@ -12595,50 +12596,50 @@ of endpoints (a start point and an endpoint). observational study - - + + observational study draws inferences about the possible effect of a treatment on subjects, where the assignment of subjects into a treated group versus a control group is outside the control of the investigator SIO_000976 - + + + + + :arc8c98b475 + + + - - :arce738b475 + + :arc8c98b476 - + - - :arce738b476 + + :arc8c98b477 - + - - :arce738b477 + + :arc8c98b478 - - + + - :arce738b479 + :arc8c98b480 - + - :arce738b478 - - - - - - - :arce738b480 + :arc8c98b479 @@ -12699,25 +12700,25 @@ of endpoints (a start point and an endpoint). gene-disease association - - + + A gene-disease association is an association between a gene and a disease. SIO_000983 - + - :arce738b481 + :arc8c98b481 - + - :arce738b482 + :arc8c98b482 @@ -12752,17 +12753,17 @@ of endpoints (a start point and an endpoint). predicted gene - + A predicted gene is a gene that was identified through computational method but has not been experimentally validated. SIO_000987 - + - :arce738b483 + :arc8c98b483 @@ -12788,17 +12789,17 @@ of endpoints (a start point and an endpoint). validated gene - + An experimentally validated gene is a gene whose existence has been demonstrated through experimental methods. SIO_000991 - + - :arce738b484 + :arc8c98b484 @@ -12814,42 +12815,42 @@ of endpoints (a start point and an endpoint). chemical-disease association - + A chemical-disease association is an association between a chemical and a disease. SIO_000993 - + - - :arce738b485 + + :arc8c98b485 - - - - :arce738b487 + + + + :arc8c98b487 - + - :arce738b486 + :arc8c98b486 - - + + - :arce738b489 + :arc8c98b489 - + - :arce738b488 + :arc8c98b488 @@ -12893,135 +12894,135 @@ of endpoints (a start point and an endpoint). literature curation - - + + literature curation is the process of an agent selecting and extracting terms and phrases from a document. SIO_000998 - + - :arce738b490 + :arc8c98b490 - + - :arce738b491 + :arc8c98b491 procedure - - + + A procedure is a process that attempts to achieve one or more objectives by following an established set of actions. SIO_000999 - + - :arce738b492 + :arc8c98b492 - + - - :arce738b493 + + :arc8c98b493 - + - - :arce738b494 + + :arc8c98b494 - + - - :arce738b495 + + :arc8c98b495 - + - :arce738b496 + :arc8c98b496 clinical trial - + A clinical trial is an intervention trial to determine the safety and efficacy of medical interventions (e.g., drugs, diagnostics, devices, therapy protocols). SIO_001000 - + - :arce738b497 + :arc8c98b497 medical diagnosis - - + + A medical diagnosis (often simply termed diagnosis) refers to the process of attempting to determine or identify a possible disease or disorder. SIO_001001 - + + + + + :arc8c98b498 + + + - - :arce738b498 + + :arc8c98b499 - + - - :arce738b499 + + :arc8c98b500 - + - - :arce738b500 + + :arc8c98b501 - - + + - :arce738b502 + :arc8c98b503 - + - :arce738b501 - - - - - - - :arce738b503 + :arc8c98b502 @@ -13046,148 +13047,148 @@ of endpoints (a start point and an endpoint). opinion - + An opinion is a belief that is the result of emotion or interpretation of facts. SIO_001004 - + - :arce738b504 + :arc8c98b504 drug effect - + A drug effect is a chemical interaction in which a chemical elicits a marked characteristic of a biological system. SIO_001005 - + - :arce738b505 + :arc8c98b505 drug drug interaction - + A drug-drug interaction is an interaction in which two drugs interact in such a way to produce a non-additive biological response. SIO_001006 - + 2 - :arce738b506 + :arc8c98b506 assay - - + + An assay is an investigative (analytic) procedure in laboratory medicine, pharmacology, environmental biology, and molecular biology for qualitatively assessing or quantitatively measuring the presence or amount or the functional activity of a target entity (the analyte) which can be a drug or biochemical substance or a cell in an organism or organic sample. SIO_001007 - - - - - :arce738b507 - - - + - - :arce738b508 + + :arc8c98b507 - + - - :arce738b509 + + :arc8c98b508 - - - - :arce738b511 + + + + :arc8c98b510 - + - - :arce738b510 + + :arc8c98b509 - + - - :arce738b512 + + :arc8c98b511 - + - :arce738b513 + :arc8c98b512 - - + + - :arce738b515 + :arc8c98b514 - + - :arce738b514 + :arc8c98b513 + + + + + + + :arc8c98b515 toxicity - + toxicity is the quality of a chemical substance to cause injury to an organism in a dose dependent manner. SIO_001008 - + - - :arce738b516 + + :arc8c98b516 - + - - :arce738b517 + + :arc8c98b517 - + - :arce738b518 + :arc8c98b518 @@ -13375,17 +13376,17 @@ of endpoints (a start point and an endpoint). peer reviewed article - + A peer reviewed article is an article that has undergone peer-review and deemed acceptable for publication. SIO_001029 - + - :arce738b519 + :arc8c98b519 @@ -13419,17 +13420,17 @@ of endpoints (a start point and an endpoint). text quality - + text quality is the quality of a textual entity. SIO_001033 - + - :arce738b520 + :arc8c98b520 @@ -13455,8 +13456,8 @@ of endpoints (a start point and an endpoint). draft - drafted draft is the quality of text that has not yet complete. + drafted SIO_001036 @@ -13501,25 +13502,25 @@ of endpoints (a start point and an endpoint). study design - - study protocol + A study design is a protocol for the proper execution of a study which normally requires a carefullly crafted research question or hypothesis and at least one variable under observation and observed values for that variable. + study protocol SIO_001041 - + - - :arce738b521 + + :arc8c98b521 - + - :arce738b522 + :arc8c98b522 @@ -13552,29 +13553,29 @@ of endpoints (a start point and an endpoint). polar quality - + The quality of being polar or not polar. SIO_001045 - + - - :arce738b523 + + :arc8c98b523 - + - - :arce738b524 + + :arc8c98b524 - + - :arce738b525 + :arc8c98b525 @@ -13609,143 +13610,143 @@ of endpoints (a start point and an endpoint). sampling - + sampling is the act of obtaining a sample, whether through selection, collection or preparation. SIO_001049 - + - - :arce738b526 + + :arc8c98b526 - - - - :arce738b528 + + + + :arc8c98b528 - + - :arce738b527 + :arc8c98b527 - - + + - :arce738b530 + :arc8c98b530 - + - :arce738b529 + :arc8c98b529 sample - + A sample is a limited quantity of something (e.g. an individual or set of individuals from a population, or a portion of a substance) to be used for testing, analysis, inspection, investigation, demonstration, or trial use. SIO_001050 - + - - :arce738b531 + + :arc8c98b531 - - - - :arce738b533 + + + + :arc8c98b533 - + - :arce738b532 + :arc8c98b532 - - + + - :arce738b535 + :arc8c98b535 - + - :arce738b534 + :arc8c98b534 data analysis - + data analysis is a process of inspecting, cleaning, transforming, and modeling data with the goal of highlighting useful information, suggesting conclusions, and supporting decision making. SIO_001051 - + - - :arce738b536 + + :arc8c98b536 - - - - :arce738b538 + + + + :arc8c98b538 - + - :arce738b537 + :arc8c98b537 - - + + - :arce738b540 + :arc8c98b540 - + - :arce738b539 + :arc8c98b539 data collection - + data collection is the process of acquiring information. SIO_001052 - + - :arce738b541 + :arc8c98b541 @@ -13761,111 +13762,111 @@ of endpoints (a start point and an endpoint). measuring - - + + measurement measuring is the process of determining the size, amount, or degree of (something) by using an instrument or device marked in standard units SIO_001054 - - - - - :arce738b542 - - - + - - :arce738b543 + + :arc8c98b542 - + - - :arce738b544 + + :arc8c98b543 - + - - :arce738b545 + + :arc8c98b544 - + - - :arce738b546 + + :arc8c98b545 - + - :arce738b547 + :arc8c98b546 + + + + + + + :arc8c98b547 observing - - + + observation observing is a process of passive interaction in which one entity makes note of attributes of one or more entities. SIO_001055 - + - + - :arce738b548 + :arc8c98b548 - + - + - :arce738b549 + :arc8c98b549 character position - - The ordinal position of a character in a sequence of characters. + character offset + The ordinal position of a character in a sequence of characters. SIO_001056 - + - :arce738b550 + :arc8c98b550 word start position - + The position of the first character in a word as an offset from the first character of the text in which it is found. SIO_001057 - + - :arce738b551 + :arc8c98b551 @@ -13944,25 +13945,25 @@ of endpoints (a start point and an endpoint). study - - + + A study is a process that realizes the steps of a study design. SIO_001066 - + - :arce738b552 + :arc8c98b552 - + - :arce738b553 + :arc8c98b553 @@ -13996,8 +13997,8 @@ of endpoints (a start point and an endpoint). control variable - extraneous variable controlled variable + extraneous variable A control variable that is believed to alter the dependent or independent variables, but may not actually be the focus of the experiment. So that variable will be kept constant or monitored to try to minimise its effect on the experiment. SIO_001070 @@ -14025,43 +14026,43 @@ of endpoints (a start point and an endpoint). text span - - selector + A text span is a subset of contiguous sequence of characters of a textual entity. + selector SIO_001073 - + - - :arce738b554 + + :arc8c98b554 - - - - :arce738b556 + + + + :arc8c98b556 - + - :arce738b555 + :arc8c98b555 - - + + - :arce738b558 + :arc8c98b558 - + - :arce738b557 + :arc8c98b557 @@ -14132,120 +14133,120 @@ of endpoints (a start point and an endpoint). t-statistic based increased differential gene expression - + A t-statistic based increased differential gene expression is a differential gene expression ratio in which the t-statistic is greater than zero. SIO_001081 - + - - :arce738b559 + + :arc8c98b559 - + - - :arce738b560 + + :arc8c98b560 - + - - :arce738b561 + + :arc8c98b561 - - + + - :arce738b563 + :arc8c98b563 - + - - :arce738b562 + + :arc8c98b562 - + - - :arce738b564 + + :arc8c98b564 - - + + - :arce738b566 + :arc8c98b566 - + 0.0 - :arce738b565 + :arc8c98b565 t-statistic based decreased differential gene expression - + A t-statistic based decreased differential gene expression is a differential gene expression ratio in which the t-statistic is less than zero. SIO_001082 - + - - :arce738b567 + + :arc8c98b567 - + - - :arce738b568 + + :arc8c98b568 - + - - :arce738b569 + + :arc8c98b569 - - + + - :arce738b571 + :arc8c98b571 - + - - :arce738b570 + + :arc8c98b570 - + - - :arce738b572 + + :arc8c98b572 - - + + - :arce738b574 + :arc8c98b574 - + 0.0 - :arce738b573 + :arc8c98b573 @@ -14297,42 +14298,42 @@ of endpoints (a start point and an endpoint). concentration - + concentration is the quantity of a constituent divided by the total volume of a mixture. SIO_001088 - + - - :arce738b575 + + :arc8c98b575 - + - - :arce738b576 + + :arc8c98b576 - + - - :arce738b577 + + :arc8c98b577 - - + + - :arce738b579 + :arc8c98b579 - + - :arce738b578 + :arc8c98b578 @@ -14424,42 +14425,42 @@ of endpoints (a start point and an endpoint). to interact and to be interacted with - + to interact and to be interacted with is a mutual disposition of interacting objects. SIO_001102 - + - - :arce738b580 + + :arc8c98b580 - - - - :arce738b582 + + + + :arc8c98b582 - + - :arce738b581 + :arc8c98b581 - - + + - :arce738b584 + :arc8c98b584 - + - :arce738b583 + :arc8c98b583 @@ -14502,8 +14503,8 @@ of endpoints (a start point and an endpoint). pathway - biological pathway A pathway is an effective specification that outlines a set of actions that forms a way to achieve an objective. + biological pathway SIO_001107 @@ -14521,9 +14522,9 @@ of endpoints (a start point and an endpoint). mean - A mean is the central tendency of a collection of numbers taken as the sum of the numbers divided by the size of the collection. - arithmeritic mean average + arithmeritic mean + A mean is the central tendency of a collection of numbers taken as the sum of the numbers divided by the size of the collection. SIO_001109 @@ -14559,36 +14560,36 @@ of endpoints (a start point and an endpoint). minimal value - - A minimal value is smallest value of an attribute for the entities in the defined set. + min + A minimal value is smallest value of an attribute for the entities in the defined set. SIO_001113 - + - :arce738b585 + :arc8c98b585 maximal value - + max A maximal value is largest value of an attribute for the entities in the defined set. SIO_001114 - + - :arce738b586 + :arc8c98b586 @@ -14623,57 +14624,57 @@ of endpoints (a start point and an endpoint). sequence - + + ordered list A sequence is an ordered list of entities. Like a set, it contains members (also called elements, or terms). For example, (M, A, R, Y) is a sequence of letters that differs from (A, R, M, Y), as the ordering matters, and (1, 1, 2, 3, 5, 8), which contains the number 1 at two different positions, is a valid sequence. - ordered list SIO_001118 - + - - :arce738b587 + + :arc8c98b587 - + - - :arce738b588 + + :arc8c98b588 - + - - :arce738b589 + + :arc8c98b589 - - - - :arce738b591 + + + + :arc8c98b591 - + - :arce738b590 + :arc8c98b590 - - + + - :arce738b593 + :arc8c98b593 - + - :arce738b592 + :arc8c98b592 @@ -14773,51 +14774,51 @@ of endpoints (a start point and an endpoint). regulation of molecular degradation - + A process that modulates the frequency, rate or extent of process involved in the destruction of a molecule. SIO_001129 - + - :arce738b594 + :arc8c98b594 protein mediated regulation of translation - + A process mediated by a protein that modulates the frequency, rate or extent of translation. SIO_001130 - + - :arce738b595 + :arc8c98b595 rna mediated regulation of translation - + A process mediated by rna that modulates the frequency, rate or extent of translation. SIO_001131 - + - :arce738b596 + :arc8c98b596 @@ -14942,17 +14943,17 @@ of endpoints (a start point and an endpoint). regulation of object quantity - + regulation of a participant quantity is the regulation of a process in which the quantity of its partcipants is changed. SIO_001145 - + - :arce738b597 + :arc8c98b597 @@ -15085,17 +15086,17 @@ of endpoints (a start point and an endpoint). annotation - + An annotation is a written explanatory or critical description, or other in-context information (e.g., pattern, motif, link), that has been associated with data or other types of information. SIO_001166 - + - :arce738b598 + :arc8c98b598 @@ -15120,17 +15121,17 @@ of endpoints (a start point and an endpoint). issue - + An issue is a single instance of a periodically published journal, magazine, or newspaper. SIO_001169 - + - :arce738b599 + :arc8c98b599 @@ -15146,8 +15147,8 @@ of endpoints (a start point and an endpoint). database cross-reference - dbxref A database cross-reference is an association between one data item and another. + dbxref SIO_001171 @@ -15165,54 +15166,54 @@ of endpoints (a start point and an endpoint). double stranded DNA - + double stranded nucleic acid is a molecular complex composed of two weakly connected deoxyribonucleic acids. SIO_001173 - + 2 - :arce738b600 + :arc8c98b600 nucleic acid strand - + - + A nucleic acid strand is a single-stranded nucleic acid that is part of a double stranded nucleic acid complex. SIO_001174 - + - - :arce738b601 + + :arc8c98b601 - + - - :arce738b602 + + :arc8c98b602 - + - :arce738b603 + :arc8c98b603 - + - :arce738b604 + :arc8c98b604 @@ -15239,36 +15240,36 @@ of endpoints (a start point and an endpoint). double stranded nucleic acid - + double stranded nucleic acid is a molecular complex composed of two weakly connected nucleic acids. SIO_001177 - + 2 - :arce738b605 + :arc8c98b605 double stranded RNA - + double stranded nucleic acid is a molecular complex composed of two weakly connected ribonucleic acids. SIO_001178 - + 2 - :arce738b606 + :arc8c98b606 @@ -15303,8 +15304,8 @@ of endpoints (a start point and an endpoint). ribosomal RNA gene http://purl.obolibrary.org/obo/SO_0001637 - rRNA gene A ribosomal RNA gene is a gene that codes for a ribosomal RNA molecule. + rRNA gene SIO_001182 @@ -15349,17 +15350,17 @@ of endpoints (a start point and an endpoint). database row - + A database row is a row that is part of a database table. SIO_001187 - + - :arce738b607 + :arc8c98b607 @@ -15415,18 +15416,18 @@ of endpoints (a start point and an endpoint). SADI web service invocation - + A SADI web service invocation is the excution of a SADI web service. sadi SIO_001193 - + - :arce738b608 + :arc8c98b608 @@ -15442,9 +15443,9 @@ of endpoints (a start point and an endpoint). behaviour - Behaviour is the set of actions and mannerisms made by systems (biological or otherwise) in response to stimuli or inputs, whether internal or external, conscious or subconscious, overt or covert, and voluntary or involuntary. - core behaviour+ + core + Behaviour is the set of actions and mannerisms made by systems (biological or otherwise) in response to stimuli or inputs, whether internal or external, conscious or subconscious, overt or covert, and voluntary or involuntary. SIO_001195 @@ -15507,50 +15508,50 @@ of endpoints (a start point and an endpoint). decreased molecular degradation from increased regulation - - + + A process that decreases the frequency, rate or extent of process involved in the destruction of a molecule as a result of increased regulation. SIO_001202 - - - - - :arce738b609 - - - + - - :arce738b610 + + :arc8c98b609 - + - - :arce738b611 + + :arc8c98b610 - + - - :arce738b612 + + :arc8c98b611 - - + + - :arce738b614 + :arc8c98b613 - + - :arce738b613 + :arc8c98b612 + + + + + + + :arc8c98b614 @@ -15593,186 +15594,186 @@ of endpoints (a start point and an endpoint). increased chemical destruction - - + + increased chemical destruction is a process in which there is an increase in the amount of chemical destroyed relative to some reference process SIO_001207 - + - :arce738b615 + :arc8c98b615 - + - - :arce738b616 + + :arc8c98b616 - + - - :arce738b617 + + :arc8c98b617 - + - - :arce738b618 + + :arc8c98b618 - - + + - :arce738b620 + :arc8c98b620 - + - - :arce738b619 + + :arc8c98b619 - + - - :arce738b621 + + :arc8c98b621 - + - - :arce738b622 + + :arc8c98b622 - - + + - :arce738b624 + :arc8c98b624 - + - :arce738b623 + :arc8c98b623 decreased chemical destruction - - - + + + decreased chemical destruction is a process in which there is a decrease in the amount of chemical destroyed relative to some reference process SIO_001208 - + + + + + :arc8c98b625 + + + - :arce738b625 + :arc8c98b626 - + - - :arce738b626 + + :arc8c98b627 - + - - :arce738b627 + + :arc8c98b628 - + - - :arce738b628 + + :arc8c98b629 - - + + - :arce738b630 + :arc8c98b631 - + - - :arce738b629 + + :arc8c98b630 - + - - :arce738b631 + + :arc8c98b632 - + - - :arce738b632 + + :arc8c98b633 - - + + - :arce738b634 + :arc8c98b635 - + - :arce738b633 - - - - - - - :arce738b635 + :arc8c98b634 assertional qualifier - + An assertional qualifier is the quality of affirmation, either being positive or negative. SIO_001209 - + - - :arce738b636 + + :arc8c98b636 - + - - :arce738b637 + + :arc8c98b637 - + - :arce738b638 + :arc8c98b638 @@ -15933,61 +15934,61 @@ of endpoints (a start point and an endpoint). small cytoplasmic RNA (scRNA) gene - + http://purl.obolibrary.org/obo/SO_0001266 A small cytoplasmic RNA (scRNA) gene is a gene that encodes a small (7S; 129 nucleotides) RNA molecule found in the cytosol and rough endoplasmic reticulum that are normally associated with proteins that are involved in specific selection and transport of other proteins. SIO_001227 - + - :arce738b639 + :arc8c98b639 small nuclear RNA (snRNA) gene - + http://purl.obolibrary.org/obo/SO_0001268 A small nuclear RNA (snRNA) gene is a gene that encodes a small niuclear RNA molecule. SIO_001228 - + - :arce738b640 + :arc8c98b640 small nucleolar RNA (snoRNA) gene - + http://purl.obolibrary.org/obo/SO_0001267 A small nucleolar RNA (snoRNA) gene is a gene that encodes a small RNA that are associated with the eukaryotic nucleus as components of small nucleolar ribonucleoproteins. SIO_001229 - + - :arce738b641 + :arc8c98b641 transfer RNA (tRNA) gene - + http://purl.obolibrary.org/obo/SO_0001272 A transfer RNA (tRNA) gene is a gene that codes for a tRNA used in the translation of a messenger RNA (mRNA) to produce a protein product. solube RNA (sRNA) gene @@ -15996,29 +15997,29 @@ of endpoints (a start point and an endpoint). - + - :arce738b642 + :arc8c98b642 small cytoplasmic RNA (scRNA) - + A small cytoplasmic RNA (scRNA) molecule is a small (7S; 129 nucleotides) RNA molecule found in the cytosol and rough endoplasmic reticulum that are normally associated with proteins that are involved in specific selection and transport of other proteins. scRNA SIO_001231 - + - :arce738b643 + :arc8c98b643 @@ -16184,26 +16185,26 @@ of endpoints (a start point and an endpoint). chemical-pathway association - - + + a chemical-pathway association is an association between a chemical and a pathway. drug-pathway association SIO_001250 - + - :arce738b644 + :arc8c98b644 - + - :arce738b645 + :arc8c98b645 @@ -16264,185 +16265,185 @@ of endpoints (a start point and an endpoint). chemical-gene assocation - - + + a chemical-gene assocation is an assocation between a chemical and a gene. SIO_001257 - + - :arce738b646 + :arc8c98b646 - + - :arce738b647 + :arc8c98b647 set item - + set item is an item in a set. SIO_001258 - + - :arce738b648 + :arc8c98b648 collection item - + a collection item is an item in a collection. SIO_001259 - + - :arce738b649 + :arc8c98b649 list item - - + + a list item is an item in a list. SIO_001260 - + - :arce738b650 + :arc8c98b650 - + - :arce738b651 + :arc8c98b651 ordered list item - + an ordered list item is an item in an ordered list. SIO_001261 - + - - :arce738b652 + + :arc8c98b652 - + - - :arce738b653 + + :arc8c98b653 - - - - :arce738b655 + + + + :arc8c98b655 - + - :arce738b654 + :arc8c98b654 - - + + - :arce738b657 + :arc8c98b657 - + - :arce738b656 + :arc8c98b656 anatomical entity - + an anatomical entity is an object that is a structural part (material or immaterial) of a biological entity. SIO_001262 - + - - :arce738b658 + + :arc8c98b658 - - - - :arce738b660 + + + + :arc8c98b660 - + - - :arce738b659 + + :arc8c98b659 - + - - :arce738b661 + + :arc8c98b661 - + - :arce738b662 + :arc8c98b662 - - + + - :arce738b664 + :arc8c98b664 - + - :arce738b663 + :arc8c98b663 @@ -16595,8 +16596,8 @@ of endpoints (a start point and an endpoint). discouragement - Discouragement is the emtion of having lost confidence or enthusiasm. discouraged + Discouragement is the emtion of having lost confidence or enthusiasm. SIO_001283 @@ -16605,8 +16606,8 @@ of endpoints (a start point and an endpoint). satisfaction - contentment pleasure + contentment satisfaction is the emotion of fulfillling one's wishes, expectations, or needs. SIO_001284 @@ -16635,8 +16636,8 @@ of endpoints (a start point and an endpoint). indecision - indecisiveness indecision is the emotion of being unable to choose between two or more possible courses of action. + indecisiveness SIO_001287 @@ -16654,8 +16655,8 @@ of endpoints (a start point and an endpoint). never - none of the time never refers to in none of the occasions. + none of the time SIO_001289 @@ -16664,8 +16665,8 @@ of endpoints (a start point and an endpoint). some of the time - some of the time some refers to in the minority of occasions + some of the time SIO_001290 @@ -16674,8 +16675,8 @@ of endpoints (a start point and an endpoint). most of the time - most refers to in the majority of occasions most of the time + most refers to in the majority of occasions SIO_001291 @@ -16750,8 +16751,8 @@ of endpoints (a start point and an endpoint). ovopub - ovopub+ An ovopub is an information content entity that contains and links to one or more resources and/or statements, including those describing its provenance, and is itself a dereferenceable resource. + ovopub+ SIO_001300 @@ -16876,115 +16877,115 @@ of endpoints (a start point and an endpoint). author list - + an ordered list of authors. SIO_001315 - + - - :arce738b665 + + :arc8c98b665 - + - - :arce738b666 + + :arc8c98b666 - + - - :arce738b667 + + :arc8c98b667 - - - - :arce738b669 + + + + :arc8c98b669 - + - :arce738b668 + :arc8c98b668 - - + + - :arce738b671 + :arc8c98b671 - + - - :arce738b670 + + :arc8c98b670 - + - - :arce738b672 + + :arc8c98b672 - + - - :arce738b673 + + :arc8c98b673 - + - :arce738b674 + :arc8c98b674 ordered list - + an ordered list is a list in which items are sequentially ordered. SIO_001316 - + - - :arce738b675 + + :arc8c98b675 - + - - :arce738b676 + + :arc8c98b676 - + - - :arce738b677 + + :arc8c98b677 - - + + - :arce738b679 + :arc8c98b679 - + - :arce738b678 + :arc8c98b678 @@ -17078,32 +17079,61 @@ of endpoints (a start point and an endpoint). + + + protein expression value + + A protein expression value is a quantity obtained from a protein expression experiment. + SIO_001327 + + + + + + copy number variation + + CNV + copy number variation refers to the number of deletions/duplications of a DNA region as compared to some reference state. + SIO_001328 + + + + + + single nucleotide variation + + SNV + a single nucleotide variation (SNV) is a nucleotide residue that is a variant compared to some reference nucleic acid sequence. + SIO_001329 + + + organism - + A biological organisn is a biological entity that consists of one or more cells and is capable of genomic replication (independently or not). SIO_010000 - + - - :arce738b680 + + :arc8c98b680 - + - - :arce738b681 + + :arc8c98b681 - + - :arce738b682 + :arc8c98b682 @@ -17119,17 +17149,17 @@ of endpoints (a start point and an endpoint). tissue - + A tissue is a mereologically maximal collection of cells that together perform some function. SIO_010002 - + - :arce738b683 + :arc8c98b683 @@ -17146,9 +17176,9 @@ of endpoints (a start point and an endpoint). chemical entity CHEBI:23367 - chemical+ A chemical entity is a material entity that pertains to chemistry. atom, ion, molecule, chemical substance, + chemical+ SIO_010004 @@ -17167,73 +17197,73 @@ of endpoints (a start point and an endpoint). polypeptide - + A polypeptide is an organic polymer composed of amino acid residues. SIO_010007 - + 2 - :arce738b684 + :arc8c98b684 nucleic acid - + A nucleic acid is an organic polymer composed of a sequence of nucleotide residues. SIO_010008 - + 2 - :arce738b685 + :arc8c98b685 ribonucleic acid - + A ribonucleic acid is an organic polymer composed of a sequence of ribonucleotide residues. SIO_010009 - + 2 - :arce738b686 + :arc8c98b686 deoxyribonucleic acid - + A deoxyribonucleic acid is an organic polymer composed of a sequence of deoxyribonucleotide residues. SIO_010010 - + 2 - :arce738b687 + :arc8c98b687 @@ -17249,18 +17279,18 @@ of endpoints (a start point and an endpoint). chemical interaction - + A chemical interaction is a biochemical process in which chemical entities interact through some set of attractive forces. biopax:Interaction SIO_010013 - + - :arce738b688 + :arc8c98b688 @@ -17276,8 +17306,8 @@ of endpoints (a start point and an endpoint). protein sequence - - + + A protein acid sequence is the character representation of the molecular structure of a protein. amino acid sequence polypeptide sequence @@ -17285,129 +17315,129 @@ of endpoints (a start point and an endpoint). - + + + + + :arc8c98b689 + + + - - :arce738b689 + + :arc8c98b690 - + - - :arce738b690 + + :arc8c98b691 - + - - :arce738b691 + + :arc8c98b692 - - + + - :arce738b693 - - - - - - - :arce738b692 + :arc8c98b694 - + - :arce738b694 + :arc8c98b693 nucleic acid sequence - - + + A nucleic acid sequence is a symbolic representation of the sequence of nucleic acid residues in a nucleic acid. SIO_010016 - + + + + + :arc8c98b695 + + + - - :arce738b695 + + :arc8c98b696 - + - - :arce738b696 + + :arc8c98b697 - + - - :arce738b697 + + :arc8c98b698 - - + + - :arce738b699 + :arc8c98b700 - + - :arce738b698 - - - - - - - :arce738b700 + :arc8c98b699 ribonucleic acid sequence - + A ribonucleic acid sequence is a symbolic representation of the sequence of ribonucleic acid residues in a ribonucleic acid. RNA sequence SIO_010017 - + - :arce738b701 + :arc8c98b701 deoxyribonucleic acid sequence - + A deoxyribonucleic acid sequence is a symbolic representation of the sequence of deoxyribonucleic acid residues in a deoxyribonucleic acid. DNA sequence SIO_010018 - + - :arce738b702 + :arc8c98b702 @@ -17423,17 +17453,17 @@ of endpoints (a start point and an endpoint). submolecular entity - + A submolecular entity is a part of a molecular entity. SIO_010020 - + - :arce738b703 + :arc8c98b703 @@ -17467,18 +17497,18 @@ of endpoints (a start point and an endpoint). oligosaccharide - + An oligosaccharide is an organic polymer composed of monosaccharides joined by glycosidic bonds. SIO_010025 - + 2 - :arce738b704 + :arc8c98b704 @@ -17494,18 +17524,18 @@ of endpoints (a start point and an endpoint). snp - + single nucleotide polymorphism single nucleotide polymorphism (SNP) is a variation in a single base in the genetic composition between different individuals of the same species. SIO_010027 - + - :arce738b705 + :arc8c98b705 @@ -17586,7 +17616,7 @@ of endpoints (a start point and an endpoint). biochemical reaction - + biopax:Conversion biopax:BiochemicalReaction A biochemical reaction is a biochemical process that involves the conversion of at least one chemical participant (target) into another (product) by an enzyme (agent). @@ -17594,72 +17624,72 @@ of endpoints (a start point and an endpoint). - + - - :arce738b706 + + :arc8c98b706 - + - - :arce738b707 + + :arc8c98b707 - - - - :arce738b709 + + + + :arc8c98b709 - + - :arce738b708 + :arc8c98b708 - - - - :arce738b711 + + + + :arc8c98b711 - + - :arce738b710 + :arc8c98b710 - - + + - :arce738b713 + :arc8c98b713 - + - :arce738b712 + :arc8c98b712 chemical element - + A chemical element is a (effectively) homogeneous substance composed of one type of atom. SIO_010037 - + - :arce738b714 + :arc8c98b714 @@ -17675,18 +17705,18 @@ of endpoints (a start point and an endpoint). pharmaceutical preparation - + drug A pharmaceutical preparation is a chemical substance approved for use in the medical diagnosis, cure, treatment, or prevention of disease. SIO_010039 - + - :arce738b715 + :arc8c98b715 @@ -17720,18 +17750,18 @@ of endpoints (a start point and an endpoint). protein - + A protein is an organic polymer that is composed of one or more linear polymers of amino acids. CHEBI:36080 SIO_010043 - + - :arce738b716 + :arc8c98b716 @@ -17756,8 +17786,8 @@ of endpoints (a start point and an endpoint). biological entity - A biological entity is a heterogeneous substance that contains genomic material or is the product of a biological process. chemical- + A biological entity is a heterogeneous substance that contains genomic material or is the product of a biological process. SIO_010046 @@ -17840,17 +17870,17 @@ of endpoints (a start point and an endpoint). strain - + A strain is a genetic variant or kind of microorganism. SIO_010055 - + - :arce738b717 + :arc8c98b717 @@ -17865,29 +17895,29 @@ of endpoints (a start point and an endpoint). life status - + life status is the quality of whether something is alive or dead. SIO_010057 - + - - :arce738b718 + + :arc8c98b718 - + - - :arce738b719 + + :arc8c98b719 - + - :arce738b720 + :arc8c98b720 @@ -17985,186 +18015,186 @@ of endpoints (a start point and an endpoint). organic submolecule - - + + An organic submolecule is connected region of a molecule. SIO_010071 - + - - :arce738b721 + + :arc8c98b721 - - - - :arce738b723 + + + + :arc8c98b723 - + - :arce738b722 + :arc8c98b722 - - + + - :arce738b725 + :arc8c98b725 - + - :arce738b724 + :arc8c98b724 - + - :arce738b726 + :arc8c98b726 organic molecule - + An organic molecular entity is a chemical entity composed of organic atoms (at least carbon, hydrogen, and optionally oxygen, phosphorus, nitrogen) SIO_010072 - + - - :arce738b727 + + :arc8c98b727 - - - - :arce738b729 + + + + :arc8c98b729 - + - :arce738b728 + :arc8c98b728 - - + + - :arce738b731 + :arc8c98b731 - + - :arce738b730 + :arc8c98b730 open reading frame - - + + An open reading frame (ORF) is a part of a gene that encodes a protein but does not contain a stop codon. SIO_010073 - - - - - :arce738b732 + + + + :arc8c98b732 - - - - :arce738b733 + + + + :arc8c98b734 - - - - :arce738b734 + + + + + 1 + :arc8c98b733 - - + + - :arce738b736 + :arc8c98b736 - + - - - :arce738b735 + + + 1 + :arc8c98b735 - - - - :arce738b737 + + + + + :arc8c98b737 - - - - :arce738b739 + + + + :arc8c98b738 - - - - - 1 - :arce738b738 + + + + :arc8c98b739 - - + + - :arce738b741 + :arc8c98b741 - + - - - 1 - :arce738b740 + + + :arc8c98b740 amino acid residue - + An amino acid residue is a part of a molecule that is derived from an amino acid molecule. SIO_010074 - + - :arce738b742 + :arc8c98b742 @@ -18198,51 +18228,51 @@ of endpoints (a start point and an endpoint). operon - - - - An operon is a collection of contiguous genes transcribed as a single (polycistronic) mRNA. + + + SO:0000178 + An operon is a collection of contiguous genes transcribed as a single (polycistronic) mRNA. SIO_010084 - - - - - :arce738b743 - - - + - :arce738b744 + :arc8c98b743 - + - :arce738b745 + :arc8c98b744 + + + + + + + :arc8c98b745 gene regulatory component - + A gene regulatory component is a gene component that exerts a regulatory function. SIO_010085 - + - :arce738b746 + :arc8c98b746 @@ -18303,35 +18333,35 @@ of endpoints (a start point and an endpoint). deoxyribonucleic acid template - + A deoxyribonucleic acid template is a deoxyribonucleic acid that provides the template to synthesize a complementary strand of DNA through transcription. SIO_010092 - + - - :arce738b747 + + :arc8c98b747 - + - - :arce738b748 + + :arc8c98b748 - + - - :arce738b749 + + :arc8c98b749 - + - :arce738b750 + :arc8c98b750 @@ -18339,17 +18369,17 @@ of endpoints (a start point and an endpoint). deoxyribonucleic acid primer - + A deoxyribonucleic acid primer is a deoxyribonucleic acid that enables the synthesis of a complement strand of DNA by binding to it and acting as a point of transcription initiation. SIO_010093 - + - :arce738b751 + :arc8c98b751 @@ -18365,206 +18395,206 @@ of endpoints (a start point and an endpoint). RNA transcript component - - + + An RNA transcript component is a region of an RNA transcript. SIO_010095 - + - :arce738b752 + :arc8c98b752 - + - :arce738b753 + :arc8c98b753 mature mRNA - - - - + + + + A mature RNA is a ribonucleic acid that contains an untranslated region (UTR) and protein coding sequence and lacks introns. SIO_010096 - + - - - :arce738b754 + + + :arc8c98b754 - + - - :arce738b755 + + :arc8c98b755 - + - :arce738b756 + :arc8c98b756 - + - - - :arce738b757 + + + :arc8c98b757 - + - - :arce738b758 + + :arc8c98b758 - + - :arce738b759 + :arc8c98b759 pre-mRNA - + Precursor mRNA (pre-mRNA) is a single strand of messenger ribonucleic acid (mRNA) that is synthesized from a DNA template throught transcription. SIO_010097 - + - :arce738b760 + :arc8c98b760 mRNA splice variant - + An mRNA splice variant is an mRNA molecule that varies from another mRNA molecule of the same gene origin but having a different final sequence due to differences in its assembly from splice sites. SIO_010098 - + - - :arce738b761 + + :arc8c98b761 - + - - :arce738b762 + + :arc8c98b762 - + - - :arce738b763 + + :arc8c98b763 - - + + - :arce738b765 + :arc8c98b765 - + - :arce738b764 + :arc8c98b764 messenger RNA - + A messenger RNA is a ribonucleic acid that contains an untranslated region (UTR) and protein coding sequence and lacks introns. SIO_010099 - + - :arce738b766 + :arc8c98b766 dna gene - + A gene that is located on DNA. SIO_010100 - + - :arce738b767 + :arc8c98b767 rna gene - + A gene that is located on RNA. SIO_010101 - + - :arce738b768 + :arc8c98b768 allele - + An allele is one of a set of sequence variants of a gene. SIO_010277 - + - :arce738b769 + :arc8c98b769 @@ -18580,18 +18610,18 @@ of endpoints (a start point and an endpoint). chemical transport - + biopax:Transport chemical transport is the directed movement of a chemical entity by some agent (e.g. transporter). SIO_010283 - + - :arce738b770 + :arc8c98b770 @@ -18608,34 +18638,34 @@ of endpoints (a start point and an endpoint). molecular complex formation - + molecular complex formation is the process of forming a molecular complex from its constituent parts. SIO_010285 - + - :arce738b771 + :arc8c98b771 molecular complex dissociation - + molecular complex disassociation is the process of dissambly of a molecular complex into its constitutent parts. SIO_010286 - + - :arce738b772 + :arc8c98b772 @@ -18651,35 +18681,35 @@ of endpoints (a start point and an endpoint). biochemical activation - + biochemical activation is a molecular interaction that increases the catalytic rate of the target enzyme. SIO_010288 - + - :arce738b773 + :arc8c98b773 biochemical inhibition - + biochemical inhibition is a molecular interaction that decreases the catalytic rate of the target enzyme. SIO_010289 - + - :arce738b774 + :arc8c98b774 @@ -18716,117 +18746,117 @@ of endpoints (a start point and an endpoint). disease - + disease is the outward manifestation of one or more disorders. SIO_010299 - + - - :arce738b775 + + :arc8c98b775 - + - - :arce738b776 + + :arc8c98b776 - + - - :arce738b777 + + :arc8c98b777 - - + + - :arce738b779 + :arc8c98b779 - + - :arce738b778 + :arc8c98b778 transcription - - + + transcription is the process of creating a complementary RNA copy of a sequence of DNA. SIO_010300 - + - :arce738b780 + :arc8c98b780 - + - - :arce738b781 + + :arc8c98b781 - + - - :arce738b782 + + :arc8c98b782 - + - - :arce738b783 + + :arc8c98b783 - - + + - :arce738b785 + :arc8c98b785 - + - :arce738b784 + :arc8c98b784 translation - - + + translation is the process of producing a polypeptide from a ribonucleic acid by a ribosome. SIO_010301 - + - :arce738b786 + :arc8c98b786 - + - :arce738b787 + :arc8c98b787 @@ -18870,42 +18900,42 @@ of endpoints (a start point and an endpoint). carbohydrate residue - + A carbohydrate residue is a part of a molecule that was derived from a monosaccharide molecule. SIO_010334 - + - :arce738b788 + :arc8c98b788 nucleic acid part - - + + A nucleic acid part is a component of a nucleic acid. SIO_010335 - + - - - :arce738b789 + + + :arc8c98b789 - + - - - :arce738b790 + + + :arc8c98b790 @@ -18931,17 +18961,17 @@ of endpoints (a start point and an endpoint). pharmaceutical component - + A pharmaceutical component is a part of a pharmaceutical preparation. SIO_010338 - + - :arce738b791 + :arc8c98b791 @@ -18957,184 +18987,184 @@ of endpoints (a start point and an endpoint). covalently connected entity - - + + A covalently connected molecular entity is the mereological sum of a collection of covalently bonded atoms. SIO_010341 - - - - - :arce738b792 - - - + - - :arce738b793 + + :arc8c98b792 - + - - :arce738b794 + + :arc8c98b793 - + - - :arce738b795 + + :arc8c98b794 - - + + - :arce738b797 + :arc8c98b796 - + - :arce738b796 + :arc8c98b795 + + + + + + + :arc8c98b797 chemical complex - + A chemical complex is a chemical entity composed of a weakly connected ions or molecules. SIO_010342 - + - - :arce738b798 + + :arc8c98b798 - + - :arce738b799 + :arc8c98b799 enzyme - + - + An enzyme is a protein or protein complex that realizes its disposition to covalently modify some molecule during a chemical reaction. SIO_010343 - + - - :arce738b800 + + :arc8c98b800 - - - - :arce738b802 + + + + :arc8c98b802 - + - - :arce738b801 + + :arc8c98b801 - + - - :arce738b803 + + :arc8c98b803 - + - :arce738b804 + :arc8c98b804 - - + + - :arce738b806 + :arc8c98b806 - + - - :arce738b805 + + :arc8c98b805 - + - - :arce738b807 + + :arc8c98b807 - + - - :arce738b808 + + :arc8c98b808 - - - - :arce738b810 + + + + :arc8c98b810 - + - :arce738b809 + :arc8c98b809 - - + + - :arce738b812 + :arc8c98b812 - + - :arce738b811 + :arc8c98b811 - + - - :arce738b813 + + :arc8c98b813 - + - - :arce738b814 + + :arc8c98b814 - + - :arce738b815 + :arc8c98b815 @@ -19150,59 +19180,59 @@ of endpoints (a start point and an endpoint). chemical reaction - + A chemical reaction is a process that leads to the transformation of one set of chemical substances to another. SIO_010345 - + - - :arce738b816 + + :arc8c98b816 - - - - :arce738b818 + + + + :arc8c98b818 - + - :arce738b817 + :arc8c98b817 - - + + - :arce738b820 + :arc8c98b820 - + - :arce738b819 + :arc8c98b819 organic polymer - + An organic polymer is an organic molecule composed of connected set of monomeric units. SIO_010346 - + - :arce738b821 + :arc8c98b821 @@ -19289,95 +19319,95 @@ of endpoints (a start point and an endpoint). substrate - + A substrate is a molecule that is consumed in the course of a biochemical reaction. SIO_010362 - + - - :arce738b822 + + :arc8c98b822 - + - - :arce738b823 + + :arc8c98b823 - - - - :arce738b825 + + + + :arc8c98b825 - + - :arce738b824 + :arc8c98b824 - - + + - :arce738b827 + :arc8c98b827 - + - :arce738b826 + :arc8c98b826 product - + SIO_010363 - + - - :arce738b828 + + :arc8c98b828 - + - - :arce738b829 + + :arc8c98b829 - - - - :arce738b831 + + + + :arc8c98b831 - + - :arce738b830 + :arc8c98b830 - - + + - :arce738b833 + :arc8c98b833 - + - :arce738b832 + :arc8c98b832 @@ -19483,19 +19513,19 @@ of endpoints (a start point and an endpoint). multicellular organism - + A multi-cellular organism is an organism that consists of more than one cell. SIO_010375 - + 2 - :arce738b834 + :arc8c98b834 @@ -19503,29 +19533,29 @@ of endpoints (a start point and an endpoint). unicellular organism - + A unicellular organism is a organism that is composed of a single cell. SIO_010376 - + - - :arce738b835 + + :arc8c98b835 - + - :arce738b836 + :arc8c98b836 cellular organism - + A cellular organism is an organism that contains one or more cells. @@ -19533,22 +19563,22 @@ of endpoints (a start point and an endpoint). - + - - :arce738b837 + + :arc8c98b837 - + - - :arce738b838 + + :arc8c98b838 - + - :arce738b839 + :arc8c98b839 @@ -19581,36 +19611,36 @@ of endpoints (a start point and an endpoint). specialized material entity - + A specialized material entity is a material entity that is defined by having some quality, role or capability. SIO_010410 - + - - :arce738b840 + + :arc8c98b840 - + - - :arce738b841 + + :arc8c98b841 - - + + - :arce738b843 + :arc8c98b843 - + - :arce738b842 + :arc8c98b842 @@ -19697,34 +19727,34 @@ of endpoints (a start point and an endpoint). target - + SIO_010423 - + - - :arce738b844 + + :arc8c98b844 - + - - :arce738b845 + + :arc8c98b845 - - + + - :arce738b847 + :arc8c98b847 - + - :arce738b846 + :arc8c98b846 @@ -19803,60 +19833,60 @@ of endpoints (a start point and an endpoint). ligand - + A ligand is a molecule that is part of a complex by weakly interacting with another molecule. SIO_010432 - + - - :arce738b848 + + :arc8c98b848 - + - - :arce738b849 + + :arc8c98b849 - - + + - :arce738b851 + :arc8c98b851 - + - - :arce738b850 + + :arc8c98b850 - - - - :arce738b853 + + + + :arc8c98b853 - + - :arce738b852 + :arc8c98b852 - - + + - :arce738b855 + :arc8c98b855 - + - :arce738b854 + :arc8c98b854 @@ -19890,17 +19920,17 @@ of endpoints (a start point and an endpoint). molecular regulator - + A molecular regulator is a molecule that regulates the function of another chemical entity. SIO_010436 - + - :arce738b856 + :arc8c98b856 @@ -19943,87 +19973,87 @@ of endpoints (a start point and an endpoint). submolecule - - + + A submolecule is a mereological sum of covalently bonded atoms. SIO_010441 - + - - - :arce738b857 + + + :arc8c98b857 - + - - - :arce738b858 + + + :arc8c98b858 charge quality - + charge quality is the quality pertaining to electric charge. SIO_010442 - + - - :arce738b859 + + :arc8c98b859 - + - - :arce738b860 + + :arc8c98b860 - + - :arce738b861 + :arc8c98b861 intron - + An intron is a region of a gene that is removed from the final protein open reading frame. SIO_010443 - + - :arce738b862 + :arc8c98b862 gene component - + A gene component is a component of a gene. SIO_010444 - + - :arce738b863 + :arc8c98b863 @@ -20058,59 +20088,59 @@ of endpoints (a start point and an endpoint). stop codon - + A stop codon (or termination codon) is a nucleotide triplet within messenger RNA that signals a termination of translation. SIO_010448 - + - :arce738b864 + :arc8c98b864 RNA transcript - + An RNA transcript is an RNA molecule that is produced from transcription of a nucleic acid template. SIO_010450 - + - - :arce738b865 + + :arc8c98b865 - + - - :arce738b866 + + :arc8c98b866 - + - - :arce738b867 + + :arc8c98b867 - - + + - :arce738b869 + :arc8c98b869 - + - :arce738b868 + :arc8c98b868 @@ -20152,191 +20182,191 @@ of endpoints (a start point and an endpoint). isomer - + An isomer is a molecule that is compositionally identical to another molecule as a result of a different atomic connectivity. SIO_010455 - + - - :arce738b870 + + :arc8c98b870 - + - - :arce738b871 + + :arc8c98b871 - - + + - :arce738b873 + :arc8c98b873 - + - :arce738b872 + :arc8c98b872 ion - + An ion is an atom or molecule in which the total number of electrons is not equal to the total number of protons, giving it a net positive or negative electrical charge. SIO_010456 - + - - :arce738b874 + + :arc8c98b874 - - - - :arce738b876 + + + + :arc8c98b876 - + - - :arce738b875 + + :arc8c98b875 - + - - :arce738b877 + + :arc8c98b877 - + - :arce738b878 + :arc8c98b878 - - + + - :arce738b880 + :arc8c98b880 - + - :arce738b879 + :arc8c98b879 cation - + An anion is an atom or molecule with a net positive electrical charge. SIO_010457 - + - - :arce738b881 + + :arc8c98b881 - + - - :arce738b882 + + :arc8c98b882 - - + + - :arce738b884 + :arc8c98b884 - + - :arce738b883 + :arc8c98b883 anion - + An anion is an atom or molecule with a net negative electrical charge. SIO_010458 - + - - :arce738b885 + + :arc8c98b885 - + - - :arce738b886 + + :arc8c98b886 - - + + - :arce738b888 + :arc8c98b888 - + - :arce738b887 + :arc8c98b887 polar solvent - + A polar solvent is a solvent that exhibits a polar quality. SIO_010459 - + - :arce738b889 + :arc8c98b889 nonpolar solvent - + A non-polar solvent is a solvent that exhibits a non-polar quality. SIO_010460 - + - :arce738b890 + :arc8c98b890 @@ -20428,18 +20458,18 @@ and having their side chains perpendicular to the planar axis. protein complex - + A protein complex is a molecular complex composed of at least two polypeptide chains. SIO_010497 - + 2 - :arce738b891 + :arc8c98b891 @@ -20518,43 +20548,43 @@ and having their side chains perpendicular to the planar axis. molecular complex - + A molecular complex is a chemical complex composed of weakly interacting molecular entities, and excludes bulk solvent. SIO_010506 - + - - :arce738b892 + + :arc8c98b892 - - - - :arce738b894 + + + + :arc8c98b894 - + - :arce738b893 + :arc8c98b893 - - + + - :arce738b896 + :arc8c98b896 - + 2 - :arce738b895 + :arc8c98b895 @@ -20570,109 +20600,109 @@ and having their side chains perpendicular to the planar axis. catalyzed reaction - + A catalyzed reaction is a chemical reaction that is facilitated by a catalyst. SIO_010508 - + - :arce738b897 + :arc8c98b897 redox reaction - + A redox reaction is a chemical reaction in which there is a net movement of electrons from one reactant to another. SIO_010509 - + - - :arce738b898 + + :arc8c98b898 - - - - :arce738b900 + + + + :arc8c98b900 - + - - :arce738b899 + + :arc8c98b899 - + - - :arce738b901 + + :arc8c98b901 - + - - :arce738b902 + + :arc8c98b902 - - + + - :arce738b904 + :arc8c98b904 - + - :arce738b903 + :arc8c98b903 - - + + - :arce738b906 + :arc8c98b906 - + - - :arce738b905 + + :arc8c98b905 - + - - :arce738b907 + + :arc8c98b907 - + - - :arce738b908 + + :arc8c98b908 - - + + - :arce738b910 + :arc8c98b910 - + - :arce738b909 + :arc8c98b909 @@ -20816,40 +20846,40 @@ and having their side chains perpendicular to the planar axis. chemical reaction pathway - - - + + + A chemical reaction pathway specifies a series of chemical reactions towards producing some chemical product. SIO_010526 - + - :arce738b911 + :arc8c98b911 - - - - - :arce738b912 - - - + - - :arce738b913 + + :arc8c98b912 - + - :arce738b914 + :arc8c98b913 + + + + + + + :arc8c98b914 @@ -20920,18 +20950,18 @@ and having their side chains perpendicular to the planar axis. binary compound - + A binary compound is a mereological maximum sum of two kinds of weakly connected entities. SIO_010674 - + 2 - :arce738b915 + :arc8c98b915 @@ -20982,38 +21012,38 @@ and having their side chains perpendicular to the planar axis. ring - + - + A ring is a submolecule with a circular topology. SIO_010780 - + - - :arce738b916 + + :arc8c98b916 - + - - :arce738b917 + + :arc8c98b917 - + - :arce738b918 + :arc8c98b918 - + 3 - :arce738b919 + :arc8c98b919 @@ -21048,27 +21078,27 @@ and having their side chains perpendicular to the planar axis. ionic compound - - + + An ionic compound is a mereological maximal sum of weakly connected paired positive and negative ions. SIO_010784 - + - + 1 - :arce738b920 + :arc8c98b920 - + - + 1 - :arce738b921 + :arc8c98b921 @@ -21084,17 +21114,17 @@ and having their side chains perpendicular to the planar axis. carbon allotrope - + A carbon allotrope is a chemical substance composed of carbon. SIO_010786 - + - :arce738b922 + :arc8c98b922 @@ -22238,103 +22268,103 @@ and having their side chains perpendicular to the planar axis. covalent bond - - A covalent bond is a strong submolecular interaction between atoms. + CHEMINF:000063 + A covalent bond is a strong submolecular interaction between atoms. SIO_011118 - + 2 - :arce738b923 + :arc8c98b923 biomolecular structure descriptor - + A biomolecular structure descriptor is structure description for organic compounds. SIO_011119 - + - :arce738b924 + :arc8c98b924 molecular structure file - - - + + + A molecular structure file is a file that contains a description of molecular structure. SIO_011120 - + - - :arce738b925 + + :arc8c98b925 - + - - - :arce738b926 + + + :arc8c98b926 - + - - - :arce738b927 + + + :arc8c98b927 molecular structure descriptor - - + + CHEMINF:000085 molecular structure descriptor is data that describes some aspect of the molecular structure (composition) and is about some chemical entity. SIO_011121 - + - :arce738b928 + :arc8c98b928 - + - :arce738b929 + :arc8c98b929 chemical data - A chemical datum is a scientific data item which conforms to some specification, either for how it is calculated or for how it is measured, and is commonly used in the domain of chemistry to name and differentiate different numeric properties (both calculated and measured) which are about chemical entities. CHEMINF:000123 + A chemical datum is a scientific data item which conforms to some specification, either for how it is calculated or for how it is measured, and is commonly used in the domain of chemistry to name and differentiate different numeric properties (both calculated and measured) which are about chemical entities. SIO_011123 @@ -22343,24 +22373,24 @@ and having their side chains perpendicular to the planar axis. molecule - + A molecule is the mereological maximal sum of a collection of covalently bonded atoms. CHEBI:23367 SIO_011125 - + - :arce738b930 + :arc8c98b930 chemical substance - + A chemical substance is a chemical complex of weakly interacting molecular entities, and may include bulk solvent. CHEMINF:440533 @@ -22368,22 +22398,22 @@ and having their side chains perpendicular to the planar axis. - + - - :arce738b931 + + :arc8c98b931 - + - - :arce738b932 + + :arc8c98b932 - + - :arce738b933 + :arc8c98b933 @@ -22399,569 +22429,569 @@ and having their side chains perpendicular to the planar axis. collection of 3d molecular structure models - + A collection of 3D molecular structure models is just that. SIO_011131 - + - :arce738b934 + :arc8c98b934 - + - - :arce738b935 + + :arc8c98b935 - - - - :arce738b936 + + + + :arc8c98b936 - - - - :arce738b937 + + + + :arc8c98b937 - - - - :arce738b938 + + + + :arc8c98b938 - - - - :arce738b939 + + + + :arc8c98b939 - - - - :arce738b940 + + + + :arc8c98b940 - - - - :arce738b941 + + + + :arc8c98b941 - - - - :arce738b942 + + + + :arc8c98b942 - - - - :arce738b943 + + + + :arc8c98b943 - - - - :arce738b944 + + + + :arc8c98b944 - - - - :arce738b945 + + + + :arc8c98b945 - - - - :arce738b946 + + + + :arc8c98b946 - - - - :arce738b947 + + + + :arc8c98b947 - - + + - :arce738b948 + :arc8c98b948 - + - - :arce738b949 + + :arc8c98b949 - - - - :arce738b950 + + + + :arc8c98b950 - - - - :arce738b951 + + + + :arc8c98b951 - - + + - :arce738b952 + :arc8c98b952 - + - - :arce738b953 + + :arc8c98b953 - - - - :arce738b954 + + + + :arc8c98b954 - - - - :arce738b955 + + + + :arc8c98b955 - - - - :arce738b956 + + + + :arc8c98b956 - - - - :arce738b957 + + + + :arc8c98b957 - - - - :arce738b958 + + + + :arc8c98b958 - 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An emotion is a process (experience) that arises internally or from an involuntary physiological response to a stimulus. - emotion++ - + emotion++ + An emotion is a process (experience) that arises internally or from an involuntary physiological response to a stimulus. + intent - intent is a desire to realize a particular outcome. - + intent is a desire to realize a particular outcome. + anger - anger is disgust directed toward an equal status individual. - + anger is disgust directed toward an equal status individual. + hate - Hate is a deep and emotional extreme dislike, directed against a certain object or class of objects. - + Hate is a deep and emotional extreme dislike, directed against a certain object or class of objects. + love - love is an emotion of a strong affection and personal attachment. - + love is an emotion of a strong affection and personal attachment. + affection - affection is an emotion characterized with a feeling or type of love for another living thing. - + affection is an emotion characterized with a feeling or type of love for another living thing. + angst - angst is the intense feeling of apprehension, anxiety or inner turmoil. - + angst is the intense feeling of apprehension, anxiety or inner turmoil. + annoyance - Annoyance is an unpleasant emtion that is characterized by a abnormal or excessive sensitivity to some external stimulus. - + Annoyance is an unpleasant emtion that is characterized by a abnormal or excessive sensitivity to some external stimulus. + anxiety - anxiety is an emotion charactersized by intense feeling of fear and concern coupled with a physical response. - + anxiety is an emotion charactersized by intense feeling of fear and concern coupled with a physical response. + apathy - apathy is an emotion characterized by lack of interest, enthusiasm, or concern. - + apathy is an emotion characterized by lack of interest, enthusiasm, or concern. + arousal - arousal is an emotion characterized by state of reactive to stimuli. It involves the activation of the reticular activating system in the brain stem, the autonomic nervous system and the endocrine system, leading to increased heart rate and blood pressure and a condition of sensory alertness, mobility and readiness to respond. - + arousal is an emotion characterized by state of reactive to stimuli. It involves the activation of the reticular activating system in the brain stem, the autonomic nervous system and the endocrine system, leading to increased heart rate and blood pressure and a condition of sensory alertness, mobility and readiness to respond. + awe - awe is an emotion produced by that which is grand, sublime or powerful and is characterized by a combination of joy, fear and admiration/reverence/respect. - + awe is an emotion produced by that which is grand, sublime or powerful and is characterized by a combination of joy, fear and admiration/reverence/respect. + boldness - boldness is the trait of being willing to undertake things that involve risk or danger. - + boldness is the trait of being willing to undertake things that involve risk or danger. + boredom - boredom is the emotion experience by those not interested in their surroundings or available activities. - + boredom is the emotion experience by those not interested in their surroundings or available activities. + contempt - contempt is disgust towards a lower status individual. - + contempt is disgust towards a lower status individual. + contentment - contentment is an emotion characterized by acknowledgement and satisfaction of the current state of affairs. - + contentment is an emotion characterized by acknowledgement and satisfaction of the current state of affairs. + curiosity - curiosity is the strong desire to know or learn something. - + curiosity is the strong desire to know or learn something. + depression - depressed - depression is an unpleasant emotion linked to aversion to activity that can affect a person's thoughts, behavior, feelings and physical well-being. Depressed individuals may feel sad, anxious, empty, hopeless, worried, helpless, worthless, guilty, irritable, or restless. - + depressed + depression is an unpleasant emotion linked to aversion to activity that can affect a person's thoughts, behavior, feelings and physical well-being. Depressed individuals may feel sad, anxious, empty, hopeless, worried, helpless, worthless, guilty, irritable, or restless. + desire - desire is a strong emotion of wanting to have something or wishing for something to happen. - + desire is a strong emotion of wanting to have something or wishing for something to happen. + despair - despair is depression, hopelessness or lack of hope. - + despair is depression, hopelessness or lack of hope. + disappointment - disappointing - disappointed - disappointment is the feeling of dissatisfaction that follows the failure of expectations or hopes to manifest. - + disappointed + disappointing + disappointment is the feeling of dissatisfaction that follows the failure of expectations or hopes to manifest. + disgust - Disgust is a feeling of revulsion or profound disapproval aroused by something unpleasant or offensive. - + Disgust is a feeling of revulsion or profound disapproval aroused by something unpleasant or offensive. + dread - dread is the instense negative emotion that induces fear and apprehension. - + dread is the instense negative emotion that induces fear and apprehension. + ecstasy - ecstacy is an emotion characterized by a heightened state of consciousness with total involvement of a subject. - + ecstacy is an emotion characterized by a heightened state of consciousness with total involvement of a subject. + positive emotion - A positive emotion is an emotion that feels good. - + A positive emotion is an emotion that feels good. + negative emotion - negative emotion is an emotion that does not feel good. - + negative emotion is an emotion that does not feel good. + embarassment - Embarrassment is the emotion of intense discomfort with oneself, experienced upon having a socially unacceptable act or condition witnessed by or revealed to other. - + Embarrassment is the emotion of intense discomfort with oneself, experienced upon having a socially unacceptable act or condition witnessed by or revealed to other. + envy - envy is an emotion that occurs when a person lacks another's (perceived) superior quality, achievement or possession and wishes that the other lacked it. - + envy is an emotion that occurs when a person lacks another's (perceived) superior quality, achievement or possession and wishes that the other lacked it. + euphoria - euphoria is an emotion characterized by intense feelings of well-being, elation, happiness, ecstasy, excitement, and joy. - + euphoria is an emotion characterized by intense feelings of well-being, elation, happiness, ecstasy, excitement, and joy. + excitement - excitement is a positive emotion of feeling great enthusiasm and eagerness. - + excitement is a positive emotion of feeling great enthusiasm and eagerness. + fear - Fear is a negative emotion induced by a perceived threat that induces one to hide or move quickly away from the location of the perceived threat. - + Fear is a negative emotion induced by a perceived threat that induces one to hide or move quickly away from the location of the perceived threat. + frustration - Frustration is an emotion that arises from the perceived resistance to the fulfillment of individual will. - + Frustration is an emotion that arises from the perceived resistance to the fulfillment of individual will. + gratitude - gratification - appreciation - thankfullness - gratefulness - Gratitude, thankfulness, gratefulness, or appreciation is a feeling, emotion or attitude in acknowledgment of a benefit that one has received or will receive. - + gratification + gratefulness + thankfullness + appreciation + Gratitude, thankfulness, gratefulness, or appreciation is a feeling, emotion or attitude in acknowledgment of a benefit that one has received or will receive. + happiness - happiness is an emotion characterized by positive or pleasant emotions ranging from contentment to intense joy. - + happiness is an emotion characterized by positive or pleasant emotions ranging from contentment to intense joy. + guilt - guilty - Guilt is the emotion borne from feeling responsible for the commission of an offense and arises out of public humiliation. - + Guilt is the emotion borne from feeling responsible for the commission of an offense and arises out of public humiliation. + guilty + grief - grief is an emotion in response to loss, whether physical or abstract including death, unemployment, ill health or the end of a relationship. - + grief is an emotion in response to loss, whether physical or abstract including death, unemployment, ill health or the end of a relationship. + hope - hope is an emotion of belief in a positive outcome related to events and circumstances in one's life. - + hope is an emotion of belief in a positive outcome related to events and circumstances in one's life. + hostility - Hostility is the intense negative emotion of being in conflict or opposition to someone or something. - + Hostility is the intense negative emotion of being in conflict or opposition to someone or something. + hurt - hurt is an unpleasant feeling, emotion or sensation. - + hurt is an unpleasant feeling, emotion or sensation. + hysteria - Hysteria is an unmanageable emotion. - + Hysteria is an unmanageable emotion. + indifference - indifference is an emotion characterized by lack of interest, concern, or sympathy. - + indifference is an emotion characterized by lack of interest, concern, or sympathy. + interest - interest is the emotion of wanting to know or learn about something or someone. - + interest is the emotion of wanting to know or learn about something or someone. + jealousy - jealousy is an emotion and typically refers to the negative thoughts and feelings of insecurity, fear, and anxiety over an anticipated loss of something that the person values, particularly in reference to a human connection. - + jealousy is an emotion and typically refers to the negative thoughts and feelings of insecurity, fear, and anxiety over an anticipated loss of something that the person values, particularly in reference to a human connection. + joy - joy is an emotion of intense happiness. - + joy is an emotion of intense happiness. + loathing - loathing is an intense dislike or disgust. - + loathing is an intense dislike or disgust. + loneliness - Loneliness is an unpleasant emotion in which a person feels a strong sense of emptiness, yearning distress and solitude resulting from inadequate quantity or quality of social relationships. - + Loneliness is an unpleasant emotion in which a person feels a strong sense of emptiness, yearning distress and solitude resulting from inadequate quantity or quality of social relationships. + lust - lust is the strong desire for sex. - + lust is the strong desire for sex. + misery - misery is a feeling of great unhappiness, suffering and/or pain. - + misery is a feeling of great unhappiness, suffering and/or pain. + panic - Panic is a sudden emotion of fear which is so strong as to dominate or prevent reason and logical thinking, replacing it with overwhelming feelings of anxiety and frantic agitation consistent with an animalistic fight-or-flight reaction. - + Panic is a sudden emotion of fear which is so strong as to dominate or prevent reason and logical thinking, replacing it with overwhelming feelings of anxiety and frantic agitation consistent with an animalistic fight-or-flight reaction. + passion - passion is the intense desire for something. - + passion is the intense desire for something. + pity - Pity is the emotion of sadness or sorrow for another. - + Pity is the emotion of sadness or sorrow for another. + pleasure - pleasure is an emotion of happy satisfaction and enjoyment. - + pleasure is an emotion of happy satisfaction and enjoyment. + pride - pride is an emotion of satisfaction of attachment toward one's own or another's choices and actions, or toward a whole group of people, and is a product of praise, independent self-reflection, or a fulfilled feeling of belonging. - + pride is an emotion of satisfaction of attachment toward one's own or another's choices and actions, or toward a whole group of people, and is a product of praise, independent self-reflection, or a fulfilled feeling of belonging. + rage - Rage is a feeling of intense anger that is associated with the Fight-or-flight response. - + Rage is a feeling of intense anger that is associated with the Fight-or-flight response. + regret - regret is a feeling of sadness, repentance, or disappointment over something that has happened or been done. - + regret is a feeling of sadness, repentance, or disappointment over something that has happened or been done. + remorse - remorse is an emotion of personal regret felt by a person after he or she has committed an act which they deem to be shameful, hurtful, or violent. - + remorse is an emotion of personal regret felt by a person after he or she has committed an act which they deem to be shameful, hurtful, or violent. + sadness - unhappiness - sad - unhappy - sadness is emotional pain associated with, or characterized by feelings of disadvantage, loss, despair, helplessness, sorrow, and rage. - + unhappiness + sad + unhappy + sadness is emotional pain associated with, or characterized by feelings of disadvantage, loss, despair, helplessness, sorrow, and rage. + satisfaction - satisfaction is an emotion of fulfillment of one's wishes, expectations, or needs, or the pleasure derived from this. - + satisfaction is an emotion of fulfillment of one's wishes, expectations, or needs, or the pleasure derived from this. + shame - shame is the emotion borne from feeling responsible for the commission of an offense. - + shame is the emotion borne from feeling responsible for the commission of an offense. + shock - shock is an emotion of sudden upset or surprise. - + shock is an emotion of sudden upset or surprise. + shyness - shyness is an emotion of apprehension, lack of comfort, or awkwardness experienced when in proximity to, approaching, or being approached by other individuals, especially in new situations or with unfamiliar individuals. - + shyness is an emotion of apprehension, lack of comfort, or awkwardness experienced when in proximity to, approaching, or being approached by other individuals, especially in new situations or with unfamiliar individuals. + sorrow - sorrow is the emotion that is characterized by a long term state of intense sadness, distress and a degree of resignation (not accepting). - + sorrow is the emotion that is characterized by a long term state of intense sadness, distress and a degree of resignation (not accepting). + suffering - Suffering is the unpleasant emotion and aversion associated with the perception of harm or threat of harm in an individual. - + Suffering is the unpleasant emotion and aversion associated with the perception of harm or threat of harm in an individual. + surprise - surprise is a brief emotion experienced as the result of an unexpected event. - + surprise is a brief emotion experienced as the result of an unexpected event. + terror - terror is the extreme feeling of fear. - + terror is the extreme feeling of fear. + wonder - wonder is an emotion of perceiving something very rare or unexpected, but not threatening. - + wonder is an emotion of perceiving something very rare or unexpected, but not threatening. + worry - worry is the emotion characterized by concer over a real or imaginary issue. - + worry is the emotion characterized by concer over a real or imaginary issue. + apprehension - apprehension is the negative emotion that something unpleasant will occur. - + apprehension is the negative emotion that something unpleasant will occur. + resentment - resentment is disgust directed toward a higher status individual. - + resentment is disgust directed toward a higher status individual. + pain - Pain is an unpleasant sensory and emotional experience associated with actual or potential tissue damage, or described in terms of such damage. - + Pain is an unpleasant sensory and emotional experience associated with actual or potential tissue damage, or described in terms of such damage. + behaviour - Behaviour is the set of actions and mannerisms made by systems (biological or otherwise) in response to stimuli or inputs, whether internal or external, conscious or subconscious, overt or covert, and voluntary or involuntary. - core - behaviour+ - + behaviour+ + core + Behaviour is the set of actions and mannerisms made by systems (biological or otherwise) in response to stimuli or inputs, whether internal or external, conscious or subconscious, overt or covert, and voluntary or involuntary. + humiliation - Humiliation is the abasement of pride, which creates mortification or leads to a state of being humbled or reduced to lowliness or submission. - + Humiliation is the abasement of pride, which creates mortification or leads to a state of being humbled or reduced to lowliness or submission. + hunger - hunger is the craving for food. - + hunger is the craving for food. + discouragement - Discouragement is the emtion of having lost confidence or enthusiasm. - discouraged - + discouraged + Discouragement is the emtion of having lost confidence or enthusiasm. + satisfaction - contentment - pleasure - satisfaction is the emotion of fulfillling one's wishes, expectations, or needs. - + pleasure + contentment + satisfaction is the emotion of fulfillling one's wishes, expectations, or needs. + suicidal - suicidal is the emotion of being deeply unhappy or depressed with thoughts of killing one's self. - + suicidal is the emotion of being deeply unhappy or depressed with thoughts of killing one's self. + irritability - irritability is the negative emotion of quick excitability to annoyance, impatience, or anger. - irritable - + irritability is the negative emotion of quick excitability to annoyance, impatience, or anger. + irritable + indecision - indecisiveness - indecision is the emotion of being unable to choose between two or more possible courses of action. - + indecision is the emotion of being unable to choose between two or more possible courses of action. + indecisiveness + - sio-v1.0.16-behaviour-subset.owl - - + sio-v1.17.0-behaviour-subset.owl + + \ No newline at end of file diff --git a/ontology/sio/release/sio-subset-capability.owl b/ontology/sio/release/sio-subset-capability.owl index f91b2c96..b215725a 100644 --- a/ontology/sio/release/sio-subset-capability.owl +++ b/ontology/sio/release/sio-subset-capability.owl @@ -1,18 +1,18 @@ disposition - core - A disposition is the tendency of a capability to be exhibited under certain conditions or in response to a certain stimulus (trigger). - solubility (to dissolve when put in fluid); fragility (disposition to break when dropped) - + A disposition is the tendency of a capability to be exhibited under certain conditions or in response to a certain stimulus (trigger). + core + solubility (to dissolve when put in fluid); fragility (disposition to break when dropped) + @@ -20,26 +20,26 @@ function - A function is a capability that satisfies some agentive objective, or (evolutionary) optimization. - core - + A function is a capability that satisfies some agentive objective, or (evolutionary) optimization. + core + capability - capability+ - core - A capability is a realizable entity whose basis lies in one or more parts or qualities and reflects possility of an entity to act in a specified way under certain conditions or in response to a certain stimulus (trigger). - + A capability is a realizable entity whose basis lies in one or more parts or qualities and reflects possility of an entity to act in a specified way under certain conditions or in response to a certain stimulus (trigger). + core + capability+ + to modify - to modify is the capability to change some entity. - + to modify is the capability to change some entity. + @@ -47,24 +47,24 @@ to record http://purl.obolibrary.org/obo/OBI_0000368 - to record is the capability to detect and transcribe information in a specified format on some physical medium. - + to record is the capability to detect and transcribe information in a specified format on some physical medium. + to magnify - to magnify is the capability to increase the appearance of the size of an object. - + to magnify is the capability to increase the appearance of the size of an object. + to heat - to heat is a capability to increase the internal kinetic energy of a material. - + to heat is a capability to increase the internal kinetic energy of a material. + @@ -72,8 +72,8 @@ to cool http://purl.obolibrary.org/obo/OBI_0000387 - to cool is the capability to decrease the internal kinetic energy of a material. - + to cool is the capability to decrease the internal kinetic energy of a material. + @@ -81,313 +81,313 @@ to freeze http://purl.obolibrary.org/obo/OBI_0000375 - to freeze is the capability to decrease the internal kinetic energy of a material such that it changes state from a gas or liquid to a solid. - + to freeze is the capability to decrease the internal kinetic energy of a material such that it changes state from a gas or liquid to a solid. + to separate - to separate is the capability to i) distinguish some entities based on some attribute(s) and ii) subsequently physically displace them. - + to separate is the capability to i) distinguish some entities based on some attribute(s) and ii) subsequently physically displace them. + to ionize - to ionize is the capability to physically convert an atom or molecule into an ion by adding or removing charged particles such as electrons or other ions. - + to ionize is the capability to physically convert an atom or molecule into an ion by adding or removing charged particles such as electrons or other ions. + to supply energy - to supply energy is the capability to transfer energy from a source to a sink. - + to supply energy is the capability to transfer energy from a source to a sink. + to observe - to observe is the capability to watch attentively. - + to observe is the capability to watch attentively. + dysfunction - dysfunction is a capability to act in a manner that is abnormal or opposite to the object's typical function. - + dysfunction is a capability to act in a manner that is abnormal or opposite to the object's typical function. + to measure - to measure is the capability to obtain information about some entity by examining its attributes in relation to some reference metric. - + to measure is the capability to obtain information about some entity by examining its attributes in relation to some reference metric. + to inject - to inject is the capability to administer a substance into some object through its external barrier. - + to inject is the capability to administer a substance into some object through its external barrier. + to boil - to boil is the capability to increase the internal kinetic energy of a material such that it changes state from a solid or liquid to a gas. - + to boil is the capability to increase the internal kinetic energy of a material such that it changes state from a solid or liquid to a gas. + to reduce energy - to reduce energy is the capability to remove energy from a source. - + to reduce energy is the capability to remove energy from a source. + to supply electricity - to supply electricity is the capability to transfer electricity from a source to a sink. - + to supply electricity is the capability to transfer electricity from a source to a sink. + to change materially - to change appearance is the capability to change the material composition of an object. - + to change appearance is the capability to change the material composition of an object. + to demagnify - to demagnify is the capability to decrease the appearance of the size of an object. - + to demagnify is the capability to decrease the appearance of the size of an object. + to change appearance - to change appearance is the capability to change the visual attributes of an object. - + to change appearance is the capability to change the visual attributes of an object. + to contain - to contain is the capability to bound or constrain a physical entity in some site. - + to contain is the capability to bound or constrain a physical entity in some site. + to immobilize - to immobilize is the capability to contain an entity in such a way that it may not move in space. - + to immobilize is the capability to contain an entity in such a way that it may not move in space. + to filter - to filter is the capability to retain certain entities based on selected attribute(s) while allowing other entities to pass through. - + to filter is the capability to retain certain entities based on selected attribute(s) while allowing other entities to pass through. + to excite - to excite is the capability to supply energy to a materila by bombarding it with energetic particles (e.g., photons). - + to excite is the capability to supply energy to a materila by bombarding it with energetic particles (e.g., photons). + to emit - to emit is the capability to release some physical entity (light, pollution, etc). - + to emit is the capability to release some physical entity (light, pollution, etc). + to change energetically - to change energetically is the capability to change the energetic aspects of an object. - + to change energetically is the capability to change the energetic aspects of an object. + to positively charge - to positively charge is the capability to remove an electron or add a positively charged ion to a chemical entity. - + to positively charge is the capability to remove an electron or add a positively charged ion to a chemical entity. + to negatively charge - to negatively charge is the capability to add an electron or negatively charged ion to a chemical entity. - + to negatively charge is the capability to add an electron or negatively charged ion to a chemical entity. + to assemble - to assemble is the capability to combine entities together into a larger object that persists in time. - + to assemble is the capability to combine entities together into a larger object that persists in time. + to extract - to extract is the capability to remove certain entities based on selected attribute(s) while allowing other entities to remain. - + to extract is the capability to remove certain entities based on selected attribute(s) while allowing other entities to remain. + to transport - to transport is the capability to displace a material from one location to another. - + to transport is the capability to displace a material from one location to another. + to change spatially - to change spatially is the capability to affect the physical movement of some entity. - + to change spatially is the capability to affect the physical movement of some entity. + to regulate - to modulate - to regulate is to control or maintain the rate or speed of an object or process. - + to modulate + to regulate is to control or maintain the rate or speed of an object or process. + to provide - to provide is the capability to make available some object to another that requires it. - + to provide is the capability to make available some object to another that requires it. + to increase the rate of formation - to increase the rate of formation is to regulate the rate of formation in a manner that increases this rate relative to a reference process. - + to increase the rate of formation is to regulate the rate of formation in a manner that increases this rate relative to a reference process. + to investigate - to investigate is the capability to uncover facts. - + to investigate is the capability to uncover facts. + mutual disposition - A mutual disposition is a disposition that simulataneously invokes another disposition when realized. - + A mutual disposition is a disposition that simulataneously invokes another disposition when realized. + to consume - to consume is the capability to internalize a material entity. - + to consume is the capability to internalize a material entity. + to actively interact with - to actively interact with is the capability to interact with another entity in a way that requires physical contact. - + to actively interact with is the capability to interact with another entity in a way that requires physical contact. + to decrease the rate of formation - to decrease the rate of formation is to regulate the rate of formation in a manner that decreases this rate relative to a reference process. - + to decrease the rate of formation is to regulate the rate of formation in a manner that decreases this rate relative to a reference process. + to regulate the rate of formation - to regulate the rate of formation is to modify the rate at which an object is formed. - + to regulate the rate of formation is to modify the rate at which an object is formed. + to serve as - to serve as is the capability to act in a manner corresponding to some role. - + to serve as is the capability to act in a manner corresponding to some role. + to serve as a host - to serve as host is the capability to act in a manner that provides hospitality, serves to harbour an organism in or on itself. - + to serve as host is the capability to act in a manner that provides hospitality, serves to harbour an organism in or on itself. + to infect - to infect is the capability to administer a disease-causing organism into some object. - + to infect is the capability to administer a disease-causing organism into some object. + to cause disease - to cause disease is the capability to materially change a biological object in that it functions abnormally. - + to cause disease is the capability to materially change a biological object in that it functions abnormally. + @@ -395,50 +395,50 @@ to reduce the activation energy - to activate - to reduce the activation energy is to require a smaller amount of energy in order to form or break a chemical bond. - + to activate + to reduce the activation energy is to require a smaller amount of energy in order to form or break a chemical bond. + to increase the activation energy - to inhibit - to increase the activation energy is to require a larger amount of energy in order to form or break a chemical bond. - + to increase the activation energy is to require a larger amount of energy in order to form or break a chemical bond. + to inhibit + to change the activation energy - to change the activation energy is to change the amount of energy required to form or break a chemical bond. - + to change the activation energy is to change the amount of energy required to form or break a chemical bond. + to passively interact with - to passively interact with is the capability to interact with another entity in a way that does not require physical contact. - + to passively interact with is the capability to interact with another entity in a way that does not require physical contact. + to be a part of - to be a part of is the capability to be assembled into a larger structure that persists in time. - + to be a part of is the capability to be assembled into a larger structure that persists in time. + to associate - to associate is the capability to physically interact with another object. - + to associate is the capability to physically interact with another object. + @@ -446,64 +446,64 @@ to be actively interacted with - to be actively interacted with is the capability to be manipulated by some device or agent. - + to be actively interacted with is the capability to be manipulated by some device or agent. + to be passively interacted with - to be passively interacted with is the capability of an object to be observed. - + to be passively interacted with is the capability of an object to be observed. + to be recorded - to be recorded is the capability of an object to be observed in such a way that information about it can be transcribed in a specified format on some physical medium. - + to be recorded is the capability of an object to be observed in such a way that information about it can be transcribed in a specified format on some physical medium. + to be observed - to be observed is the capability of an object to be perceived. - + to be observed is the capability of an object to be perceived. + to disassemble - to disassemble is to physically separate the parts of an object. - + to disassemble is to physically separate the parts of an object. + to disassociate - to disassociate is to cease or break association with some thing. - + to disassociate is to cease or break association with some thing. + to interact with - to interact with is a capabililty that involves another object. - + to interact with is a capabililty that involves another object. + to be interacted with - to be interacted with is the capability of an object to be target of a physical interaction. - + to be interacted with is the capability of an object to be target of a physical interaction. + @@ -511,400 +511,400 @@ to translocate - to move - to translocate is the capability to displace oneself from one location to another. - + to move + to translocate is the capability to displace oneself from one location to another. + to be translocated - to be moved - to be translocated is the capability to be physically displaced from one location to another - + to be moved + to be translocated is the capability to be physically displaced from one location to another + to be compared - to be compared is the capability of an object to be examined in order to note the similarities or differences among a set of objects. - + to be compared is the capability of an object to be examined in order to note the similarities or differences among a set of objects. + to compare - to compare is the capability to examine in order to note the similarities or differences among a set of objects. - + to compare is the capability to examine in order to note the similarities or differences among a set of objects. + to examine - to examine is the capability to make detailed observation. - + to examine is the capability to make detailed observation. + to be examined - to be examined is the capability of an object to be observed in a detailed manner. - + to be examined is the capability of an object to be observed in a detailed manner. + to be a member of - to be a member of is the capability to be considered a part of a collection. - + to be a member of is the capability to be considered a part of a collection. + to distort - to distort is the capability to change the appearance of an entity by some transformation. - + to distort is the capability to change the appearance of an entity by some transformation. + to bind to - to bind to is the capability to physically interact with another object through a set of non-covalent interactions. - + to bind to is the capability to physically interact with another object through a set of non-covalent interactions. + to luminesce - to luminesce is to emit light through cold body radiation - + to luminesce is to emit light through cold body radiation + to fluoresce - to fluoresce is to emit light as a result of absorbing light or other electromagnetic radiation. - + to fluoresce is to emit light as a result of absorbing light or other electromagnetic radiation. + to remove a covalent bond - to remove a covalent bond is the capability to covalently modify a chemical entity by removing a covalent bond. - + to remove a covalent bond is the capability to covalently modify a chemical entity by removing a covalent bond. + to add a covalent bond - to add a covalent bond is the capability to covalently modify a chemical entity by adding a covalent bond. - + to add a covalent bond is the capability to covalently modify a chemical entity by adding a covalent bond. + to modify electronically - to modify electronically is the capability to change the electronic properties of an object. - + to modify electronically is the capability to change the electronic properties of an object. + to interact and to be interacted with - to interact and to be interacted with is a mutual disposition of interacting objects. - + to interact and to be interacted with is a mutual disposition of interacting objects. + to gain a covalent bond - to gain a covalent bond is the capability of a chemical entity to have bonds added. - + to gain a covalent bond is the capability of a chemical entity to have bonds added. + to lose a covalent bond - to lose a covalent bond is the capability of a chemical entity to have bonds removed. - + to lose a covalent bond is the capability of a chemical entity to have bonds removed. + to ingest - to ingest is the capability to take into the body by the mouth for digestion or absorption. - + to ingest is the capability to take into the body by the mouth for digestion or absorption. + to produce - to produce is the capability to create new objects - + to produce is the capability to create new objects + to test a hypothesis - to test a hypothesis is the capability to evaluate the truth value of a proposition based on gathered evidence. - + to test a hypothesis is the capability to evaluate the truth value of a proposition based on gathered evidence. + to characterize - to characterize is the capability to classify the attributes or features of an entity against a reference classification. - + to characterize is the capability to classify the attributes or features of an entity against a reference classification. + to describe - to describe is the capabilty to communicate facts about an entity. - + to describe is the capabilty to communicate facts about an entity. + to identify - to identify is the capability to determine the identity of something. - + to identify is the capability to determine the identity of something. + to serve as a template for molecular synthesis - to serve as a template for molecular synthesis is the capability of a chemical entity to provide the necessary information or scaffold by which another molecule may be produced. - + to serve as a template for molecular synthesis is the capability of a chemical entity to provide the necessary information or scaffold by which another molecule may be produced. + to serve as a template for protein synthesis - to serve as a template for protein synthesis is the capability of a chemical entity to provide the necessary information or scaffold by which a protein may be produced. - + to serve as a template for protein synthesis is the capability of a chemical entity to provide the necessary information or scaffold by which a protein may be produced. + to serve as a template for RNA synthesis - to serve as a template for RNA synthesis is the capability of a chemical entity to provide the necessary information or scaffold by which an RNA molecule may be produced. - + to serve as a template for RNA synthesis is the capability of a chemical entity to provide the necessary information or scaffold by which an RNA molecule may be produced. + to serve as a template for DNA synthesis - to serve as a template for DNA synthesis is the capability of a chemical entity to provide the necessary information or scaffold by which a DNA molecule may be produced. - + to serve as a template for DNA synthesis is the capability of a chemical entity to provide the necessary information or scaffold by which a DNA molecule may be produced. + to serve as a primer for DNA synthesis - to serve as a primer for DNA synthesis is the capability of a short nucleic acid to bind to the 5' end of single strand of DNA template and help initiate DNA replication. - + to serve as a primer for DNA synthesis is the capability of a short nucleic acid to bind to the 5' end of single strand of DNA template and help initiate DNA replication. + to covalently modify - to covalently modify is to materially change a molecule by adding or removing covalent bonds between atoms. - + to covalently modify is to materially change a molecule by adding or removing covalent bonds between atoms. + to modify conformation of - to modify conformation of is to affect the spatial arrangement of an entity. - + to modify conformation of is to affect the spatial arrangement of an entity. + to cleave - to cleave is to split or sever an object along a natural line or grain. - + to cleave is to split or sever an object along a natural line or grain. + to combine - to combine is the capability to modify a set of objects in a way that the object is merged with another object to form a new object or substance. - + to combine is the capability to modify a set of objects in a way that the object is merged with another object to form a new object or substance. + to breathe - to breathe is the capability to inhale and exhale air into the body during respiration. - + to breathe is the capability to inhale and exhale air into the body during respiration. + to conformationally activate - to conformationally activate is to modify the conformation of an entity in such a way that it becomes activated or functional. - + to conformationally activate is to modify the conformation of an entity in such a way that it becomes activated or functional. + to conformationally inhibit - to conformationally inhibit is to modify the conformation of an entity in such a way that it functionally is reduced or inhibited. - + to conformationally inhibit is to modify the conformation of an entity in such a way that it functionally is reduced or inhibited. + to oxidize - to oxidize is the capability to remove an electron or an increase in oxidation state of a chemical entity. - + to oxidize is the capability to remove an electron or an increase in oxidation state of a chemical entity. + to reduce - to reduce is the capability to add an electron or an decrease in oxidation state of a chemical entity. - + to reduce is the capability to add an electron or an decrease in oxidation state of a chemical entity. + to modify oxidation state of - to modify the oxidation state of is to change the number of electrons of a molecule, atom or ion. - + to modify the oxidation state of is to change the number of electrons of a molecule, atom or ion. + to be modified - to be modified is the capability to be actively interacted with in such a way that it leads to a physical reconfiguration. - + to be modified is the capability to be actively interacted with in such a way that it leads to a physical reconfiguration. + to be cleaved - to be cleaved is the capability to be modified in a way that splits one part of the object from the other. - + to be cleaved is the capability to be modified in a way that splits one part of the object from the other. + to be covalently modified - to be covalently modified is the capability of a chemical entity to have bonds added or removed - + to be covalently modified is the capability of a chemical entity to have bonds added or removed + to be combined - to be combined is the capability to be modified in a way that the object is merged with another object to form a new object or substance. - + to be combined is the capability to be modified in a way that the object is merged with another object to form a new object or substance. + to be transported - to be transported is the disposition to undergo motion. - + to be transported is the disposition to undergo motion. + to be electronically modified - to be electronically modified is the capability of a chemical entity to have electrons added or removed. - + to be electronically modified is the capability of a chemical entity to have electrons added or removed. + to gain an electron - to gain an electron is the capability of a chemical entity to receive an electron. - + to gain an electron is the capability of a chemical entity to receive an electron. + to lose an electron - to lose an electron is the capability of a chemical entity to lose an electron. - + to lose an electron is the capability of a chemical entity to lose an electron. + to be activated - to be activated is the capability to be modified in such a way that the conformational change leads to an increase in another capability. - + to be activated is the capability to be modified in such a way that the conformational change leads to an increase in another capability. + to be inhibited - to be inhibited is the capability to be modified in such a way that the conformational change leads to an decrease in another capability. - + to be inhibited is the capability to be modified in such a way that the conformational change leads to an decrease in another capability. + to be conformationally changed - to be conformationally changed is the capability to be modified in such a way that the object's conformation is changed. - + to be conformationally changed is the capability to be modified in such a way that the object's conformation is changed. + - sio-v1.0.16-capability-subset.owl - - + sio-v1.17.0-capability-subset.owl + + \ No newline at end of file diff --git a/ontology/sio/release/sio-subset-chemical.owl b/ontology/sio/release/sio-subset-chemical.owl index 8b59b797..0d38da63 100644 --- a/ontology/sio/release/sio-subset-chemical.owl +++ b/ontology/sio/release/sio-subset-chemical.owl @@ -10,7 +10,7 @@ biopolymer A biopolymer is an organic polymer using biological components. - + @@ -18,7 +18,7 @@ monomer A monomer is a submolecule that is proper part of some polymer, and is a building block for such polymer. - + @@ -26,7 +26,7 @@ polymer A polymer is a molecule composed of a connected set of monomeric residues. - + @@ -34,7 +34,7 @@ lipid residue A lipid residue is a part of an organic molecule that was derived from a lipid molecule. - + @@ -42,7 +42,7 @@ data storage device A data storage device is a device that is capable of storing information. - + @@ -50,7 +50,7 @@ solid state hard drive A solid-state drive (SSD) is a data storage device that uses solid-state memory to store persistent data. - + @@ -58,7 +58,7 @@ hard disk drive A hard disk drive (HDD) is a non-volatile, random access device for digital data. It features rotating rigid platters on a motor-driven spindle within a protective enclosure. Data is magnetically read and written on the platter by read/write heads that float on a film of air above the platters. - + @@ -66,7 +66,7 @@ sound wave A sound wave is a mechanical wave that is an oscillation of pressure transmitted through a solid, liquid, or gas, composed of frequencies within the range of hearing. - + @@ -74,7 +74,7 @@ chemical functional group A chemical functional group is a covalently connected part of a molecule which normally confer specific chemical properties. - + @@ -82,7 +82,7 @@ wave A wave is a physical entity that travels through space and time, consist of oscillations or vibrations and may be accompanied by the transfer of energy. - + @@ -90,7 +90,7 @@ primer A primer is a nucleic acid that enables the synthesis of a complement strand of DNA by binding to it and acting as a point of transcription initiation. - + @@ -100,7 +100,7 @@ http://purl.obolibrary.org/obo/SO_0001263 A non-protein coding RNA (ncRNA) gene is a gene that encodes for a RNA transcript that is not further translated into a protein product. ncRNA gene - + @@ -108,7 +108,7 @@ chromosome A chromosome is a molecular complex of circular or linear DNA and bound proteins. - + @@ -116,7 +116,7 @@ radio receiver A radio receiver is a communication device that receives its input from an antenna, uses electronic filters to separate a wanted radio signal from all other signals picked up by this antenna, amplifies it to a level suitable for further processing, and finally converts through demodulation and decoding the signal into a form usable for the consumer, such as sound, pictures, digital data, measurement values, navigational positions. - + @@ -124,7 +124,7 @@ telephone The telephone is a communications device that transmits and receives sounds, and are minimally composed of a microphone to speak into, a speaker'which reproduces the voice of the other person and a ringer which makes a sound to alert the owner when a call is coming in. - + @@ -132,7 +132,7 @@ radar A radar is an object-detection system which uses radio waves to determine the range, altitude, direction, or speed of objects. - + @@ -140,7 +140,7 @@ device A device is usually a constructed tool. - + @@ -148,7 +148,7 @@ communication device A communication device is a device that facilitates the transmission of information through encoded in an audio or digital signal between a sender and a receiver. - + @@ -157,7 +157,7 @@ http://purl.obolibrary.org/obo/SO_0001217 A gene that contains an open reading frame which codes for a protein. - + @@ -165,7 +165,7 @@ functional rna coding gene A gene that codes for a functional RNA molecule. - + @@ -173,7 +173,7 @@ predicted gene A predicted gene is a gene that was identified through computational method but has not been experimentally validated. - + @@ -182,7 +182,7 @@ http://purl.obolibrary.org/obo/SO_0000336 A pseudo gene is a region of a nucleic acid that either cannot be transcribed, or its RNA transcript cannot be translated. - + @@ -190,7 +190,7 @@ validated gene An experimentally validated gene is a gene whose existence has been demonstrated through experimental methods. - + @@ -198,7 +198,7 @@ sample A sample is a limited quantity of something (e.g. an individual or set of individuals from a population, or a portion of a substance) to be used for testing, analysis, inspection, investigation, demonstration, or trial use. - + @@ -206,7 +206,7 @@ liquid solution A liquid solution is a heterogeneous substance in a liquid state. - + @@ -214,7 +214,7 @@ double stranded DNA double stranded nucleic acid is a molecular complex composed of two weakly connected deoxyribonucleic acids. - + @@ -222,7 +222,7 @@ nucleic acid strand A nucleic acid strand is a single-stranded nucleic acid that is part of a double stranded nucleic acid complex. - + @@ -231,7 +231,7 @@ The positive nucleic acid strand refers to the strand that is to be read 5' to 3'. forward strand - + @@ -240,7 +240,7 @@ The negative nucleic acid strand is the strand that is that is complimentary to the forward strand and appears from 3' to 5'. reverse strand - + @@ -248,7 +248,7 @@ double stranded nucleic acid double stranded nucleic acid is a molecular complex composed of two weakly connected nucleic acids. - + @@ -256,7 +256,7 @@ double stranded RNA double stranded nucleic acid is a molecular complex composed of two weakly connected ribonucleic acids. - + @@ -264,9 +264,9 @@ ribosomal RNA gene http://purl.obolibrary.org/obo/SO_0001637 - rRNA gene A ribosomal RNA gene is a gene that codes for a ribosomal RNA molecule. - + rRNA gene + @@ -274,7 +274,7 @@ 5' splice site The 5' splice site is the terminal region of an exon that is 5' to the intron that is to be excised. - + @@ -282,7 +282,7 @@ 3' splice site The 3' splice site is the terminal region of an exon that is 3' to the intron that is to be excised. - + @@ -290,7 +290,7 @@ amino acid An amino acid is an organic molecule composed of a carbon bonded to four different groups: a carboxyl group, an amino group, an R group, and a hydrogen atom. In the case of glycine, the R group is another hydrogen atom. - + @@ -298,7 +298,7 @@ cis regulatory element A cisregulatory element is a DNA sequence located on the same DNA strand or chromosome as the gene whose expression it affects. - + @@ -306,7 +306,7 @@ trans-regulatory element A trans-regulatory element is a DNA sequence associated with the regulation of a gene located outside the genomic region supporting the corresponding structural DNA region of the trans-regulatory element (i.e., a different DNA strand or different chromosome). - + @@ -315,7 +315,7 @@ http://purl.obolibrary.org/obo/SO_0001266 A small cytoplasmic RNA (scRNA) gene is a gene that encodes a small (7S; 129 nucleotides) RNA molecule found in the cytosol and rough endoplasmic reticulum that are normally associated with proteins that are involved in specific selection and transport of other proteins. - + @@ -324,7 +324,7 @@ http://purl.obolibrary.org/obo/SO_0001268 A small nuclear RNA (snRNA) gene is a gene that encodes a small niuclear RNA molecule. - + @@ -333,7 +333,7 @@ http://purl.obolibrary.org/obo/SO_0001267 A small nucleolar RNA (snoRNA) gene is a gene that encodes a small RNA that are associated with the eukaryotic nucleus as components of small nucleolar ribonucleoproteins. - + @@ -344,7 +344,7 @@ A transfer RNA (tRNA) gene is a gene that codes for a tRNA used in the translation of a messenger RNA (mRNA) to produce a protein product. solube RNA (sRNA) gene tRNA gene - + @@ -353,7 +353,7 @@ A small cytoplasmic RNA (scRNA) molecule is a small (7S; 129 nucleotides) RNA molecule found in the cytosol and rough endoplasmic reticulum that are normally associated with proteins that are involved in specific selection and transport of other proteins. scRNA - + @@ -362,7 +362,7 @@ A transfer RNA (tRNA) is an RNA molecule that aids in the translation of a messenger RNA (mRNA) to produce a protein product. tRNA - + @@ -371,7 +371,7 @@ A small nuclear RNA (snRNA) is a small RNA molecule that is located in the nucleus of a cell. snRNA - + @@ -380,7 +380,7 @@ A small nucleolar RNA (snoRNA) is a small RNA that are associated with the eukaryotic nucleus as components of small nucleolar ribonucleoproteins. snoRNA - + @@ -388,7 +388,7 @@ non-protein coding RNA (ncRNA) A non-protein coding RNA (ncRNA) is a RNA molecular that cannot be used as a template for generating a protein product. - + @@ -396,7 +396,7 @@ data collection device A data collection device is a device that collects information about one or more objects. - + @@ -405,7 +405,7 @@ http://purl.obolibrary.org/obo/OBI_0000049 A mass spectrometer is a device that identifies ions based on their mass to charge ratio using an electromagnetic field. - + @@ -415,7 +415,7 @@ http://purl.obolibrary.org/obo/OBI_0000052 A microarray device is a device that identifies the binding of a target substance to a physically immobile substrate placed in an array or lattice. microarray platform - + @@ -425,17 +425,26 @@ http://purl.obolibrary.org/obo/OBI_0000566 A nuclear magnetic resonance (NMR) device is a device that applies a magnetic field to perturb nuclei with an odd number of protons and/or of neutrons in order to hav them absort and re-emit electromagnetic radiation. nuclear magnetic resonance device - + + + + + + single nucleotide variation + + SNV + a single nucleotide variation (SNV) is a nucleotide residue that is a variant compared to some reference nucleic acid sequence. + chemical entity CHEBI:23367 - chemical+ A chemical entity is a material entity that pertains to chemistry. atom, ion, molecule, chemical substance, - + chemical+ + @@ -444,7 +453,7 @@ A weak submolecular component is a submolecular component that weakly connects submolecular components. - + @@ -452,7 +461,7 @@ polypeptide A polypeptide is an organic polymer composed of amino acid residues. - + @@ -460,7 +469,7 @@ nucleic acid A nucleic acid is an organic polymer composed of a sequence of nucleotide residues. - + @@ -469,7 +478,7 @@ A ribonucleic acid is an organic polymer composed of a sequence of ribonucleotide residues. - + @@ -477,7 +486,7 @@ deoxyribonucleic acid A deoxyribonucleic acid is an organic polymer composed of a sequence of deoxyribonucleotide residues. - + @@ -485,7 +494,7 @@ lipid A lipid is a water-insoluable organic molecule. - + @@ -493,7 +502,7 @@ submolecular entity A submolecular entity is a part of a molecular entity. - + @@ -501,7 +510,7 @@ oligosaccharide An oligosaccharide is an organic polymer composed of monosaccharides joined by glycosidic bonds. - + @@ -509,7 +518,7 @@ genetic polymorphism genetic polymorphism is the description of a difference in genetic composition at some location. - + @@ -518,7 +527,7 @@ single nucleotide polymorphism single nucleotide polymorphism (SNP) is a variation in a single base in the genetic composition between different individuals of the same species. - + @@ -526,7 +535,7 @@ monosaccharide A monosaccharide is an organic polymer that consists of a single polyhydroxy aldehyde or ketone group. - + @@ -534,7 +543,7 @@ hydrogen bond A hydrogen bond is a weak submolecular interaction formed between a hydrogen atom and a electronegative atom. - + @@ -542,7 +551,7 @@ cation pi interaction A cation pi interaction is an ionic interaction between the localized negative charge of π orbital electrons, located above and below the plane of an aromatic ring, and a positive charge. - + @@ -552,7 +561,7 @@ http://purl.obolibrary.org/obo/SO_0000704 biopax:Gene A gene is part of a nucleic acid that contains all the necessary elements to encode a functional transcript. - + @@ -560,7 +569,7 @@ chemical element A chemical element is a (effectively) homogeneous substance composed of one type of atom. - + @@ -568,7 +577,7 @@ drug A drug is a chemical entity that regulates a biological process. - + @@ -577,7 +586,7 @@ drug A pharmaceutical preparation is a chemical substance approved for use in the medical diagnosis, cure, treatment, or prevention of disease. - + @@ -585,7 +594,7 @@ haplotype A haplotype is one of a set of genomic sequence variants. - + @@ -594,7 +603,7 @@ A protein is an organic polymer that is composed of one or more linear polymers of amino acids. CHEBI:36080 - + @@ -602,7 +611,7 @@ atom An atom is composed of a core of protons and/or neutrons which may be surrounded by a cloud of electrons. - + @@ -610,7 +619,7 @@ base pair A base pair is a weak molecular interaction composed of hydrogen bonds between nucleobases. - + @@ -618,7 +627,7 @@ strong submolecular component A strong submolecular component is a submolecular component that strongly connects submolecular components. - + @@ -626,7 +635,7 @@ 5' untranslated region The five prime untranslated region (5' UTR) is a section of messenger RNA (mRNA) and the DNA that codes for it that starts at the +1 position (where transcription begins) and ends one nucleotide before the start codon (usually AUG) of the coding region. - + @@ -634,7 +643,7 @@ 3' untranslated region A three prime untranslated region (3'-UTR) is the section of messenger RNA (mRNA) that immediately follows the translation termination codon. - + @@ -642,7 +651,7 @@ organic submolecule An organic submolecule is connected region of a molecule. - + @@ -650,7 +659,7 @@ organic molecule An organic molecular entity is a chemical entity composed of organic atoms (at least carbon, hydrogen, and optionally oxygen, phosphorus, nitrogen) - + @@ -658,7 +667,7 @@ open reading frame An open reading frame (ORF) is a part of a gene that encodes a protein but does not contain a stop codon. - + @@ -666,7 +675,7 @@ amino acid residue An amino acid residue is a part of a molecule that is derived from an amino acid molecule. - + @@ -674,7 +683,7 @@ nucleotide residue A nucleotide residue is a part of a molecule that derives from a nucleotide. - + @@ -682,7 +691,7 @@ poison A poison is a drug that is harzardous or toxic to an organism when ingested at a certain quantity. - + @@ -690,16 +699,16 @@ active ingredient An active ingredient is a molecular entity that exhibits biological activity. - + operon - An operon is a collection of contiguous genes transcribed as a single (polycistronic) mRNA. SO:0000178 - + An operon is a collection of contiguous genes transcribed as a single (polycistronic) mRNA. + @@ -707,7 +716,7 @@ gene regulatory component A gene regulatory component is a gene component that exerts a regulatory function. - + @@ -715,7 +724,7 @@ gene enhancer A gene enhancer is a short region of DNA that can be bound with proteins to enhance transcription levels of genes in a gene cluster. - + @@ -723,7 +732,7 @@ inactive ingredient Aninactive ingredient is a molecular entity that does not exhibit biological activity. - + @@ -731,7 +740,7 @@ deoxyribonucleic acid template A deoxyribonucleic acid template is a deoxyribonucleic acid that provides the template to synthesize a complementary strand of DNA through transcription. - + @@ -740,7 +749,7 @@ A deoxyribonucleic acid primer is a deoxyribonucleic acid that enables the synthesis of a complement strand of DNA by binding to it and acting as a point of transcription initiation. - + @@ -748,7 +757,7 @@ RNA transcript component An RNA transcript component is a region of an RNA transcript. - + @@ -756,7 +765,7 @@ mature mRNA A mature RNA is a ribonucleic acid that contains an untranslated region (UTR) and protein coding sequence and lacks introns. - + @@ -764,7 +773,7 @@ pre-mRNA Precursor mRNA (pre-mRNA) is a single strand of messenger ribonucleic acid (mRNA) that is synthesized from a DNA template throught transcription. - + @@ -772,7 +781,7 @@ mRNA splice variant An mRNA splice variant is an mRNA molecule that varies from another mRNA molecule of the same gene origin but having a different final sequence due to differences in its assembly from splice sites. - + @@ -780,7 +789,7 @@ messenger RNA A messenger RNA is a ribonucleic acid that contains an untranslated region (UTR) and protein coding sequence and lacks introns. - + @@ -789,7 +798,7 @@ A gene that is located on DNA. - + @@ -797,7 +806,7 @@ rna gene A gene that is located on RNA. - + @@ -805,7 +814,7 @@ allele An allele is one of a set of sequence variants of a gene. - + @@ -813,7 +822,7 @@ carbohydrate residue A carbohydrate residue is a part of a molecule that was derived from a monosaccharide molecule. - + @@ -821,7 +830,7 @@ nucleic acid part A nucleic acid part is a component of a nucleic acid. - + @@ -830,7 +839,7 @@ A deoxyribonucleotide residue is a part of a molecule that derives from a deoxyribonucleotide. - + @@ -838,7 +847,7 @@ ribonucleotide residue A ribonucleotide residue is a part of a molecule that derives from a ribonucleotide. - + @@ -846,7 +855,7 @@ pharmaceutical component A pharmaceutical component is a part of a pharmaceutical preparation. - + @@ -854,7 +863,7 @@ covalently connected entity A covalently connected molecular entity is the mereological sum of a collection of covalently bonded atoms. - + @@ -862,7 +871,7 @@ chemical complex A chemical complex is a chemical entity composed of a weakly connected ions or molecules. - + @@ -870,7 +879,7 @@ enzyme An enzyme is a protein or protein complex that realizes its disposition to covalently modify some molecule during a chemical reaction. - + @@ -878,7 +887,7 @@ catalyst A catalyst is a molecule that has the capability to reduce the activation energy of a reaction and hence increase the overall rate of reaction. - + @@ -886,7 +895,7 @@ organic polymer An organic polymer is an organic molecule composed of connected set of monomeric units. - + @@ -894,7 +903,7 @@ reagent A reagent is a substance that is added to a system in order to bring about a chemical reaction, or added to see if a reaction occurs. - + @@ -902,7 +911,7 @@ specimen A specimen is a portion of material for use in testing, examination, or study. - + @@ -910,7 +919,7 @@ buffer A buffer is a dissolved chemical substance that resists change in pH upon addition of small amounts of acid or base. - + @@ -918,7 +927,7 @@ solvent A solvent is a substance that can dissolve other substances (solutes). - + @@ -926,7 +935,7 @@ solute A solute is a substance that becomes dissolved in a solvent. - + @@ -934,7 +943,7 @@ antigen An antigen is a chemical entity that can be bound by a major histocompatibility complex (MHC) and presented to a T-cell receptor. - + @@ -942,7 +951,7 @@ receptor A receptor molecule is a molecule that has the capability to bind to a signal and propogate a response to that signal. - + @@ -951,7 +960,7 @@ A centrifugation pellet is a solid substance that forms as a result of compaction by a centrifuge. - + @@ -959,7 +968,7 @@ supernatant A supernatent is a liquid substance that remains after centrifugation. - + @@ -967,7 +976,7 @@ centrifugation substance A centrifugation substance is a substance that is the target or product of centrifugation. - + @@ -975,7 +984,7 @@ liquid solution component A liquid solution component is a part of a liquid solution. - + @@ -983,7 +992,7 @@ placebo A placebo is a medically ineffectual treatment for a medical condition intended to deceive the recipient. - + @@ -991,7 +1000,7 @@ low barrier hydrogen bond A low barrier hydrogen bond is a shorter, stronger hydrogen bond that is formed between both heteroatoms. - + @@ -999,7 +1008,7 @@ activator A molecular activator is a molecular regulator that realizes its disposition to conformationally change a target molecule and increase its functionality. - + @@ -1007,7 +1016,7 @@ inhibitor A molecular inhibitor is a molecular regulator that realizes its disposition to conformationally change a target molecule and decrease its functionality. - + @@ -1015,7 +1024,7 @@ molecular regulator A molecular regulator is a molecule that regulates the function of another chemical entity. - + @@ -1023,7 +1032,7 @@ signal transducer A signal transducer is a molecule that responds to and amplifies a signal in a signalling system. - + @@ -1031,7 +1040,7 @@ signal A signal is an object that initiates a sequence of events. - + @@ -1039,7 +1048,7 @@ messenger A mesenger is a molecule involved in either signal detection or signal propagation from receptors on the cell surface to target molecules inside the cell, in the cytoplasm or nucleus. - + @@ -1047,7 +1056,7 @@ second messenger A second messenger is a molecule that relay signals from receptors on the cell surface to target molecules inside the cell, in the cytoplasm or nucleus. - + @@ -1055,7 +1064,7 @@ submolecule A submolecule is a mereological sum of covalently bonded atoms. - + @@ -1063,7 +1072,7 @@ intron An intron is a region of a gene that is removed from the final protein open reading frame. - + @@ -1071,7 +1080,7 @@ gene component A gene component is a component of a gene. - + @@ -1079,7 +1088,7 @@ exon An exon is a nucleotide sequence encoded by a gene that remains present within the final mature RNA product of that gene after introns have been removed by RNA splicing. - + @@ -1087,7 +1096,7 @@ gene promoter A gene promoter is a region of DNA that initiates transcription of a particular gene. - + @@ -1096,7 +1105,7 @@ A start codon is the first codon of a messenger RNA (mRNA) transcript translated by a ribosome. The start codon is almost always preceded by an untranslated region 5' UTR. - + @@ -1104,7 +1113,7 @@ stop codon A stop codon (or termination codon) is a nucleotide triplet within messenger RNA that signals a termination of translation. - + @@ -1112,7 +1121,7 @@ RNA transcript An RNA transcript is an RNA molecule that is produced from transcription of a nucleic acid template. - + @@ -1120,7 +1129,7 @@ splice site A splice site is a region required for the excision of an intron and connection to another exon. - + @@ -1128,7 +1137,7 @@ acid An acid is a molecular entity in solution capable of donating a hydron (Bronsted acid) or capable of forming a covalent bond with an electron pair (Lewis acid). - + @@ -1136,7 +1145,7 @@ base A base is a molecular entity dissolved in a solvent that is capable of accepting a proton (Bronsted base) or forming a covalent bond with a hydron (Lewis base) . - + @@ -1144,7 +1153,7 @@ ion An ion is an atom or molecule in which the total number of electrons is not equal to the total number of protons, giving it a net positive or negative electrical charge. - + @@ -1153,7 +1162,7 @@ A polar solvent is a solvent that exhibits a polar quality. - + @@ -1161,7 +1170,7 @@ nonpolar solvent A non-polar solvent is a solvent that exhibits a non-polar quality. - + @@ -1170,7 +1179,7 @@ A heterogeneous substance is a chemical substance that is composed of more than one different kind of component. - + @@ -1178,7 +1187,7 @@ homogeneous substance A homogeneous substance is a substance that is composed of a uniform type of entity. - + @@ -1186,7 +1195,7 @@ antibody An antibody (also known as immunoglobulins, abbreviated Ig) are gamma globulin proteins that are used by the immune system to identify and neutralize foreign objects. They are typically made of two large heavy chains and two small light chains. - + @@ -1194,7 +1203,7 @@ alpha helix An alpha helix is structural region of a protein that is characterized by 3.6 residues per turn, a translation of 1.5 angstroms along the helical axis in which backbone N-H groups form a hydrogen bond to the backbone carboxyl group of the amino acid four residues prior. - + @@ -1203,7 +1212,7 @@ A beta strand is structural region of a protein that is characterized by a roughly planar sequence of amino acid residues forming hydrogen bonds between the N-O and the C=O of another part of the peptide and having their side chains perpendicular to the planar axis. - + @@ -1211,7 +1220,7 @@ and having their side chains perpendicular to the planar axis. protein part A protein part is any submolecule of a protein. - + @@ -1219,7 +1228,7 @@ and having their side chains perpendicular to the planar axis. ionic interaction An ionic interaction is a weak submolecular interaction between a charged submolecules. - + @@ -1227,7 +1236,7 @@ and having their side chains perpendicular to the planar axis. protein complex A protein complex is a molecular complex composed of at least two polypeptide chains. - + @@ -1235,7 +1244,7 @@ and having their side chains perpendicular to the planar axis. single bond A single bond is a covalent bond between a pair of atoms in which one pair of electrons are shared. - + @@ -1243,7 +1252,7 @@ and having their side chains perpendicular to the planar axis. double bond A double bond is a covalent bond between a pair of atoms in which two pairs of electrons are shared. - + @@ -1251,7 +1260,7 @@ and having their side chains perpendicular to the planar axis. triple bond A triple bond is a covalent bond between a pair of atoms in which three pairs of electrons are shared. - + @@ -1259,7 +1268,7 @@ and having their side chains perpendicular to the planar axis. aromatic bond An aromatic bond is an interaction between a set of atoms across which pairs of electrons are shared. - + @@ -1267,7 +1276,7 @@ and having their side chains perpendicular to the planar axis. disulfide bond A disulfide bond is a bond between two sulfur atoms. - + @@ -1275,7 +1284,7 @@ and having their side chains perpendicular to the planar axis. dipole-dipole interaction A dipole-dipole interaction is a weak submolecular interaction between strongly electronegative atoms. - + @@ -1283,7 +1292,7 @@ and having their side chains perpendicular to the planar axis. van der Waals interaction van der Waals' interaction is an a weak submolecular interaction between an instantaneous dipole and induced dipole. - + @@ -1291,7 +1300,7 @@ and having their side chains perpendicular to the planar axis. base stack A base stack is a stabilizing interaction of DNA and RNA between spatially adjacent nucleotides and possibly involving London dispersion, hydrophobic and electrostatic forces. - + @@ -1299,7 +1308,7 @@ and having their side chains perpendicular to the planar axis. molecular complex A molecular complex is a chemical complex composed of weakly interacting molecular entities, and excludes bulk solvent. - + @@ -1307,7 +1316,7 @@ and having their side chains perpendicular to the planar axis. binary compound A binary compound is a mereological maximum sum of two kinds of weakly connected entities. - + @@ -1315,7 +1324,7 @@ and having their side chains perpendicular to the planar axis. ring A ring is a submolecule with a circular topology. - + @@ -1323,7 +1332,7 @@ and having their side chains perpendicular to the planar axis. aromatic ring An aromatic ring is a ring in which the electrons are delocalized across all atoms in the ring. - + @@ -1332,7 +1341,7 @@ and having their side chains perpendicular to the planar axis. A heterocyclic ring is a ring containing a hetero atom. - + @@ -1340,7 +1349,7 @@ and having their side chains perpendicular to the planar axis. homocyclic ring A homocyclic ring is a ring where the atoms are of a single type. - + @@ -1348,7 +1357,7 @@ and having their side chains perpendicular to the planar axis. ionic compound An ionic compound is a mereological maximal sum of weakly connected paired positive and negative ions. - + @@ -1356,7 +1365,7 @@ and having their side chains perpendicular to the planar axis. allotrope An allotrope is a structural variant of a chemical element. - + @@ -1364,7 +1373,7 @@ and having their side chains perpendicular to the planar axis. carbon allotrope A carbon allotrope is a chemical substance composed of carbon. - + @@ -1372,7 +1381,7 @@ and having their side chains perpendicular to the planar axis. diamond diamond is a carbon allotrope in which each carbon atom in diamond is covalently bonded to four other carbons in a tetrahedron. These tetrahedrons together form a 3-dimensional network of puckered six-membered rings of atoms. - + @@ -1380,7 +1389,7 @@ and having their side chains perpendicular to the planar axis. graphite graphite is an allotrope of carbon which is a conductor, and is the most stable form of solid carbon. - + @@ -1388,7 +1397,7 @@ and having their side chains perpendicular to the planar axis. fullerene fullerene is a carbon allotrope which take the form of a hollow sphere, ellipsoid, or tube. - + @@ -1396,7 +1405,7 @@ and having their side chains perpendicular to the planar axis. aggregated carbon nanorods aggregate of carbon nanorods is an allotrope of carbon considered to be the least compressible material known, as measured by its isothermal bulk modulus; aggregated diamond nanorods have a modulus of 491 gigapascals (GPa), while a conventional diamond has a modulus of 442 GPa. ADNRs are also 0.3% denser than regular diamond. - + @@ -1404,7 +1413,7 @@ and having their side chains perpendicular to the planar axis. amorphous carbon amorphous carbon is an allotrope of carbon that does not have any crystalline structure. As with all glassy materials, some short-range order can be observed, but there is no long-range pattern of atomic positions. - + @@ -1412,7 +1421,7 @@ and having their side chains perpendicular to the planar axis. carbon nanofoam carbon nanofoam is an allotrope of carbon that consists of a low-density cluster-assembly of carbon atoms strung together in a loose three-dimensional web. Each cluster is about 6 nanometers wide and consists of about 4000 carbon atoms linked in graphite-like sheets that are given negative curvature by the inclusion of heptagons among the regular hexagonal pattern. - + @@ -1420,7 +1429,7 @@ and having their side chains perpendicular to the planar axis. chaoite chaoite is an allotrope of carbon that is slightly harder than graphite with a reflection colour of grey to white. - + @@ -1428,7 +1437,7 @@ and having their side chains perpendicular to the planar axis. glassy carbon glassy carbon is an allotrope of carbon which is widely used as an electrode material in electrochemistry, as well as for high temperature crucibles and as a component of some prosthetic devices. - + @@ -1436,7 +1445,7 @@ and having their side chains perpendicular to the planar axis. ionsdaleite ionsdaleite is a hexagonal allotrope of the carbon allotrope diamond. - + @@ -1444,7 +1453,7 @@ and having their side chains perpendicular to the planar axis. boron atom CHEBI:27560 - + @@ -1452,7 +1461,7 @@ and having their side chains perpendicular to the planar axis. carbon atom CHEBI:27594 - + @@ -1460,7 +1469,7 @@ and having their side chains perpendicular to the planar axis. hydrogen atom CHEBI:49637 - + @@ -1468,7 +1477,7 @@ and having their side chains perpendicular to the planar axis. helium atom CHEBI:30217 - + @@ -1476,7 +1485,7 @@ and having their side chains perpendicular to the planar axis. lithium atom CHEBI:30145 - + @@ -1484,7 +1493,7 @@ and having their side chains perpendicular to the planar axis. beryllium atom CHEBI:30501 - + @@ -1492,7 +1501,7 @@ and having their side chains perpendicular to the planar axis. nitrogen atom CHEBI:25555 - + @@ -1500,7 +1509,7 @@ and having their side chains perpendicular to the planar axis. oxygen atom CHEBI:25805 - + @@ -1508,7 +1517,7 @@ and having their side chains perpendicular to the planar axis. fluorine atom CHEBI:24061 - + @@ -1516,7 +1525,7 @@ and having their side chains perpendicular to the planar axis. neon atom CHEBI:33310 - + @@ -1524,7 +1533,7 @@ and having their side chains perpendicular to the planar axis. sodium atom CHEBI:26708 - + @@ -1532,7 +1541,7 @@ and having their side chains perpendicular to the planar axis. magnesium atom CHEBI:25107 - + @@ -1540,7 +1549,7 @@ and having their side chains perpendicular to the planar axis. aluminium atom CHEBI:28984 - + @@ -1548,7 +1557,7 @@ and having their side chains perpendicular to the planar axis. silicon atom CHEBI:27573 - + @@ -1556,7 +1565,7 @@ and having their side chains perpendicular to the planar axis. phosphorus atom CHEBI:28659 - + @@ -1564,7 +1573,7 @@ and having their side chains perpendicular to the planar axis. sulfur atom CHEBI:26833 - + @@ -1572,7 +1581,7 @@ and having their side chains perpendicular to the planar axis. chlorine atom CHEBI:23116 - + @@ -1580,7 +1589,7 @@ and having their side chains perpendicular to the planar axis. argon atom CHEBI:49475 - + @@ -1588,7 +1597,7 @@ and having their side chains perpendicular to the planar axis. potassium atom CHEBI:26216 - + @@ -1596,7 +1605,7 @@ and having their side chains perpendicular to the planar axis. calcium atom CHEBI:22984 - + @@ -1604,7 +1613,7 @@ and having their side chains perpendicular to the planar axis. scandium atom CHEBI:33330 - + @@ -1612,7 +1621,7 @@ and having their side chains perpendicular to the planar axis. titanium atom CHEBI:33341 - + @@ -1620,7 +1629,7 @@ and having their side chains perpendicular to the planar axis. vanadium atom CHEBI:27698 - + @@ -1628,7 +1637,7 @@ and having their side chains perpendicular to the planar axis. chromium atom CHEBI:28073 - + @@ -1636,7 +1645,7 @@ and having their side chains perpendicular to the planar axis. manganese atom CHEBI:18291 - + @@ -1644,7 +1653,7 @@ and having their side chains perpendicular to the planar axis. iron atom CHEBI:18248 - + @@ -1652,7 +1661,7 @@ and having their side chains perpendicular to the planar axis. cobalt atom CHEBI:27638 - + @@ -1660,7 +1669,7 @@ and having their side chains perpendicular to the planar axis. nickel atom CHEBI:28112 - + @@ -1668,7 +1677,7 @@ and having their side chains perpendicular to the planar axis. copper atom CHEBI:28694 - + @@ -1676,7 +1685,7 @@ and having their side chains perpendicular to the planar axis. zinc atom CHEBI:27363 - + @@ -1684,7 +1693,7 @@ and having their side chains perpendicular to the planar axis. gallium atom CHEBI:49631 - + @@ -1692,7 +1701,7 @@ and having their side chains perpendicular to the planar axis. germanium atom CHEBI:30441 - + @@ -1700,7 +1709,7 @@ and having their side chains perpendicular to the planar axis. arsenic atom CHEBI:27563 - + @@ -1708,7 +1717,7 @@ and having their side chains perpendicular to the planar axis. selenium atom CHEBI:27568 - + @@ -1716,7 +1725,7 @@ and having their side chains perpendicular to the planar axis. bromine atom CHEBI:22927 - + @@ -1724,7 +1733,7 @@ and having their side chains perpendicular to the planar axis. krypton atom CHEBI:49696 - + @@ -1732,7 +1741,7 @@ and having their side chains perpendicular to the planar axis. rubidium atom CHEBI:33322 - + @@ -1740,7 +1749,7 @@ and having their side chains perpendicular to the planar axis. strontium atom CHEBI:33324 - + @@ -1748,7 +1757,7 @@ and having their side chains perpendicular to the planar axis. yttrium atom CHEBI:33331 - + @@ -1756,7 +1765,7 @@ and having their side chains perpendicular to the planar axis. zirconium atom CHEBI:33342 - + @@ -1764,7 +1773,7 @@ and having their side chains perpendicular to the planar axis. niobium atom CHEBI:33344 - + @@ -1772,7 +1781,7 @@ and having their side chains perpendicular to the planar axis. molybdemum atom CHEBI:28685 - + @@ -1780,7 +1789,7 @@ and having their side chains perpendicular to the planar axis. technetium atom CHEBI:33353 - + @@ -1788,7 +1797,7 @@ and having their side chains perpendicular to the planar axis. ruthenium atom CHEBI:30682 - + @@ -1796,7 +1805,7 @@ and having their side chains perpendicular to the planar axis. rhodium atom CHEBI:33359 - + @@ -1804,7 +1813,7 @@ and having their side chains perpendicular to the planar axis. palladium atom CHEBI:33363 - + @@ -1812,7 +1821,7 @@ and having their side chains perpendicular to the planar axis. silver atom CHEBI:30512 - + @@ -1820,7 +1829,7 @@ and having their side chains perpendicular to the planar axis. cadmium atom CHEBI:22977 - + @@ -1828,7 +1837,7 @@ and having their side chains perpendicular to the planar axis. indium atom CHEBI:30430 - + @@ -1836,7 +1845,7 @@ and having their side chains perpendicular to the planar axis. tin atom CHEBI:27007 - + @@ -1844,7 +1853,7 @@ and having their side chains perpendicular to the planar axis. antimony atom CHEBI:30513 - + @@ -1852,7 +1861,7 @@ and having their side chains perpendicular to the planar axis. tellurium atom CHEBI:30452 - + @@ -1860,7 +1869,7 @@ and having their side chains perpendicular to the planar axis. iodine atom CHEBI:24859 - + @@ -1868,7 +1877,7 @@ and having their side chains perpendicular to the planar axis. xenon atom CHEBI:49957 - + @@ -1876,7 +1885,7 @@ and having their side chains perpendicular to the planar axis. caesium atom CHEBI:30514 - + @@ -1884,7 +1893,7 @@ and having their side chains perpendicular to the planar axis. barium atom CHEBI:32594 - + @@ -1892,7 +1901,7 @@ and having their side chains perpendicular to the planar axis. lanthanum atom CHEBI:33336 - + @@ -1900,7 +1909,7 @@ and having their side chains perpendicular to the planar axis. hafnium atom CHEBI:33343 - + @@ -1908,7 +1917,7 @@ and having their side chains perpendicular to the planar axis. tantalum atom CHEBI:33348 - + @@ -1916,7 +1925,7 @@ and having their side chains perpendicular to the planar axis. tungsten atom CHEBI:27998 - + @@ -1924,7 +1933,7 @@ and having their side chains perpendicular to the planar axis. rhenium atom CHEBI:49882 - + @@ -1932,7 +1941,7 @@ and having their side chains perpendicular to the planar axis. osmium atom CHEBI:30687 - + @@ -1940,7 +1949,7 @@ and having their side chains perpendicular to the planar axis. iridium atom CHEBI:49666 - + @@ -1948,7 +1957,7 @@ and having their side chains perpendicular to the planar axis. platinum atom CHEBI:33364 - + @@ -1956,7 +1965,7 @@ and having their side chains perpendicular to the planar axis. gold atom CHEBI:29287 - + @@ -1964,7 +1973,7 @@ and having their side chains perpendicular to the planar axis. mercury atom CHEBI:25195 - + @@ -1972,7 +1981,7 @@ and having their side chains perpendicular to the planar axis. thallium atom CHEBI:49920 - + @@ -1980,7 +1989,7 @@ and having their side chains perpendicular to the planar axis. lead atom CHEBI:25016 - + @@ -1988,7 +1997,7 @@ and having their side chains perpendicular to the planar axis. bismuth atom CHEBI:33301 - + @@ -1996,7 +2005,7 @@ and having their side chains perpendicular to the planar axis. polonium atom CHEBI:33313 - + @@ -2004,7 +2013,7 @@ and having their side chains perpendicular to the planar axis. astatine atom CHEBI:30415 - + @@ -2012,7 +2021,7 @@ and having their side chains perpendicular to the planar axis. radon atom CHEBI:33314 - + @@ -2020,7 +2029,7 @@ and having their side chains perpendicular to the planar axis. francium atom CHEBI:33323 - + @@ -2028,7 +2037,7 @@ and having their side chains perpendicular to the planar axis. radium atom CHEBI:33325 - + @@ -2036,7 +2045,7 @@ and having their side chains perpendicular to the planar axis. actinium atom CHEBI:33337 - + @@ -2044,7 +2053,7 @@ and having their side chains perpendicular to the planar axis. rutherfordium atom CHEBI:33346 - + @@ -2052,7 +2061,7 @@ and having their side chains perpendicular to the planar axis. dubnium atom CHEBI:33349 - + @@ -2060,7 +2069,7 @@ and having their side chains perpendicular to the planar axis. seaborgium atom CHEBI:33351 - + @@ -2068,7 +2077,7 @@ and having their side chains perpendicular to the planar axis. bohrium atom CHEBI:33355 - + @@ -2076,7 +2085,7 @@ and having their side chains perpendicular to the planar axis. hassium atom CHEBI:33357 - + @@ -2084,7 +2093,7 @@ and having their side chains perpendicular to the planar axis. meitnerium atom CHEBI:33361 - + @@ -2092,7 +2101,7 @@ and having their side chains perpendicular to the planar axis. darmstadtium atom CHEBI:33367 - + @@ -2100,7 +2109,7 @@ and having their side chains perpendicular to the planar axis. roentgenium atom CHEBI:33368 - + @@ -2108,49 +2117,49 @@ and having their side chains perpendicular to the planar axis. copernicium atom CHEBI:33517 - + unutrium atom - + ununquadium atom - + ununpentium atom - + ununhexium atom - + ununseptium atom - + ununoctium atom - + @@ -2158,7 +2167,7 @@ and having their side chains perpendicular to the planar axis. cerium atom CHEBI:33369 - + @@ -2166,7 +2175,7 @@ and having their side chains perpendicular to the planar axis. praseodymium atom CHEBI:49828 - + @@ -2174,7 +2183,7 @@ and having their side chains perpendicular to the planar axis. neodymium atom CHEBI:33372 - + @@ -2182,7 +2191,7 @@ and having their side chains perpendicular to the planar axis. promethium atom CHEBI:33373 - + @@ -2190,7 +2199,7 @@ and having their side chains perpendicular to the planar axis. samarium atom CHEBI:33374 - + @@ -2198,7 +2207,7 @@ and having their side chains perpendicular to the planar axis. europium atom CHEBI:32999 - + @@ -2206,7 +2215,7 @@ and having their side chains perpendicular to the planar axis. gadolinium atom CHEBI:33375 - + @@ -2214,7 +2223,7 @@ and having their side chains perpendicular to the planar axis. terbium atom CHEBI:33376 - + @@ -2222,7 +2231,7 @@ and having their side chains perpendicular to the planar axis. dysprosium atom CHEBI:33377 - + @@ -2230,7 +2239,7 @@ and having their side chains perpendicular to the planar axis. holmium atom CHEBI:49648 - + @@ -2238,7 +2247,7 @@ and having their side chains perpendicular to the planar axis. erbium atom CHEBI:33379 - + @@ -2246,7 +2255,7 @@ and having their side chains perpendicular to the planar axis. thulium atom CHEBI:33380 - + @@ -2254,7 +2263,7 @@ and having their side chains perpendicular to the planar axis. ytterbium atom CHEBI:33381 - + @@ -2262,7 +2271,7 @@ and having their side chains perpendicular to the planar axis. lutetium atom CHEBI:33382 - + @@ -2270,7 +2279,7 @@ and having their side chains perpendicular to the planar axis. thorium atom CHEBI:33385 - + @@ -2278,7 +2287,7 @@ and having their side chains perpendicular to the planar axis. protactinium atom CHEBI:33386 - + @@ -2286,7 +2295,7 @@ and having their side chains perpendicular to the planar axis. uranium atom CHEBI:27214 - + @@ -2294,7 +2303,7 @@ and having their side chains perpendicular to the planar axis. neptunium atom CHEBI:33387 - + @@ -2302,7 +2311,7 @@ and having their side chains perpendicular to the planar axis. plutonium atom CHEBI:33388 - + @@ -2310,7 +2319,7 @@ and having their side chains perpendicular to the planar axis. americium atom CHEBI:33389 - + @@ -2318,7 +2327,7 @@ and having their side chains perpendicular to the planar axis. curium atom CHEBI:33390 - + @@ -2326,7 +2335,7 @@ and having their side chains perpendicular to the planar axis. berkelium atom CHEBI:33391 - + @@ -2334,7 +2343,7 @@ and having their side chains perpendicular to the planar axis. californium atom CHEBI:33392 - + @@ -2342,7 +2351,7 @@ and having their side chains perpendicular to the planar axis. einsteinium atom CHEBI:33393 - + @@ -2350,7 +2359,7 @@ and having their side chains perpendicular to the planar axis. fermium atom CHEBI:33394 - + @@ -2358,7 +2367,7 @@ and having their side chains perpendicular to the planar axis. mendelevium atom CHEBI:33395 - + @@ -2366,7 +2375,7 @@ and having their side chains perpendicular to the planar axis. nobelium atom CHEBI:33396 - + @@ -2374,16 +2383,16 @@ and having their side chains perpendicular to the planar axis. lawrencium atom CHEBI:33397 - + covalent bond - A covalent bond is a strong submolecular interaction between atoms. CHEMINF:000063 - + A covalent bond is a strong submolecular interaction between atoms. + @@ -2392,7 +2401,7 @@ and having their side chains perpendicular to the planar axis. A molecule is the mereological maximal sum of a collection of covalently bonded atoms. CHEBI:23367 - + @@ -2401,13 +2410,13 @@ and having their side chains perpendicular to the planar axis. A chemical substance is a chemical complex of weakly interacting molecular entities, and may include bulk solvent. CHEMINF:440533 - + - sio-v1.0.16-chemical-subset.owl - - + sio-v1.17.0-chemical-subset.owl + + \ No newline at end of file diff --git a/ontology/sio/release/sio-subset-core.owl b/ontology/sio/release/sio-subset-core.owl index 6937bfbc..e0421e00 100644 --- a/ontology/sio/release/sio-subset-core.owl +++ b/ontology/sio/release/sio-subset-core.owl @@ -1,51 +1,51 @@ is related to - A is related to B iff there is some relation between A and B. - core - relations+ + relations+ + core 'is related to' is the top level relation in SIO - + A is related to B iff there is some relation between A and B. + has attribute - core - has attribute is a relation that associates a entity with an attribute where an attribute is an intrinsic characteristic such as a quality, capability, disposition, function, or is an externally derived attribute determined from some descriptor (e.g. a quantity, position, label/identifier) either directly or indirectly through generalization of entities of the same type. + core + has attribute is a relation that associates a entity with an attribute where an attribute is an intrinsic characteristic such as a quality, capability, disposition, function, or is an externally derived attribute determined from some descriptor (e.g. a quantity, position, label/identifier) either directly or indirectly through generalization of entities of the same type. - + has member - core - a collection of cars has as a car as a member - has member is a mereological relation between a collection and an item. + core + a collection of cars has as a car as a member + has member is a mereological relation between a collection and an item. - + is located in - A is located in B iff the spatial region occupied by A is part of the spatial region occupied by B. [T][R] - A parasite in the interior of a person's intestine is located in their intestinal lumen. - OBO_REL:located_in - core + A is located in B iff the spatial region occupied by A is part of the spatial region occupied by B. [T][R] + A parasite in the interior of a person's intestine is located in their intestinal lumen. + core + OBO_REL:located_in - + @@ -53,11 +53,11 @@ is part of - core - OBO_REL:part_of - is part of is a transitive, reflexive and anti-symmetric mereological relation between a whole and itself or a part and its whole. + OBO_REL:part_of + core + is part of is a transitive, reflexive and anti-symmetric mereological relation between a whole and itself or a part and its whole. - + @@ -65,44 +65,44 @@ is proper part of - OBO_REL:proper_part_of - core - is proper part of is an asymmetric, irreflexive (normally transitive) relation between a part and its distinct whole. + OBO_REL:proper_part_of + core + is proper part of is an asymmetric, irreflexive (normally transitive) relation between a part and its distinct whole. - + is contained in - core - OBO_REL:contained_in - A is contained in B iff the spatial region occupied by A is part of the spatial region occupied by B and A is not part of B. [T] + A is contained in B iff the spatial region occupied by A is part of the spatial region occupied by B and A is not part of B. [T] + OBO_REL:contained_in + core - + has participant - OBO_REL:has_participant - core - has participant is a relation that describes the participation of the object in the (processual) subject. + core + OBO_REL:has_participant + has participant is a relation that describes the participation of the object in the (processual) subject. - + has agent - OBO_REL:has_agent - core - sadi - has agent is a relation between a process and an entity, where the entity is present throughout the process and is a causal participant in the process. + core + sadi + OBO_REL:has_agent + has agent is a relation between a process and an entity, where the entity is present throughout the process and is a causal participant in the process. - + @@ -110,71 +110,71 @@ is connected to - core - nlp - A is connected to B iff there exists a fiat, material or temporal path between A and B. [S][T] + nlp + core + A is connected to B iff there exists a fiat, material or temporal path between A and B. [S][T] - + is adjacent to - core - nlp - OBO_REL:adjacent_to - A is adjacent to B iff there is a small, but non-zero distance between A and B + core + nlp + OBO_REL:adjacent_to + A is adjacent to B iff there is a small, but non-zero distance between A and B - + represents - core - a represents b when a serves as a sign, symbol or model of b. + core + a represents b when a serves as a sign, symbol or model of b. - + has measurement value - core - has measurement value is a relation between a quality/realizable and a measurement value. + core + has measurement value is a relation between a quality/realizable and a measurement value. - + has unit - core - has unit is a relation between a quantity and the unit it is a multiple of. + core + has unit is a relation between a quantity and the unit it is a multiple of. - + has output - core - sadi - has output is a relation between an process and an entity, where the entity is present at the end of the process. + core + sadi + has output is a relation between an process and an entity, where the entity is present at the end of the process. - + has input - core - sadi - has input is a relation between a process and an entity, where the entity is present at the beginning of the process. + core + sadi + has input is a relation between a process and an entity, where the entity is present at the beginning of the process. - + @@ -182,31 +182,31 @@ is causally related with - A transitive, symmetric, temporal relation in which one entity is causally related with another non-identical entity. - core + A transitive, symmetric, temporal relation in which one entity is causally related with another non-identical entity. + core - + is derived from - OBO_REL:derives_from - core - A transitive temporal relation in which one entity was materially formed from another non-identical entity. + core + A transitive temporal relation in which one entity was materially formed from another non-identical entity. + OBO_REL:derives_from - + precedes - core - A transitive, temporal relation in which one process precedes (has occured earlier than) another process. + A transitive, temporal relation in which one process precedes (has occured earlier than) another process. + core - + @@ -214,172 +214,172 @@ is variant of - core - is variant of: a relationship indicating that two entities are different (by some measure), but either achieve the same objectives in different ways or are permutations of one another (temporal, logical or otherwise) + core + is variant of: a relationship indicating that two entities are different (by some measure), but either achieve the same objectives in different ways or are permutations of one another (temporal, logical or otherwise) - + is direct part of - core - is direct part of is a relation between a specific part (at some level of granularity) and its whole. + core + is direct part of is a relation between a specific part (at some level of granularity) and its whole. - + is component part of - core - is component part of is a relation between a component and a whole, where the component is instrinsic to the whole, and loss of the part would change the kind that the whole is. + core + is component part of is a relation between a component and a whole, where the component is instrinsic to the whole, and loss of the part would change the kind that the whole is. - + is spatiotemporally related to - A is spatiotemporally related to B iff A is in the spatial or temporal vicinity of B - core + A is spatiotemporally related to B iff A is in the spatial or temporal vicinity of B + core - + is causally related from - a is causally related from b iff there is a causal chain of events from b to a - core + core + a is causally related from b iff there is a causal chain of events from b to a - + realizes - core - realizes is a relation between a process and a realizable entity (role, function, disposition). + core + realizes is a relation between a process and a realizable entity (role, function, disposition). - + describes - core - describes is a relation between one entity and another entity that it provides a description (detailed account of). + core + describes is a relation between one entity and another entity that it provides a description (detailed account of). - + refers to - nlp+ - core - refers to is a relation between one entity and the entity that it makes reference to. + core + nlp+ + refers to is a relation between one entity and the entity that it makes reference to. - + references - core - mentions - references is a relation between one entity and the entity that it makes reference to by name, but is not described by it. + core + mentions + references is a relation between one entity and the entity that it makes reference to by name, but is not described by it. - + in relation to - core - in relation to is a comparative relation to indicate that the instance of the class holding the relation exists in relation to another entity. + core + in relation to is a comparative relation to indicate that the instance of the class holding the relation exists in relation to another entity. - + exists at - core - exists at is a relation between an entity and a time measurement. + core + exists at is a relation between an entity and a time measurement. - + is comparable to - core - is comparable to is a relation between two entities that share at least one feature whose value can be compared. + core + is comparable to is a relation between two entities that share at least one feature whose value can be compared. - + measured at - core - measured at is a relation between a measurement value and the time measurement. + core + measured at is a relation between a measurement value and the time measurement. - + has data item - core - has data item is a relation between a dataset and any described / referrenced entity. + core + has data item is a relation between a dataset and any described / referrenced entity. - + is data item in - 'is data item in' is a relation between an entity that is described or referenced in a dataset. - core + core + 'is data item in' is a relation between an entity that is described or referenced in a dataset. - + has value - nlp - relations - core - sadi - A relation between a informational entity and its actual value (numeric, date, text, etc). - + nlp + core + relations + sadi + A relation between a informational entity and its actual value (numeric, date, text, etc). + entity - core - Every thing is an entity. - + core + Every thing is an entity. + material entity - core - A material entity is a physical entity that is spatially extended, exists as a whole at any point in time and has mass. - + core + A material entity is a physical entity that is spatially extended, exists as a whole at any point in time and has mass. + @@ -387,128 +387,128 @@ quality - core - A quality is an attribute that is intrinsically associated with its bearer (or its parts), but whose presence/absence and observed/measured value may vary. - + core + A quality is an attribute that is intrinsically associated with its bearer (or its parts), but whose presence/absence and observed/measured value may vary. + process - process+ - core - A process is an entity that is identifiable only through the unfolding of time, has temporal parts, and unless otherwise specified/predicted, cannot be identified from any instant of time in which it exists. - + A process is an entity that is identifiable only through the unfolding of time, has temporal parts, and unless otherwise specified/predicted, cannot be identified from any instant of time in which it exists. + core + process+ + disposition - core - A disposition is the tendency of a capability to be exhibited under certain conditions or in response to a certain stimulus (trigger). - solubility (to dissolve when put in fluid); fragility (disposition to break when dropped) - + A disposition is the tendency of a capability to be exhibited under certain conditions or in response to a certain stimulus (trigger). + core + solubility (to dissolve when put in fluid); fragility (disposition to break when dropped) + information content entity - ice+ - core - information content entity is an object that requires some background knowledge or procedure to correctly interpret. - + ice+ + core + information content entity is an object that requires some background knowledge or procedure to correctly interpret. + role - A role is a realizable entity that describes behaviours, rights and obligations of an entity in some particular circumstance. - core - + core + A role is a realizable entity that describes behaviours, rights and obligations of an entity in some particular circumstance. + function - A function is a capability that satisfies some agentive objective, or (evolutionary) optimization. - core - + A function is a capability that satisfies some agentive objective, or (evolutionary) optimization. + core + capability - capability+ - core - A capability is a realizable entity whose basis lies in one or more parts or qualities and reflects possility of an entity to act in a specified way under certain conditions or in response to a certain stimulus (trigger). - + A capability is a realizable entity whose basis lies in one or more parts or qualities and reflects possility of an entity to act in a specified way under certain conditions or in response to a certain stimulus (trigger). + core + capability+ + realizable entity - A realizable entity is an attribute that is exhibited under some condition and is realized in some process. - core - + A realizable entity is an attribute that is exhibited under some condition and is realized in some process. + core + movement - core - movement is the process in which an object is spatially displaced. - + core + movement is the process in which an object is spatially displaced. + interacting - core - interacting is a process characterized by the interaction between two or more entities. - + core + interacting is a process characterized by the interaction between two or more entities. + attribute - An attribute is a characteristic of some entity. - core - + An attribute is a characteristic of some entity. + core + object - An object is an entity that is wholly identifiable at any instant of time during which it exists. - core - + An object is an entity that is wholly identifiable at any instant of time during which it exists. + core + behaviour - Behaviour is the set of actions and mannerisms made by systems (biological or otherwise) in response to stimuli or inputs, whether internal or external, conscious or subconscious, overt or covert, and voluntary or involuntary. - core - behaviour+ - + behaviour+ + core + Behaviour is the set of actions and mannerisms made by systems (biological or otherwise) in response to stimuli or inputs, whether internal or external, conscious or subconscious, overt or covert, and voluntary or involuntary. + - sio-v1.0.16-core-subset.owl - - + sio-v1.17.0-core-subset.owl + + \ No newline at end of file diff --git a/ontology/sio/release/sio-subset-emotion.owl b/ontology/sio/release/sio-subset-emotion.owl index e6e410f7..a52a25f4 100644 --- a/ontology/sio/release/sio-subset-emotion.owl +++ b/ontology/sio/release/sio-subset-emotion.owl @@ -10,26 +10,26 @@ entity core Every thing is an entity. - + process - process+ - core A process is an entity that is identifiable only through the unfolding of time, has temporal parts, and unless otherwise specified/predicted, cannot be identified from any instant of time in which it exists. - + core + process+ + emotion - An emotion is a process (experience) that arises internally or from an involuntary physiological response to a stimulus. emotion++ - + An emotion is a process (experience) that arises internally or from an involuntary physiological response to a stimulus. + @@ -37,7 +37,7 @@ intent intent is a desire to realize a particular outcome. - + @@ -45,7 +45,7 @@ anger anger is disgust directed toward an equal status individual. - + @@ -53,7 +53,7 @@ hate Hate is a deep and emotional extreme dislike, directed against a certain object or class of objects. - + @@ -61,7 +61,7 @@ love love is an emotion of a strong affection and personal attachment. - + @@ -69,7 +69,7 @@ affection affection is an emotion characterized with a feeling or type of love for another living thing. - + @@ -77,7 +77,7 @@ angst angst is the intense feeling of apprehension, anxiety or inner turmoil. - + @@ -85,7 +85,7 @@ annoyance Annoyance is an unpleasant emtion that is characterized by a abnormal or excessive sensitivity to some external stimulus. - + @@ -93,7 +93,7 @@ anxiety anxiety is an emotion charactersized by intense feeling of fear and concern coupled with a physical response. - + @@ -101,7 +101,7 @@ apathy apathy is an emotion characterized by lack of interest, enthusiasm, or concern. - + @@ -109,7 +109,7 @@ arousal arousal is an emotion characterized by state of reactive to stimuli. It involves the activation of the reticular activating system in the brain stem, the autonomic nervous system and the endocrine system, leading to increased heart rate and blood pressure and a condition of sensory alertness, mobility and readiness to respond. - + @@ -117,7 +117,7 @@ awe awe is an emotion produced by that which is grand, sublime or powerful and is characterized by a combination of joy, fear and admiration/reverence/respect. - + @@ -125,7 +125,7 @@ boldness boldness is the trait of being willing to undertake things that involve risk or danger. - + @@ -133,7 +133,7 @@ boredom boredom is the emotion experience by those not interested in their surroundings or available activities. - + @@ -141,7 +141,7 @@ contempt contempt is disgust towards a lower status individual. - + @@ -149,7 +149,7 @@ contentment contentment is an emotion characterized by acknowledgement and satisfaction of the current state of affairs. - + @@ -157,7 +157,7 @@ curiosity curiosity is the strong desire to know or learn something. - + @@ -166,7 +166,7 @@ depressed depression is an unpleasant emotion linked to aversion to activity that can affect a person's thoughts, behavior, feelings and physical well-being. Depressed individuals may feel sad, anxious, empty, hopeless, worried, helpless, worthless, guilty, irritable, or restless. - + @@ -174,7 +174,7 @@ desire desire is a strong emotion of wanting to have something or wishing for something to happen. - + @@ -182,17 +182,17 @@ despair despair is depression, hopelessness or lack of hope. - + disappointment - disappointing disappointed + disappointing disappointment is the feeling of dissatisfaction that follows the failure of expectations or hopes to manifest. - + @@ -200,7 +200,7 @@ disgust Disgust is a feeling of revulsion or profound disapproval aroused by something unpleasant or offensive. - + @@ -208,7 +208,7 @@ dread dread is the instense negative emotion that induces fear and apprehension. - + @@ -216,7 +216,7 @@ ecstasy ecstacy is an emotion characterized by a heightened state of consciousness with total involvement of a subject. - + @@ -224,7 +224,7 @@ positive emotion A positive emotion is an emotion that feels good. - + @@ -232,7 +232,7 @@ negative emotion negative emotion is an emotion that does not feel good. - + @@ -240,7 +240,7 @@ embarassment Embarrassment is the emotion of intense discomfort with oneself, experienced upon having a socially unacceptable act or condition witnessed by or revealed to other. - + @@ -248,7 +248,7 @@ envy envy is an emotion that occurs when a person lacks another's (perceived) superior quality, achievement or possession and wishes that the other lacked it. - + @@ -256,7 +256,7 @@ euphoria euphoria is an emotion characterized by intense feelings of well-being, elation, happiness, ecstasy, excitement, and joy. - + @@ -264,7 +264,7 @@ excitement excitement is a positive emotion of feeling great enthusiasm and eagerness. - + @@ -272,7 +272,7 @@ fear Fear is a negative emotion induced by a perceived threat that induces one to hide or move quickly away from the location of the perceived threat. - + @@ -280,7 +280,7 @@ frustration Frustration is an emotion that arises from the perceived resistance to the fulfillment of individual will. - + @@ -288,11 +288,11 @@ gratitude gratification - appreciation - thankfullness gratefulness + thankfullness + appreciation Gratitude, thankfulness, gratefulness, or appreciation is a feeling, emotion or attitude in acknowledgment of a benefit that one has received or will receive. - + @@ -300,16 +300,16 @@ happiness happiness is an emotion characterized by positive or pleasant emotions ranging from contentment to intense joy. - + guilt - guilty Guilt is the emotion borne from feeling responsible for the commission of an offense and arises out of public humiliation. - + guilty + @@ -317,7 +317,7 @@ grief grief is an emotion in response to loss, whether physical or abstract including death, unemployment, ill health or the end of a relationship. - + @@ -325,7 +325,7 @@ hope hope is an emotion of belief in a positive outcome related to events and circumstances in one's life. - + @@ -333,7 +333,7 @@ hostility Hostility is the intense negative emotion of being in conflict or opposition to someone or something. - + @@ -341,7 +341,7 @@ hurt hurt is an unpleasant feeling, emotion or sensation. - + @@ -349,7 +349,7 @@ hysteria Hysteria is an unmanageable emotion. - + @@ -357,7 +357,7 @@ indifference indifference is an emotion characterized by lack of interest, concern, or sympathy. - + @@ -365,7 +365,7 @@ interest interest is the emotion of wanting to know or learn about something or someone. - + @@ -373,7 +373,7 @@ jealousy jealousy is an emotion and typically refers to the negative thoughts and feelings of insecurity, fear, and anxiety over an anticipated loss of something that the person values, particularly in reference to a human connection. - + @@ -381,7 +381,7 @@ joy joy is an emotion of intense happiness. - + @@ -389,7 +389,7 @@ loathing loathing is an intense dislike or disgust. - + @@ -397,7 +397,7 @@ loneliness Loneliness is an unpleasant emotion in which a person feels a strong sense of emptiness, yearning distress and solitude resulting from inadequate quantity or quality of social relationships. - + @@ -405,7 +405,7 @@ lust lust is the strong desire for sex. - + @@ -413,7 +413,7 @@ misery misery is a feeling of great unhappiness, suffering and/or pain. - + @@ -421,7 +421,7 @@ panic Panic is a sudden emotion of fear which is so strong as to dominate or prevent reason and logical thinking, replacing it with overwhelming feelings of anxiety and frantic agitation consistent with an animalistic fight-or-flight reaction. - + @@ -429,7 +429,7 @@ passion passion is the intense desire for something. - + @@ -437,7 +437,7 @@ pity Pity is the emotion of sadness or sorrow for another. - + @@ -445,7 +445,7 @@ pleasure pleasure is an emotion of happy satisfaction and enjoyment. - + @@ -453,7 +453,7 @@ pride pride is an emotion of satisfaction of attachment toward one's own or another's choices and actions, or toward a whole group of people, and is a product of praise, independent self-reflection, or a fulfilled feeling of belonging. - + @@ -461,7 +461,7 @@ rage Rage is a feeling of intense anger that is associated with the Fight-or-flight response. - + @@ -469,7 +469,7 @@ regret regret is a feeling of sadness, repentance, or disappointment over something that has happened or been done. - + @@ -477,7 +477,7 @@ remorse remorse is an emotion of personal regret felt by a person after he or she has committed an act which they deem to be shameful, hurtful, or violent. - + @@ -488,7 +488,7 @@ sad unhappy sadness is emotional pain associated with, or characterized by feelings of disadvantage, loss, despair, helplessness, sorrow, and rage. - + @@ -496,7 +496,7 @@ satisfaction satisfaction is an emotion of fulfillment of one's wishes, expectations, or needs, or the pleasure derived from this. - + @@ -504,7 +504,7 @@ shame shame is the emotion borne from feeling responsible for the commission of an offense. - + @@ -512,7 +512,7 @@ shock shock is an emotion of sudden upset or surprise. - + @@ -520,7 +520,7 @@ shyness shyness is an emotion of apprehension, lack of comfort, or awkwardness experienced when in proximity to, approaching, or being approached by other individuals, especially in new situations or with unfamiliar individuals. - + @@ -528,7 +528,7 @@ sorrow sorrow is the emotion that is characterized by a long term state of intense sadness, distress and a degree of resignation (not accepting). - + @@ -536,7 +536,7 @@ suffering Suffering is the unpleasant emotion and aversion associated with the perception of harm or threat of harm in an individual. - + @@ -544,7 +544,7 @@ surprise surprise is a brief emotion experienced as the result of an unexpected event. - + @@ -552,7 +552,7 @@ terror terror is the extreme feeling of fear. - + @@ -560,7 +560,7 @@ wonder wonder is an emotion of perceiving something very rare or unexpected, but not threatening. - + @@ -568,7 +568,7 @@ worry worry is the emotion characterized by concer over a real or imaginary issue. - + @@ -576,7 +576,7 @@ apprehension apprehension is the negative emotion that something unpleasant will occur. - + @@ -584,7 +584,7 @@ resentment resentment is disgust directed toward a higher status individual. - + @@ -592,17 +592,17 @@ pain Pain is an unpleasant sensory and emotional experience associated with actual or potential tissue damage, or described in terms of such damage. - + behaviour - Behaviour is the set of actions and mannerisms made by systems (biological or otherwise) in response to stimuli or inputs, whether internal or external, conscious or subconscious, overt or covert, and voluntary or involuntary. - core behaviour+ - + core + Behaviour is the set of actions and mannerisms made by systems (biological or otherwise) in response to stimuli or inputs, whether internal or external, conscious or subconscious, overt or covert, and voluntary or involuntary. + @@ -610,7 +610,7 @@ humiliation Humiliation is the abasement of pride, which creates mortification or leads to a state of being humbled or reduced to lowliness or submission. - + @@ -618,26 +618,26 @@ hunger hunger is the craving for food. - + discouragement - Discouragement is the emtion of having lost confidence or enthusiasm. discouraged - + Discouragement is the emtion of having lost confidence or enthusiasm. + satisfaction - contentment pleasure + contentment satisfaction is the emotion of fulfillling one's wishes, expectations, or needs. - + @@ -645,7 +645,7 @@ suicidal suicidal is the emotion of being deeply unhappy or depressed with thoughts of killing one's self. - + @@ -654,22 +654,22 @@ irritability is the negative emotion of quick excitability to annoyance, impatience, or anger. irritable - + indecision - indecisiveness indecision is the emotion of being unable to choose between two or more possible courses of action. - + indecisiveness + - sio-v1.0.16-emotion-subset.owl - - + sio-v1.17.0-emotion-subset.owl + + \ No newline at end of file diff --git a/ontology/sio/release/sio-subset-equivs.owl b/ontology/sio/release/sio-subset-equivs.owl index c9c44852..565927f1 100644 --- a/ontology/sio/release/sio-subset-equivs.owl +++ b/ontology/sio/release/sio-subset-equivs.owl @@ -5,16790 +5,16820 @@ - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - 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- + sio-v1.17.0-equivs-subset.owl + + \ No newline at end of file diff --git a/ontology/sio/release/sio-subset-geometry.owl b/ontology/sio/release/sio-subset-geometry.owl index c513cde8..4e1416a6 100644 --- a/ontology/sio/release/sio-subset-geometry.owl +++ b/ontology/sio/release/sio-subset-geometry.owl @@ -14,7 +14,7 @@ position along the line corresponds to a numeric or categorical value.The left vertical and bottom horizontal lines with tickmarks in Graph 1 http://tinyurl.com/opwnvm The value of a plotted geometric objects (e.g. point) can be obtained from the perpendicular projection of the position of the object onto the axis. Axis may also be associated with a textual description of what the values on the axis represents. - + @@ -22,7 +22,7 @@ Graph 1 http://tinyurl.com/opwnvm Cartesian coordinate axis A Cartesian coordinate axis is an axis whose behavior follows that of a Cartesian coordinate system. - + @@ -31,20 +31,20 @@ Graph 1 http://tinyurl.com/opwnvm + horizontal axis An x-axis is a Cartesian coordinate axis that is aligned with the horizon. In most figures, this axis represents categories, such as months, market segments, or other non-numeric data. The horizontal axis in http://tinyurl.com/opwnvm - horizontal axis - + y-axis - vertical axis A y-axis is a Cartesian coordinate axis that is spatially oriented perpendicular to the x-axis. - + vertical axis + @@ -52,7 +52,7 @@ Graph 1 http://tinyurl.com/opwnvm z-axis A z-axis is a Cartesian coordinate axis that is spatially oriented normal to the plane formed by the x- and y-axes. - + @@ -63,7 +63,7 @@ Graph 1 http://tinyurl.com/opwnvm A category axis is an axis in which the position along the line is partioned into categories. The horizontal axis corresponding to months of the year in graph 4 of http://tinyurl.com/opwnvm - + @@ -74,7 +74,7 @@ of http://tinyurl.com/opwnvm A primary category axis is a category axis that either defines the sole value range or holds the larger set of categorical values specified by the secondary category axis. The category axis that corresponds to years in Graph 1 of http://tinyurl.com/opwnvm - + @@ -84,7 +84,7 @@ http://tinyurl.com/opwnvm A secondary category axis is a category axis that defines a finer granular part (or subset) of the value range of the primary category axis. The category axis that corresponds to months in Graph 1 of http://tinyurl.com/opwnvm - + @@ -95,7 +95,7 @@ http://tinyurl.com/opwnvm A value axis is an axis in which the position along the line is partioned into numeric values. The value axis that ranges from 3.0 to 7.4 and corresponds to billions of dollars in Graph 1 of http://tinyurl.com/opwnvm - + @@ -104,7 +104,7 @@ billions of dollars in Graph 1 of http://tinyurl.com/opwnvm A left value axis is a value axis that is spatially positioned to the left of the plot area. The value axis that ranges from 3.0 to 7.4 and corresponds to billions of dollars in Graph 1 of http://tinyurl.com/opwnvm - + @@ -112,7 +112,7 @@ billions of dollars in Graph 1 of http://tinyurl.com/opwnvm right value axis A right value axis is a value axis that is spatially positioned to the right of the plot area. - + @@ -120,7 +120,7 @@ billions of dollars in Graph 1 of http://tinyurl.com/opwnvm scaled value axis A scaled value axis is a value axis in which the value range was subject to a mathematic transformation. - + @@ -129,7 +129,7 @@ billions of dollars in Graph 1 of http://tinyurl.com/opwnvm A linear value axis is a value axis that corresponds to a scaling factor of 1 of the value range. - + @@ -137,7 +137,7 @@ billions of dollars in Graph 1 of http://tinyurl.com/opwnvm logarithmic value axis A logarithmic value axis is a scaled value axis that corresponds to a scaling factor of the logarithm of the value range. - + @@ -145,7 +145,7 @@ billions of dollars in Graph 1 of http://tinyurl.com/opwnvm data point A data point is a point that which corresponds to the projection of the values of measurement data against the axes of a statistical graph. - + @@ -153,7 +153,7 @@ billions of dollars in Graph 1 of http://tinyurl.com/opwnvm global maximal stationary point A global maximum stationary point is a data point that corresponds to a measurement value is larger than that of all other plotted datapoints. - + @@ -161,7 +161,7 @@ billions of dollars in Graph 1 of http://tinyurl.com/opwnvm global minimal stationary point A global minimum data point is a data point that corresponds to a measurement value is smaller than that of all other plotted datapoints. - + @@ -169,7 +169,7 @@ billions of dollars in Graph 1 of http://tinyurl.com/opwnvm polygon vertex A polygon vertex is a terminal point at which two polygon edges meet and are part of a polygon. - + @@ -177,7 +177,7 @@ billions of dollars in Graph 1 of http://tinyurl.com/opwnvm polygon edge A polygon edge is a line segment joining two polygon vertices. - + @@ -185,7 +185,7 @@ billions of dollars in Graph 1 of http://tinyurl.com/opwnvm polyhedral skeleton A polyhedral skeleton is a collection of polygon edges. - + @@ -193,7 +193,7 @@ billions of dollars in Graph 1 of http://tinyurl.com/opwnvm polygonal face A polygonal face is a polygon bounded by a circuit of polygon edges, and includes the flat (plane) region inside the boundary. - + @@ -201,7 +201,7 @@ billions of dollars in Graph 1 of http://tinyurl.com/opwnvm polyhedral surface A polyhedral surface is composed of polygonal faces. - + @@ -209,15 +209,15 @@ billions of dollars in Graph 1 of http://tinyurl.com/opwnvm polygon A polygon is a planar entity that is bounded by a closed path or circuit, composed of a finite connected sequence3 of straight line segments. - + geometric entity - A geometric entity is an information content entity that pertains to the structure and topology of a space. geometry+ - + A geometric entity is an information content entity that pertains to the structure and topology of a space. + @@ -225,7 +225,7 @@ billions of dollars in Graph 1 of http://tinyurl.com/opwnvm point A point is a geometric entity that is located in a zero-dimensional spatial region and whose position is defined by its coordinates in some coordinate system. - + @@ -234,7 +234,7 @@ billions of dollars in Graph 1 of http://tinyurl.com/opwnvm An endpoint is a terminal point that is the last of an ordered pair of points. - + @@ -243,7 +243,7 @@ pair of points. A start point is a terminal point which is the first of an ordered pair of points. - + @@ -251,7 +251,7 @@ pair of points. line A line is curve that extends in a single dimension (e.g. straight line; exhibits no curvature), and is composed of at least two fully connected points. - + @@ -259,7 +259,7 @@ pair of points. line segment A line segment is a line and a part of a curve that is (inclusively) bounded by two terminal points. - + @@ -267,7 +267,7 @@ pair of points. tick mark A tick mark is a line segment that is spatially positioned perpendicular to the axis of a statistical graph and indicates the position of a specific numeric value (which may be indicated by an adjacent value label) on a value axis, or is one of a pair of tick marks that delineates the boundary of a categorical value (which may be indicated by an adjacent category label) on the categorical axis. - + @@ -275,7 +275,7 @@ pair of points. major tick mark A major tick mark is a tick mark that indicates the position of a specific numeric value and is adjacent to its value label on the value axis, or is one of a pair of tick marks that delineates the boundary of a categorical value indicated by an adjacent category label on the categorical axis. - + @@ -283,7 +283,7 @@ pair of points. minor tick mark A minor tick mark is a tick mark that indicates the position of a specific numeric value but has no adjacent value label, or is one of a pair of tick marks that delineates the boundary of a categorical value but has no adjacent category label on the categorical axis. - + @@ -291,7 +291,7 @@ pair of points. ray A ray is a line which that is bounded by a startpoint and extends outwards infinitely along one dimension. - + @@ -299,7 +299,7 @@ pair of points. quadrilateral A quadrilateral is a polygon with composed of four points and four line segments, in which each point is fully connected to two other points. - + @@ -307,7 +307,7 @@ pair of points. rectangle A rectangle is a quadrilateral in which one pair of line segments are parallel and the other pair are perpendicular to the first pair. - + @@ -315,7 +315,7 @@ pair of points. bar A bar is a rectangle that is located in the plot of a statistical graph in which its length is proportional to the values that it represents. - + @@ -323,7 +323,7 @@ pair of points. triangle A triangle is a polygon composed of three points and three line segments, in which each point is fully connected to another point along through the line segment. - + @@ -332,7 +332,7 @@ pair of points. A directed line segment is a line segment that is contained by an ordered pair of endpoints (a start point and an endpoint). - + @@ -340,7 +340,7 @@ of endpoints (a start point and an endpoint). arrowed line segment An arrowed line is a directed line segment in which one or both endpoints is tangentially part of a triangle that bisects the line. - + @@ -349,7 +349,7 @@ of endpoints (a start point and an endpoint). A single arrowed line is directed line in which the endpoint is tangentially part of a triangle that bisects the line. - + @@ -357,7 +357,7 @@ of endpoints (a start point and an endpoint). double arrowed line segment A double arrowed line is an arrowed line in which both terminal points are tangentially part of different triangles that bisect the line. - + @@ -365,7 +365,7 @@ of endpoints (a start point and an endpoint). horizontal line A horizontal line is a line that is positionally oriented with the horizon. - + @@ -373,7 +373,7 @@ of endpoints (a start point and an endpoint). vertical line A vertical line is a line that is positionally oriented perpendicular to the horizon. - + @@ -381,7 +381,7 @@ of endpoints (a start point and an endpoint). trend line A trend line is a line, line segment or ray that is part of a statistical graph which indicates a statistical or visual direction across categorical or value data. - + @@ -389,7 +389,7 @@ of endpoints (a start point and an endpoint). increasing line An increasing line is a line segment in which the startpoint and endpoint are ordered along one dimension and the difference of values in a second dimension is positive. - + @@ -397,7 +397,7 @@ of endpoints (a start point and an endpoint). decreasing line An decreasing line is a line segment in which the startpoint and endpoint are ordered along one dimension and the difference of values in a second dimension is negative. - + @@ -405,7 +405,7 @@ of endpoints (a start point and an endpoint). plateau line An plateau line is a line segment in which the startpoint and endpoint are ordered along one dimension and the difference of values in a second dimension is zero. - + @@ -413,7 +413,7 @@ of endpoints (a start point and an endpoint). drop line A drop line is a statistical graph line that vertically or horizontally connects a data series line with a value axis in a statistical graph. - + @@ -421,7 +421,7 @@ of endpoints (a start point and an endpoint). terminal point A terminal point is a point that defines the finite extension of a line. - + @@ -429,7 +429,7 @@ of endpoints (a start point and an endpoint). surface normal A surface normal is a vector that is perpendicular to a flat surface. - + @@ -437,7 +437,7 @@ of endpoints (a start point and an endpoint). positionally oriented line A positionally oriented line is a line that is positioned against some axis of reference. - + @@ -445,7 +445,7 @@ of endpoints (a start point and an endpoint). statistical graph line A statistical graph line is a line used in a statistical graph to communicate some trend or feature of the embedded data. - + @@ -453,7 +453,7 @@ of endpoints (a start point and an endpoint). infinite line An infinite line is a line that extends outwards in both directions of a single dimensional and is not bounded by terminal points. - + @@ -461,7 +461,7 @@ of endpoints (a start point and an endpoint). vector A vector is a line which that is bounded by a startpoint and extends outwards along one dimension. - + @@ -469,7 +469,7 @@ of endpoints (a start point and an endpoint). vertex normal A vertext normal is the normalized average of the surface normals of the faces that contain that vertex. - + @@ -478,7 +478,7 @@ of endpoints (a start point and an endpoint). A polyline is a connected sequence of line segments. polygonal chain, polygonal curve, polygonal path, piecewise linear curve - + @@ -486,7 +486,7 @@ of endpoints (a start point and an endpoint). collection of points A collection of points is a geometric entity that contains a non-zero set of geometric points. - + @@ -494,7 +494,7 @@ of endpoints (a start point and an endpoint). curve A curve is a geometric entity that may be located in n-dimensional spatial region whose extension may be n-dimensional, is composed of at least two fully connected points and does not intersect itself. - + @@ -502,7 +502,7 @@ of endpoints (a start point and an endpoint). curve segment A curve segment is a part of a curve that consists of at least three points. - + @@ -510,7 +510,7 @@ of endpoints (a start point and an endpoint). stationary point A stationary point is a point that is part of a curve in which the derivative at that point is zero, and hence its value is at least a local maximum or minimum. - + @@ -518,7 +518,7 @@ of endpoints (a start point and an endpoint). local maximum stationary point A local maximum stationary point is a point that has a higher value in some axis than adjacent points. - + @@ -526,7 +526,7 @@ of endpoints (a start point and an endpoint). local minimum stationary point A local minimum stationary point is a point that has a lower value in some axis than adjacent points. - + @@ -534,7 +534,7 @@ of endpoints (a start point and an endpoint). top value axis A top value axis is a value axis that is spatially positioned to the top of the plot area. - + @@ -542,13 +542,13 @@ of endpoints (a start point and an endpoint). bottom value axis A bottom value axis is a value axis that is spatially positioned to the bottom of the plot area. - + - sio-v1.0.16-geometry-subset.owl - - + sio-v1.17.0-geometry-subset.owl + + \ No newline at end of file diff --git a/ontology/sio/release/sio-subset-ice.owl b/ontology/sio/release/sio-subset-ice.owl index 83175b5e..7eed817c 100644 --- a/ontology/sio/release/sio-subset-ice.owl +++ b/ontology/sio/release/sio-subset-ice.owl @@ -10,7 +10,7 @@ social entity A social entity pertains to the interaction among individuals and groups. - + @@ -18,7 +18,7 @@ social structure A social structure is a social entity which consists of relationships between two or more entities. - + @@ -26,7 +26,7 @@ organization An organization is a collective with a complex articulation of tasks, roles and responsibilities. - + @@ -34,7 +34,7 @@ geographic position A geographic position is the coordinate of an entity against some geographic coordinate system. - + @@ -43,7 +43,7 @@ ice+ core information content entity is an object that requires some background knowledge or procedure to correctly interpret. - + @@ -51,7 +51,7 @@ biopolymer sequence A sequence is a primary structure descriptor in which each of the letters in the string represents a monomeric unit (residue) in which adjacent letters represent the connectivity between the monomeric units. - + @@ -59,7 +59,7 @@ start date A start date is a time instant pertaining to the date of the beginning of a process. - + @@ -67,7 +67,7 @@ end date An end date is a time instant pertaining to date of the end of a process. - + @@ -76,7 +76,7 @@ A spatial quantity is a quantity obtained from measuring the spatial extent of an entity physical dimensional quantity - + @@ -84,7 +84,7 @@ 1D extent quantity A quantity that extends in single dimension. - + @@ -92,7 +92,7 @@ depth depth is the dimensional extent into a plane of a 3D projection of the object. - + @@ -100,7 +100,7 @@ height height is the one dimensional extent along the vertical projection of a 3D object from a base plane of reference. - + @@ -108,7 +108,7 @@ length length is the longer dimensional extent along a 2D projection of the object. - + @@ -116,7 +116,7 @@ width width is the shorter dimensional extent perpendicular to a 2D projection of the object. - + @@ -124,7 +124,7 @@ thickness thickness is the shortest dimensional extent of a 3D projection of an object. - + @@ -132,7 +132,7 @@ 2D extent quantity A quantity that extends in two dimensions. - + @@ -140,7 +140,7 @@ area area is a quantity that pertains to the extent of a two-dimensional surface or shape, or planar lamina, in the plane. - + @@ -148,7 +148,7 @@ length of perimeter A perimeter is a length of the outline that surrounds a two-dimensional shape. - + @@ -156,7 +156,7 @@ circumference circumference is the length of the outline of a circle or ellipse. it is defined as c = 2*pi*r, where r is the radius. - + @@ -164,7 +164,7 @@ 3D extent quantity A quantity that extends in three dimensions. - + @@ -172,7 +172,7 @@ volume volume is the quantity of three-dimensional space enclosed by some closed boundary. - + @@ -180,7 +180,7 @@ quantity A quantity is an informational entity that gives the magnitude of a property. - + @@ -188,7 +188,7 @@ position A measurement of a spatial location relative to a frame of reference or other objects. - + @@ -196,7 +196,7 @@ orientation orientation is an angle between the bearer and an axis, or the angle between the bearer and another object. - + @@ -204,7 +204,7 @@ namespace A namespace is an informational entity that defines a logical container for a set of symbols or identifiers. - + @@ -212,7 +212,7 @@ data item A data item consists of information that has been collected/generated towards some purpose. - + @@ -220,7 +220,7 @@ measurement value A measurement value is a quantitative description that reflects the magnitude of some attribute. - + @@ -228,7 +228,7 @@ coordinate A coordinate is a measurement of position in n-dimensional space. - + @@ -237,7 +237,7 @@ A Cartesian coordinate is the signed distance of a point to some referent line. - + @@ -245,7 +245,7 @@ polar coordinate A polar coordinate is a position characterized by a distance from a fixed point and an angle from a fixed direction. - + @@ -253,16 +253,16 @@ unit of measurement A unit of measurement is a definite magnitude of a physical quantity, defined and adopted by convention and/or by law, that is used as a standard for measurement of the same physical quantity. - + mathematical entity - math+ A mathematical entity is an information content entity that are components of a mathematical system or can be defined in mathematical terms. - + math+ + @@ -270,7 +270,7 @@ plan A plan is a set of intended actions, through which one expects to achieve a goal. - + @@ -278,16 +278,16 @@ generic name A generic name is the preferred name provided by manufacturer. - + language entity - A language entity implements some language specification for the visual interpretation and is part of some document. nlp+ - + A language entity implements some language specification for the visual interpretation and is part of some document. + @@ -295,7 +295,7 @@ visual language entity A visual language entity is a language entity that is expressed through physical expression of manual. - + @@ -305,7 +305,7 @@ A figure is a graphical entity which consists of a visual (n-dimentional) arrangement of information entities. diagram - + @@ -314,7 +314,7 @@ An image is an affine projection of a visual entity to a two dimensional surface. depiction - + @@ -323,7 +323,7 @@ A photograph is an image created by light falling on a light-sensitive surface. photo - + @@ -332,7 +332,7 @@ A statistical graph is a figure that displays the relationship among numeric data and/or mathematical functions. chart - + @@ -340,7 +340,7 @@ question A question is a linguistic expression used to make a request for information. - + @@ -348,7 +348,7 @@ publication A publication is a document that has been made available by a publisher. - + @@ -356,7 +356,7 @@ record A record is a document containing a collection of statements about some entity. - + @@ -364,16 +364,16 @@ specification A specification is a description of the essential technical attributes/requirements for an object or procedure, and may be used to determine that the object / procedure meets its requirements/attributes. - + action specification - An action specification is a specification composed of a sequence of instructions to achieve some objective. effective specification - + An action specification is a specification composed of a sequence of instructions to achieve some objective. + @@ -381,7 +381,7 @@ algorithm An algorithm is an effective method expressed as a finite list of well-defined instructions for calculating a function. - + @@ -389,7 +389,7 @@ software entity A software entity is a computational entity that can be interpreted by or directly executed by a processing unit. - + @@ -397,7 +397,7 @@ software method A software method (also called subroutine, subprogram, procedure, method, function, or routine) is software designed to execute a specific task. - + @@ -405,7 +405,7 @@ software module A software module is software composed of a collection of software methods. - + @@ -413,7 +413,7 @@ software library A software library is software composed of a collection of software modules and/or software methods in a form that can be statically or dynamically linked to some software application. - + @@ -421,7 +421,7 @@ software application A software application is software that can be directly executed by some processing unit. - + @@ -429,7 +429,7 @@ software interpreter A software interpreter is a software application that executes some specified input software. - + @@ -437,7 +437,7 @@ software script A software script is software whose instructions can be executed using a software interpreter. - + @@ -445,7 +445,7 @@ language Language is a language entity which is the result of encoding and decoding information through systematic creation and usage of systems of symbols, each pairing a specific sign with an intended meaning, established through social conventions - + @@ -453,7 +453,7 @@ symbol A symbol is a proposition about what an entity represents. - + @@ -461,7 +461,7 @@ book A book is a publication composed of a large number of entries. - + @@ -469,7 +469,7 @@ chapter A chapter is a document section of a book or thesis. - + @@ -477,7 +477,7 @@ character A character is a language symbol used to construct words. - + @@ -485,7 +485,7 @@ novel A novel is a fictitious prose narrative of book length, typically representing character and action with some degree of realism. - + @@ -493,7 +493,7 @@ paragraph A paragraph is a self-contained unit of written discourse consisting of one or more sentences. - + @@ -501,7 +501,7 @@ document section A document section is a component of a document. - + @@ -509,7 +509,7 @@ sentence A sentence is a grammatical unit consisting of one or more words that bear minimal syntactic relation to the words that precede or follow it. - + @@ -517,7 +517,7 @@ word A word is the smallest free form (an item that may be expressed in isolation with semantic or pragmatic content) in a language. - + @@ -525,7 +525,7 @@ identifier An identifier is a label that specifically refers to (identifies) an entity (instance/type). - + @@ -533,7 +533,7 @@ name A name is a label used to identify an entity. - + @@ -541,7 +541,7 @@ preferred name A preferred name is the name that is generally used by some organization. - + @@ -549,7 +549,7 @@ common name A common name is a name that is commonly used. - + @@ -557,7 +557,7 @@ brand name A brand name is a trademarked and marketed name of a product. - + @@ -565,16 +565,16 @@ scientific name A scientific name is a name given through scientific nomenclature. - + magazine - http://purl.org/ontology/bibo/Magazine A magazine is a periodical that typically contains essays, stories, poems, etc., by many writers, and often photographs and drawings, frequently specializing in a particular subject or area, as hobbies, news, or sports. - + http://purl.org/ontology/bibo/Magazine + @@ -582,7 +582,7 @@ workflow A workflow is an algorithm that is is a depiction of a sequence of operations to achieve one or more objectives. - + @@ -590,7 +590,7 @@ ontology document An ontology document is a document that contains an ontology. - + @@ -598,7 +598,7 @@ pattern A pattern is a generalized representation of some repeatable concrete or informational item. - + @@ -607,7 +607,7 @@ A sequence motif is a pattern of nucleotides in a DNA sequence or amino acids in a protein. - + @@ -615,7 +615,7 @@ descriptor A descriptor (index term, subject term, subject heading) is a term that captures the essence of the topic of a document. - + @@ -623,7 +623,7 @@ definition A definition is a description that succintly characterizes an entity. - + @@ -631,7 +631,7 @@ description A description is language entity in which elements of a language (formal or natural) are used to characterize an entity. - + @@ -639,7 +639,7 @@ category A category is a class of entities having particular shared characteristics. - + @@ -647,7 +647,7 @@ class A class is a collection of sets which can be unambiguously defined by a property that all its members share. - + @@ -655,7 +655,7 @@ web service A web service is a software application that can be accessed over a network, such as the Internet, and executed on a remote system hosting the requested services. - + @@ -663,7 +663,7 @@ criterion A criterion is a specification to describe properties used for evaluation. - + @@ -672,7 +672,7 @@ An inclusion criterion is a criterion that must be present to satisfy some objective. - + @@ -680,7 +680,7 @@ exclusion criterion An exclusion criterion is a criterion that must be absent to satistify the objective. - + @@ -688,7 +688,7 @@ parameter A parameter is variable whose value changes the characteristics of a system or a function. - + @@ -696,7 +696,7 @@ keyword A keyword is a descriptor in which the association of the word with the entity facilitates information retrieval. - + @@ -704,7 +704,7 @@ document A document is a bounded physical or digital representation of a body of information designed with the capacity (and usually intent) to communicate. - + @@ -712,7 +712,7 @@ list A list is any enumeration of a set of items. - + @@ -720,7 +720,7 @@ manuscript A manuscript is a document prior to publication. - + @@ -728,7 +728,7 @@ note A note is a brief document. - + @@ -736,7 +736,7 @@ patent A patent is an information entity granted by a patent issuing authority which confers upon the patenter the sole right to make, use and sell an invention for a set period of time. - + @@ -744,7 +744,7 @@ article An article is a publication that is stand-alone section of a larger work. - + @@ -752,7 +752,7 @@ blog A blog is a publication accessible at some website and is typically about various experiences. - + @@ -760,7 +760,7 @@ book volume A book volume is a book that is part of a collection. - + @@ -768,7 +768,7 @@ conference proceedings A conference proceedings is a book composed of papers presented at a conference. - + @@ -776,7 +776,7 @@ book series A book series is a collection of books that have been sequentially published. - + @@ -784,7 +784,7 @@ edited publication An edited publication is a publication that has been examined and potentially changed by an editor. - + @@ -793,7 +793,7 @@ http://purl.org/ontology/bibo/Journal A journal is a a peer-reviewed periodical in which scholarship relating to a particular academic discipline is published. - + @@ -801,7 +801,7 @@ manual A manual is a document that instructs on the usage of a device. - + @@ -810,7 +810,7 @@ A periodical is a publication that appears on a regular schedule. http://purl.org/ontology/bibo/Periodical - + @@ -819,7 +819,7 @@ A newspaper is a periodical publication containing news regarding current events, informative articles, diverse features, editorials, and advertising. http://purl.org/ontology/bibo/Newspaper - + @@ -827,7 +827,7 @@ technical report A technical report is a publication published by a school or other institution, usually numbered within a series. - + @@ -835,7 +835,7 @@ thesis document A thesis document is the written research component of a post-secondary institution that contains a statement supported by arguments. - + @@ -843,7 +843,7 @@ honor's thesis An honor's thesis is a thesis prepared as a requirement for an honor's undergraduate degree. - + @@ -851,7 +851,7 @@ master's thesis A Master's thesis is a thesis prepared as a requirement for a Master's degree. - + @@ -859,7 +859,7 @@ phd thesis A PhD thesis is a thesis prepared as a requirement for a doctoral degree. - + @@ -867,7 +867,7 @@ booklet A booklet is a document that lacks a named publisher or sponsoring institution. - + @@ -875,7 +875,7 @@ diary A diary is a document which describes day-to-day experiences. - + @@ -883,7 +883,7 @@ document component A bibliographic attribute is an attribute related to publications. - + @@ -891,7 +891,7 @@ address An address is a position that indicates the physical location of some entity using a social convention. - + @@ -899,7 +899,7 @@ affiliation An affiliation is a social relation which indicates the partnership between two or more entities. - + @@ -907,7 +907,7 @@ citation A citation is a textual entity which denotes a source described in the bibliography or reference section of a document. - + @@ -915,7 +915,7 @@ document title A document title is a textual entity that summarizes the topic of the document in one sentence. - + @@ -923,7 +923,7 @@ reference A reference is a textual entity that describes a single source used in the preparation or development of the work. - + @@ -931,7 +931,7 @@ page range A page range denotes the start and end page in some document. - + @@ -939,7 +939,7 @@ page total A page total is a textual entity that is about the number of pages in some informational entity. - + @@ -948,7 +948,7 @@ a label is a term that is associated with some entity - + @@ -956,7 +956,7 @@ language label A language label is a label that denotes the language of a textual entity. - + @@ -964,7 +964,7 @@ first name A first name is a name that denotes a specific individual between members of a group of individuals, whose members usually share the same surname. - + @@ -972,16 +972,16 @@ last name A last name (surname) is a name added to a given name and is part of a personal name and is often the family name. - + personal name - full name A personal name is a name to identify an individual person and usually comprises of a first name and a last name. - + full name + @@ -989,7 +989,7 @@ legal name A legal name is a name given at birth, or which appears on their birth certificate, marriage certificate, or change of name certificate. - + @@ -997,7 +997,7 @@ title A title is a textual entity that summarily describes some entity. - + @@ -1005,7 +1005,7 @@ document version A document version is a version of a work in some sequence of derivative works. - + @@ -1013,7 +1013,7 @@ abstract section An abstract section is a document section that provides brief summary of a document that explains the main argument(s), topic(s) or findings. - + @@ -1021,7 +1021,7 @@ acknowledgements section An acknowledgements section is a document section that identifies individuals, groups or organizations for their support in the development of the work. - + @@ -1029,7 +1029,7 @@ author contribution section An author contribution section is a document section that describes the contribution of the authors. - + @@ -1037,7 +1037,7 @@ author section An author section is a document section that lists the contributing authors. - + @@ -1045,7 +1045,7 @@ bibliography section A bibliography section is a document section that is composed of a list of references used in the development of the work. - + @@ -1053,7 +1053,7 @@ copyright section A copyright section is a document section that contains a notice of copyright. - + @@ -1061,7 +1061,7 @@ correspondence section A correspondence section is a document section that contains the details for contacting the corresponding author. - + @@ -1069,7 +1069,7 @@ discussion section The discussion section is a document section containing a summary of the findings, a reflection on the significance of findings, comparison with related work, among others. - + @@ -1077,7 +1077,7 @@ introduction section An introduction section is a document section that generally provides background, motivation and goals of the work. - + @@ -1085,7 +1085,7 @@ materials and methods section The materials and methods section is a document section containing a description of the materials and methods used in the study. - + @@ -1093,7 +1093,7 @@ materials section The materials section is a document section containing a description of the materials used in the study. - + @@ -1101,7 +1101,7 @@ methods section The methods section is a document section containing a description of the methods used in the study. - + @@ -1109,7 +1109,7 @@ results section The results section is a document section describing the main findings of the study. - + @@ -1117,7 +1117,7 @@ table of contents The table of contents is a document section that lists all sections (and optionally subsections) in a sequential order along with their page number. - + @@ -1125,7 +1125,7 @@ implies (->) Implication is a logical operator that holds between a set T of propositions and a proposition B, when every model (or interpretation or valuation) of T is also a model of B. - + @@ -1133,7 +1133,7 @@ namespace label A namespace label is a short name for a namespace. - + @@ -1141,7 +1141,7 @@ logical operator A logical operator is a unary or binary relation to construct logical expressions. - + @@ -1149,7 +1149,7 @@ conjunction (and) AND is a logical operator that has the value true if both of its operands are true, otherwise a value of false. - + @@ -1157,7 +1157,7 @@ proposition A proposition is a sentence expressing something true or false. - + @@ -1166,7 +1166,7 @@ A dimensionless quantity is a quantity that has no associated unit. - + @@ -1174,7 +1174,7 @@ dimensional quantity A dimensional quantity is a quantity that has an associated unit. - + @@ -1182,7 +1182,7 @@ argument An argument is a set of one or more declarative sentences (or propositions) known as the premises along with another declarative sentence (or proposition) known as the conclusion. - + @@ -1190,7 +1190,7 @@ premise A premise is a proposition of an argument from which the conclusion is drawn. - + @@ -1198,7 +1198,7 @@ conclusion A conclusion is a proposition which is reached after considering the evidence, arguments or premises. - + @@ -1206,7 +1206,7 @@ deductive argument A deductive argument is an argument that asserts that the truth of the conclusion is a logical consequence of the premises. - + @@ -1214,7 +1214,7 @@ inductive argument An inductive argument is an argument that asserts that the truth of the conclusion is supported by the premises. - + @@ -1222,7 +1222,7 @@ sound argument A sound argument is a valid argument with true premises. - + @@ -1230,7 +1230,7 @@ valid argument A valid argument is an argument where the truth of the conclusion is a logical consequence of the premises and (consequently) its corresponding conditional is a necessary truth. - + @@ -1238,7 +1238,7 @@ invalid argument An invalid argument is an argument where the truth of the conclusion is false because it is not a logical consequence of the premises. - + @@ -1246,7 +1246,7 @@ term A term is a word or phrase used to denote one or more entities. - + @@ -1254,7 +1254,7 @@ mass mass is the quality of the amount of substance. - + @@ -1262,7 +1262,7 @@ disjunction (or) OR is a logical operator that results in true whenever one or more of its operands are true. - + @@ -1270,7 +1270,7 @@ negation (not) NOT is a logical operator in that has the value true if its operand is false. - + @@ -1278,7 +1278,7 @@ exclusive disjunction (xor) XOR, also called exclusive disjunction or (symbolized XOR, EOR, EXOR, or ⊕), is a type of logical disjunction on two operands that results in a value of true if exactly one of the operands has a value of true. - + @@ -1286,7 +1286,7 @@ hypothesis A hypothesis is a proposed explanation for a phenomenon. - + @@ -1294,7 +1294,7 @@ academic organization An academic organization is a lawfully recognized organization that confers diplomas, degrees and other forms of recognition of academic achievement. - + @@ -1302,7 +1302,7 @@ social relation A social relation is a social entity that describes a relationship between two or more individuals or groups. - + @@ -1310,7 +1310,7 @@ set A set is a collection of entities, for which there may be zero members. - + @@ -1318,16 +1318,16 @@ university A university is an institution of higher education and research which grants academic degrees in a variety of subjects and provides both undergraduate education and postgraduate education. - + collection of documents - http://purl.org/ontology/bibo/Collection A collection of documents is a non-zero set of documents. - + http://purl.org/ontology/bibo/Collection + @@ -1335,7 +1335,7 @@ website A website is a collection of documents published on the World Wide Web. - + @@ -1345,7 +1345,7 @@ A movie is a series of images that are displayed in rapid succession to give the impression of movement. film moving pictures - + @@ -1353,7 +1353,7 @@ excerpt An excerpt is a contiguous or discontiguous portion of a document. - + @@ -1361,7 +1361,7 @@ quote A quote is a excerpt that is attributed to a particular source. - + @@ -1369,7 +1369,7 @@ geographic image A geographic image is a photograph of some geographical area. - + @@ -1377,7 +1377,7 @@ web page A web page is a document that is published according to World Wide Web standards. - + @@ -1385,7 +1385,7 @@ email Email message is a digital document that is composed of a header and a body and is transmitted using the SMTP protocol. - + @@ -1393,7 +1393,7 @@ process number process number is a number associated with a process that denotes its ordinal position in a set of processes. - + @@ -1401,7 +1401,7 @@ letter A letter is a document that contains a personal communication from one part to another. - + @@ -1409,7 +1409,7 @@ edition number An edition number is count of a literary work edited and published, as by a certain editor or in a certain manner including being printed during some interval of time. - + @@ -1417,7 +1417,7 @@ volume number volume number is a count of a sequence of periodicals. - + @@ -1425,7 +1425,7 @@ functional specification A functional specification is a specification that describes the characteristics of an object. - + @@ -1433,7 +1433,7 @@ design specification A design specification is a specification that provides precise and explicit information about the requirements for a product design. - + @@ -1441,7 +1441,7 @@ spatial specification A specification for spatial location is an effective specification towards representation spatial position or spatial data. - + @@ -1450,7 +1450,7 @@ Longitude is a geographic position that refers to the angle east or west of a reference meridian between the two geographical poles to another meridian that passes through an arbitrary point. - + @@ -1458,7 +1458,7 @@ latitude Latitude is a geographic coordinate which refers to the angle from a point on the Earth's surface to the equatorial plane - + @@ -1466,7 +1466,7 @@ coordinate system A coordinate system is a specification for spatial location that uses a set of numbers, or coordinates, to uniquely determine the position of a point or other geometric element. - + @@ -1474,7 +1474,7 @@ cartesian coordinate system A Cartesian coordinate system specifies each point uniquely in a plane by a pair of numerical coordinates, which are the signed distances from the point to two fixed perpendicular directed lines, measured in the same unit of length. - + @@ -1482,7 +1482,7 @@ concept A concept is term that refers to a generalization of a set of attributes or entities. - + @@ -1490,7 +1490,7 @@ polar coordinate system A polar coordinate system is a two-dimensional coordinate system in which each point on a plane is determined by a distance from a fixed point and an angle from a fixed direction. - + @@ -1498,7 +1498,7 @@ positional identifier A positional description is a description of location using some system or frame of reference. - + @@ -1506,7 +1506,7 @@ cylindrical coordinate system A cylindrical coordinate system is a three-dimensional coordinate system that specifies point positions by the distance from a chosen reference axis, the direction from the axis relative to a chosen reference direction, and the distance from a chosen reference plane perpendicular to the axis. - + @@ -1514,7 +1514,7 @@ spherical coordinate system A spherical coordinate system is a coordinate system for three-dimensional space where the position of a point is specified by three numbers: the radial distance of that point from a fixed origin, its polar angle measured from a fixed zenith direction, and the azimuth angle of its orthogonal projection on a reference plane that passes through the origin and is orthogonal to the zenith, measured from a fixed reference direction on that plane. - + @@ -1522,7 +1522,7 @@ OWL ontology An OWL ontology is an ontology as specified by the W3C OWL specification. - + @@ -1530,7 +1530,7 @@ 3D cartesian coordinate A 3D cartesian coordinate is a coordinate that is composed of an x, y and z coordinate. - + @@ -1538,7 +1538,7 @@ objective An objective is a proposition that indicates a planned or anticipated outcome. - + @@ -1546,7 +1546,7 @@ purpose purpose is the reason for which something is done or created or for which something exists. - + @@ -1554,7 +1554,7 @@ belief A belief is a proposition that is believed to be true. - + @@ -1562,7 +1562,7 @@ number A number is a mathematical object used to count, label, and measure. - + @@ -1570,7 +1570,7 @@ variable A variable is a value that may change within the scope of a given problem or set of operations. - + @@ -1578,7 +1578,7 @@ equation An equation is a mathematical statement that asserts the equality of two expressions. - + @@ -1588,7 +1588,7 @@ Time intervals are specified as date/datetime ranges. the duration of my life; the duration of a surgical procedure, the moment of death time measurement is a measurement value of the duration of some interval of time or a particular instant of time (against some frame of reference). - + @@ -1596,7 +1596,7 @@ file A file is an information-bearing object that contains a physical embodiment of some information using a particular character encoding. - + @@ -1604,7 +1604,7 @@ x cartesian coordinate An x cartesian coordinate is the coordinate of an object onto the x-axis of a cartesian coordinate system. - + @@ -1612,7 +1612,7 @@ y cartesian coordinate An y cartesian coordinate is the coordinate of an object onto the y-axis of a cartesian coordinate system. - + @@ -1620,7 +1620,7 @@ z cartesian coordinate A z cartesian coordinate is the coordinate of an object onto the z-axis of a cartesian coordinate system. - + @@ -1628,7 +1628,7 @@ study group A study group is a group of individuals that are subjects in an observational or intervention study. - + @@ -1636,7 +1636,7 @@ time interval A time internval is a contiguous temporal region having some duration. - + @@ -1645,7 +1645,7 @@ A time instant is a temporal region which occurs instantaneously, e.g. having no duration. at this moment; the moment at which a finger is detached in an industrial accident; the moment at which a child is born; the moment of death - + @@ -1653,7 +1653,7 @@ table A table is a figure that consists of an ordered arrangement of columns and rows. - + @@ -1664,7 +1664,7 @@ scatter chart scatter diagram scatter graph - + @@ -1672,7 +1672,7 @@ year A year is a period of time taken by a planet to make one revolution around the sun. - + @@ -1680,7 +1680,7 @@ month A month is a period of time that divides the year. - + @@ -1688,7 +1688,7 @@ day A day is a period of 24 hours. - + @@ -1696,7 +1696,7 @@ century A century is a period of one hundred years. - + @@ -1704,7 +1704,7 @@ millenium A millenium is a period of 1000 years - + @@ -1712,7 +1712,7 @@ hour An hour is a period of 60 minutes. - + @@ -1720,7 +1720,7 @@ minute A minute is a period of 60 seconds. - + @@ -1728,7 +1728,7 @@ second A second (symbol: s) is the base unit of time in the International System of Units (SI) and is the second division of the hour by sixty, the first division by 60 being the minute. - + @@ -1736,7 +1736,7 @@ altitude Altitude is a distance above sea level. - + @@ -1744,7 +1744,7 @@ center of mass The center of mass (aka barycenter) is the weighted average location of all the mass in a body or group of bodies. - + @@ -1754,7 +1754,7 @@ A line graph is a statistical graph in which lines contains the evaluation of functions or individual points connected by line segments. Graph 1 in http://tinyurl.com/opwnvm line chart - + @@ -1763,7 +1763,7 @@ A bar graph is a statistical graph with rectangular bars of lengths proportional to that value that they represent. Graphs 3,4,5 in http://tinyurl.com/opwnvm - + @@ -1772,7 +1772,7 @@ A horizontal bar graph is a bar graph in which the rectangular bars are horizontally oriented in space. Graph 3 in http://tinyurl.com/opwnvm - + @@ -1781,7 +1781,7 @@ A vertical bar graph is a bar graph in which the rectangular bars are vertically oriented in space. Graph 4,5 in http://tinyurl.com/opwnvm - + @@ -1790,7 +1790,7 @@ A stacked bar graph is a bar graph in which each rectangular bar is partioned by the categorical value of each series of data. Graphs 6,7 in http://tinyurl.com/opwnvm - + @@ -1799,7 +1799,7 @@ A line-bar graph statistical graph that contains both lines and bars. Graph 8 in http://tinyurl.com/opwnvm - + @@ -1807,7 +1807,7 @@ figure part A figure part is a part of a figure. - + @@ -1818,7 +1818,7 @@ A plot is a part of a figure that corresponds to the spatial region between the set of axes. The square portion of the chart bounded by lines that overlap with the two axes in Graph 1 of http://tinyurl.com/opwnvm - + @@ -1830,7 +1830,7 @@ position along the line corresponds to a numeric or categorical value.The left vertical and bottom horizontal lines with tickmarks in Graph 1 http://tinyurl.com/opwnvm The value of a plotted geometric objects (e.g. point) can be obtained from the perpendicular projection of the position of the object onto the axis. Axis may also be associated with a textual description of what the values on the axis represents. - + @@ -1838,7 +1838,7 @@ Graph 1 http://tinyurl.com/opwnvm Cartesian coordinate axis A Cartesian coordinate axis is an axis whose behavior follows that of a Cartesian coordinate system. - + @@ -1847,20 +1847,20 @@ Graph 1 http://tinyurl.com/opwnvm + horizontal axis An x-axis is a Cartesian coordinate axis that is aligned with the horizon. In most figures, this axis represents categories, such as months, market segments, or other non-numeric data. The horizontal axis in http://tinyurl.com/opwnvm - horizontal axis - + y-axis - vertical axis A y-axis is a Cartesian coordinate axis that is spatially oriented perpendicular to the x-axis. - + vertical axis + @@ -1868,7 +1868,7 @@ Graph 1 http://tinyurl.com/opwnvm z-axis A z-axis is a Cartesian coordinate axis that is spatially oriented normal to the plane formed by the x- and y-axes. - + @@ -1879,7 +1879,7 @@ Graph 1 http://tinyurl.com/opwnvm A category axis is an axis in which the position along the line is partioned into categories. The horizontal axis corresponding to months of the year in graph 4 of http://tinyurl.com/opwnvm - + @@ -1890,7 +1890,7 @@ of http://tinyurl.com/opwnvm A primary category axis is a category axis that either defines the sole value range or holds the larger set of categorical values specified by the secondary category axis. The category axis that corresponds to years in Graph 1 of http://tinyurl.com/opwnvm - + @@ -1900,7 +1900,7 @@ http://tinyurl.com/opwnvm A secondary category axis is a category axis that defines a finer granular part (or subset) of the value range of the primary category axis. The category axis that corresponds to months in Graph 1 of http://tinyurl.com/opwnvm - + @@ -1911,7 +1911,7 @@ http://tinyurl.com/opwnvm A value axis is an axis in which the position along the line is partioned into numeric values. The value axis that ranges from 3.0 to 7.4 and corresponds to billions of dollars in Graph 1 of http://tinyurl.com/opwnvm - + @@ -1920,7 +1920,7 @@ billions of dollars in Graph 1 of http://tinyurl.com/opwnvm A left value axis is a value axis that is spatially positioned to the left of the plot area. The value axis that ranges from 3.0 to 7.4 and corresponds to billions of dollars in Graph 1 of http://tinyurl.com/opwnvm - + @@ -1928,7 +1928,7 @@ billions of dollars in Graph 1 of http://tinyurl.com/opwnvm right value axis A right value axis is a value axis that is spatially positioned to the right of the plot area. - + @@ -1936,7 +1936,7 @@ billions of dollars in Graph 1 of http://tinyurl.com/opwnvm scaled value axis A scaled value axis is a value axis in which the value range was subject to a mathematic transformation. - + @@ -1945,7 +1945,7 @@ billions of dollars in Graph 1 of http://tinyurl.com/opwnvm A linear value axis is a value axis that corresponds to a scaling factor of 1 of the value range. - + @@ -1953,7 +1953,7 @@ billions of dollars in Graph 1 of http://tinyurl.com/opwnvm logarithmic value axis A logarithmic value axis is a scaled value axis that corresponds to a scaling factor of the logarithm of the value range. - + @@ -1962,7 +1962,7 @@ billions of dollars in Graph 1 of http://tinyurl.com/opwnvm A data series is a data set composed of related values displayed in a statistical graph. Example: The two series that correspond to "Seasonally adjusted" and "Trend" are composed of the seasonally adjusted value of permits in each month and values from a trend derived from some mathematical tranformation across those values, respectively, in Graph 1 of http://tinyurl.com/opwnvm - + @@ -1970,7 +1970,7 @@ billions of dollars in Graph 1 of http://tinyurl.com/opwnvm data point A data point is a point that which corresponds to the projection of the values of measurement data against the axes of a statistical graph. - + @@ -1978,7 +1978,7 @@ billions of dollars in Graph 1 of http://tinyurl.com/opwnvm global maximal stationary point A global maximum stationary point is a data point that corresponds to a measurement value is larger than that of all other plotted datapoints. - + @@ -1986,7 +1986,7 @@ billions of dollars in Graph 1 of http://tinyurl.com/opwnvm global minimal stationary point A global minimum data point is a data point that corresponds to a measurement value is smaller than that of all other plotted datapoints. - + @@ -1996,7 +1996,7 @@ billions of dollars in Graph 1 of http://tinyurl.com/opwnvm A legend is a part of a figure that associates textual descriptions with symbols pertaining to plotted entities. The colored line segments and the adjacent textual descriptions in Graph 1 of http://tinyurl.com/opwnvm - + @@ -2004,7 +2004,7 @@ Graph 1 of http://tinyurl.com/opwnvm primary title A primary title is a title that should be first used in describing some entity. - + @@ -2013,7 +2013,7 @@ Graph 1 of http://tinyurl.com/opwnvm A secondary title is a title of lesser importance that should be used after the first title in describing some entity. subtitle, alternative title - + @@ -2021,7 +2021,7 @@ Graph 1 of http://tinyurl.com/opwnvm scientific data scientific data is data obtained from some scientific procedure. - + @@ -2030,7 +2030,7 @@ Graph 1 of http://tinyurl.com/opwnvm "Total value of permits increased slightly in December" in Graph 1 of http://tinyurl.com/opwnvm A primary graph title is a primary title that describes a statistical graph. - + @@ -2038,7 +2038,7 @@ Graph 1 of http://tinyurl.com/opwnvm secondary graph title A secondary graph title is a secondary title that describes a statistical graph. - + @@ -2046,7 +2046,7 @@ Graph 1 of http://tinyurl.com/opwnvm phrase A phrase is a group of words functioning as a single unit in the syntax of a sentence. - + @@ -2054,7 +2054,7 @@ Graph 1 of http://tinyurl.com/opwnvm clause A clause consists of a subject and a predicate. - + @@ -2062,7 +2062,7 @@ Graph 1 of http://tinyurl.com/opwnvm polygon vertex A polygon vertex is a terminal point at which two polygon edges meet and are part of a polygon. - + @@ -2070,7 +2070,7 @@ Graph 1 of http://tinyurl.com/opwnvm polygon edge A polygon edge is a line segment joining two polygon vertices. - + @@ -2078,7 +2078,7 @@ Graph 1 of http://tinyurl.com/opwnvm polyhedral skeleton A polyhedral skeleton is a collection of polygon edges. - + @@ -2086,7 +2086,7 @@ Graph 1 of http://tinyurl.com/opwnvm polygonal face A polygonal face is a polygon bounded by a circuit of polygon edges, and includes the flat (plane) region inside the boundary. - + @@ -2094,7 +2094,7 @@ Graph 1 of http://tinyurl.com/opwnvm polyhedral surface A polyhedral surface is composed of polygonal faces. - + @@ -2102,16 +2102,16 @@ Graph 1 of http://tinyurl.com/opwnvm polygon A polygon is a planar entity that is bounded by a closed path or circuit, composed of a finite connected sequence3 of straight line segments. - + geometric entity - A geometric entity is an information content entity that pertains to the structure and topology of a space. geometry+ - + A geometric entity is an information content entity that pertains to the structure and topology of a space. + @@ -2119,7 +2119,7 @@ Graph 1 of http://tinyurl.com/opwnvm point A point is a geometric entity that is located in a zero-dimensional spatial region and whose position is defined by its coordinates in some coordinate system. - + @@ -2128,7 +2128,7 @@ Graph 1 of http://tinyurl.com/opwnvm An endpoint is a terminal point that is the last of an ordered pair of points. - + @@ -2137,7 +2137,7 @@ pair of points. A start point is a terminal point which is the first of an ordered pair of points. - + @@ -2145,7 +2145,7 @@ pair of points. model A model is a representation of some thing. - + @@ -2153,7 +2153,7 @@ pair of points. line A line is curve that extends in a single dimension (e.g. straight line; exhibits no curvature), and is composed of at least two fully connected points. - + @@ -2161,7 +2161,7 @@ pair of points. line segment A line segment is a line and a part of a curve that is (inclusively) bounded by two terminal points. - + @@ -2169,7 +2169,7 @@ pair of points. tick mark A tick mark is a line segment that is spatially positioned perpendicular to the axis of a statistical graph and indicates the position of a specific numeric value (which may be indicated by an adjacent value label) on a value axis, or is one of a pair of tick marks that delineates the boundary of a categorical value (which may be indicated by an adjacent category label) on the categorical axis. - + @@ -2177,7 +2177,7 @@ pair of points. major tick mark A major tick mark is a tick mark that indicates the position of a specific numeric value and is adjacent to its value label on the value axis, or is one of a pair of tick marks that delineates the boundary of a categorical value indicated by an adjacent category label on the categorical axis. - + @@ -2185,7 +2185,7 @@ pair of points. minor tick mark A minor tick mark is a tick mark that indicates the position of a specific numeric value but has no adjacent value label, or is one of a pair of tick marks that delineates the boundary of a categorical value but has no adjacent category label on the categorical axis. - + @@ -2193,7 +2193,7 @@ pair of points. ray A ray is a line which that is bounded by a startpoint and extends outwards infinitely along one dimension. - + @@ -2201,7 +2201,7 @@ pair of points. quadrilateral A quadrilateral is a polygon with composed of four points and four line segments, in which each point is fully connected to two other points. - + @@ -2209,7 +2209,7 @@ pair of points. rectangle A rectangle is a quadrilateral in which one pair of line segments are parallel and the other pair are perpendicular to the first pair. - + @@ -2217,7 +2217,7 @@ pair of points. bar A bar is a rectangle that is located in the plot of a statistical graph in which its length is proportional to the values that it represents. - + @@ -2225,7 +2225,7 @@ pair of points. triangle A triangle is a polygon composed of three points and three line segments, in which each point is fully connected to another point along through the line segment. - + @@ -2234,7 +2234,7 @@ pair of points. A directed line segment is a line segment that is contained by an ordered pair of endpoints (a start point and an endpoint). - + @@ -2242,7 +2242,7 @@ of endpoints (a start point and an endpoint). arrowed line segment An arrowed line is a directed line segment in which one or both endpoints is tangentially part of a triangle that bisects the line. - + @@ -2251,7 +2251,7 @@ of endpoints (a start point and an endpoint). A single arrowed line is directed line in which the endpoint is tangentially part of a triangle that bisects the line. - + @@ -2259,7 +2259,7 @@ of endpoints (a start point and an endpoint). double arrowed line segment A double arrowed line is an arrowed line in which both terminal points are tangentially part of different triangles that bisect the line. - + @@ -2267,7 +2267,7 @@ of endpoints (a start point and an endpoint). horizontal line A horizontal line is a line that is positionally oriented with the horizon. - + @@ -2275,7 +2275,7 @@ of endpoints (a start point and an endpoint). vertical line A vertical line is a line that is positionally oriented perpendicular to the horizon. - + @@ -2283,7 +2283,7 @@ of endpoints (a start point and an endpoint). trend line A trend line is a line, line segment or ray that is part of a statistical graph which indicates a statistical or visual direction across categorical or value data. - + @@ -2291,7 +2291,7 @@ of endpoints (a start point and an endpoint). increasing line An increasing line is a line segment in which the startpoint and endpoint are ordered along one dimension and the difference of values in a second dimension is positive. - + @@ -2299,7 +2299,7 @@ of endpoints (a start point and an endpoint). decreasing line An decreasing line is a line segment in which the startpoint and endpoint are ordered along one dimension and the difference of values in a second dimension is negative. - + @@ -2307,7 +2307,7 @@ of endpoints (a start point and an endpoint). plateau line An plateau line is a line segment in which the startpoint and endpoint are ordered along one dimension and the difference of values in a second dimension is zero. - + @@ -2315,7 +2315,7 @@ of endpoints (a start point and an endpoint). drop line A drop line is a statistical graph line that vertically or horizontally connects a data series line with a value axis in a statistical graph. - + @@ -2323,7 +2323,7 @@ of endpoints (a start point and an endpoint). terminal point A terminal point is a point that defines the finite extension of a line. - + @@ -2331,7 +2331,7 @@ of endpoints (a start point and an endpoint). surface normal A surface normal is a vector that is perpendicular to a flat surface. - + @@ -2339,7 +2339,7 @@ of endpoints (a start point and an endpoint). positionally oriented line A positionally oriented line is a line that is positioned against some axis of reference. - + @@ -2347,7 +2347,7 @@ of endpoints (a start point and an endpoint). statistical graph line A statistical graph line is a line used in a statistical graph to communicate some trend or feature of the embedded data. - + @@ -2355,7 +2355,7 @@ of endpoints (a start point and an endpoint). infinite line An infinite line is a line that extends outwards in both directions of a single dimensional and is not bounded by terminal points. - + @@ -2363,7 +2363,7 @@ of endpoints (a start point and an endpoint). vector A vector is a line which that is bounded by a startpoint and extends outwards along one dimension. - + @@ -2371,7 +2371,7 @@ of endpoints (a start point and an endpoint). vertex normal A vertext normal is the normalized average of the surface normals of the faces that contain that vertex. - + @@ -2380,7 +2380,7 @@ of endpoints (a start point and an endpoint). A polyline is a connected sequence of line segments. polygonal chain, polygonal curve, polygonal path, piecewise linear curve - + @@ -2389,7 +2389,7 @@ of endpoints (a start point and an endpoint). A collection of points is a geometric entity that contains a non-zero set of geometric points. - + @@ -2397,7 +2397,7 @@ of endpoints (a start point and an endpoint). molecular orbitral A molecular orbital (or MO) is a mathematical function describing the wave-like behavior of an electron in a molecule. - + @@ -2405,7 +2405,7 @@ of endpoints (a start point and an endpoint). diffusion equation A diffusion equation describes density fluctuations in a material undergoing diffusion. - + @@ -2413,7 +2413,7 @@ of endpoints (a start point and an endpoint). movement equation A movement equation describes the displacement of an object in space over time. - + @@ -2421,7 +2421,7 @@ of endpoints (a start point and an endpoint). ordinary differential equation An ordinary differential equation (ODE) is a differential equation in which the unknown function (also known as the dependent variable) is a function of a single independent variable. - + @@ -2429,7 +2429,7 @@ of endpoints (a start point and an endpoint). partial differential equation A partial differential equation (PDE) is a differential equation in which the unknown function is a function of multiple independent variables and the equation involves its partial derivatives. - + @@ -2437,7 +2437,7 @@ of endpoints (a start point and an endpoint). differential equation A differential equation is a mathematical equation for an unknown function of one or several variables that relates the values of the function itself and its derivatives of various orders. - + @@ -2445,7 +2445,7 @@ of endpoints (a start point and an endpoint). idea An idea is a proposition about some object of conceptual thought. - + @@ -2453,7 +2453,7 @@ of endpoints (a start point and an endpoint). structure structure is the specification that refers to the composition and arrangement of parts of an object. - + @@ -2461,7 +2461,7 @@ of endpoints (a start point and an endpoint). computational entity A computational entity is an information content entity operated on using some computational system. - + @@ -2469,7 +2469,7 @@ of endpoints (a start point and an endpoint). curve A curve is a geometric entity that may be located in n-dimensional spatial region whose extension may be n-dimensional, is composed of at least two fully connected points and does not intersect itself. - + @@ -2477,7 +2477,7 @@ of endpoints (a start point and an endpoint). representation A representation is a entity that in some way represents another entity (or attribute thereof). - + @@ -2486,7 +2486,7 @@ of endpoints (a start point and an endpoint). A ordinal position is a number that designates the position of an entity from the first entity in an ordered sequence of entities. offset - + @@ -2494,7 +2494,7 @@ of endpoints (a start point and an endpoint). collection A collection is a set for which there exists at least one member, although any member need not to exist at any point in the collection's existence. - + @@ -2502,7 +2502,7 @@ of endpoints (a start point and an endpoint). empty set An empty set is a set for which there are exactly 0 members. - + @@ -2510,7 +2510,7 @@ of endpoints (a start point and an endpoint). standard A standard is a socially-agreed upon specification. - + @@ -2518,16 +2518,16 @@ of endpoints (a start point and an endpoint). regulatory authority A regulatory authority is an organization responsible for exercising regulatory or supervisory capacity in some area of human activity. - + collective - group A collective is a group of entities that share or are motivated by at least one common issue or interest, or work together on a specific project(s) to achieve a common objective. - + group + @@ -2535,7 +2535,7 @@ of endpoints (a start point and an endpoint). formal specification A formal specification is a mathematical description of software or hardware that may be used to develop an implementation. - + @@ -2543,7 +2543,7 @@ of endpoints (a start point and an endpoint). RDFS ontology An RDFS ontology is an ontology that conforms to the syntax and semantics of the Resource Description Framework Schema (RDFS). - + @@ -2551,7 +2551,7 @@ of endpoints (a start point and an endpoint). OBO ontology An OBO ontology is an ontology document as specified by the Open Biological Ontology community. - + @@ -2559,7 +2559,7 @@ of endpoints (a start point and an endpoint). chemical structure chemical structure is the structure of a chemical entity in terms of its molecular geometry and electronic structure. - + @@ -2568,7 +2568,7 @@ of endpoints (a start point and an endpoint). molecular geometry molecular structure is the spatial arrangement of atoms in a molecule and the chemical bonds that hold the atoms together. - + @@ -2576,7 +2576,7 @@ of endpoints (a start point and an endpoint). probability measure A probability measure is quantity of how likely it is that some event will occur. - + @@ -2585,7 +2585,7 @@ of endpoints (a start point and an endpoint). A process model is a representation of some process. - + @@ -2593,7 +2593,7 @@ of endpoints (a start point and an endpoint). object model An object model is a representation of an object. - + @@ -2601,7 +2601,7 @@ of endpoints (a start point and an endpoint). textual entity A textual entity is language entity that is manifested as one or more distinct characters. - + @@ -2609,7 +2609,7 @@ of endpoints (a start point and an endpoint). version label A version label is a label for a particular form or variation of an earlier or original type. - + @@ -2618,7 +2618,7 @@ of endpoints (a start point and an endpoint). A software version label is a version label for a piece of software. major.minor[.build[.revision]] - + @@ -2626,7 +2626,7 @@ of endpoints (a start point and an endpoint). start time A start time is a time instant pertaining to the time at which a process begins. - + @@ -2634,7 +2634,7 @@ of endpoints (a start point and an endpoint). end time An end time is a time instant pertaining to the time at which a process ends. - + @@ -2642,7 +2642,7 @@ of endpoints (a start point and an endpoint). unique identifier A unique identifier is an identifier that uniquely identifies some thing. - + @@ -2650,7 +2650,7 @@ of endpoints (a start point and an endpoint). justification A justification is a proposition that defends, explains or excuses some argument. - + @@ -2658,7 +2658,7 @@ of endpoints (a start point and an endpoint). academic department An academic department is a division of a university or school faculty devoted to a particular academic discipline. - + @@ -2666,7 +2666,7 @@ of endpoints (a start point and an endpoint). institute institute is a society or organization having a object or common factor, and is normally applied to those with a scientific, educational, or social objective. - + @@ -2674,7 +2674,7 @@ of endpoints (a start point and an endpoint). corporation A corporation is an organization that is granted a charter recognizing it as a separate legal entity. - + @@ -2682,7 +2682,7 @@ of endpoints (a start point and an endpoint). design A specification of an object, manifested by an agent, intended to accomplish goals, in a particular environment, using a set of primitive components, satisfying a set of requirements, subject to constraints. - + @@ -2690,7 +2690,7 @@ of endpoints (a start point and an endpoint). chemical identifier A chemical identifier is an identifier for a chemical entity - + @@ -2698,7 +2698,7 @@ of endpoints (a start point and an endpoint). record identifier A record identifier is an identifier for a database entry. - + @@ -2706,7 +2706,7 @@ of endpoints (a start point and an endpoint). physical entity identifier A physical entity identifier is an identifier for a physical entity. - + @@ -2714,7 +2714,7 @@ of endpoints (a start point and an endpoint). informational entity identifier An informational entity identifier is an identifier for an informational entity. - + @@ -2722,7 +2722,7 @@ of endpoints (a start point and an endpoint). molecular identifier A molecular identifier is an identifier for a molecular entity. - + @@ -2730,7 +2730,7 @@ of endpoints (a start point and an endpoint). curve segment A curve segment is a part of a curve that consists of at least three points. - + @@ -2738,7 +2738,7 @@ of endpoints (a start point and an endpoint). stationary point A stationary point is a point that is part of a curve in which the derivative at that point is zero, and hence its value is at least a local maximum or minimum. - + @@ -2746,7 +2746,7 @@ of endpoints (a start point and an endpoint). local maximum stationary point A local maximum stationary point is a point that has a higher value in some axis than adjacent points. - + @@ -2754,7 +2754,7 @@ of endpoints (a start point and an endpoint). local minimum stationary point A local minimum stationary point is a point that has a lower value in some axis than adjacent points. - + @@ -2762,7 +2762,7 @@ of endpoints (a start point and an endpoint). database A database is a set of tables. - + @@ -2770,7 +2770,7 @@ of endpoints (a start point and an endpoint). row A row represents a single, implicitly structured data item in a table. - + @@ -2778,7 +2778,7 @@ of endpoints (a start point and an endpoint). column A column is a vertical sequence of cells in a cellular automata. - + @@ -2786,7 +2786,7 @@ of endpoints (a start point and an endpoint). database table A database table is a set of named columns with zero or more rows composed of cells that contain column values and is part of a database. - + @@ -2794,7 +2794,7 @@ of endpoints (a start point and an endpoint). cell (informational) The minimal unit of a cellular automaton that can change state and has an associated behavior. - + @@ -2803,7 +2803,7 @@ of endpoints (a start point and an endpoint). A database entry is a single, implicitly structured data item in a table. database record - + @@ -2811,7 +2811,7 @@ of endpoints (a start point and an endpoint). database column A database collumn is a column in a database table. - + @@ -2819,7 +2819,7 @@ of endpoints (a start point and an endpoint). unique cell A unique cell is a cell that contains a unique value in the cellular automaton. - + @@ -2827,7 +2827,7 @@ of endpoints (a start point and an endpoint). referencing cell A referenceing cell is a cell of a cellular automata that refers to another cell. - + @@ -2835,7 +2835,7 @@ of endpoints (a start point and an endpoint). referent cell A referent cell is a cell that is the referent of some function or pointer. - + @@ -2843,7 +2843,7 @@ of endpoints (a start point and an endpoint). database key A database key is an informational entity whose value is constructed from one or more database columns. - + @@ -2851,7 +2851,7 @@ of endpoints (a start point and an endpoint). primary database key A primary database key is a database key that identifies every row of a table. - + @@ -2859,7 +2859,7 @@ of endpoints (a start point and an endpoint). foreign database key A foreign database key is a database key that refers to a key in some table. - + @@ -2868,7 +2868,7 @@ of endpoints (a start point and an endpoint). A p-value or probability value is the probability of obtaining a test statistic at least as extreme as the one that was actually observed, assuming that the null hypothesis is true p-value - + @@ -2876,7 +2876,7 @@ of endpoints (a start point and an endpoint). street name A street name is the token given to identify a particular street. - + @@ -2884,7 +2884,7 @@ of endpoints (a start point and an endpoint). postal code A postal code is a geographic coordinate composed of a series of letters and/or digits appended to a postal address for the purpose of sorting mail. - + @@ -2892,7 +2892,7 @@ of endpoints (a start point and an endpoint). apartment number An apartment number is the number assigned to identify an apartment in a building of apartments. - + @@ -2900,7 +2900,7 @@ of endpoints (a start point and an endpoint). uncertainty value The uncertainty value (margin of error) of a measurement is a range of values likely to enclose the true value. - + @@ -2908,7 +2908,7 @@ of endpoints (a start point and an endpoint). standard deviation A standard deviation (represented by the symbol σ) is the quantity of variation from the average (mean, or expected value). - + @@ -2916,7 +2916,7 @@ of endpoints (a start point and an endpoint). versioned record A versioned record is a record for which there exists another variant based that was derived via modification of the facts. - + @@ -2924,7 +2924,7 @@ of endpoints (a start point and an endpoint). answer An answer is a reply to a question. - + @@ -2932,7 +2932,7 @@ of endpoints (a start point and an endpoint). verbal language entity A verbal language entity is a language entity that is manifested through sound. - + @@ -2940,7 +2940,7 @@ of endpoints (a start point and an endpoint). page number A page number is the count of a page in a sequence of pages. - + @@ -2948,7 +2948,7 @@ of endpoints (a start point and an endpoint). linear position A linear position is the position of some object against a linear positioning system. - + @@ -2956,7 +2956,7 @@ of endpoints (a start point and an endpoint). sequence element position A sequence element position is the position of an element of a linear sequence. - + @@ -2965,7 +2965,7 @@ of endpoints (a start point and an endpoint). A sequence start position is the start position for a sequence of characters. - + @@ -2974,7 +2974,7 @@ of endpoints (a start point and an endpoint). A sequence end position is the position of the last character in a sequence of characters relative to some linear frame of reference. - + @@ -2982,7 +2982,7 @@ of endpoints (a start point and an endpoint). count The number of elements of a finite set of objects. - + @@ -2991,7 +2991,7 @@ of endpoints (a start point and an endpoint). A Uniform Resource Locator or Universal Resource Locator (URL) is a specific character string that constitutes a reference to an Internet resource. Uniform Resource Locator - + @@ -2999,7 +2999,7 @@ of endpoints (a start point and an endpoint). association An assocation is a relationship between two or more entities derived by some informational analysis. - + @@ -3007,7 +3007,7 @@ of endpoints (a start point and an endpoint). statistical association A statistical association is any relationship between two measured quantities that renders them statistically dependent. - + @@ -3015,7 +3015,7 @@ of endpoints (a start point and an endpoint). top value axis A top value axis is a value axis that is spatially positioned to the top of the plot area. - + @@ -3023,7 +3023,7 @@ of endpoints (a start point and an endpoint). bottom value axis A bottom value axis is a value axis that is spatially positioned to the bottom of the plot area. - + @@ -3031,7 +3031,7 @@ of endpoints (a start point and an endpoint). chart A chart is a figure that displays the relationship among tabular numeric data, functions or some kinds of qualitative structures. - + @@ -3039,7 +3039,7 @@ of endpoints (a start point and an endpoint). map A map is a a visual representation of an area that depicts the relationship between elements of that space. - + @@ -3047,7 +3047,7 @@ of endpoints (a start point and an endpoint). heatmap A heatmap is a graphical representation of data where the individual values contained in a matrix are represented as colors. - + @@ -3055,7 +3055,7 @@ of endpoints (a start point and an endpoint). steamgraph A steamgraph is a multi-line stacked graph that yields the appearance of continuous y-values across the x-axis. - + @@ -3063,7 +3063,7 @@ of endpoints (a start point and an endpoint). boxplot A boxplot (box-and-whisker diagram) is a convenient way of graphically depicting groups of numerical data through their five-number summaries: the smallest observation (sample minimum), lower quartile (Q1), median (Q2), upper quartile (Q3), and largest observation (sample maximum). - + @@ -3071,7 +3071,7 @@ of endpoints (a start point and an endpoint). geographic heatmap A geographic heatmap is a graphical representation of data over a geographic region where individual values are represented as colors. - + @@ -3079,7 +3079,7 @@ of endpoints (a start point and an endpoint). histogram A histogram is a graphical representation of data which consists of tabular frequencies, shown as adjacent rectangles, over discrete intervals (bins) , with an area equal to the frequency of the observations in the interval. - + @@ -3087,7 +3087,7 @@ of endpoints (a start point and an endpoint). measurement scale A measurement scale is a functional specification that specifies an allowed range of categories or values. - + @@ -3095,7 +3095,7 @@ of endpoints (a start point and an endpoint). nomimal scale A nominal scale of measurement only specifies a limited set of categories. - + @@ -3103,7 +3103,7 @@ of endpoints (a start point and an endpoint). binary scale A binary scale is a measurement scale that specifies a choice between two values. - + @@ -3111,7 +3111,7 @@ of endpoints (a start point and an endpoint). numeric scale A numeric scale of measurement is one that only specifies numeric values. - + @@ -3119,7 +3119,7 @@ of endpoints (a start point and an endpoint). decimal scale A decimal scale of measurement is one that only specifies decimal values. - + @@ -3127,7 +3127,7 @@ of endpoints (a start point and an endpoint). integer scale An integer scale of measurement is one that only specifies integer values. - + @@ -3135,7 +3135,7 @@ of endpoints (a start point and an endpoint). independent variable An independent variable is a variable that may take on different values independent of other elements in a system. - + @@ -3143,7 +3143,7 @@ of endpoints (a start point and an endpoint). dependent variable A dependent variable is one whose value changes as a consequence of changes in other values in the system. - + @@ -3151,7 +3151,7 @@ of endpoints (a start point and an endpoint). Gantt chart A Gantt chart is a bar chart that illustrates a project schedule. - + @@ -3159,7 +3159,7 @@ of endpoints (a start point and an endpoint). correlation A correlation is a statistical relationship involving dependence between two random variables or datasets. - + @@ -3167,7 +3167,7 @@ of endpoints (a start point and an endpoint). television program A television program is a audiovisual media that is produced and broadcast using a television. - + @@ -3175,7 +3175,7 @@ of endpoints (a start point and an endpoint). pie chart A pie chart is a circular chart divided into sectors each of whose length is proportional to the quantity it represents. - + @@ -3183,7 +3183,7 @@ of endpoints (a start point and an endpoint). matrix chart A matrix chart summarizes a multidimensional data set in a grid. - + @@ -3191,7 +3191,7 @@ of endpoints (a start point and an endpoint). network diagram A network diagram consists of a set of vertices connected by edges. - + @@ -3199,7 +3199,7 @@ of endpoints (a start point and an endpoint). block histogram A block histogram contains an x-axis that is divided into bins which correspond to value ranges. Each item in the data set is drawn as a rectangular block, and the blocks are piled into the bins to show how many values in each range. - + @@ -3207,7 +3207,7 @@ of endpoints (a start point and an endpoint). bubble chart A bubble chart contains circles whose area corresponds to a value. - + @@ -3215,7 +3215,7 @@ of endpoints (a start point and an endpoint). stack graph A stack graph is a statistical graph which presents multiple series in which the distance between one series and another indicates the relative contribution to the total for any x-value. - + @@ -3223,7 +3223,7 @@ of endpoints (a start point and an endpoint). treemap A treemap is a chart that fully partitions the area into a set of rectangles whose area represents its relative value. - + @@ -3231,7 +3231,7 @@ of endpoints (a start point and an endpoint). word tree A word tree is a chart that links phrases with contexts through a tree-like branching structure. - + @@ -3239,7 +3239,7 @@ of endpoints (a start point and an endpoint). textual chart A textual chart is a chart containing text. - + @@ -3248,7 +3248,7 @@ of endpoints (a start point and an endpoint). A tag cloud is a visualization of word frequencies. word cloud - + @@ -3256,7 +3256,7 @@ of endpoints (a start point and an endpoint). phrase net diagram A phrase net diagram illustrates the relationship between different words used in a text. - + @@ -3264,7 +3264,7 @@ of endpoints (a start point and an endpoint). mereological chart A mereological chart is a chart that illustrates the parts in the context of the whole. - + @@ -3272,7 +3272,7 @@ of endpoints (a start point and an endpoint). numeric label A numeric label is a number used as a label. - + @@ -3280,7 +3280,7 @@ of endpoints (a start point and an endpoint). start position A start position is the proximal position of an object relative to an origin in a linear system. - + @@ -3288,7 +3288,7 @@ of endpoints (a start point and an endpoint). interval An interval is a set of real numbers that includes all numbers between any two numbers in the set. - + @@ -3296,7 +3296,7 @@ of endpoints (a start point and an endpoint). tree diagram A tree diagram is a hierarchical network diagram in which a root vertex is connected to one or more other vertices through a directed edge, which in turn may be connected to other vertices. - + @@ -3304,7 +3304,7 @@ of endpoints (a start point and an endpoint). flowchart A flowchart is a diagram that represents an algorithm or process, showing the steps as boxes of various kinds, and their order by connecting these with arrows. - + @@ -3312,7 +3312,7 @@ of endpoints (a start point and an endpoint). venn diagram A Venn diagram is a chart that illustrates all possible logical relations between a finite collection of sets as overlapping circles. - + @@ -3320,7 +3320,7 @@ of endpoints (a start point and an endpoint). dendrogram A dendrogram is a tree diagram used to illustrate the arrangement of the clusters produced by hierarchical clustering. - + @@ -3328,16 +3328,16 @@ of endpoints (a start point and an endpoint). default parameter A default parameter is a parameter which has a default value. - + end position - stop position An end position is the distal position of an object relative to an origin in a linear system. - + stop position + @@ -3345,7 +3345,7 @@ of endpoints (a start point and an endpoint). standard operating procedure A standard operating procedure is a specification approved for use in specific environments. - + @@ -3353,7 +3353,7 @@ of endpoints (a start point and an endpoint). syllable A syllable is a verbal entity of language having one vowel sound, with or without surrounding consonants, forming the whole or a part of a word. - + @@ -3361,7 +3361,7 @@ of endpoints (a start point and an endpoint). consonant A consonant is a verbal entity of language that is articulated with complete or partial closure of the vocal tract. - + @@ -3369,7 +3369,7 @@ of endpoints (a start point and an endpoint). vowel A vowel is a verbal entity of language that is pronounced with an open vocal tract so that there is no build-up of air pressure at any point above the glottis. - + @@ -3377,7 +3377,7 @@ of endpoints (a start point and an endpoint). sign language A sign language (also signed language) is a language that involves manual communication and body language to convey meaning. This can involve simultaneously combining hand shapes, orientation and movement of the hands, arms or body, and facial expressions to fluidly express a speaker's thoughts. - + @@ -3385,7 +3385,7 @@ of endpoints (a start point and an endpoint). verbal language A verbal language is a language that uses sounds to communicate. - + @@ -3393,7 +3393,7 @@ of endpoints (a start point and an endpoint). written language written language is a language that is communicated through a writing system. - + @@ -3401,7 +3401,7 @@ of endpoints (a start point and an endpoint). gene-disease association A gene-disease association is an association between a gene and a disease. - + @@ -3409,7 +3409,7 @@ of endpoints (a start point and an endpoint). sequence assembly A sequence assembly is a sequence that is produced as by the alignment of two or more sequences. - + @@ -3417,7 +3417,7 @@ of endpoints (a start point and an endpoint). chemical-disease association A chemical-disease association is an association between a chemical and a disease. - + @@ -3425,7 +3425,7 @@ of endpoints (a start point and an endpoint). diagnostic opinion A diagnostic opinion is an opinion resulting from a medical diagnostic procedure. - + @@ -3433,7 +3433,7 @@ of endpoints (a start point and an endpoint). opinion An opinion is a belief that is the result of emotion or interpretation of facts. - + @@ -3441,7 +3441,7 @@ of endpoints (a start point and an endpoint). age age is the length of time that a person has lived or a thing has existed. - + @@ -3449,7 +3449,7 @@ of endpoints (a start point and an endpoint). ethnic group An ethnic group is a group of people whose members identify with each other through a common heritage, consisting of a common culture, including a shared language or dialect. - + @@ -3457,7 +3457,7 @@ of endpoints (a start point and an endpoint). syndrome A syndrome is composed of a set of several clinically recognizable features, signs (observed by someone other than the patient), symptoms (reported by the patient), phenomena or characteristics that often occur together. - + @@ -3465,7 +3465,7 @@ of endpoints (a start point and an endpoint). ratio A ratio is a relationship between two numbers of the same kind expressed arithmetically as a dimensionless quotient of the two which explicitly indicates how many times the first number contains the second. - + @@ -3473,7 +3473,7 @@ of endpoints (a start point and an endpoint). dose A dose is the quantity of a chemical substance administered to a biological system. - + @@ -3481,7 +3481,7 @@ of endpoints (a start point and an endpoint). effective dose effective dose is the amount of a substance required to produce an effect on a predefined percentage of a population. - + @@ -3489,7 +3489,7 @@ of endpoints (a start point and an endpoint). expected value An expected value (or e-value) is the weighted average of all possible values that a random variable can take on. - + @@ -3497,7 +3497,7 @@ of endpoints (a start point and an endpoint). prognosis A prognosis is a proposition about the likely course of a disease, the chance of recovery or recurrence. - + @@ -3505,7 +3505,7 @@ of endpoints (a start point and an endpoint). report A report is a textual document made that present focused, salient content to a specific audience. - + @@ -3513,7 +3513,7 @@ of endpoints (a start point and an endpoint). medical health record A medical health record is a record of a single patient's medical history. - + @@ -3521,7 +3521,7 @@ of endpoints (a start point and an endpoint). medical report A medical report is a report prepared by a health care practioner about test outcomes or health status of an individual. - + @@ -3529,7 +3529,7 @@ of endpoints (a start point and an endpoint). peer reviewed article A peer reviewed article is an article that has undergone peer-review and deemed acceptable for publication. - + @@ -3537,7 +3537,7 @@ of endpoints (a start point and an endpoint). major version number A major version number is a version of a software that exhibits a significant change in functionalilty from a prior version. - + @@ -3545,7 +3545,7 @@ of endpoints (a start point and an endpoint). minor version number A minor version number is a version of a software that exhibits minor features or significant fix from a prior version. - + @@ -3553,7 +3553,7 @@ of endpoints (a start point and an endpoint). revision number A revision number is a version of a software in which bugs have been fixed from a prior version. - + @@ -3561,16 +3561,16 @@ of endpoints (a start point and an endpoint). morpheme A morpheme is the smallest semantically meaningful unit in a language. - + study design - study protocol A study design is a protocol for the proper execution of a study which normally requires a carefullly crafted research question or hypothesis and at least one variable under observation and observed values for that variable. - + study protocol + @@ -3578,7 +3578,7 @@ of endpoints (a start point and an endpoint). recipe A recipe is a set of instructions that describe how to prepare or make something. - + @@ -3586,7 +3586,7 @@ of endpoints (a start point and an endpoint). experimental protocol An experimental protocol is an action specification with respect to the design and implementation of experiments. In addition to providing a detailed set of procedures and lists of required equipment and instruments, experimental protocols often include information on safety precautions, the calculation of results and reporting standards, including statistical analysis and rules for predefining and documenting excluded data to avoid bias. - + @@ -3594,16 +3594,16 @@ of endpoints (a start point and an endpoint). reason A reason is a justification that specifies the motive for an action or a determination. - + character position - The ordinal position of a character in a sequence of characters. character offset - + The ordinal position of a character in a sequence of characters. + @@ -3611,7 +3611,7 @@ of endpoints (a start point and an endpoint). word start position The position of the first character in a word as an offset from the first character of the text in which it is found. - + @@ -3619,7 +3619,7 @@ of endpoints (a start point and an endpoint). word end position word end position is the position of the last character in a word as an offset from the first character of the text in which it is found. - + @@ -3627,7 +3627,7 @@ of endpoints (a start point and an endpoint). population A population is all the organisms that both belong to the same group or species and live in the same geographical area. - + @@ -3635,7 +3635,7 @@ of endpoints (a start point and an endpoint). human population A human population refers to a collection of human beings. - + @@ -3643,7 +3643,7 @@ of endpoints (a start point and an endpoint). family A group of people affiliated by consanguinity, affinity, or co-residence. - + @@ -3651,7 +3651,7 @@ of endpoints (a start point and an endpoint). community A community is a sizeable social unit that shares common values. - + @@ -3659,7 +3659,7 @@ of endpoints (a start point and an endpoint). speculation speculation is an opinion based on incomplete evidence. - + @@ -3667,7 +3667,7 @@ of endpoints (a start point and an endpoint). control group A control group is a group of individuals that are not subject to an intervention of interest, but rather serve as a baseline to compare the outcomes in the intervention group. - + @@ -3675,17 +3675,17 @@ of endpoints (a start point and an endpoint). intervention group An intervention group is a group of individuals that are subject to an intervention. - + control variable - extraneous variable controlled variable + extraneous variable A control variable that is believed to alter the dependent or independent variables, but may not actually be the focus of the experiment. So that variable will be kept constant or monitored to try to minimise its effect on the experiment. - + @@ -3693,7 +3693,7 @@ of endpoints (a start point and an endpoint). text span start position text span start position is the position (offset) of the first character of a text span in relation the text it is from. - + @@ -3701,16 +3701,16 @@ of endpoints (a start point and an endpoint). text span end position text span end position is the position (offset) of the last character of a text span in relation the text it is from. - + text span - selector A text span is a subset of contiguous sequence of characters of a textual entity. - + selector + @@ -3718,7 +3718,7 @@ of endpoints (a start point and an endpoint). t-statistic A t-statistic is a ratio of the departure of an estimated parameter from its notional value and its standard error. - + @@ -3726,7 +3726,7 @@ of endpoints (a start point and an endpoint). microarray probe set identifier A microarray probe set identifier is an identifier for a set of probe pairs selected to represent expressed sequences on an array. - + @@ -3734,7 +3734,7 @@ of endpoints (a start point and an endpoint). gene expression value A gene expression value is a measured value obtained from a gene expression experiment. - + @@ -3742,7 +3742,7 @@ of endpoints (a start point and an endpoint). differential gene expression ratio A differential gene expression ratio is the ratio of gene expression values from a test sample compared to a control sample. - + @@ -3750,7 +3750,7 @@ of endpoints (a start point and an endpoint). genotype A genotype is a functional specification of a biological entity in terms of its genetic composition (or lack thereof). - + @@ -3759,7 +3759,7 @@ of endpoints (a start point and an endpoint). A vocabulary is a collection of terms. - + @@ -3767,7 +3767,7 @@ of endpoints (a start point and an endpoint). t-statistic based increased differential gene expression A t-statistic based increased differential gene expression is a differential gene expression ratio in which the t-statistic is greater than zero. - + @@ -3775,7 +3775,7 @@ of endpoints (a start point and an endpoint). t-statistic based decreased differential gene expression A t-statistic based decreased differential gene expression is a differential gene expression ratio in which the t-statistic is less than zero. - + @@ -3783,7 +3783,7 @@ of endpoints (a start point and an endpoint). date of database submission A date of database submission refers to the moment in time in which some information was submitted/received to a database system. - + @@ -3791,7 +3791,7 @@ of endpoints (a start point and an endpoint). concentration concentration is the quantity of a constituent divided by the total volume of a mixture. - + @@ -3800,7 +3800,7 @@ of endpoints (a start point and an endpoint). pH is a measure of the activity of the (solvated) hydrogen ion. pH is defined as the decimal logarithm of the reciprocal of the hydrogen ion activity, aH+, in a solution. - + @@ -3810,7 +3810,7 @@ of endpoints (a start point and an endpoint). electronic configuration electronic structure is the electron configuration is the distribution of electrons of an atom or molecule (or other physical structure) in atomic or molecular orbitals. the electron configuration of the neon atom is 1s2 2s2 2p6. - + @@ -3818,16 +3818,16 @@ of endpoints (a start point and an endpoint). crystal structure A crystal structure is the arrangement of atoms or molecules in a crystalline liquid or solid. - + pathway - biological pathway A pathway is an effective specification that outlines a set of actions that forms a way to achieve an objective. - + biological pathway + @@ -3835,17 +3835,17 @@ of endpoints (a start point and an endpoint). centrality measure A central tendency measure is a central value or a typical value for a probability distribution. - + mean - A mean is the central tendency of a collection of numbers taken as the sum of the numbers divided by the size of the collection. - arithmeritic mean average - + arithmeritic mean + A mean is the central tendency of a collection of numbers taken as the sum of the numbers divided by the size of the collection. + @@ -3853,7 +3853,7 @@ of endpoints (a start point and an endpoint). median A median is the numerical value separating the higher half of a sample, a population, or a probability distribution, from the lower half. - + @@ -3861,7 +3861,7 @@ of endpoints (a start point and an endpoint). mode A mode is the value that appears most often in a set of data. - + @@ -3869,16 +3869,16 @@ of endpoints (a start point and an endpoint). sum A sum is the result of adding a set of values together. - + minimal value - A minimal value is smallest value of an attribute for the entities in the defined set. min - + A minimal value is smallest value of an attribute for the entities in the defined set. + @@ -3887,7 +3887,7 @@ of endpoints (a start point and an endpoint). max A maximal value is largest value of an attribute for the entities in the defined set. - + @@ -3895,7 +3895,7 @@ of endpoints (a start point and an endpoint). member count A count of the instances of a class or members in a collection. - + @@ -3904,7 +3904,7 @@ of endpoints (a start point and an endpoint). A union is a list of all of the values of an attribute for the entities in the defined set. - + @@ -3912,17 +3912,17 @@ of endpoints (a start point and an endpoint). intersection An intersection is a list of only the values of an attribute for the entities in the defined set where all entities have that value. - + sequence + ordered list A sequence is an ordered list of entities. Like a set, it contains members (also called elements, or terms). For example, (M, A, R, Y) is a sequence of letters that differs from (A, R, M, Y), as the ordering matters, and (1, 1, 2, 3, 5, 8), which contains the number 1 at two different positions, is a valid sequence. - ordered list - + @@ -3930,7 +3930,7 @@ of endpoints (a start point and an endpoint). gene-disease association linked with causal mutation A gene-variant disease association in which a mutation in the gene/protein results in the development or maintenance of the disease. - + @@ -3939,7 +3939,7 @@ of endpoints (a start point and an endpoint). A gene disease association in which the gene is a therapeutic marker for the disease. gene-disease association arising from a therapeutic role of the gene/protein - + @@ -3947,7 +3947,7 @@ of endpoints (a start point and an endpoint). gene-disease biomarker association A gene-disease association in which the gene/protein is involved in the etiology or maintenance of the disease. - + @@ -3956,7 +3956,7 @@ of endpoints (a start point and an endpoint). gene variant-disease association A gene-disease association in which a sequence variation (a mutation, a SNP) is associated with the disease. - + @@ -3964,7 +3964,7 @@ of endpoints (a start point and an endpoint). gene-disease association linked with altered gene expression A gene-disease association in which the disease phenotype is associated with an altered expression of the gene. - + @@ -3973,7 +3973,7 @@ of endpoints (a start point and an endpoint). A gene-disease association in which the disease phenotype is associated with post-translational modifications in the protein product. methylation or phosphorylation of protein product - + @@ -3981,7 +3981,7 @@ of endpoints (a start point and an endpoint). number of objects produced number of objects produced is a count of objects that were produced in some process. - + @@ -3989,7 +3989,7 @@ of endpoints (a start point and an endpoint). number of objects consumed number of objects consumed is a count of objects that were consumed in some process. - + @@ -3997,7 +3997,7 @@ of endpoints (a start point and an endpoint). difference in number of objects produced A difference in number of objects produced is a count of the number of objects produced with respect to a second variable (space, time, etc) - + @@ -4005,7 +4005,7 @@ of endpoints (a start point and an endpoint). increase in number of objects produced An increase in the number of objects produced is the positive value of a difference in number of objects produced. - + @@ -4013,7 +4013,7 @@ of endpoints (a start point and an endpoint). decrease in number of objects produced An decrease in the number of objects produced is the negative value of a difference in number of objects produced. - + @@ -4021,7 +4021,7 @@ of endpoints (a start point and an endpoint). user account user account allows a user to authenticate to system services and be granted authorization to access them. - + @@ -4029,7 +4029,7 @@ of endpoints (a start point and an endpoint). annotation An annotation is a written explanatory or critical description, or other in-context information (e.g., pattern, motif, link), that has been associated with data or other types of information. - + @@ -4037,7 +4037,7 @@ of endpoints (a start point and an endpoint). comment A comment is a verbal or written remark often related to an added piece of information, or an observation or statement. - + @@ -4045,7 +4045,7 @@ of endpoints (a start point and an endpoint). audio recording An audio recording is an electrical or mechanical inscription and re-creation of sound waves, such as spoken voice, singing, instrumental music, or sound effects. - + @@ -4053,7 +4053,7 @@ of endpoints (a start point and an endpoint). issue An issue is a single instance of a periodically published journal, magazine, or newspaper. - + @@ -4061,16 +4061,16 @@ of endpoints (a start point and an endpoint). slideshow A slideshow is a visual presentation of information contained within a collection of slides. - + database cross-reference - dbxref A database cross-reference is an association between one data item and another. - + dbxref + @@ -4078,7 +4078,7 @@ of endpoints (a start point and an endpoint). exact cross-reference An exact cross-reference is a database cross-reference in which one entity is equivalent to the other based on all the entitie's attributes (minus the source). - + @@ -4086,7 +4086,7 @@ of endpoints (a start point and an endpoint). statement A statement is a proposition that is either (a) a meaningful declarative sentence that is either true or false, or (b) that which a true or false declarative sentence asserts. - + @@ -4094,7 +4094,7 @@ of endpoints (a start point and an endpoint). slope A slope or gradient of a line describes its steepness, incline, or grade. A higher slope value indicates a steeper incline. Slope is normally described by the ratio of the "rise" divided by the "run" between two points on a line. - + @@ -4102,7 +4102,7 @@ of endpoints (a start point and an endpoint). software process identifier A software process identifier is an identifier for a software process in some operating system. - + @@ -4110,7 +4110,7 @@ of endpoints (a start point and an endpoint). database row A database row is a row that is part of a database table. - + @@ -4120,7 +4120,7 @@ of endpoints (a start point and an endpoint). http://en.wikipedia.org/wiki/SADI a SADI semantic web service is a semantic web service that follows the SADI specification sadi - + @@ -4128,7 +4128,7 @@ of endpoints (a start point and an endpoint). semantic web service a semantic web service is a web service that provides a formal, machine understanble description of its functionality. - + @@ -4137,7 +4137,7 @@ of endpoints (a start point and an endpoint). http://en.wikipedia.org/wiki/REST a REST web service is a web service that provides functionality according to the Representational State Transfer (REST) specification. - + @@ -4146,7 +4146,7 @@ of endpoints (a start point and an endpoint). http://en.wikipedia.org/wiki/SOAP a SOAP web service is a web service that implements Simple Object Access Protocol (SOAP). - + @@ -4154,7 +4154,7 @@ of endpoints (a start point and an endpoint). media media are audo/visual/audiovisual modes of communicating information for mass consumption. - + @@ -4162,7 +4162,7 @@ of endpoints (a start point and an endpoint). history history is a sequence of past events. - + @@ -4170,7 +4170,7 @@ of endpoints (a start point and an endpoint). structural motif A structural motif is a pattern in a structure formed by the spatial arrangement of atoms. - + @@ -4179,7 +4179,7 @@ of endpoints (a start point and an endpoint). A catalog is a systemic collection of items of the same type. registry - + @@ -4187,7 +4187,7 @@ of endpoints (a start point and an endpoint). likelihood Likelihood is the hypothetical probability that an event that has already occurred would yield a specific outcome. - + @@ -4195,7 +4195,7 @@ of endpoints (a start point and an endpoint). log likelihood Log likelihood is the natural logarithm of the likelihood function - + @@ -4204,7 +4204,7 @@ of endpoints (a start point and an endpoint). A standard score is the (signed) number of standard deviations an observation or datum is above the mean. z-value, z-score, normal score, standardadized variable. - + @@ -4213,7 +4213,7 @@ of endpoints (a start point and an endpoint). The set of all numbers x satisfying 0<=x<=1 is an interval which contains 0 and 1, as well as numbers between them. an interval is a set of real numbers with the property that any number that lies between thwo numbers in the set is also included in the set. - + @@ -4223,7 +4223,7 @@ of endpoints (a start point and an endpoint). (0,1) is an open interval that is greater than 0 and less than 1. an open interval is an interval that does not include its endpoints. - + @@ -4233,7 +4233,7 @@ of endpoints (a start point and an endpoint). A closed interval is an interval that includes its endpoints, and is denoted with square brackets. [0,1] is a closed interval that is greater than or equal to 0 and less than or equal to 1. - + @@ -4242,7 +4242,7 @@ of endpoints (a start point and an endpoint). a chemical-pathway association is an association between a chemical and a pathway. drug-pathway association - + @@ -4250,7 +4250,7 @@ of endpoints (a start point and an endpoint). left open interval a left open interval is an interval in which there is no element that is smaller than all other elements. - + @@ -4258,7 +4258,7 @@ of endpoints (a start point and an endpoint). right open interval a right open interval is an interval in which there is no element that is greater than all other elements. - + @@ -4266,7 +4266,7 @@ of endpoints (a start point and an endpoint). right closed interval a right closed interval is an interval in which there is a real number that is larger than all of its elements. - + @@ -4274,7 +4274,7 @@ of endpoints (a start point and an endpoint). left closed interval a left closed interval is an interval in which there is a real number that is smaller than all its elements. - + @@ -4282,7 +4282,7 @@ of endpoints (a start point and an endpoint). pharmacokinetic pathway a pharmacokinetic pathway is a metabolic pathway which describes the metabolism of a drug molecule. - + @@ -4290,7 +4290,7 @@ of endpoints (a start point and an endpoint). pharmacodynamic pathway a pharmacodynamic pathay is a regulatory pathway in which a drug molecule regulates the activity of one or more components organized in a pathway. - + @@ -4298,7 +4298,7 @@ of endpoints (a start point and an endpoint). chemical-gene assocation a chemical-gene assocation is an assocation between a chemical and a gene. - + @@ -4306,7 +4306,7 @@ of endpoints (a start point and an endpoint). set item set item is an item in a set. - + @@ -4314,7 +4314,7 @@ of endpoints (a start point and an endpoint). collection item a collection item is an item in a collection. - + @@ -4322,7 +4322,7 @@ of endpoints (a start point and an endpoint). list item a list item is an item in a list. - + @@ -4330,7 +4330,7 @@ of endpoints (a start point and an endpoint). ordered list item an ordered list item is an item in an ordered list. - + @@ -4338,7 +4338,7 @@ of endpoints (a start point and an endpoint). coding frame offset a coding frame offset is a numeric value that indicates the number of bases from a reference start codon position. - + @@ -4346,16 +4346,16 @@ of endpoints (a start point and an endpoint). coding sequence a coding sequence is a sequence of nucleotides which encode a RNA or protein product.. - + ovopub - ovopub+ An ovopub is an information content entity that contains and links to one or more resources and/or statements, including those describing its provenance, and is itself a dereferenceable resource. - + ovopub+ + @@ -4364,7 +4364,7 @@ of endpoints (a start point and an endpoint). A collection ovopub is an ovopub that contains and links to one or more assertion subgraphs and/or ovopubs, as well as statements describing its provenance. It is used to share a specific set of items or restrict a search to the resources contained therein. - + @@ -4372,7 +4372,7 @@ of endpoints (a start point and an endpoint). assertion ovopub An assertion ovopub is an ovopub that contains and links to an assertion subgraph with one or more statements that may be true or false, as well as statements describing its provenance. - + @@ -4380,7 +4380,7 @@ of endpoints (a start point and an endpoint). date of issue the date at which an information content entity was made public. - + @@ -4388,7 +4388,7 @@ of endpoints (a start point and an endpoint). author list an ordered list of authors. - + @@ -4396,7 +4396,7 @@ of endpoints (a start point and an endpoint). ordered list an ordered list is a list in which items are sequentially ordered. - + @@ -4404,7 +4404,7 @@ of endpoints (a start point and an endpoint). middle name a middle name is a name assigned to an individual that is not the first or last name. - + @@ -4412,7 +4412,7 @@ of endpoints (a start point and an endpoint). middle initial a middle initial is an abbreviated middle name. - + @@ -4420,7 +4420,7 @@ of endpoints (a start point and an endpoint). telephone number a telephone number is an identifier used to connect to a physical device capable of transfering voice or data over a network. - + @@ -4428,7 +4428,7 @@ of endpoints (a start point and an endpoint). cellular phone number a cellular phone number is a number to connect to a mobile device - + @@ -4436,7 +4436,7 @@ of endpoints (a start point and an endpoint). fax number a fax number is a number to connect to fax device - + @@ -4445,7 +4445,7 @@ of endpoints (a start point and an endpoint). IP address an IP number is an number to connect to a device on the internet. - + @@ -4453,7 +4453,7 @@ of endpoints (a start point and an endpoint). email address an email address is an identifier to send mail to particular electronic mailbox. - + @@ -4461,7 +4461,7 @@ of endpoints (a start point and an endpoint). work phone number a work phone number is the number to connect to an phone at a place of work. - + @@ -4469,7 +4469,24 @@ of endpoints (a start point and an endpoint). home phone number a home phone number is the number to connect to an phone at a place of residence. - + + + + + + protein expression value + + A protein expression value is a quantity obtained from a protein expression experiment. + + + + + + copy number variation + + CNV + copy number variation refers to the number of deletions/duplications of a DNA region as compared to some reference state. + @@ -4477,7 +4494,7 @@ of endpoints (a start point and an endpoint). primary structure descriptor A primary structure descriptor describes a biomolecular object in terms of a 1D or 2D topology. - + @@ -4487,7 +4504,7 @@ of endpoints (a start point and an endpoint). A protein acid sequence is the character representation of the molecular structure of a protein. amino acid sequence polypeptide sequence - + @@ -4495,7 +4512,7 @@ of endpoints (a start point and an endpoint). nucleic acid sequence A nucleic acid sequence is a symbolic representation of the sequence of nucleic acid residues in a nucleic acid. - + @@ -4504,7 +4521,7 @@ of endpoints (a start point and an endpoint). A ribonucleic acid sequence is a symbolic representation of the sequence of ribonucleic acid residues in a ribonucleic acid. RNA sequence - + @@ -4513,7 +4530,7 @@ of endpoints (a start point and an endpoint). A deoxyribonucleic acid sequence is a symbolic representation of the sequence of deoxyribonucleic acid residues in a deoxyribonucleic acid. DNA sequence - + @@ -4521,7 +4538,7 @@ of endpoints (a start point and an endpoint). biological data biological data is scientific data relevant to biology. - + @@ -4529,7 +4546,7 @@ of endpoints (a start point and an endpoint). secondary structure descriptor A secondary structure descriptor describes local topological patterns in a biopolymer. - + @@ -4537,7 +4554,7 @@ of endpoints (a start point and an endpoint). tertiary structure descriptor A tertiary structure descriptor describes 3D topological patterns in a biopolymer. - + @@ -4545,7 +4562,7 @@ of endpoints (a start point and an endpoint). quaternary structure A quaternary structure descriptor describes topological patterns in a multi-unit biopolymer complex. - + @@ -4553,7 +4570,7 @@ of endpoints (a start point and an endpoint). genetic data genetic data is data pertaining to genetics. - + @@ -4561,7 +4578,7 @@ of endpoints (a start point and an endpoint). PDB chain identifier A PDB chain identifier is a alphabetical label to identify a molecule in a structure provided by the Protein DataBank . - + @@ -4569,7 +4586,7 @@ of endpoints (a start point and an endpoint). PDB record identifier A PDB record identifier is an identifier for a PDB generated record. - + @@ -4577,7 +4594,7 @@ of endpoints (a start point and an endpoint). evolutionary lineage evolutionary lineage is a sequence of species, that form a line of descent, each new species the direct result of speciation from an immediate ancestral species. - + @@ -4585,7 +4602,7 @@ of endpoints (a start point and an endpoint). family history family history is the systematic narrative and research of past events relating to a specific family, or specific families. - + @@ -4593,7 +4610,7 @@ of endpoints (a start point and an endpoint). generation number generation number is a count of the number of biological reproduction events elapsed from some starting reference point. - + @@ -4601,7 +4618,7 @@ of endpoints (a start point and an endpoint). bioinformatic data bioinformatic data is data genereated or used for computer-based investigations of biological phenomena. - + @@ -4609,7 +4626,7 @@ of endpoints (a start point and an endpoint). sequence alignment A sequence alignment is the character-based alignment of sequences using some method. - + @@ -4617,7 +4634,7 @@ of endpoints (a start point and an endpoint). multiple sequence alignment A multiple sequence alignment is a sequence alignment involving more than two sequences. - + @@ -4625,7 +4642,7 @@ of endpoints (a start point and an endpoint). pairwise sequence alignment A pairwise sequence alignment is the alignment of exactly 2 sequences. - + @@ -4633,7 +4650,7 @@ of endpoints (a start point and an endpoint). medical data medical data is data of interest to medicine. - + @@ -4641,7 +4658,7 @@ of endpoints (a start point and an endpoint). drug regulatory authority A drug regulatory authority is a regulatory authority which acts to control what substances may be used to treat individuals. - + @@ -4649,7 +4666,7 @@ of endpoints (a start point and an endpoint). biochemical pathway A biochemical pathway specifies a series of biochemical modifications and transformations towards achieving some biological outcome. - + @@ -4657,7 +4674,7 @@ of endpoints (a start point and an endpoint). chemical reaction pathway A chemical reaction pathway specifies a series of chemical reactions towards producing some chemical product. - + @@ -4665,7 +4682,7 @@ of endpoints (a start point and an endpoint). chemical synthesis pathway A chemical synthesis pathway is a pathway involved in the assembly of a chemical. - + @@ -4673,7 +4690,7 @@ of endpoints (a start point and an endpoint). chemical degradation pathway A chemical degradation pathway is a pathway involved in the disassembly of a chemical. - + @@ -4681,7 +4698,7 @@ of endpoints (a start point and an endpoint). 3d structure model A 3D structure model is a representation of the spatial arrangement of one or more chemical entities. - + @@ -4689,7 +4706,7 @@ of endpoints (a start point and an endpoint). sequence profile A sequence profile is provides the preference for a character at each position of an abstracted sequence. - + @@ -4698,7 +4715,7 @@ of endpoints (a start point and an endpoint). A metabolic pathway is a series of biochemical reactions that begins with one or more substrates and ends with one or more products. - + @@ -4706,7 +4723,7 @@ of endpoints (a start point and an endpoint). regulatory pathway A regulatory pathway is a series of biochemical reactions that lead to the increase or decrease of activity of participating molecular components. - + @@ -4714,7 +4731,7 @@ of endpoints (a start point and an endpoint). medical history A medical history is a record of the events of a recipient of medical care. - + @@ -4722,7 +4739,7 @@ of endpoints (a start point and an endpoint). biomolecular structure descriptor A biomolecular structure descriptor is structure description for organic compounds. - + @@ -4730,7 +4747,7 @@ of endpoints (a start point and an endpoint). molecular structure file A molecular structure file is a file that contains a description of molecular structure. - + @@ -4739,16 +4756,16 @@ of endpoints (a start point and an endpoint). CHEMINF:000085 molecular structure descriptor is data that describes some aspect of the molecular structure (composition) and is about some chemical entity. - + chemical data - A chemical datum is a scientific data item which conforms to some specification, either for how it is calculated or for how it is measured, and is commonly used in the domain of chemistry to name and differentiate different numeric properties (both calculated and measured) which are about chemical entities. CHEMINF:000123 - + A chemical datum is a scientific data item which conforms to some specification, either for how it is calculated or for how it is measured, and is commonly used in the domain of chemistry to name and differentiate different numeric properties (both calculated and measured) which are about chemical entities. + @@ -4756,7 +4773,7 @@ of endpoints (a start point and an endpoint). PDB file A PDB file is a molecular structure file specified by the Protein DataBank (PDB). - + @@ -4764,13 +4781,13 @@ of endpoints (a start point and an endpoint). collection of 3d molecular structure models A collection of 3D molecular structure models is just that. - + - sio-v1.0.16-ice-subset.owl - - + sio-v1.17.0-ice-subset.owl + + \ No newline at end of file diff --git a/ontology/sio/release/sio-subset-labels.owl b/ontology/sio/release/sio-subset-labels.owl index 27f19aa1..bd874472 100644 --- a/ontology/sio/release/sio-subset-labels.owl +++ b/ontology/sio/release/sio-subset-labels.owl @@ -11,16 +11,16 @@ - 1.0.16 - sio-v1.0.16-labels-subset.owl + 1.17.0 + sio-v1.17.0-labels-subset.owl http://creativecommons.org/licenses/by/4.0/ http://orcid.org/0000-0003-4727-9435 Michel Dumontier http://semanticscience.org/resource/ http://sio.semanticscience.org http://www.jbiomedsem.com/content/5/1/14 + Semanticscience Integrated Ontology (SIO) en - free to use,share,modify. modify with attribution [http://creativecommons.org/licenses/by/4.0/]. Contributors are those that engage in discussions in the context of SIO (in alphabetical order): christopher baker joachim baran @@ -48,7 +48,6 @@ robert stevens mark wilkinson karin verspoor natalia villanueva-rosales - Semanticscience Integrated Ontology (SIO) The semanticscience integrated ontology (SIO) provides a simple, integrated ontology (types, relations) for objects, processes and their attributes. This project provides foundational support for the Bio2RDF (http://bio2rdf.org) and SADI (http://sadiframework.org) projects. @@ -57,14 +56,15 @@ website: http://semanticscience.org email: sio-ontology@googlegroups.com mailing list: http://groups.google.com/group/sio-ontology + free to use,share,modify. modify with attribution [http://creativecommons.org/licenses/by/4.0/]. general class inclusion axioms: 'is part of' some 'physical entity' subClassOf 'is located in' some 'physical entity' role chains: 'has capability' o 'is realized in' -> 'is participant in' sio - - + + @@ -109,7 +109,7 @@ role chains: - + @@ -118,42 +118,42 @@ role chains: comment A comment is a verbal or written remark often related to an added piece of information, or an observation or statement. - + - + - + - + - + - + - + - + @@ -164,11 +164,11 @@ role chains: is related to - A is related to B iff there is some relation between A and B. - core relations+ + core 'is related to' is the top level relation in SIO - + A is related to B iff there is some relation between A and B. + @@ -177,7 +177,7 @@ role chains: core has attribute is a relation that associates a entity with an attribute where an attribute is an intrinsic characteristic such as a quality, capability, disposition, function, or is an externally derived attribute determined from some descriptor (e.g. a quantity, position, label/identifier) either directly or indirectly through generalization of entities of the same type. - + @@ -186,7 +186,7 @@ role chains: is attribute of is a relation that associates an attribute with an entity where an attribute is an intrinsic characteristic such as a quality, capability, disposition, function, or is an externally derived attribute determined from some descriptor (e.g. a quantity, position, label/identifier) either directly or indirectly through generalization of entities of the same type. - + @@ -196,7 +196,7 @@ role chains: the symbol '%' denotes a proportion in relation to a whole. - + @@ -208,7 +208,7 @@ role chains: has part is a transitive, reflexive and antisymmetric relation between a whole and itself or a whole and its part. - + @@ -216,7 +216,7 @@ role chains: is time boundary of - + @@ -228,7 +228,7 @@ role chains: has proper part is an antisymmetric, irreflexive (normally transitive) relation between a whole and a distinct part. - + @@ -237,7 +237,7 @@ role chains: has boundary is a mereological relation between a whole and boundary located at its periphery. the surface of an apple is a 2D boundary of the apple. - + @@ -248,14 +248,14 @@ role chains: a collection of cars has as a car as a member has member is a mereological relation between a collection and an item. - + is denoted by - + @@ -264,11 +264,11 @@ role chains: is located in A is located in B iff the spatial region occupied by A is part of the spatial region occupied by B. [T][R] A parasite in the interior of a person's intestine is located in their intestinal lumen. - OBO_REL:located_in core + OBO_REL:located_in - + @@ -279,7 +279,7 @@ role chains: - + @@ -289,7 +289,7 @@ role chains: is agent in is a relation between an entity and a process, where the entity is present throughout the process, no permanent material change occurs, and is a causal participant in the process. sadi - + @@ -297,7 +297,7 @@ role chains: is provider of is provider of is a relation between a source and the entity it makes available. - + @@ -307,7 +307,7 @@ role chains: is provided by is a relation between an entity and the entity that provides it. - + @@ -315,11 +315,11 @@ role chains: is part of - core OBO_REL:part_of + core is part of is a transitive, reflexive and anti-symmetric mereological relation between a whole and itself or a part and its whole. - + @@ -331,7 +331,7 @@ role chains: core is proper part of is an asymmetric, irreflexive (normally transitive) relation between a part and its distinct whole. - + @@ -340,7 +340,7 @@ role chains: is member of is a mereological relation between a item and a collection. - + @@ -349,52 +349,52 @@ role chains: is boundary of is a mereological relation between a boundary located at the periphery of a whole. - + is contained in - core - OBO_REL:contained_in A is contained in B iff the spatial region occupied by A is part of the spatial region occupied by B and A is not part of B. [T] + OBO_REL:contained_in + core - + has participant - OBO_REL:has_participant core + OBO_REL:has_participant has participant is a relation that describes the participation of the object in the (processual) subject. - + has agent - OBO_REL:has_agent core sadi + OBO_REL:has_agent has agent is a relation between a process and an entity, where the entity is present throughout the process and is a causal participant in the process. - + is location of - nlp+ A is location of B iff the spatial region occupied by A has the spatial region occupied by B as a part. [T][R] + nlp+ - + @@ -403,7 +403,7 @@ role chains: contains A contains B iff the spatial region occupied by A has the spatial region occupied by B as a part, and B is not part of A. [T] - + @@ -411,11 +411,11 @@ role chains: is connected to - core nlp + core A is connected to B iff there exists a fiat, material or temporal path between A and B. [S][T] - + @@ -427,7 +427,7 @@ role chains: OBO_REL:adjacent_to A is adjacent to B iff there is a small, but non-zero distance between A and B - + @@ -436,7 +436,7 @@ role chains: is represented by: a relation between an entity and some symbol. - + @@ -445,7 +445,7 @@ role chains: is supported by is a relation between a proposition and something that supports the truth of the assertion. - + @@ -454,21 +454,21 @@ role chains: has disputing evidence is a relation between a proposition and something that disputes (does not directly support) the truth of the assertion. - + is supporting evidence for - + is disputing evidence for - + @@ -477,7 +477,7 @@ role chains: core a represents b when a serves as a sign, symbol or model of b. - + @@ -486,7 +486,7 @@ role chains: is positionally after is positionally after is a relation between entities placed on a dimensional axis in which the projection of the position of the first entity is numerically greater than the projection of the position of the second entity. - + @@ -494,7 +494,7 @@ role chains: is referred to by A is referred to by B iff B is an informational entity that makes reference to A. - + @@ -502,7 +502,7 @@ role chains: has concretization A has concretization B iff A is an informational entity and B is the a quality of some material entity. - + @@ -511,7 +511,7 @@ role chains: A is concretization of B iff A is a quality of a material entity and B is an informational entity. - + @@ -520,7 +520,7 @@ role chains: is measurement value of is a relation between a value and the entity that it is a measurement of. - + @@ -531,7 +531,7 @@ role chains: - + @@ -541,7 +541,7 @@ role chains: has quality is a relation between an entity and the quality that it bears. - + @@ -551,7 +551,7 @@ role chains: - + @@ -559,7 +559,7 @@ role chains: is source of is source of is a relation between a source of information about some entity. - + @@ -571,7 +571,7 @@ role chains: - + @@ -580,7 +580,7 @@ role chains: is unit of is a relation between a unit and a quantity that it is a multiple of. - + @@ -591,7 +591,7 @@ role chains: michel's hair has the quality of being brown in colour. - + @@ -600,7 +600,7 @@ role chains: is property of is property of is a relation betweena quality, capability or role and the entity that it and it alone bears. - + @@ -611,7 +611,7 @@ role chains: - + @@ -621,7 +621,7 @@ role chains: is function of is a relation between a function and an entity that it is a property of. - + @@ -632,7 +632,7 @@ role chains: - + @@ -642,7 +642,7 @@ role chains: has role is a relation between an entity and a role that it bears. - + @@ -653,7 +653,7 @@ role chains: has output is a relation between an process and an entity, where the entity is present at the end of the process. - + @@ -663,7 +663,7 @@ role chains: sadi has input is a relation between a process and an entity, where the entity is present at the beginning of the process. - + @@ -674,7 +674,7 @@ role chains: sadi - + @@ -684,7 +684,7 @@ role chains: is output of is a relation between an entity and a process, where the entity is present at the end of the process. sadi - + @@ -693,7 +693,7 @@ role chains: is implementation of is a relation between an information entity and a specification that it conforms to. - + @@ -701,7 +701,7 @@ role chains: has implementation has implementation is a relation between a specification and an implementation that conforms to it. - + @@ -712,7 +712,7 @@ role chains: - + @@ -722,7 +722,7 @@ role chains: is disposition of is a relation between a disposition and the entity that it is a property of. - + @@ -732,7 +732,7 @@ role chains: is positionally before is a relation between entities placed on a dimensional axis in which the projection of the position of the first entity is numerically less than the projection of the position of the second entity. - + @@ -742,7 +742,7 @@ role chains: is directly after is a relation between entities placed on a dimensional axis in which the projection of the position of the first entity is numerically greater than the projection of the position of the second entity, and the entities are adjacent to one another. - + @@ -753,7 +753,7 @@ role chains: - + @@ -764,18 +764,18 @@ role chains: A transitive, symmetric, temporal relation in which one entity is causally related with another non-identical entity. core - + is derived from - OBO_REL:derives_from core A transitive temporal relation in which one entity was materially formed from another non-identical entity. + OBO_REL:derives_from - + @@ -785,9 +785,9 @@ role chains: a derives to b if and only if a or some part thereof is consumed in the formation of b. - - + + @@ -796,7 +796,7 @@ role chains: a immediately derives into b if and only if a or some significant part thereof is consumed in the formation of b and there are no identifiable intermediate entities between a and b. - + @@ -804,17 +804,17 @@ role chains: is immediately derived from A non-transitive temporal relation in which one entity is immediately derived from a non-identical entity such that there are no intermediate entities between them. - + precedes - core A transitive, temporal relation in which one process precedes (has occured earlier than) another process. + core - + @@ -824,7 +824,7 @@ role chains: OBO_REL:preceded_by - + @@ -832,7 +832,7 @@ role chains: immediately precedes A non-transitive temporal relation in which one process immediately precedes another process, such that there is no interval of time between the two processes. - + @@ -841,7 +841,7 @@ role chains: A non-transitive temporal relation in which one process is immediately preceded by another process, such that there is no interval of time between the two processes. - + @@ -850,7 +850,7 @@ role chains: is reference for is a relation between a document that provides information about an entity. - + @@ -859,7 +859,7 @@ role chains: has source is a relation between an entity and another entity from which it stems from. - + @@ -868,7 +868,7 @@ role chains: is annotation of is a relation between some textual entity and the entity that it annotates. - + @@ -881,7 +881,7 @@ role chains: - + @@ -892,7 +892,7 @@ role chains: core is variant of: a relationship indicating that two entities are different (by some measure), but either achieve the same objectives in different ways or are permutations of one another (temporal, logical or otherwise) - + @@ -901,7 +901,7 @@ role chains: a car has an engine as a direct part has direct part is a relation to specify a part at a particular level of granularity - + @@ -910,7 +910,7 @@ role chains: A is prior version of B iff A is a variant of B and B derives from A. - + @@ -919,7 +919,7 @@ role chains: cites is a relation to refer to by way of example, authority or proof. - + @@ -927,7 +927,7 @@ role chains: is cited by is cited by is a relation from an object that is referred to by way of example, authority or proof. - + @@ -936,7 +936,7 @@ role chains: is similar to is similar to is a relation between two entities that share one or more features. - + @@ -945,7 +945,7 @@ role chains: A is subsequent version of B iff A is a variant of B and A derives from B. - + @@ -954,9 +954,9 @@ role chains: is covalently connected to (transitive) - - + + @@ -965,7 +965,7 @@ role chains: has target is a relation between a process and an entity, where the entity is present at the beginning of the process and undergoes a change or transformation in the process. - + @@ -974,7 +974,7 @@ role chains: glucose is a target in the hexokinase-mediated conversion of glucose to glucose-6-phosphate. is target in is a relation between an entity and a process, where the entity is present at the beginning of the process and undergoes a change or transformation in the process. - + @@ -984,48 +984,48 @@ role chains: is weakly interacting with (transitive) is weakly interacting with is a symmetric relation between two molecular entities (or any part thereof) that are interacting through some weak force (van der waals, hydrogen bonds, electrostatic interactions) - - - + + + - + - + - + - + - - + + - + - + - + - + - + - - + + - + @@ -1037,7 +1037,7 @@ role chains: a is causally related to b iff there is a causal chain of events from a to b - + @@ -1047,7 +1047,7 @@ role chains: is direct part of is a relation between a specific part (at some level of granularity) and its whole. - + @@ -1058,7 +1058,7 @@ role chains: sadi - + @@ -1067,7 +1067,7 @@ role chains: has product is a relation between an process and an entity, where a new entity exists at the end of the process. sadi - + @@ -1076,7 +1076,7 @@ role chains: core is component part of is a relation between a component and a whole, where the component is instrinsic to the whole, and loss of the part would change the kind that the whole is. - + @@ -1086,7 +1086,7 @@ role chains: A is spatiotemporally related to B iff A is in the spatial or temporal vicinity of B core - + @@ -1095,7 +1095,7 @@ role chains: A 'is surrounded by' B iff the A 'is contained by' B and A 'is adjacent to' B or A 'is directly connected to' B. - + @@ -1103,7 +1103,7 @@ role chains: surrounds A 'surrounds' B iff the A 'contains' B and A 'is adjacent to' B or A 'is directly connected to' B. - + @@ -1113,16 +1113,16 @@ role chains: overlaps with A overlaps with B iff there is some C that is part of both A and B. [S][R] - - + + - + - + - + @@ -1132,7 +1132,7 @@ role chains: is about is about is a relation between an information content entity and the entity that its primary subject. - + @@ -1142,7 +1142,7 @@ role chains: is covalently connected to is a relation between an atom and another atom. - + @@ -1151,7 +1151,7 @@ role chains: is weakly interacting with - + @@ -1160,7 +1160,7 @@ role chains: A relation between an information content entity and a product that it (directly/indirectly) specifies - + @@ -1170,7 +1170,7 @@ role chains: - + @@ -1180,16 +1180,16 @@ role chains: the english language version of 'war of the worlds' is manifested as a collection of english language versions of the book. - + is causally related from - a is causally related from b iff there is a causal chain of events from b to a core + a is causally related from b iff there is a causal chain of events from b to a - + @@ -1198,7 +1198,7 @@ role chains: core realizes is a relation between a process and a realizable entity (role, function, disposition). - + @@ -1207,7 +1207,7 @@ role chains: the role of a patient is realized in medical examination - + @@ -1215,7 +1215,7 @@ role chains: satisfies satisfies is a relation between an entity and the specification or objective that it conforms to. - + @@ -1223,7 +1223,7 @@ role chains: is satisfied by - + @@ -1235,7 +1235,7 @@ role chains: was created by the iPhone was created by Apple Inc - + @@ -1244,7 +1244,7 @@ role chains: is created by is a relation between an entity and its creator. - + @@ -1254,7 +1254,7 @@ role chains: has component part is a relation between a whole and a component part where the component is instrinsic to the whole, and loss of the part would change the kind that it is. - + @@ -1262,7 +1262,7 @@ role chains: has expression the story 'war of worlds' is expressed as every language edition of the book 'war of the worlds' - + @@ -1272,20 +1272,20 @@ role chains: is expression of is a relation between more concrete expression of some conceptualization. - + is broader than (t) - A is broader than B (t) iff for A is broader than B. http://www.w3.org/2004/02/skos/core#narrowerTransitive - + A is broader than B (t) iff for A is broader than B. + - + @@ -1294,10 +1294,10 @@ role chains: is narrower than (t) http://www.w3.org/2004/02/skos/core#broaderTransitive A is narrower than B (t) iff for A is narrower than B. - + - + @@ -1305,23 +1305,23 @@ role chains: is generically related with A is generically related with B iff A is an abstract entity or an information content entity and B is a information content entity or a physical entity, respectively. - + is manifestation of - + is narrower than - http://www.w3.org/2004/02/skos/core#broader A is narrower than B iff the meaning of term A is narrower in scope than the meaning of term B + http://www.w3.org/2004/02/skos/core#broader - + @@ -1330,7 +1330,7 @@ role chains: http://www.w3.org/2004/02/skos/core#narrower - + @@ -1342,7 +1342,7 @@ role chains: - + @@ -1351,7 +1351,7 @@ role chains: is exact match to http://www.w3.org/2004/02/skos/core#exactMatch - + @@ -1360,7 +1360,7 @@ role chains: is close match to http://www.w3.org/2004/02/skos/core#closeMatch - + @@ -1369,7 +1369,7 @@ role chains: is broad match to http://www.w3.org/2004/02/skos/core#broadMatch - + @@ -1378,7 +1378,7 @@ role chains: is dissimilar to is dissimilar to is a relation between two entities in which one is considered dissimilar to the other based on some criteria. - + @@ -1388,7 +1388,7 @@ role chains: hot is the opposite of cold; left is opposite of right is opposite to is a relation between two entities in which one is diametrically opposed to the other. - + @@ -1398,7 +1398,7 @@ role chains: is version of is version of is a relation that holds between any two versions in which one is a subsequent or alternate version of (through a branch). - + @@ -1408,7 +1408,7 @@ role chains: sadi - + @@ -1416,7 +1416,7 @@ role chains: is parameter in is parameter in is a relation between a data item and some data transformation process. - + @@ -1424,7 +1424,7 @@ role chains: is described by is described by is a relation between one entity and another entity that provides a description (detailed account) of it. - + @@ -1433,7 +1433,7 @@ role chains: is orthologous to is orthologous to is a relation between two biological entities that share a common ancestor and occur in different species. - + @@ -1443,7 +1443,7 @@ role chains: describes is a relation between one entity and another entity that it provides a description (detailed account of). - + @@ -1455,18 +1455,18 @@ role chains: - + refers to - nlp+ core + nlp+ refers to is a relation between one entity and the entity that it makes reference to. - + @@ -1474,7 +1474,7 @@ role chains: is subject of - + @@ -1483,7 +1483,7 @@ role chains: is paralogous to is paralogous to is a relation between two entities which indicates their common ancestry as a result of a gene duplication. - + @@ -1493,7 +1493,7 @@ role chains: mentions references is a relation between one entity and the entity that it makes reference to by name, but is not described by it. - + @@ -1503,14 +1503,14 @@ role chains: the architect builds a model that represents the building she envisions. - + is modelled by - + @@ -1519,7 +1519,7 @@ role chains: is xenologous to a relation between two entities which indicates their common ancestry but due to horizontal gene transfer. - + @@ -1528,14 +1528,14 @@ role chains: has trigger is a relation between a realizable and the factor that causes it to be realized. - + is trigger for - + @@ -1547,7 +1547,7 @@ role chains: - + @@ -1558,7 +1558,7 @@ role chains: - + @@ -1567,7 +1567,7 @@ role chains: is realizable property of - + @@ -1575,7 +1575,7 @@ role chains: has realizable property - + @@ -1585,7 +1585,7 @@ role chains: is capability of is a relation between a capability and the entity that bears it. - + @@ -1594,7 +1594,7 @@ role chains: is directly connected to A is directly connected to B iff there exists a path direclty between A and B. - + @@ -1604,7 +1604,7 @@ role chains: A transitive temporal relation in which an entity mainstains identity from one state to another. - + @@ -1612,7 +1612,7 @@ role chains: immediately transforms into A temporal relation in which an entity mainstains identity from one state to another. - + @@ -1621,7 +1621,7 @@ role chains: is transformed from A transitive temporal relation in which an entity mainstains identity from one state to another. - + @@ -1630,7 +1630,7 @@ role chains: A temporal relation in which an entity mainstains identity from one state to another. - + @@ -1639,7 +1639,7 @@ role chains: core in relation to is a comparative relation to indicate that the instance of the class holding the relation exists in relation to another entity. - + @@ -1649,17 +1649,17 @@ role chains: - + is identifier for - identifies a relation between an identifier and an entity. + identifies - + @@ -1670,7 +1670,7 @@ role chains: - + @@ -1680,7 +1680,7 @@ role chains: is unique identifier for is a relation between an identifier and an entity that it uniquely identifies - + @@ -1690,7 +1690,7 @@ role chains: - + @@ -1699,7 +1699,7 @@ role chains: has start time - + @@ -1709,7 +1709,7 @@ role chains: - + @@ -1718,7 +1718,7 @@ role chains: - + @@ -1726,7 +1726,7 @@ role chains: is end time of - + @@ -1736,7 +1736,7 @@ role chains: exists at is a relation between an entity and a time measurement. - + @@ -1745,7 +1745,7 @@ role chains: is mutual disposition of a is mutual disposition of b if and only if the realization of the disposition a necessarily causes the realization of the disposition b. - + @@ -1754,7 +1754,7 @@ role chains: is greater than or equal to is a comparison relation between two quantities in which the first has a value larger or equal to the second. - + @@ -1763,7 +1763,7 @@ role chains: is mutually related to a is mutually related to b if and only if the realization of the relation of a necessarily causes the realization of a relation to b. - + @@ -1772,7 +1772,7 @@ role chains: is mutual role of a is mutual role of b if and only if the realization of role a necessarily causes the realization of role b. - + @@ -1780,7 +1780,7 @@ role chains: is lesser than or equal to is greater than to is a comparison relation between two quantities in which the first has a value smaller or equal to the second. - + @@ -1788,7 +1788,7 @@ role chains: is greater than is greater than to is a comparison relation between two quantities in which the first has a value larger than the second. - + @@ -1797,7 +1797,7 @@ role chains: is lesser than to is a comparison relation between two quantities in which the first has a value smaller than the second. - + @@ -1807,7 +1807,7 @@ role chains: core is comparable to is a relation between two entities that share at least one feature whose value can be compared. - + @@ -1818,7 +1818,7 @@ role chains: - + @@ -1827,7 +1827,7 @@ role chains: is equal to is equal to is a comparison relation between two quantities whose value are exactly the same. - + @@ -1836,7 +1836,7 @@ role chains: is inequal to is inequal to is a comparison relation between two quantities whose value are not the same. - + @@ -1845,14 +1845,14 @@ role chains: has evidence is a relation between a proposition and something that demonstrates the truth of the assertion. - + is evidence for - + @@ -1860,7 +1860,7 @@ role chains: is refuted by has evidence is a relation between a proposition and something that refutes (is incompatible with) the truth of the assertion. - + @@ -1868,7 +1868,7 @@ role chains: is refuting evidence for - + @@ -1878,7 +1878,7 @@ role chains: measured at is a relation between a measurement value and the time measurement. - + @@ -1887,7 +1887,7 @@ role chains: a in relation from b is a comparative relation in a is the object of reference in a relation with b. - + @@ -1896,7 +1896,7 @@ role chains: has frequency is a relation that specifies the occurence of an object or event - + @@ -1904,7 +1904,7 @@ role chains: is frequency of is frequency of is a relation between a temporal unit and an object or event - + @@ -1912,7 +1912,7 @@ role chains: has substrate has substrate is a relation between a process and an object where the object is destroyed by its participation in the process. - + @@ -1920,7 +1920,7 @@ role chains: is first part of is first part of is a proper part relation in which the part is the first of a set of linearly ordered parts resulting from the projection of the whole on a linear coordinate system. - + @@ -1929,7 +1929,7 @@ role chains: has first part is a proper part relation in which the part is the first of a set of linearly ordered parts resulting from the projection of the whole on a linear coordinate system. - + @@ -1938,7 +1938,7 @@ role chains: has last part is a proper part relation in which the part is the last of a set of linearly ordered parts resulting from the projection of the whole on a linear coordinate system. - + @@ -1946,7 +1946,7 @@ role chains: is last part of is last part of is a proper part relation in which the part is the last of a set of linearly ordered parts resulting from the projection of the whole on a linear coordinate system. - + @@ -1954,7 +1954,7 @@ role chains: has ordered part has ordered part of is a proper part relation in which the part is one of a set of linearly ordered parts resulting from the projection of the whole on a linear coordinate system. - + @@ -1962,7 +1962,7 @@ role chains: is ordered part of is ordered part of is a proper part relation in which the part is one of a set of linearly ordered parts resulting from the projection of the whole on a linear coordinate system. - + @@ -1973,7 +1973,7 @@ role chains: is specialization of is a relation between a more specific instance (in terms of spatial/temporal localization & other attributres) than the other. - + @@ -1981,7 +1981,7 @@ role chains: is generalization of is generalization of is a relation between a more general instance (in terms of spatial/temporal localization & other attributres) than the other. - + @@ -1993,7 +1993,7 @@ role chains: two weather forecasts for the city of London produced at different times or by different organizations (etc) are alternates of each other, and instances of / specializations of forecasts for the city of London. - + @@ -2002,7 +2002,7 @@ role chains: is mutual capability of a is mutual capability of b if and only if the realization of capability a necessarily causes the realization of capability b. - + @@ -2010,7 +2010,7 @@ role chains: regulates x regulates y if and only if x is a process and y is either a process or a quality, and the progression of x exerts an effect on the frequency, rate or extent of y - + @@ -2018,7 +2018,7 @@ role chains: is regulated by - + @@ -2027,21 +2027,21 @@ role chains: - + is result of - + affects - + @@ -2049,7 +2049,7 @@ role chains: is affected by - + @@ -2058,7 +2058,7 @@ role chains: is identical to is identical to is a relation between two objects that are conceptually the same notwithstanding provenance or other non-intrinsic attributes. - + @@ -2068,7 +2068,7 @@ role chains: is transitively related to not included in standard distribution ovopub - + @@ -2079,17 +2079,17 @@ role chains: - + is data item in - 'is data item in' is a relation between an entity that is described or referenced in a dataset. core + 'is data item in' is a relation between an entity that is described or referenced in a dataset. - + @@ -2098,7 +2098,7 @@ role chains: has phenotype is a relation between an object and an observable/measurable characteristic. - + @@ -2106,7 +2106,7 @@ role chains: is phenotype of is phenotype of is a relation between an observable/measurable characteristic and an object. - + @@ -2116,80 +2116,80 @@ role chains: an open reading frame encodes a protein (it contains information that specifies the amino acid composition and topology) - - - + + + - + - + - + - + - - + + - + - + - + - + - + - + - + - + - + - - - + + + - + - - - + + + - + - - + + - + @@ -2200,7 +2200,7 @@ role chains: is encoded by A relation between two objects, in which the first object is produced from the information contained in the second object. - + @@ -2209,48 +2209,48 @@ role chains: DNA is transcribed into RNA a relation between two information content entities in which one is transcribed into (an exact or similar kind) another through some process. - - - + + + - + - + - + - + - - + + - + - + - + - + - + - - + + - + @@ -2261,51 +2261,51 @@ role chains: is transcribed from - - - + + + - + - + - - - + + + - - + + - + - + - + - + - - - + + + - - + + - + - + @@ -2315,26 +2315,26 @@ role chains: a relation between two information content entities in which one is translated into (a completely different kind of entity) another through some process. - - + + - + - + - + - + - - + + - + @@ -2345,26 +2345,26 @@ role chains: is translated from - - + + - + - + - + - + - - + + - + @@ -2376,7 +2376,7 @@ role chains: is homologous to a relation between two entities which indicates their common ancestry. - + @@ -2384,11 +2384,11 @@ role chains: has value nlp - relations core + relations sadi A relation between a informational entity and its actual value (numeric, date, text, etc). - + @@ -2396,42 +2396,42 @@ role chains: entity core Every thing is an entity. - + material entity - - + + core A material entity is a physical entity that is spatially extended, exists as a whole at any point in time and has mass. - + - + - + - + - + - + - + - + - + @@ -2441,14 +2441,14 @@ role chains: quality - + core A quality is an attribute that is intrinsically associated with its bearer (or its parts), but whose presence/absence and observed/measured value may vary. - + - + @@ -2458,21 +2458,21 @@ role chains: process - - - process+ - core + + A process is an entity that is identifiable only through the unfolding of time, has temporal parts, and unless otherwise specified/predicted, cannot be identified from any instant of time in which it exists. - + core + process+ + - + - + @@ -2483,19 +2483,19 @@ role chains: social entity A social entity pertains to the interaction among individuals and groups. - + social structure - + A social structure is a social entity which consists of relationships between two or more entities. - + - + @@ -2506,7 +2506,7 @@ role chains: organization An organization is a collective with a complex articulation of tasks, roles and responsibilities. - + @@ -2514,21 +2514,21 @@ role chains: geographic position A geographic position is the coordinate of an entity against some geographic coordinate system. - + disposition - - core + A disposition is the tendency of a capability to be exhibited under certain conditions or in response to a certain stimulus (trigger). + core solubility (to dissolve when put in fluid); fragility (disposition to break when dropped) - + - + @@ -2538,14 +2538,14 @@ role chains: information content entity - + ice+ core information content entity is an object that requires some background knowledge or procedure to correctly interpret. - + - + @@ -2555,9 +2555,9 @@ role chains: role - A role is a realizable entity that describes behaviours, rights and obligations of an entity in some particular circumstance. core - + A role is a realizable entity that describes behaviours, rights and obligations of an entity in some particular circumstance. + @@ -2567,7 +2567,7 @@ role chains: A function is a capability that satisfies some agentive objective, or (evolutionary) optimization. core - + @@ -2576,20 +2576,20 @@ role chains: A nostril; the interior of the heart valve; the interior of a bottle. A site is a spatial region bounded (in part or in whole) by material entities and may be occupied by material entities. - + material boundary - + A material boundary is the boundary of a material entity which exists as a lower dimensional entity at exactly the location where its parts no longer extend into space. Every material entity has a boundary, and a boundary is the boundary of exactly 1 material entity. the external surface of the window; the surface of the p52 protein - + - + @@ -2599,12 +2599,12 @@ role chains: object quality - + An object quality is quality of an object. - + - + @@ -2614,12 +2614,12 @@ role chains: process quality - + A process quality is quality that is associated with a process. - + - + @@ -2629,47 +2629,47 @@ role chains: biopolymer sequence - - - + + + A sequence is a primary structure descriptor in which each of the letters in the string represents a monomeric unit (residue) in which adjacent letters represent the connectivity between the monomeric units. - + - + - + - + - + - + - + - - + + - + - + - + @@ -2680,7 +2680,7 @@ role chains: start date A start date is a time instant pertaining to the date of the beginning of a process. - + @@ -2688,19 +2688,19 @@ role chains: end date An end date is a time instant pertaining to date of the end of a process. - + process status - + process status is a process quality that describes the state of a process. - + - + @@ -2711,7 +2711,7 @@ role chains: completed completed is that status of a process that successfully unfolds. - + @@ -2719,7 +2719,7 @@ role chains: ongoing ongoing is the status of a process that is not yet complete. - + @@ -2727,30 +2727,30 @@ role chains: predicted predicted is the quality of an entity that is thought to exist, as evidenced by some rational procedure. - + spatial quantity - - + + A spatial quantity is a quantity obtained from measuring the spatial extent of an entity physical dimensional quantity - + - + - - + + - + - - + + @@ -2758,7 +2758,7 @@ role chains: 1D extent quantity A quantity that extends in single dimension. - + @@ -2766,7 +2766,7 @@ role chains: depth depth is the dimensional extent into a plane of a 3D projection of the object. - + @@ -2774,7 +2774,7 @@ role chains: height height is the one dimensional extent along the vertical projection of a 3D object from a base plane of reference. - + @@ -2782,7 +2782,7 @@ role chains: length length is the longer dimensional extent along a 2D projection of the object. - + @@ -2790,7 +2790,7 @@ role chains: width width is the shorter dimensional extent perpendicular to a 2D projection of the object. - + @@ -2798,7 +2798,7 @@ role chains: thickness thickness is the shortest dimensional extent of a 3D projection of an object. - + @@ -2806,7 +2806,7 @@ role chains: 2D extent quantity A quantity that extends in two dimensions. - + @@ -2814,7 +2814,7 @@ role chains: area area is a quantity that pertains to the extent of a two-dimensional surface or shape, or planar lamina, in the plane. - + @@ -2822,7 +2822,7 @@ role chains: length of perimeter A perimeter is a length of the outline that surrounds a two-dimensional shape. - + @@ -2830,7 +2830,7 @@ role chains: circumference circumference is the length of the outline of a circle or ellipse. it is defined as c = 2*pi*r, where r is the radius. - + @@ -2838,7 +2838,7 @@ role chains: 3D extent quantity A quantity that extends in three dimensions. - + @@ -2846,7 +2846,7 @@ role chains: volume volume is the quantity of three-dimensional space enclosed by some closed boundary. - + @@ -2854,42 +2854,42 @@ role chains: compositional quality composition quality is a quality that describes its composition or anatomy. - + quantity - + - - + + A quantity is an informational entity that gives the magnitude of a property. - + - + - + - + - + - + - + - + @@ -2900,19 +2900,19 @@ role chains: shape shape is the quality of a bearer that relates to its spatial extent. - + position - + A measurement of a spatial location relative to a frame of reference or other objects. - + - + @@ -2923,19 +2923,19 @@ role chains: orientation orientation is an angle between the bearer and an axis, or the angle between the bearer and another object. - + namespace - + A namespace is an informational entity that defines a logical container for a set of symbols or identifiers. - + - + @@ -2945,33 +2945,33 @@ role chains: data item - + A data item consists of information that has been collected/generated towards some purpose. - + - + - + - + - + - + - + - - + + - + @@ -2981,55 +2981,55 @@ role chains: measurement value - + A measurement value is a quantitative description that reflects the magnitude of some attribute. - + - + - + - - - + + + - + - - - + + + - + - - - + + + - + - - + + - + @@ -3040,20 +3040,20 @@ role chains: coordinate A coordinate is a measurement of position in n-dimensional space. - + cartesian coordinate - + A Cartesian coordinate is the signed distance of a point to some referent line. - + - + @@ -3063,12 +3063,12 @@ role chains: polar coordinate - + A polar coordinate is a position characterized by a distance from a fixed point and an angle from a fixed direction. - + - + @@ -3079,16 +3079,16 @@ role chains: unit of measurement A unit of measurement is a definite magnitude of a physical quantity, defined and adopted by convention and/or by law, that is used as a standard for measurement of the same physical quantity. - + mathematical entity - math+ A mathematical entity is an information content entity that are components of a mathematical system or can be defined in mathematical terms. - + math+ + @@ -3096,7 +3096,7 @@ role chains: plan A plan is a set of intended actions, through which one expects to achieve a goal. - + @@ -3104,20 +3104,20 @@ role chains: generic name A generic name is the preferred name provided by manufacturer. - + language entity - - A language entity implements some language specification for the visual interpretation and is part of some document. + nlp+ - + A language entity implements some language specification for the visual interpretation and is part of some document. + - + @@ -3128,7 +3128,7 @@ role chains: visual language entity A visual language entity is a language entity that is expressed through physical expression of manual. - + @@ -3138,7 +3138,7 @@ role chains: A figure is a graphical entity which consists of a visual (n-dimentional) arrangement of information entities. diagram - + @@ -3147,7 +3147,7 @@ role chains: An image is an affine projection of a visual entity to a two dimensional surface. depiction - + @@ -3156,7 +3156,7 @@ role chains: A photograph is an image created by light falling on a light-sensitive surface. photo - + @@ -3165,7 +3165,7 @@ role chains: A statistical graph is a figure that displays the relationship among numeric data and/or mathematical functions. chart - + @@ -3173,7 +3173,7 @@ role chains: question A question is a linguistic expression used to make a request for information. - + @@ -3181,19 +3181,19 @@ role chains: publication A publication is a document that has been made available by a publisher. - + record - + A record is a document containing a collection of statements about some entity. - + - + @@ -3202,27 +3202,27 @@ role chains: data set - + A dataset is a data item that is a collection of data items. - + - + - + - + - + - - + + - + @@ -3232,26 +3232,26 @@ role chains: specification - - - + + + A specification is a description of the essential technical attributes/requirements for an object or procedure, and may be used to determine that the object / procedure meets its requirements/attributes. - + - + - - + + - + - - + + - + @@ -3261,68 +3261,68 @@ role chains: action specification - - - - An action specification is a specification composed of a sequence of instructions to achieve some objective. + + + effective specification - + An action specification is a specification composed of a sequence of instructions to achieve some objective. + - + + + + + + + - + - - - - - - biopolymer - + A biopolymer is an organic polymer using biological components. - + - + - + - + - + - + - + - + - + - + - + - + @@ -3332,7 +3332,7 @@ role chains: algorithm An algorithm is an effective method expressed as a finite list of well-defined instructions for calculating a function. - + @@ -3340,7 +3340,7 @@ role chains: software entity A software entity is a computational entity that can be interpreted by or directly executed by a processing unit. - + @@ -3348,7 +3348,7 @@ role chains: software method A software method (also called subroutine, subprogram, procedure, method, function, or routine) is software designed to execute a specific task. - + @@ -3356,7 +3356,7 @@ role chains: software module A software module is software composed of a collection of software methods. - + @@ -3364,7 +3364,7 @@ role chains: software library A software library is software composed of a collection of software modules and/or software methods in a form that can be statically or dynamically linked to some software application. - + @@ -3372,7 +3372,7 @@ role chains: software application A software application is software that can be directly executed by some processing unit. - + @@ -3380,7 +3380,7 @@ role chains: software interpreter A software interpreter is a software application that executes some specified input software. - + @@ -3388,7 +3388,7 @@ role chains: software script A software script is software whose instructions can be executed using a software interpreter. - + @@ -3396,26 +3396,26 @@ role chains: language Language is a language entity which is the result of encoding and decoding information through systematic creation and usage of systems of symbols, each pairing a specific sign with an intended meaning, established through social conventions - + symbol - - + + A symbol is a proposition about what an entity represents. - + - + - + @@ -3426,7 +3426,7 @@ role chains: book A book is a publication composed of a large number of entries. - + @@ -3434,7 +3434,7 @@ role chains: chapter A chapter is a document section of a book or thesis. - + @@ -3442,7 +3442,7 @@ role chains: character A character is a language symbol used to construct words. - + @@ -3450,19 +3450,19 @@ role chains: novel A novel is a fictitious prose narrative of book length, typically representing character and action with some degree of realism. - + paragraph - + A paragraph is a self-contained unit of written discourse consisting of one or more sentences. - + - + @@ -3472,12 +3472,12 @@ role chains: document section - + A document section is a component of a document. - + - + @@ -3487,100 +3487,100 @@ role chains: capability - - - - capability+ - core + + + A capability is a realizable entity whose basis lies in one or more parts or qualities and reflects possility of an entity to act in a specified way under certain conditions or in response to a certain stimulus (trigger). - + core + capability+ + + + + + + + + + + + + + - + - + - + - + - + - + - + - + - - + + - + true - - - - - - - - - - - - sentence A sentence is a grammatical unit consisting of one or more words that bear minimal syntactic relation to the words that precede or follow it. - + word - - + + A word is the smallest free form (an item that may be expressed in isolation with semantic or pragmatic content) in a language. - + - + - - + + - + - - + + identifier - + An identifier is a label that specifically refers to (identifies) an entity (instance/type). - + - + @@ -3590,12 +3590,12 @@ role chains: name - + A name is a label used to identify an entity. - + - + @@ -3606,7 +3606,7 @@ role chains: preferred name A preferred name is the name that is generally used by some organization. - + @@ -3614,7 +3614,7 @@ role chains: common name A common name is a name that is commonly used. - + @@ -3622,7 +3622,7 @@ role chains: brand name A brand name is a trademarked and marketed name of a product. - + @@ -3630,43 +3630,43 @@ role chains: scientific name A scientific name is a name given through scientific nomenclature. - + magazine - http://purl.org/ontology/bibo/Magazine A magazine is a periodical that typically contains essays, stories, poems, etc., by many writers, and often photographs and drawings, frequently specializing in a particular subject or area, as hobbies, news, or sports. - + http://purl.org/ontology/bibo/Magazine + synonym - + A synonym is a word with the same or very similar meanings. - + - + - + - + - + - - + + - + @@ -3675,28 +3675,28 @@ role chains: antonym - + An antonym is a word with opposite or nearly opposite meaning. - + - + - + - + - + - - + + - + @@ -3705,28 +3705,28 @@ role chains: hypernym - + A hypernym is a term with a broader meaning. - + - + - + - + - + - - + + - + @@ -3735,28 +3735,28 @@ role chains: hyponym - + A hyponym is a term with a narrower meaning. - + - + - + - + - + - - + + - + @@ -3766,12 +3766,12 @@ role chains: homonym - + A homonym is a word that sounds the same but has different meaning. - + - + @@ -3782,7 +3782,7 @@ role chains: workflow A workflow is an algorithm that is is a depiction of a sequence of operations to achieve one or more objectives. - + @@ -3790,7 +3790,7 @@ role chains: ontology document An ontology document is a document that contains an ontology. - + @@ -3798,7 +3798,7 @@ role chains: pattern A pattern is a generalized representation of some repeatable concrete or informational item. - + @@ -3807,7 +3807,7 @@ role chains: A sequence motif is a pattern of nucleotides in a DNA sequence or amino acids in a protein. - + @@ -3815,7 +3815,7 @@ role chains: descriptor A descriptor (index term, subject term, subject heading) is a term that captures the essence of the topic of a document. - + @@ -3823,19 +3823,19 @@ role chains: definition A definition is a description that succintly characterizes an entity. - + description - + A description is language entity in which elements of a language (formal or natural) are used to characterize an entity. - + - + @@ -3846,7 +3846,7 @@ role chains: category A category is a class of entities having particular shared characteristics. - + @@ -3854,7 +3854,7 @@ role chains: class A class is a collection of sets which can be unambiguously defined by a property that all its members share. - + @@ -3862,7 +3862,7 @@ role chains: web service A web service is a software application that can be accessed over a network, such as the Internet, and executed on a remote system hosting the requested services. - + @@ -3870,7 +3870,7 @@ role chains: criterion A criterion is a specification to describe properties used for evaluation. - + @@ -3879,7 +3879,7 @@ role chains: An inclusion criterion is a criterion that must be present to satisfy some objective. - + @@ -3887,7 +3887,7 @@ role chains: exclusion criterion An exclusion criterion is a criterion that must be absent to satistify the objective. - + @@ -3895,19 +3895,19 @@ role chains: parameter A parameter is variable whose value changes the characteristics of a system or a function. - + monomer - + A monomer is a submolecule that is proper part of some polymer, and is a building block for such polymer. - + - + @@ -3918,7 +3918,7 @@ role chains: keyword A keyword is a descriptor in which the association of the word with the entity facilitates information retrieval. - + @@ -3926,19 +3926,19 @@ role chains: document A document is a bounded physical or digital representation of a body of information designed with the capacity (and usually intent) to communicate. - + list - + A list is any enumeration of a set of items. - + - + @@ -3949,7 +3949,7 @@ role chains: manuscript A manuscript is a document prior to publication. - + @@ -3957,7 +3957,7 @@ role chains: note A note is a brief document. - + @@ -3965,7 +3965,7 @@ role chains: patent A patent is an information entity granted by a patent issuing authority which confers upon the patenter the sole right to make, use and sell an invention for a set period of time. - + @@ -3973,7 +3973,7 @@ role chains: article An article is a publication that is stand-alone section of a larger work. - + @@ -3981,7 +3981,7 @@ role chains: blog A blog is a publication accessible at some website and is typically about various experiences. - + @@ -3989,7 +3989,7 @@ role chains: book volume A book volume is a book that is part of a collection. - + @@ -3997,7 +3997,7 @@ role chains: conference proceedings A conference proceedings is a book composed of papers presented at a conference. - + @@ -4005,7 +4005,7 @@ role chains: book series A book series is a collection of books that have been sequentially published. - + @@ -4013,7 +4013,7 @@ role chains: edited publication An edited publication is a publication that has been examined and potentially changed by an editor. - + @@ -4022,7 +4022,7 @@ role chains: http://purl.org/ontology/bibo/Journal A journal is a a peer-reviewed periodical in which scholarship relating to a particular academic discipline is published. - + @@ -4030,7 +4030,7 @@ role chains: manual A manual is a document that instructs on the usage of a device. - + @@ -4039,7 +4039,7 @@ role chains: A periodical is a publication that appears on a regular schedule. http://purl.org/ontology/bibo/Periodical - + @@ -4048,7 +4048,7 @@ role chains: A newspaper is a periodical publication containing news regarding current events, informative articles, diverse features, editorials, and advertising. http://purl.org/ontology/bibo/Newspaper - + @@ -4056,7 +4056,7 @@ role chains: technical report A technical report is a publication published by a school or other institution, usually numbered within a series. - + @@ -4064,7 +4064,7 @@ role chains: thesis document A thesis document is the written research component of a post-secondary institution that contains a statement supported by arguments. - + @@ -4072,7 +4072,7 @@ role chains: honor's thesis An honor's thesis is a thesis prepared as a requirement for an honor's undergraduate degree. - + @@ -4080,7 +4080,7 @@ role chains: master's thesis A Master's thesis is a thesis prepared as a requirement for a Master's degree. - + @@ -4088,7 +4088,7 @@ role chains: phd thesis A PhD thesis is a thesis prepared as a requirement for a doctoral degree. - + @@ -4096,7 +4096,7 @@ role chains: booklet A booklet is a document that lacks a named publisher or sponsoring institution. - + @@ -4104,7 +4104,7 @@ role chains: diary A diary is a document which describes day-to-day experiences. - + @@ -4112,7 +4112,7 @@ role chains: document component A bibliographic attribute is an attribute related to publications. - + @@ -4120,7 +4120,7 @@ role chains: address An address is a position that indicates the physical location of some entity using a social convention. - + @@ -4128,7 +4128,7 @@ role chains: affiliation An affiliation is a social relation which indicates the partnership between two or more entities. - + @@ -4136,7 +4136,7 @@ role chains: citation A citation is a textual entity which denotes a source described in the bibliography or reference section of a document. - + @@ -4144,7 +4144,7 @@ role chains: document title A document title is a textual entity that summarizes the topic of the document in one sentence. - + @@ -4152,7 +4152,7 @@ role chains: reference A reference is a textual entity that describes a single source used in the preparation or development of the work. - + @@ -4160,7 +4160,7 @@ role chains: page range A page range denotes the start and end page in some document. - + @@ -4168,7 +4168,7 @@ role chains: page total A page total is a textual entity that is about the number of pages in some informational entity. - + @@ -4177,7 +4177,7 @@ role chains: a label is a term that is associated with some entity - + @@ -4185,7 +4185,7 @@ role chains: language label A language label is a label that denotes the language of a textual entity. - + @@ -4193,7 +4193,7 @@ role chains: first name A first name is a name that denotes a specific individual between members of a group of individuals, whose members usually share the same surname. - + @@ -4201,16 +4201,16 @@ role chains: last name A last name (surname) is a name added to a given name and is part of a personal name and is often the family name. - + personal name - full name A personal name is a name to identify an individual person and usually comprises of a first name and a last name. - + full name + @@ -4218,7 +4218,7 @@ role chains: legal name A legal name is a name given at birth, or which appears on their birth certificate, marriage certificate, or change of name certificate. - + @@ -4226,7 +4226,7 @@ role chains: title A title is a textual entity that summarily describes some entity. - + @@ -4234,7 +4234,7 @@ role chains: document version A document version is a version of a work in some sequence of derivative works. - + @@ -4242,7 +4242,7 @@ role chains: abstract section An abstract section is a document section that provides brief summary of a document that explains the main argument(s), topic(s) or findings. - + @@ -4250,7 +4250,7 @@ role chains: acknowledgements section An acknowledgements section is a document section that identifies individuals, groups or organizations for their support in the development of the work. - + @@ -4258,7 +4258,7 @@ role chains: author contribution section An author contribution section is a document section that describes the contribution of the authors. - + @@ -4266,7 +4266,7 @@ role chains: author section An author section is a document section that lists the contributing authors. - + @@ -4274,7 +4274,7 @@ role chains: bibliography section A bibliography section is a document section that is composed of a list of references used in the development of the work. - + @@ -4282,7 +4282,7 @@ role chains: copyright section A copyright section is a document section that contains a notice of copyright. - + @@ -4290,7 +4290,7 @@ role chains: correspondence section A correspondence section is a document section that contains the details for contacting the corresponding author. - + @@ -4298,7 +4298,7 @@ role chains: discussion section The discussion section is a document section containing a summary of the findings, a reflection on the significance of findings, comparison with related work, among others. - + @@ -4306,7 +4306,7 @@ role chains: introduction section An introduction section is a document section that generally provides background, motivation and goals of the work. - + @@ -4314,7 +4314,7 @@ role chains: materials and methods section The materials and methods section is a document section containing a description of the materials and methods used in the study. - + @@ -4322,7 +4322,7 @@ role chains: materials section The materials section is a document section containing a description of the materials used in the study. - + @@ -4330,7 +4330,7 @@ role chains: methods section The methods section is a document section containing a description of the methods used in the study. - + @@ -4338,7 +4338,7 @@ role chains: results section The results section is a document section describing the main findings of the study. - + @@ -4346,7 +4346,7 @@ role chains: table of contents The table of contents is a document section that lists all sections (and optionally subsections) in a sequential order along with their page number. - + @@ -4354,7 +4354,7 @@ role chains: implies (->) Implication is a logical operator that holds between a set T of propositions and a proposition B, when every model (or interpretation or valuation) of T is also a model of B. - + @@ -4362,7 +4362,7 @@ role chains: namespace label A namespace label is a short name for a namespace. - + @@ -4370,7 +4370,7 @@ role chains: logical operator A logical operator is a unary or binary relation to construct logical expressions. - + @@ -4378,47 +4378,47 @@ role chains: conjunction (and) AND is a logical operator that has the value true if both of its operands are true, otherwise a value of false. - + proposition - - + + A proposition is a sentence expressing something true or false. - + - + - - + + - + - - + + dimensionless quantity - + A dimensionless quantity is a quantity that has no associated unit. - + - + - + - + @@ -4428,12 +4428,12 @@ role chains: dimensional quantity - + A dimensional quantity is a quantity that has an associated unit. - + - + @@ -4443,33 +4443,33 @@ role chains: argument - + An argument is a set of one or more declarative sentences (or propositions) known as the premises along with another declarative sentence (or proposition) known as the conclusion. - + - + - + - - - + + + - + - - + + - + @@ -4480,7 +4480,7 @@ role chains: premise A premise is a proposition of an argument from which the conclusion is drawn. - + @@ -4488,7 +4488,7 @@ role chains: conclusion A conclusion is a proposition which is reached after considering the evidence, arguments or premises. - + @@ -4496,7 +4496,7 @@ role chains: deductive argument A deductive argument is an argument that asserts that the truth of the conclusion is a logical consequence of the premises. - + @@ -4504,40 +4504,40 @@ role chains: inductive argument An inductive argument is an argument that asserts that the truth of the conclusion is supported by the premises. - + sound argument - + A sound argument is a valid argument with true premises. - + - + - + - + - + - + - + - - + + - + @@ -4547,33 +4547,33 @@ role chains: valid argument - + A valid argument is an argument where the truth of the conclusion is a logical consequence of the premises and (consequently) its corresponding conditional is a necessary truth. - + - + - + - + - + - + - + - - + + - + @@ -4583,33 +4583,33 @@ role chains: invalid argument - + An invalid argument is an argument where the truth of the conclusion is false because it is not a logical consequence of the premises. - + - + - + - + - + - + - + - - + + - + @@ -4618,23 +4618,23 @@ role chains: truth value - + truth value is a quality of information that is claimed/verified to be true or false. - + - + - + - + - + - + @@ -4643,13 +4643,13 @@ role chains: true - + true is a truth value that indicates that it holds under all possible worlds. - + - + true @@ -4659,12 +4659,12 @@ role chains: false - + false is a truth value in that indicates that it is not true. - + - + false @@ -4674,22 +4674,22 @@ role chains: term - + A term is a word or phrase used to denote one or more entities. - + - + - + - + - + - + @@ -4698,21 +4698,21 @@ role chains: emotion - An emotion is a process (experience) that arises internally or from an involuntary physiological response to a stimulus. emotion++ - + An emotion is a process (experience) that arises internally or from an involuntary physiological response to a stimulus. + mass - + mass is the quality of the amount of substance. - + - + @@ -4723,7 +4723,7 @@ role chains: disjunction (or) OR is a logical operator that results in true whenever one or more of its operands are true. - + @@ -4731,7 +4731,7 @@ role chains: negation (not) NOT is a logical operator in that has the value true if its operand is false. - + @@ -4739,7 +4739,7 @@ role chains: exclusive disjunction (xor) XOR, also called exclusive disjunction or (symbolized XOR, EOR, EXOR, or ⊕), is a type of logical disjunction on two operands that results in a value of true if exactly one of the operands has a value of true. - + @@ -4747,7 +4747,7 @@ role chains: hypothesis A hypothesis is a proposed explanation for a phenomenon. - + @@ -4755,7 +4755,7 @@ role chains: academic organization An academic organization is a lawfully recognized organization that confers diplomas, degrees and other forms of recognition of academic achievement. - + @@ -4763,19 +4763,19 @@ role chains: social relation A social relation is a social entity that describes a relationship between two or more individuals or groups. - + set - + A set is a collection of entities, for which there may be zero members. - + - + @@ -4786,20 +4786,20 @@ role chains: university A university is an institution of higher education and research which grants academic degrees in a variety of subjects and provides both undergraduate education and postgraduate education. - + collection of documents - - http://purl.org/ontology/bibo/Collection + A collection of documents is a non-zero set of documents. - + http://purl.org/ontology/bibo/Collection + - + @@ -4810,12 +4810,12 @@ role chains: website - + A website is a collection of documents published on the World Wide Web. - + - + @@ -4828,19 +4828,19 @@ role chains: A movie is a series of images that are displayed in rapid succession to give the impression of movement. film moving pictures - + excerpt - + An excerpt is a contiguous or discontiguous portion of a document. - + - + @@ -4850,12 +4850,12 @@ role chains: quote - + A quote is a excerpt that is attributed to a particular source. - + - + @@ -4866,7 +4866,7 @@ role chains: geographic image A geographic image is a photograph of some geographical area. - + @@ -4874,7 +4874,7 @@ role chains: web page A web page is a document that is published according to World Wide Web standards. - + @@ -4882,7 +4882,7 @@ role chains: email Email message is a digital document that is composed of a header and a body and is transmitted using the SMTP protocol. - + @@ -4890,7 +4890,7 @@ role chains: process number process number is a number associated with a process that denotes its ordinal position in a set of processes. - + @@ -4898,29 +4898,29 @@ role chains: letter A letter is a document that contains a personal communication from one part to another. - + normality - + normality is the quality in which the value may differ from normal or average - + - + - + - + - + - + @@ -4930,7 +4930,7 @@ role chains: edition number An edition number is count of a literary work edited and published, as by a certain editor or in a certain manner including being printed during some interval of time. - + @@ -4938,19 +4938,19 @@ role chains: volume number volume number is a count of a sequence of periodicals. - + polymer - + A polymer is a molecule composed of a connected set of monomeric residues. - + - + @@ -4960,28 +4960,28 @@ role chains: functional specification - + A functional specification is a specification that describes the characteristics of an object. - + - + - + - + - + - + - + - + @@ -4991,7 +4991,7 @@ role chains: design specification A design specification is a specification that provides precise and explicit information about the requirements for a product design. - + @@ -4999,7 +4999,7 @@ role chains: spatial specification A specification for spatial location is an effective specification towards representation spatial position or spatial data. - + @@ -5008,7 +5008,7 @@ role chains: Longitude is a geographic position that refers to the angle east or west of a reference meridian between the two geographical poles to another meridian that passes through an arbitrary point. - + @@ -5016,7 +5016,7 @@ role chains: latitude Latitude is a geographic coordinate which refers to the angle from a point on the Earth's surface to the equatorial plane - + @@ -5024,7 +5024,7 @@ role chains: coordinate system A coordinate system is a specification for spatial location that uses a set of numbers, or coordinates, to uniquely determine the position of a point or other geometric element. - + @@ -5032,7 +5032,7 @@ role chains: cartesian coordinate system A Cartesian coordinate system specifies each point uniquely in a plane by a pair of numerical coordinates, which are the signed distances from the point to two fixed perpendicular directed lines, measured in the same unit of length. - + @@ -5040,7 +5040,7 @@ role chains: concept A concept is term that refers to a generalization of a set of attributes or entities. - + @@ -5048,19 +5048,19 @@ role chains: polar coordinate system A polar coordinate system is a two-dimensional coordinate system in which each point on a plane is determined by a distance from a fixed point and an angle from a fixed direction. - + positional identifier - + A positional description is a description of location using some system or frame of reference. - + - + @@ -5071,7 +5071,7 @@ role chains: cylindrical coordinate system A cylindrical coordinate system is a three-dimensional coordinate system that specifies point positions by the distance from a chosen reference axis, the direction from the axis relative to a chosen reference direction, and the distance from a chosen reference plane perpendicular to the axis. - + @@ -5079,7 +5079,7 @@ role chains: spherical coordinate system A spherical coordinate system is a coordinate system for three-dimensional space where the position of a point is specified by three numbers: the radial distance of that point from a fixed origin, its polar angle measured from a fixed zenith direction, and the azimuth angle of its orthogonal projection on a reference plane that passes through the origin and is orthogonal to the zenith, measured from a fixed reference direction on that plane. - + @@ -5087,53 +5087,53 @@ role chains: OWL ontology An OWL ontology is an ontology as specified by the W3C OWL specification. - + 3D cartesian coordinate - + A 3D cartesian coordinate is a coordinate that is composed of an x, y and z coordinate. - + - + - + - - - + + + - + 1 - - - + + + - + 1 - - + + - + @@ -5144,19 +5144,19 @@ role chains: objective - - + + An objective is a proposition that indicates a planned or anticipated outcome. - + - + - + @@ -5166,20 +5166,20 @@ role chains: realizable entity - - + + A realizable entity is an attribute that is exhibited under some condition and is realized in some process. core - + - + - + @@ -5188,27 +5188,27 @@ role chains: term variant - + A term variant is a term that is a variant of another term. - + - + - + - + - + - - + + - + @@ -5219,7 +5219,7 @@ role chains: to modify to modify is the capability to change some entity. - + @@ -5228,7 +5228,7 @@ role chains: http://purl.obolibrary.org/obo/OBI_0000368 to record is the capability to detect and transcribe information in a specified format on some physical medium. - + @@ -5236,7 +5236,7 @@ role chains: to magnify to magnify is the capability to increase the appearance of the size of an object. - + @@ -5244,7 +5244,7 @@ role chains: to heat to heat is a capability to increase the internal kinetic energy of a material. - + @@ -5253,7 +5253,7 @@ role chains: http://purl.obolibrary.org/obo/OBI_0000387 to cool is the capability to decrease the internal kinetic energy of a material. - + @@ -5262,7 +5262,7 @@ role chains: http://purl.obolibrary.org/obo/OBI_0000375 to freeze is the capability to decrease the internal kinetic energy of a material such that it changes state from a gas or liquid to a solid. - + @@ -5270,7 +5270,7 @@ role chains: to separate to separate is the capability to i) distinguish some entities based on some attribute(s) and ii) subsequently physically displace them. - + @@ -5278,7 +5278,7 @@ role chains: to ionize to ionize is the capability to physically convert an atom or molecule into an ion by adding or removing charged particles such as electrons or other ions. - + @@ -5286,7 +5286,7 @@ role chains: to supply energy to supply energy is the capability to transfer energy from a source to a sink. - + @@ -5294,7 +5294,7 @@ role chains: to observe to observe is the capability to watch attentively. - + @@ -5302,7 +5302,7 @@ role chains: dysfunction dysfunction is a capability to act in a manner that is abnormal or opposite to the object's typical function. - + @@ -5310,7 +5310,7 @@ role chains: fitness fitness is the quality of an object with respect to some stated functions or evolutionary adaptation. - + @@ -5318,7 +5318,7 @@ role chains: intent intent is a desire to realize a particular outcome. - + @@ -5326,40 +5326,40 @@ role chains: purpose purpose is the reason for which something is done or created or for which something exists. - + belief - + A belief is a proposition that is believed to be true. - + - + - + - + - + - + - + - - + + - + @@ -5370,7 +5370,7 @@ role chains: number A number is a mathematical object used to count, label, and measure. - + @@ -5378,7 +5378,7 @@ role chains: variable A variable is a value that may change within the scope of a given problem or set of operations. - + @@ -5386,21 +5386,21 @@ role chains: equation An equation is a mathematical statement that asserts the equality of two expressions. - + spatial region - + + region A spatial region is an object contained in some region of space. The airspace above Ottawa airport; the band around the northern hemisphere between 50 degrees N and 60 degrees N; the spatial region occupied by a bottle. - region - + - + @@ -5411,7 +5411,7 @@ role chains: to measure to measure is the capability to obtain information about some entity by examining its attributes in relation to some reference metric. - + @@ -5419,7 +5419,7 @@ role chains: to inject to inject is the capability to administer a substance into some object through its external barrier. - + @@ -5427,7 +5427,7 @@ role chains: to boil to boil is the capability to increase the internal kinetic energy of a material such that it changes state from a solid or liquid to a gas. - + @@ -5435,7 +5435,7 @@ role chains: to reduce energy to reduce energy is the capability to remove energy from a source. - + @@ -5443,7 +5443,7 @@ role chains: to supply electricity to supply electricity is the capability to transfer electricity from a source to a sink. - + @@ -5451,7 +5451,7 @@ role chains: to change materially to change appearance is the capability to change the material composition of an object. - + @@ -5459,7 +5459,7 @@ role chains: to demagnify to demagnify is the capability to decrease the appearance of the size of an object. - + @@ -5467,7 +5467,7 @@ role chains: to change appearance to change appearance is the capability to change the visual attributes of an object. - + @@ -5475,7 +5475,7 @@ role chains: perception perception is the organization, identification, and interpretation of sensory information in order to fabricate a mental representation through the process of transduction, which sensors in the body transform signals from the environment into encoded neural signals. - + @@ -5483,7 +5483,7 @@ role chains: to contain to contain is the capability to bound or constrain a physical entity in some site. - + @@ -5491,7 +5491,7 @@ role chains: to immobilize to immobilize is the capability to contain an entity in such a way that it may not move in space. - + @@ -5499,7 +5499,7 @@ role chains: to filter to filter is the capability to retain certain entities based on selected attribute(s) while allowing other entities to pass through. - + @@ -5507,7 +5507,7 @@ role chains: to excite to excite is the capability to supply energy to a materila by bombarding it with energetic particles (e.g., photons). - + @@ -5515,7 +5515,7 @@ role chains: to emit to emit is the capability to release some physical entity (light, pollution, etc). - + @@ -5523,7 +5523,7 @@ role chains: to change energetically to change energetically is the capability to change the energetic aspects of an object. - + @@ -5531,7 +5531,7 @@ role chains: to positively charge to positively charge is the capability to remove an electron or add a positively charged ion to a chemical entity. - + @@ -5539,7 +5539,7 @@ role chains: to negatively charge to negatively charge is the capability to add an electron or negatively charged ion to a chemical entity. - + @@ -5547,7 +5547,7 @@ role chains: to assemble to assemble is the capability to combine entities together into a larger object that persists in time. - + @@ -5555,7 +5555,7 @@ role chains: to extract to extract is the capability to remove certain entities based on selected attribute(s) while allowing other entities to remain. - + @@ -5563,21 +5563,21 @@ role chains: to transport to transport is the capability to displace a material from one location to another. - + time measurement - + Time intervals are specified as date/datetime ranges. the duration of my life; the duration of a surgical procedure, the moment of death time measurement is a measurement value of the duration of some interval of time or a particular instant of time (against some frame of reference). - + - + @@ -5588,19 +5588,19 @@ role chains: to change spatially to change spatially is the capability to affect the physical movement of some entity. - + patient - + A patient is an individual that is the recepient of medical care. - + - + @@ -5610,12 +5610,12 @@ role chains: doctor - + A doctor is an individual who practices medicine, which is concerned with promoting, maintaining or restoring human health through the study, diagnosis, and treatment of disease, injury, and other physical and mental impairments. - + - + @@ -5627,7 +5627,7 @@ role chains: to modulate to regulate is to control or maintain the rate or speed of an object or process. - + @@ -5635,7 +5635,7 @@ role chains: file A file is an information-bearing object that contains a physical embodiment of some information using a particular character encoding. - + @@ -5643,19 +5643,19 @@ role chains: to provide to provide is the capability to make available some object to another that requires it. - + nurse - + A nurse is an individual that is involved in the protection, promotion, and optimization of health and abilities, prevention of illness and injury, alleviation of suffering through the diagnosis and treatment of human response, and advocacy in the care of individuals, families, communities, and populations. - + - + @@ -5666,7 +5666,7 @@ role chains: study subject A study subject is an individual that is the subject of the study. - + @@ -5674,7 +5674,7 @@ role chains: x cartesian coordinate An x cartesian coordinate is the coordinate of an object onto the x-axis of a cartesian coordinate system. - + @@ -5682,7 +5682,7 @@ role chains: y cartesian coordinate An y cartesian coordinate is the coordinate of an object onto the y-axis of a cartesian coordinate system. - + @@ -5690,7 +5690,7 @@ role chains: z cartesian coordinate A z cartesian coordinate is the coordinate of an object onto the z-axis of a cartesian coordinate system. - + @@ -5698,7 +5698,7 @@ role chains: study group A study group is a group of individuals that are subjects in an observational or intervention study. - + @@ -5706,7 +5706,7 @@ role chains: professor A professor is an individual that is a scholarly teacher. - + @@ -5714,7 +5714,7 @@ role chains: student A student is an individual who is attends an educational institution. - + @@ -5722,7 +5722,7 @@ role chains: academic An academic is an individual that participates in education and scholarship. - + @@ -5730,7 +5730,7 @@ role chains: to increase the rate of formation to increase the rate of formation is to regulate the rate of formation in a manner that increases this rate relative to a reference process. - + @@ -5738,7 +5738,7 @@ role chains: to investigate to investigate is the capability to uncover facts. - + @@ -5746,7 +5746,7 @@ role chains: mutual disposition A mutual disposition is a disposition that simulataneously invokes another disposition when realized. - + @@ -5754,7 +5754,7 @@ role chains: anger anger is disgust directed toward an equal status individual. - + @@ -5762,7 +5762,7 @@ role chains: hate Hate is a deep and emotional extreme dislike, directed against a certain object or class of objects. - + @@ -5770,7 +5770,7 @@ role chains: love love is an emotion of a strong affection and personal attachment. - + @@ -5779,7 +5779,7 @@ role chains: A geolegal region is a geographic region which has causal powers confered by a legal entity. The 50 kph zones in Ottawa; the geographic region occupied by France. - + @@ -5788,7 +5788,7 @@ role chains: A geographic region is a spatial region whose boundaries are typically defined against some material frame of reference (like the earth). The spatial region occupied by the province of ontario; the spatial region occupied by a lake. - + @@ -5797,7 +5797,7 @@ role chains: The geographic region bounded by Canada; the spatial region occupied by the US embassy in Ottawa. a geopolitical region is a geographic region recognized by social or legal convention. - + @@ -5805,7 +5805,7 @@ role chains: time interval A time internval is a contiguous temporal region having some duration. - + @@ -5814,7 +5814,7 @@ role chains: A time instant is a temporal region which occurs instantaneously, e.g. having no duration. at this moment; the moment at which a finger is detached in an industrial accident; the moment at which a child is born; the moment of death - + @@ -5822,7 +5822,7 @@ role chains: table A table is a figure that consists of an ordered arrangement of columns and rows. - + @@ -5833,7 +5833,7 @@ role chains: scatter chart scatter diagram scatter graph - + @@ -5841,7 +5841,7 @@ role chains: year A year is a period of time taken by a planet to make one revolution around the sun. - + @@ -5849,7 +5849,7 @@ role chains: month A month is a period of time that divides the year. - + @@ -5857,7 +5857,7 @@ role chains: day A day is a period of 24 hours. - + @@ -5865,7 +5865,7 @@ role chains: century A century is a period of one hundred years. - + @@ -5873,7 +5873,7 @@ role chains: millenium A millenium is a period of 1000 years - + @@ -5881,7 +5881,7 @@ role chains: hour An hour is a period of 60 minutes. - + @@ -5889,7 +5889,7 @@ role chains: minute A minute is a period of 60 seconds. - + @@ -5897,19 +5897,19 @@ role chains: second A second (symbol: s) is the base unit of time in the International System of Units (SI) and is the second division of the hour by sixty, the first division by 60 being the minute. - + informational quality - + An informational quality is a quality that pertains to information. - + - + @@ -5918,65 +5918,65 @@ role chains: 2D cartesian point - + A 2D cartesian point is a point whose position is specified along two dimensions using Cartesian coordinates. - + - + - + - + - + - - - + + + - + - + - + - + - + - + - + - - - + + + - + 1 - - + + - + @@ -5988,7 +5988,7 @@ role chains: altitude Altitude is a distance above sea level. - + @@ -5996,57 +5996,57 @@ role chains: center of mass The center of mass (aka barycenter) is the weighted average location of all the mass in a body or group of bodies. - + 3D cartesian point - + A 3D cartesian point is a point whose position is specified along three dimensions using Cartesian coordinates. - + - + - + - + - + - - - + + + - + 1 - - - + + + - + 1 - - + + - + @@ -6056,38 +6056,38 @@ role chains: 1D cartesian point - + A 1D cartesian point is a point whose position is specified along a single dimension using Cartesian coordinates. - + - + - + - + - + - - - + + + - + - - + + - + @@ -6101,7 +6101,7 @@ role chains: A line graph is a statistical graph in which lines contains the evaluation of functions or individual points connected by line segments. Graph 1 in http://tinyurl.com/opwnvm line chart - + @@ -6110,7 +6110,7 @@ role chains: A bar graph is a statistical graph with rectangular bars of lengths proportional to that value that they represent. Graphs 3,4,5 in http://tinyurl.com/opwnvm - + @@ -6119,7 +6119,7 @@ role chains: A horizontal bar graph is a bar graph in which the rectangular bars are horizontally oriented in space. Graph 3 in http://tinyurl.com/opwnvm - + @@ -6128,7 +6128,7 @@ role chains: A vertical bar graph is a bar graph in which the rectangular bars are vertically oriented in space. Graph 4,5 in http://tinyurl.com/opwnvm - + @@ -6137,7 +6137,7 @@ role chains: A stacked bar graph is a bar graph in which each rectangular bar is partioned by the categorical value of each series of data. Graphs 6,7 in http://tinyurl.com/opwnvm - + @@ -6146,19 +6146,19 @@ role chains: A line-bar graph statistical graph that contains both lines and bars. Graph 8 in http://tinyurl.com/opwnvm - + figure part - + A figure part is a part of a figure. - + - + @@ -6172,23 +6172,23 @@ role chains: A plot is a part of a figure that corresponds to the spatial region between the set of axes. The square portion of the chart bounded by lines that overlap with the two axes in Graph 1 of http://tinyurl.com/opwnvm - + axis - + An axis is a line segment that is part of a statistical graph in which the position along the line corresponds to a numeric or categorical value. The left vertical and bottom horizontal lines with tickmarks in Graph 1 http://tinyurl.com/opwnvm The value of a plotted geometric objects (e.g. point) can be obtained from the perpendicular projection of the position of the object onto the axis. Axis may also be associated with a textual description of what the values on the axis represents. - + - + @@ -6198,12 +6198,12 @@ Graph 1 http://tinyurl.com/opwnvm Cartesian coordinate axis - + A Cartesian coordinate axis is an axis whose behavior follows that of a Cartesian coordinate system. - + - + @@ -6215,20 +6215,20 @@ Graph 1 http://tinyurl.com/opwnvm + horizontal axis An x-axis is a Cartesian coordinate axis that is aligned with the horizon. In most figures, this axis represents categories, such as months, market segments, or other non-numeric data. The horizontal axis in http://tinyurl.com/opwnvm - horizontal axis - + y-axis - vertical axis A y-axis is a Cartesian coordinate axis that is spatially oriented perpendicular to the x-axis. - + vertical axis + @@ -6236,32 +6236,32 @@ Graph 1 http://tinyurl.com/opwnvm z-axis A z-axis is a Cartesian coordinate axis that is spatially oriented normal to the plane formed by the x- and y-axes. - + category axis - + A category axis is an axis in which the position along the line is partioned into categories. The horizontal axis corresponding to months of the year in graph 4 of http://tinyurl.com/opwnvm - + - + - + - + - + - + @@ -6274,7 +6274,7 @@ of http://tinyurl.com/opwnvm A primary category axis is a category axis that either defines the sole value range or holds the larger set of categorical values specified by the secondary category axis. The category axis that corresponds to years in Graph 1 of http://tinyurl.com/opwnvm - + @@ -6284,42 +6284,42 @@ http://tinyurl.com/opwnvm A secondary category axis is a category axis that defines a finer granular part (or subset) of the value range of the primary category axis. The category axis that corresponds to months in Graph 1 of http://tinyurl.com/opwnvm - + value axis - + A value axis holds the properties of having a minimum and a maximum value, and is usually associated with tickmarks that indicate intervals along the axis. A value axis is an axis in which the position along the line is partioned into numeric values. The value axis that ranges from 3.0 to 7.4 and corresponds to billions of dollars in Graph 1 of http://tinyurl.com/opwnvm - + - + - + - + - + - + - + - + - + - + @@ -6330,7 +6330,7 @@ billions of dollars in Graph 1 of http://tinyurl.com/opwnvm A left value axis is a value axis that is spatially positioned to the left of the plot area. The value axis that ranges from 3.0 to 7.4 and corresponds to billions of dollars in Graph 1 of http://tinyurl.com/opwnvm - + @@ -6338,7 +6338,7 @@ billions of dollars in Graph 1 of http://tinyurl.com/opwnvm right value axis A right value axis is a value axis that is spatially positioned to the right of the plot area. - + @@ -6346,7 +6346,7 @@ billions of dollars in Graph 1 of http://tinyurl.com/opwnvm scaled value axis A scaled value axis is a value axis in which the value range was subject to a mathematic transformation. - + @@ -6355,7 +6355,7 @@ billions of dollars in Graph 1 of http://tinyurl.com/opwnvm A linear value axis is a value axis that corresponds to a scaling factor of 1 of the value range. - + @@ -6363,7 +6363,7 @@ billions of dollars in Graph 1 of http://tinyurl.com/opwnvm logarithmic value axis A logarithmic value axis is a scaled value axis that corresponds to a scaling factor of the logarithm of the value range. - + @@ -6372,19 +6372,19 @@ billions of dollars in Graph 1 of http://tinyurl.com/opwnvm A data series is a data set composed of related values displayed in a statistical graph. Example: The two series that correspond to "Seasonally adjusted" and "Trend" are composed of the seasonally adjusted value of permits in each month and values from a trend derived from some mathematical tranformation across those values, respectively, in Graph 1 of http://tinyurl.com/opwnvm - + data point - + A data point is a point that which corresponds to the projection of the values of measurement data against the axes of a statistical graph. - + - + @@ -6395,7 +6395,7 @@ billions of dollars in Graph 1 of http://tinyurl.com/opwnvm global maximal stationary point A global maximum stationary point is a data point that corresponds to a measurement value is larger than that of all other plotted datapoints. - + @@ -6403,7 +6403,7 @@ billions of dollars in Graph 1 of http://tinyurl.com/opwnvm global minimal stationary point A global minimum data point is a data point that corresponds to a measurement value is smaller than that of all other plotted datapoints. - + @@ -6413,34 +6413,34 @@ billions of dollars in Graph 1 of http://tinyurl.com/opwnvm A legend is a part of a figure that associates textual descriptions with symbols pertaining to plotted entities. The colored line segments and the adjacent textual descriptions in Graph 1 of http://tinyurl.com/opwnvm - + graph title - + A graph title is a title that describes a graph. Total value of permits increased slightly in December" in Graph 1 of http://tinyurl.com/opwnvm - + - + - + - + - + - - + + - + @@ -6451,7 +6451,7 @@ Graph 1 of http://tinyurl.com/opwnvm primary title A primary title is a title that should be first used in describing some entity. - + @@ -6460,7 +6460,7 @@ Graph 1 of http://tinyurl.com/opwnvm A secondary title is a title of lesser importance that should be used after the first title in describing some entity. subtitle, alternative title - + @@ -6468,20 +6468,20 @@ Graph 1 of http://tinyurl.com/opwnvm scientific data scientific data is data obtained from some scientific procedure. - + primary graph title - + "Total value of permits increased slightly in December" in Graph 1 of http://tinyurl.com/opwnvm A primary graph title is a primary title that describes a statistical graph. - + - + @@ -6491,12 +6491,12 @@ Graph 1 of http://tinyurl.com/opwnvm secondary graph title - + A secondary graph title is a secondary title that describes a statistical graph. - + - + @@ -6507,19 +6507,19 @@ Graph 1 of http://tinyurl.com/opwnvm biological quality A biological quality is a quality held by a biological entity. - + cellular quality - + cellular quality is the quality of a cell - + - + @@ -6530,7 +6530,7 @@ Graph 1 of http://tinyurl.com/opwnvm sequence variant role A sequence variant role is a comparative role in which the composition of characters in a sequence differs when compared to another entity of similar type. - + @@ -6538,7 +6538,7 @@ Graph 1 of http://tinyurl.com/opwnvm variant role A variant role is a comparative role in which the value of an attribute differs when compared to another entity - + @@ -6546,7 +6546,7 @@ Graph 1 of http://tinyurl.com/opwnvm insertion variant role An insertion variant role is the role of an sequence that contains a sub-sequence that is considered to be an addition relative to the frame of reference. - + @@ -6554,19 +6554,19 @@ Graph 1 of http://tinyurl.com/opwnvm deletion variant role A deletion variant role is the role of an sequence that lacks a sub-sequence relative to the frame of reference. - + phrase - + A phrase is a group of words functioning as a single unit in the syntax of a sentence. - + - + @@ -6578,7 +6578,7 @@ Graph 1 of http://tinyurl.com/opwnvm human A human is a primates of the family Hominidae and are characterized by having a large brain relative to body size, with a well developed neocortex, prefrontal cortex and temporal lobes, making them capable of abstract reasoning, language, introspection, problem solving and culture through social learning. - + @@ -6586,7 +6586,7 @@ Graph 1 of http://tinyurl.com/opwnvm mouse A mouse is a small mammal belonging to the order of rodents, characteristically having a pointed snout, small rounded ears, and a long naked or almost hairless tail. - + @@ -6594,7 +6594,7 @@ Graph 1 of http://tinyurl.com/opwnvm rat A rat is a medium-sized, long-tailed rodent of the superfamily Muroidea. - + @@ -6602,7 +6602,7 @@ Graph 1 of http://tinyurl.com/opwnvm worm A worm is a non-arthropod invertebrate animal that typically have a long cylindrical tube-like body and no legs. - + @@ -6610,7 +6610,7 @@ Graph 1 of http://tinyurl.com/opwnvm e.coli Escherichia coli (e coli) is a Gram-negative, rod-shaped bacterium that is commonly found in the lower intestine of warm-blooded organisms. - + @@ -6618,7 +6618,7 @@ Graph 1 of http://tinyurl.com/opwnvm to consume to consume is the capability to internalize a material entity. - + @@ -6626,7 +6626,7 @@ Graph 1 of http://tinyurl.com/opwnvm clause A clause consists of a subject and a predicate. - + @@ -6634,7 +6634,7 @@ Graph 1 of http://tinyurl.com/opwnvm to actively interact with to actively interact with is the capability to interact with another entity in a way that requires physical contact. - + @@ -6642,7 +6642,7 @@ Graph 1 of http://tinyurl.com/opwnvm person A person is a being that has certain capacities or attributes constituting personhood. - + @@ -6650,50 +6650,50 @@ Graph 1 of http://tinyurl.com/opwnvm to decrease the rate of formation to decrease the rate of formation is to regulate the rate of formation in a manner that decreases this rate relative to a reference process. - + polygon vertex - - + + A polygon vertex is a terminal point at which two polygon edges meet and are part of a polygon. - + - - - - - 1 - - - + 2 + + + + + 1 + + polygon edge - - + + A polygon edge is a line segment joining two polygon vertices. - + - + - + @@ -6704,12 +6704,12 @@ Graph 1 of http://tinyurl.com/opwnvm polyhedral skeleton - + A polyhedral skeleton is a collection of polygon edges. - + - + @@ -6719,12 +6719,12 @@ Graph 1 of http://tinyurl.com/opwnvm polygonal face - + A polygonal face is a polygon bounded by a circuit of polygon edges, and includes the flat (plane) region inside the boundary. - + - + @@ -6734,12 +6734,12 @@ Graph 1 of http://tinyurl.com/opwnvm polyhedral surface - + A polyhedral surface is composed of polygonal faces. - + - + @@ -6750,16 +6750,16 @@ Graph 1 of http://tinyurl.com/opwnvm polygon A polygon is a planar entity that is bounded by a closed path or circuit, composed of a finite connected sequence3 of straight line segments. - + geometric entity - A geometric entity is an information content entity that pertains to the structure and topology of a space. geometry+ - + A geometric entity is an information content entity that pertains to the structure and topology of a space. + @@ -6767,7 +6767,7 @@ Graph 1 of http://tinyurl.com/opwnvm point A point is a geometric entity that is located in a zero-dimensional spatial region and whose position is defined by its coordinates in some coordinate system. - + @@ -6776,7 +6776,7 @@ Graph 1 of http://tinyurl.com/opwnvm An endpoint is a terminal point that is the last of an ordered pair of points. - + @@ -6785,19 +6785,19 @@ pair of points. A start point is a terminal point which is the first of an ordered pair of points. - + model - + A model is a representation of some thing. - + - + @@ -6806,28 +6806,28 @@ pair of points. line - + A line is curve that extends in a single dimension (e.g. straight line; exhibits no curvature), and is composed of at least two fully connected points. - + - + - + - + - + - + - + - + @@ -6836,12 +6836,12 @@ pair of points. line segment - + A line segment is a line and a part of a curve that is (inclusively) bounded by two terminal points. - + - + @@ -6853,7 +6853,7 @@ pair of points. tick mark A tick mark is a line segment that is spatially positioned perpendicular to the axis of a statistical graph and indicates the position of a specific numeric value (which may be indicated by an adjacent value label) on a value axis, or is one of a pair of tick marks that delineates the boundary of a categorical value (which may be indicated by an adjacent category label) on the categorical axis. - + @@ -6861,7 +6861,7 @@ pair of points. major tick mark A major tick mark is a tick mark that indicates the position of a specific numeric value and is adjacent to its value label on the value axis, or is one of a pair of tick marks that delineates the boundary of a categorical value indicated by an adjacent category label on the categorical axis. - + @@ -6869,7 +6869,7 @@ pair of points. minor tick mark A minor tick mark is a tick mark that indicates the position of a specific numeric value but has no adjacent value label, or is one of a pair of tick marks that delineates the boundary of a categorical value but has no adjacent category label on the categorical axis. - + @@ -6877,7 +6877,7 @@ pair of points. ray A ray is a line which that is bounded by a startpoint and extends outwards infinitely along one dimension. - + @@ -6885,7 +6885,7 @@ pair of points. quadrilateral A quadrilateral is a polygon with composed of four points and four line segments, in which each point is fully connected to two other points. - + @@ -6893,7 +6893,7 @@ pair of points. rectangle A rectangle is a quadrilateral in which one pair of line segments are parallel and the other pair are perpendicular to the first pair. - + @@ -6901,7 +6901,7 @@ pair of points. bar A bar is a rectangle that is located in the plot of a statistical graph in which its length is proportional to the values that it represents. - + @@ -6909,31 +6909,31 @@ pair of points. triangle A triangle is a polygon composed of three points and three line segments, in which each point is fully connected to another point along through the line segment. - + directed line segment - - + + A directed line segment is a line segment that is contained by an ordered pair of endpoints (a start point and an endpoint). - + - + - + 1 - + - + 1 @@ -6941,36 +6941,36 @@ of endpoints (a start point and an endpoint). arrowed line segment - - + + An arrowed line is a directed line segment in which one or both endpoints is tangentially part of a triangle that bisects the line. - - - - - - - + - + 2 + + + + + + single arrowed line segment - + A single arrowed line is directed line in which the endpoint is tangentially part of a triangle that bisects the line. - + - + @@ -6981,12 +6981,12 @@ of endpoints (a start point and an endpoint). double arrowed line segment - + A double arrowed line is an arrowed line in which both terminal points are tangentially part of different triangles that bisect the line. - + - + @@ -6998,7 +6998,7 @@ of endpoints (a start point and an endpoint). horizontal line A horizontal line is a line that is positionally oriented with the horizon. - + @@ -7006,7 +7006,7 @@ of endpoints (a start point and an endpoint). vertical line A vertical line is a line that is positionally oriented perpendicular to the horizon. - + @@ -7014,7 +7014,7 @@ of endpoints (a start point and an endpoint). trend line A trend line is a line, line segment or ray that is part of a statistical graph which indicates a statistical or visual direction across categorical or value data. - + @@ -7022,7 +7022,7 @@ of endpoints (a start point and an endpoint). increasing line An increasing line is a line segment in which the startpoint and endpoint are ordered along one dimension and the difference of values in a second dimension is positive. - + @@ -7030,7 +7030,7 @@ of endpoints (a start point and an endpoint). decreasing line An decreasing line is a line segment in which the startpoint and endpoint are ordered along one dimension and the difference of values in a second dimension is negative. - + @@ -7038,7 +7038,7 @@ of endpoints (a start point and an endpoint). plateau line An plateau line is a line segment in which the startpoint and endpoint are ordered along one dimension and the difference of values in a second dimension is zero. - + @@ -7046,7 +7046,7 @@ of endpoints (a start point and an endpoint). drop line A drop line is a statistical graph line that vertically or horizontally connects a data series line with a value axis in a statistical graph. - + @@ -7054,7 +7054,7 @@ of endpoints (a start point and an endpoint). terminal point A terminal point is a point that defines the finite extension of a line. - + @@ -7062,7 +7062,7 @@ of endpoints (a start point and an endpoint). surface normal A surface normal is a vector that is perpendicular to a flat surface. - + @@ -7070,7 +7070,7 @@ of endpoints (a start point and an endpoint). positionally oriented line A positionally oriented line is a line that is positioned against some axis of reference. - + @@ -7078,7 +7078,7 @@ of endpoints (a start point and an endpoint). statistical graph line A statistical graph line is a line used in a statistical graph to communicate some trend or feature of the embedded data. - + @@ -7086,7 +7086,7 @@ of endpoints (a start point and an endpoint). to regulate the rate of formation to regulate the rate of formation is to modify the rate at which an object is formed. - + @@ -7094,7 +7094,7 @@ of endpoints (a start point and an endpoint). curvature curvature is a quality of a bearer that relates to the presence of curves, bends, or angles. - + @@ -7103,7 +7103,7 @@ of endpoints (a start point and an endpoint). PATO:0002180 [for material entities] straight is a quality of a bearer that is free of curves, bends, or angles. - + @@ -7111,7 +7111,7 @@ of endpoints (a start point and an endpoint). infinite line An infinite line is a line that extends outwards in both directions of a single dimensional and is not bounded by terminal points. - + @@ -7119,7 +7119,7 @@ of endpoints (a start point and an endpoint). vector A vector is a line which that is bounded by a startpoint and extends outwards along one dimension. - + @@ -7127,7 +7127,7 @@ of endpoints (a start point and an endpoint). vertex normal A vertext normal is the normalized average of the surface normals of the faces that contain that vertex. - + @@ -7135,19 +7135,19 @@ of endpoints (a start point and an endpoint). to serve as to serve as is the capability to act in a manner corresponding to some role. - + to serve as a host - + to serve as host is the capability to act in a manner that provides hospitality, serves to harbour an organism in or on itself. - + - + @@ -7158,20 +7158,20 @@ of endpoints (a start point and an endpoint). to infect to infect is the capability to administer a disease-causing organism into some object. - + polyline - + A polyline is a connected sequence of line segments. polygonal chain, polygonal curve, polygonal path, piecewise linear curve - + - + @@ -7183,12 +7183,12 @@ of endpoints (a start point and an endpoint). collection of points - + A collection of points is a geometric entity that contains a non-zero set of geometric points. - + - + @@ -7199,7 +7199,7 @@ of endpoints (a start point and an endpoint). to cause disease to cause disease is the capability to materially change a biological object in that it functions abnormally. - + @@ -7209,16 +7209,16 @@ of endpoints (a start point and an endpoint). to activate to reduce the activation energy is to require a smaller amount of energy in order to form or break a chemical bond. - + to increase the activation energy - to inhibit to increase the activation energy is to require a larger amount of energy in order to form or break a chemical bond. - + to inhibit + @@ -7226,7 +7226,7 @@ of endpoints (a start point and an endpoint). to change the activation energy to change the activation energy is to change the amount of energy required to form or break a chemical bond. - + @@ -7234,9 +7234,9 @@ of endpoints (a start point and an endpoint). normal - A quality that has a value that is normal or average. PATO:0000461 - + A quality that has a value that is normal or average. + @@ -7244,7 +7244,7 @@ of endpoints (a start point and an endpoint). abnormal A quality that has a value that is outside normal or average. - + @@ -7252,29 +7252,29 @@ of endpoints (a start point and an endpoint). lipid residue A lipid residue is a part of an organic molecule that was derived from a lipid molecule. - + chemical synthesis - - + + chemical synthesis is synthesis of a chemical entity from physical precursors through one or more chemical interactions or reactions. - + - + - - + + - + - - + + @@ -7282,7 +7282,7 @@ of endpoints (a start point and an endpoint). molecular orbitral A molecular orbital (or MO) is a mathematical function describing the wave-like behavior of an electron in a molecule. - + @@ -7291,7 +7291,7 @@ of endpoints (a start point and an endpoint). passive transport is the movement of a substance across a membrane and does not require chemical energy. - + @@ -7299,19 +7299,19 @@ of endpoints (a start point and an endpoint). diffusion diffusion is motion of particles at temperatures above absolute zero. - + diffusion equation - + A diffusion equation describes density fluctuations in a material undergoing diffusion. - + - + @@ -7322,7 +7322,7 @@ of endpoints (a start point and an endpoint). movement equation A movement equation describes the displacement of an object in space over time. - + @@ -7330,7 +7330,7 @@ of endpoints (a start point and an endpoint). ordinary differential equation An ordinary differential equation (ODE) is a differential equation in which the unknown function (also known as the dependent variable) is a function of a single independent variable. - + @@ -7338,7 +7338,7 @@ of endpoints (a start point and an endpoint). partial differential equation A partial differential equation (PDE) is a differential equation in which the unknown function is a function of multiple independent variables and the equation involves its partial derivatives. - + @@ -7346,7 +7346,7 @@ of endpoints (a start point and an endpoint). differential equation A differential equation is a mathematical equation for an unknown function of one or several variables that relates the values of the function itself and its derivatives of various orders. - + @@ -7355,7 +7355,7 @@ of endpoints (a start point and an endpoint). core movement is the process in which an object is spatially displaced. - + @@ -7363,7 +7363,7 @@ of endpoints (a start point and an endpoint). brownian motion Brownian motion is the seemlingly random movement of particles suspended in a fluid. - + @@ -7371,7 +7371,7 @@ of endpoints (a start point and an endpoint). osmosis osmosis is the movement of water molecules through a selectively-permeable membrane down a water potential gradient. - + @@ -7379,7 +7379,7 @@ of endpoints (a start point and an endpoint). passive movement passive movement is the process in which an object is spatially displaced without an expenditure of energy contained in molecular bonds. - + @@ -7387,40 +7387,40 @@ of endpoints (a start point and an endpoint). active movement active movement is the process in which an object is spatially displaced using some chemical energy. - + transporting - + transporting is a process in which one object physically moves another object from one location to another. - + - + - + - - - + + + - + - - + + - + @@ -7431,7 +7431,7 @@ of endpoints (a start point and an endpoint). membrane transport membrane transport is the movement of molecules across a membrane. - + @@ -7440,7 +7440,7 @@ of endpoints (a start point and an endpoint). primary active transport, also called direct active transport, directly uses energy to transport molecules across a membrane. - + @@ -7448,7 +7448,7 @@ of endpoints (a start point and an endpoint). secondary active transport secondary active transport or co-transport uses electrochemical potential difference created by pumping ions out of the cell to transport molecules across a membrane. - + @@ -7457,7 +7457,7 @@ of endpoints (a start point and an endpoint). symport enabled secondary active transport is a secondary active transfort in which both ion and molecule are transported in the same direction simultaneously. - + @@ -7465,7 +7465,7 @@ of endpoints (a start point and an endpoint). antiport enabled secondary active transport antiport enabled secondary active transport is a secondary active transfort in which both ion and molecule are transported in opposite directions simultaneously. - + @@ -7474,19 +7474,19 @@ of endpoints (a start point and an endpoint). GO:0040011 The self-propelled movement of an object. - + birthing - + brirthing is the process by which a biological organism is brought into existence. - + - + @@ -7496,12 +7496,12 @@ of endpoints (a start point and an endpoint). dying - + dying is a process in which a biological entity ceases to exist. - + - + @@ -7512,7 +7512,7 @@ of endpoints (a start point and an endpoint). idea An idea is a proposition about some object of conceptual thought. - + @@ -7520,24 +7520,24 @@ of endpoints (a start point and an endpoint). biological reproduction biological reproduction is the biological process by which one or more biological organisms are produced from their "parents". - + creating - + + development + production creation synthesis - production - development formulation creating is the process in which an entity comes into existence. - + - + @@ -7546,29 +7546,29 @@ of endpoints (a start point and an endpoint). regulating - + regulating is a process that modulates the attributes of an object or process. regulation - + - + - + - + - + - + - + - + @@ -7578,20 +7578,20 @@ of endpoints (a start point and an endpoint). biosynthesis biosynthesis is the synthesis of an organic compound in a living organism, usually aided by enzymes. - + destroying - + destroying is a process in which something is broken down and/or ceases to exist. destruction - + - + @@ -7601,12 +7601,12 @@ of endpoints (a start point and an endpoint). chemical destruction - + chemical destruction is destruction of a chemical entity to its chemical constituents through one ormore chemical interactions or reactions. - + - + @@ -7616,43 +7616,43 @@ of endpoints (a start point and an endpoint). interacting - - + + core interacting is a process characterized by the interaction between two or more entities. - + - + - + - - - + + + - + 2 - - + + - + 2 - + @@ -7662,21 +7662,21 @@ of endpoints (a start point and an endpoint). data transformation - - + + data transformation is the process of applying an algorithmic procedure to some input data and producing some output data. - + - + - + - + - + @@ -7684,12 +7684,12 @@ of endpoints (a start point and an endpoint). parameterized data transformation - + A parameterized data transformation is a data transformation whose behaviour may be modified by one or more parameters. - + - + @@ -7700,7 +7700,7 @@ of endpoints (a start point and an endpoint). data storage device A data storage device is a device that is capable of storing information. - + @@ -7708,7 +7708,7 @@ of endpoints (a start point and an endpoint). solid state hard drive A solid-state drive (SSD) is a data storage device that uses solid-state memory to store persistent data. - + @@ -7716,7 +7716,7 @@ of endpoints (a start point and an endpoint). hard disk drive A hard disk drive (HDD) is a non-volatile, random access device for digital data. It features rotating rigid platters on a motor-driven spindle within a protective enclosure. Data is magnetically read and written on the platter by read/write heads that float on a film of air above the platters. - + @@ -7724,7 +7724,7 @@ of endpoints (a start point and an endpoint). structure structure is the specification that refers to the composition and arrangement of parts of an object. - + @@ -7732,7 +7732,7 @@ of endpoints (a start point and an endpoint). computational entity A computational entity is an information content entity operated on using some computational system. - + @@ -7740,7 +7740,7 @@ of endpoints (a start point and an endpoint). sound wave A sound wave is a mechanical wave that is an oscillation of pressure transmitted through a solid, liquid, or gas, composed of frequencies within the range of hearing. - + @@ -7748,45 +7748,45 @@ of endpoints (a start point and an endpoint). curve A curve is a geometric entity that may be located in n-dimensional spatial region whose extension may be n-dimensional, is composed of at least two fully connected points and does not intersect itself. - + regulation of process - + - + regulation of a process is a process that modulates the duration, frequency, spatial extent of a target process. - + - + - + - + - + - + - + - + - + - + - + @@ -7796,12 +7796,12 @@ of endpoints (a start point and an endpoint). regulation of capability - + regulation of capability is the regulation of the ability of one party by another. - + - + @@ -7811,12 +7811,12 @@ of endpoints (a start point and an endpoint). regulation of catalytic capability - + the regulation of the enzymatic activity. - + - + @@ -7825,35 +7825,35 @@ of endpoints (a start point and an endpoint). representation - + - + A representation is a entity that in some way represents another entity (or attribute thereof). - + - + - + - + - + - - + + - + - + @@ -7865,20 +7865,20 @@ of endpoints (a start point and an endpoint). A ordinal position is a number that designates the position of an entity from the first entity in an ordered sequence of entities. offset - + attribute - + An attribute is a characteristic of some entity. core - + - + @@ -7888,12 +7888,12 @@ of endpoints (a start point and an endpoint). collection - + A collection is a set for which there exists at least one member, although any member need not to exist at any point in the collection's existence. - + - + @@ -7903,12 +7903,12 @@ of endpoints (a start point and an endpoint). empty set - + An empty set is a set for which there are exactly 0 members. - + - + @@ -7919,12 +7919,12 @@ of endpoints (a start point and an endpoint). standard - + A standard is a socially-agreed upon specification. - + - + @@ -7935,16 +7935,16 @@ of endpoints (a start point and an endpoint). regulatory authority A regulatory authority is an organization responsible for exercising regulatory or supervisory capacity in some area of human activity. - + collective - group A collective is a group of entities that share or are motivated by at least one common issue or interest, or work together on a specific project(s) to achieve a common objective. - + group + @@ -7952,7 +7952,7 @@ of endpoints (a start point and an endpoint). formal specification A formal specification is a mathematical description of software or hardware that may be used to develop an implementation. - + @@ -7960,7 +7960,7 @@ of endpoints (a start point and an endpoint). RDFS ontology An RDFS ontology is an ontology that conforms to the syntax and semantics of the Resource Description Framework Schema (RDFS). - + @@ -7968,7 +7968,7 @@ of endpoints (a start point and an endpoint). OBO ontology An OBO ontology is an ontology document as specified by the Open Biological Ontology community. - + @@ -7976,7 +7976,7 @@ of endpoints (a start point and an endpoint). chemical functional group A chemical functional group is a covalently connected part of a molecule which normally confer specific chemical properties. - + @@ -7984,7 +7984,7 @@ of endpoints (a start point and an endpoint). chemical structure chemical structure is the structure of a chemical entity in terms of its molecular geometry and electronic structure. - + @@ -7993,7 +7993,7 @@ of endpoints (a start point and an endpoint). molecular geometry molecular structure is the spatial arrangement of atoms in a molecule and the chemical bonds that hold the atoms together. - + @@ -8001,7 +8001,7 @@ of endpoints (a start point and an endpoint). probability measure A probability measure is quantity of how likely it is that some event will occur. - + @@ -8009,7 +8009,7 @@ of endpoints (a start point and an endpoint). to passively interact with to passively interact with is the capability to interact with another entity in a way that does not require physical contact. - + @@ -8017,22 +8017,22 @@ of endpoints (a start point and an endpoint). increased - A quality that has a value that is increased compared to normal or average. PATO:0002300 - + A quality that has a value that is increased compared to normal or average. + process model - + A process model is a representation of some process. - + - + @@ -8043,7 +8043,7 @@ of endpoints (a start point and an endpoint). object model An object model is a representation of an object. - + @@ -8051,7 +8051,7 @@ of endpoints (a start point and an endpoint). information processing information processing is a process that involves the generation or use of information. - + @@ -8059,7 +8059,7 @@ of endpoints (a start point and an endpoint). wave A wave is a physical entity that travels through space and time, consist of oscillations or vibrations and may be accompanied by the transfer of energy. - + @@ -8067,25 +8067,25 @@ of endpoints (a start point and an endpoint). textual entity A textual entity is language entity that is manifested as one or more distinct characters. - + version label - + A version label is a label for a particular form or variation of an earlier or original type. - + - + - + - + @@ -8095,13 +8095,13 @@ of endpoints (a start point and an endpoint). software version label - + A software version label is a version label for a piece of software. major.minor[.build[.revision]] - + - + @@ -8112,19 +8112,19 @@ of endpoints (a start point and an endpoint). hole A hole is a site that is opening into or through something. - + province - + A province is a territorial unit, almost always an administrative division, within a country or state. - + - + @@ -8135,7 +8135,7 @@ of endpoints (a start point and an endpoint). state A state is a set of governing and supportive institutions that have sovereignty over a definite territory and population. - + @@ -8143,7 +8143,7 @@ of endpoints (a start point and an endpoint). territory A territory is a non-sovereign geographic region. - + @@ -8151,7 +8151,7 @@ of endpoints (a start point and an endpoint). country A country is a region legally identified as a distinct entity in political geography. - + @@ -8159,7 +8159,7 @@ of endpoints (a start point and an endpoint). city A city is a relatively large and permanent settlement. - + @@ -8167,7 +8167,7 @@ of endpoints (a start point and an endpoint). township A township is a rural or sub-urban settlement. - + @@ -8175,7 +8175,7 @@ of endpoints (a start point and an endpoint). sofware execution software execution is the process of executing software on a computing device. - + @@ -8183,7 +8183,7 @@ of endpoints (a start point and an endpoint). start time A start time is a time instant pertaining to the time at which a process begins. - + @@ -8191,41 +8191,41 @@ of endpoints (a start point and an endpoint). end time An end time is a time instant pertaining to the time at which a process ends. - + unique identifier - + - + A unique identifier is an identifier that uniquely identifies some thing. - + - + - + - + - + - - + + - + - + @@ -8236,7 +8236,7 @@ of endpoints (a start point and an endpoint). social role A social role is a role that is ascribed to individuals in a community. - + @@ -8244,7 +8244,7 @@ of endpoints (a start point and an endpoint). processual role A processual role is a role that can only be realized in a process. - + @@ -8252,7 +8252,7 @@ of endpoints (a start point and an endpoint). abstract role An abstract role is a role whose basis lies in spatial/temporal or comparative relations. - + @@ -8260,7 +8260,7 @@ of endpoints (a start point and an endpoint). justification A justification is a proposition that defends, explains or excuses some argument. - + @@ -8268,7 +8268,7 @@ of endpoints (a start point and an endpoint). academic department An academic department is a division of a university or school faculty devoted to a particular academic discipline. - + @@ -8276,7 +8276,7 @@ of endpoints (a start point and an endpoint). institute institute is a society or organization having a object or common factor, and is normally applied to those with a scientific, educational, or social objective. - + @@ -8284,7 +8284,7 @@ of endpoints (a start point and an endpoint). to be a part of to be a part of is the capability to be assembled into a larger structure that persists in time. - + @@ -8292,20 +8292,20 @@ of endpoints (a start point and an endpoint). to associate to associate is the capability to physically interact with another object. - + to be actively interacted with - + to be actively interacted with is the capability to be manipulated by some device or agent. - + - + @@ -8316,19 +8316,19 @@ of endpoints (a start point and an endpoint). corporation A corporation is an organization that is granted a charter recognizing it as a separate legal entity. - + to be passively interacted with - + to be passively interacted with is the capability of an object to be observed. - + - + @@ -8338,12 +8338,12 @@ of endpoints (a start point and an endpoint). to be recorded - + to be recorded is the capability of an object to be observed in such a way that information about it can be transcribed in a specified format on some physical medium. - + - + @@ -8353,12 +8353,12 @@ of endpoints (a start point and an endpoint). to be observed - + to be observed is the capability of an object to be perceived. - + - + @@ -8369,7 +8369,7 @@ of endpoints (a start point and an endpoint). to disassemble to disassemble is to physically separate the parts of an object. - + @@ -8377,26 +8377,26 @@ of endpoints (a start point and an endpoint). to disassociate to disassociate is to cease or break association with some thing. - + to interact with - - + + to interact with is a capabililty that involves another object. - + - + - + @@ -8406,19 +8406,19 @@ of endpoints (a start point and an endpoint). to be interacted with - - + + to be interacted with is the capability of an object to be target of a physical interaction. - + - + - + @@ -8428,12 +8428,12 @@ of endpoints (a start point and an endpoint). evolving - + evolving is a process that elicits change across successive generations in the inherited characteristics of biological populations. - + - + @@ -8445,7 +8445,7 @@ of endpoints (a start point and an endpoint). A positional role is an abstract role which holds by comparing position to another object of reference. - + @@ -8453,7 +8453,7 @@ of endpoints (a start point and an endpoint). design A specification of an object, manifested by an agent, intended to accomplish goals, in a particular environment, using a set of primitive components, satisfying a set of requirements, subject to constraints. - + @@ -8461,20 +8461,20 @@ of endpoints (a start point and an endpoint). occupational role An occupational role is a social role that pertains to an organizational structure. - + student role - + A student role is the role of an individual that is enrolled in courses at an academic institution. - + - + @@ -8484,19 +8484,19 @@ of endpoints (a start point and an endpoint). professor role - - + + A professor role is the role of an individual that is involved in teaching of students (undergraduate and/or graduate) at a post-secondary academic institution. - + - + - + @@ -8507,7 +8507,7 @@ of endpoints (a start point and an endpoint). academic role An academic role is a social role that pertains to the academic institution. - + @@ -8515,7 +8515,7 @@ of endpoints (a start point and an endpoint). medical role A medical role is the role of an individual that is a participant in the delivery of medical care. - + @@ -8524,7 +8524,7 @@ of endpoints (a start point and an endpoint). A doctor role is the role of an individual who practices medicine, which is concerned with promoting, maintaining or restoring human health through the study, diagnosis, and treatment of disease, injury, and other physical and mental impairments. physician - + @@ -8532,7 +8532,7 @@ of endpoints (a start point and an endpoint). nurse role A nurse role is the role of an individual that is involved in the protection, promotion, and optimization of health and abilities, prevention of illness and injury, alleviation of suffering through the diagnosis and treatment of human response, and advocacy in the care of individuals, families, communities, and populations. - + @@ -8540,7 +8540,7 @@ of endpoints (a start point and an endpoint). patient role A patient role is the role of an individual that is the recepient of medical care. - + @@ -8548,7 +8548,7 @@ of endpoints (a start point and an endpoint). medical practitioner A medical practioner is an individual that provides medical care. - + @@ -8556,21 +8556,21 @@ of endpoints (a start point and an endpoint). dentist role A dentist role is the role of an individual that that specializes in the diagnosis, prevention, and treatment of diseases and conditions of the oral cavity. - + to translocate - + to move to translocate is the capability to displace oneself from one location to another. - + - + @@ -8580,13 +8580,13 @@ of endpoints (a start point and an endpoint). to be translocated - + to be moved to be translocated is the capability to be physically displaced from one location to another - + - + @@ -8597,7 +8597,7 @@ of endpoints (a start point and an endpoint). comparative role A comparative role is an abstract role which holds by comparing some attribute of another object of reference. - + @@ -8605,7 +8605,7 @@ of endpoints (a start point and an endpoint). to be compared to be compared is the capability of an object to be examined in order to note the similarities or differences among a set of objects. - + @@ -8613,7 +8613,7 @@ of endpoints (a start point and an endpoint). to compare to compare is the capability to examine in order to note the similarities or differences among a set of objects. - + @@ -8621,7 +8621,7 @@ of endpoints (a start point and an endpoint). to examine to examine is the capability to make detailed observation. - + @@ -8629,7 +8629,7 @@ of endpoints (a start point and an endpoint). to be examined to be examined is the capability of an object to be observed in a detailed manner. - + @@ -8637,7 +8637,7 @@ of endpoints (a start point and an endpoint). administrative role An administrative role is the role of an individual that performs administrative tasks for some organization. - + @@ -8645,7 +8645,7 @@ of endpoints (a start point and an endpoint). secretary role A secretary role is the role of an individual that performs administrative tasks to support one or more individuals of the same organization. - + @@ -8653,19 +8653,19 @@ of endpoints (a start point and an endpoint). chemical identifier A chemical identifier is an identifier for a chemical entity - + record identifier - + A record identifier is an identifier for a database entry. - + - + @@ -8676,7 +8676,7 @@ of endpoints (a start point and an endpoint). physical entity identifier A physical entity identifier is an identifier for a physical entity. - + @@ -8684,7 +8684,7 @@ of endpoints (a start point and an endpoint). informational entity identifier An informational entity identifier is an identifier for an informational entity. - + @@ -8692,35 +8692,35 @@ of endpoints (a start point and an endpoint). molecular identifier A molecular identifier is an identifier for a molecular entity. - + planning - + planning is the agentive process of developing a plan that specifies a set of actions in order to meet a set of goals or objectives. - + - + - + - + - + - + - + - + @@ -8730,7 +8730,7 @@ of endpoints (a start point and an endpoint). curve segment A curve segment is a part of a curve that consists of at least three points. - + @@ -8738,7 +8738,7 @@ of endpoints (a start point and an endpoint). stationary point A stationary point is a point that is part of a curve in which the derivative at that point is zero, and hence its value is at least a local maximum or minimum. - + @@ -8746,7 +8746,7 @@ of endpoints (a start point and an endpoint). local maximum stationary point A local maximum stationary point is a point that has a higher value in some axis than adjacent points. - + @@ -8754,19 +8754,19 @@ of endpoints (a start point and an endpoint). local minimum stationary point A local minimum stationary point is a point that has a lower value in some axis than adjacent points. - + learning - + learning is the agentive process of acquiring knowledge. - + - + @@ -8776,34 +8776,34 @@ of endpoints (a start point and an endpoint). comparing - - comparison + comparing is the process of examining a set of objects and determining their equality or inequality based on one or more features. - + comparison + - + - + - - - + + + - + - - + + - + @@ -8813,33 +8813,33 @@ of endpoints (a start point and an endpoint). reasoning - + reasoning is the agentive process of using knowledge to evaluate the truth value of a proposition. - + - + - + - + - + - + - + - - + + - + @@ -8849,35 +8849,35 @@ of endpoints (a start point and an endpoint). investigation - - - study + + investigation is the process of carrying out a plan or procedure so as to discover facts or information about the object of study. - + study + - + - - + + - + - - + + predicting - + predicting is the process of formulating a proposition about a state of affairs which might be realized in the future. - + - + @@ -8888,7 +8888,7 @@ of endpoints (a start point and an endpoint). database A database is a set of tables. - + @@ -8897,26 +8897,26 @@ of endpoints (a start point and an endpoint). PATO:0002301 A quality that has a value that is decreased compared to normal or average. - + row - - + + A row represents a single, implicitly structured data item in a table. - + - + - + @@ -8926,51 +8926,51 @@ of endpoints (a start point and an endpoint). column - - + + A column is a vertical sequence of cells in a cellular automata. - + - + - + - + - + - + - + - - - + + + - + - - + + - + - + @@ -8981,12 +8981,12 @@ of endpoints (a start point and an endpoint). database table - + A database table is a set of named columns with zero or more rows composed of cells that contain column values and is part of a database. - + - + @@ -8996,12 +8996,12 @@ of endpoints (a start point and an endpoint). cell (informational) - + The minimal unit of a cellular automaton that can change state and has an associated behavior. - + - + @@ -9011,13 +9011,13 @@ of endpoints (a start point and an endpoint). database entry - + A database entry is a single, implicitly structured data item in a table. database record - + - + @@ -9027,12 +9027,12 @@ of endpoints (a start point and an endpoint). database column - + A database collumn is a column in a database table. - + - + @@ -9042,34 +9042,34 @@ of endpoints (a start point and an endpoint). disordered - + disordered is a structural quality in which the parts of an object are non-rigid. - + - + - + - + - + - + - + - - + + - + @@ -9079,12 +9079,12 @@ of endpoints (a start point and an endpoint). unique cell - + A unique cell is a cell that contains a unique value in the cellular automaton. - + - + @@ -9095,19 +9095,19 @@ of endpoints (a start point and an endpoint). referencing cell A referenceing cell is a cell of a cellular automata that refers to another cell. - + referent cell - + A referent cell is a cell that is the referent of some function or pointer. - + - + @@ -9117,19 +9117,19 @@ of endpoints (a start point and an endpoint). database key - - + + A database key is an informational entity whose value is constructed from one or more database columns. - + - + - + @@ -9139,39 +9139,39 @@ of endpoints (a start point and an endpoint). primary database key - - + + A primary database key is a database key that identifies every row of a table. - + - - - - - - - + - + - + null + + + + + + foreign database key - + A foreign database key is a database key that refers to a key in some table. - + - + @@ -9181,39 +9181,39 @@ of endpoints (a start point and an endpoint). probability value - + A p-value or probability value is the probability of obtaining a test statistic at least as extreme as the one that was actually observed, assuming that the null hypothesis is true p-value - + - + - + - + - + - - - + + + - + 0.0 - - + + - + 1.0 @@ -9222,7 +9222,7 @@ of endpoints (a start point and an endpoint). street name A street name is the token given to identify a particular street. - + @@ -9230,7 +9230,7 @@ of endpoints (a start point and an endpoint). postal code A postal code is a geographic coordinate composed of a series of letters and/or digits appended to a postal address for the purpose of sorting mail. - + @@ -9238,7 +9238,7 @@ of endpoints (a start point and an endpoint). apartment number An apartment number is the number assigned to identify an apartment in a building of apartments. - + @@ -9246,7 +9246,7 @@ of endpoints (a start point and an endpoint). uncertainty value The uncertainty value (margin of error) of a measurement is a range of values likely to enclose the true value. - + @@ -9254,7 +9254,7 @@ of endpoints (a start point and an endpoint). standard deviation A standard deviation (represented by the symbol σ) is the quantity of variation from the average (mean, or expected value). - + @@ -9262,20 +9262,20 @@ of endpoints (a start point and an endpoint). versioned record A versioned record is a record for which there exists another variant based that was derived via modification of the facts. - + object - + An object is an entity that is wholly identifiable at any instant of time during which it exists. core - + - + @@ -9286,7 +9286,7 @@ of endpoints (a start point and an endpoint). to be a member of to be a member of is the capability to be considered a part of a collection. - + @@ -9294,87 +9294,87 @@ of endpoints (a start point and an endpoint). to distort to distort is the capability to change the appearance of an entity by some transformation. - + primer - + A primer is a nucleic acid that enables the synthesis of a complement strand of DNA by binding to it and acting as a point of transcription initiation. - + - + - + - + - + - - + + - + - + - + - + - + - + - - - + + + - + - - + + - + - + - + - + - + - + - - + + - + @@ -9385,7 +9385,7 @@ of endpoints (a start point and an endpoint). to bind to to bind to is the capability to physically interact with another object through a set of non-covalent interactions. - + @@ -9393,7 +9393,7 @@ of endpoints (a start point and an endpoint). spatial boundary A spatial boundary is the closure minus the interior of a subset of a topological space. - + @@ -9404,7 +9404,7 @@ of endpoints (a start point and an endpoint). PATO:0001827 hermaphrodite is a biological sex of an individual with both male and female sexual organs. - + @@ -9412,7 +9412,7 @@ of endpoints (a start point and an endpoint). answer An answer is a reply to a question. - + @@ -9420,7 +9420,7 @@ of endpoints (a start point and an endpoint). verbal language entity A verbal language entity is a language entity that is manifested through sound. - + @@ -9428,7 +9428,7 @@ of endpoints (a start point and an endpoint). page number A page number is the count of a page in a sequence of pages. - + @@ -9436,7 +9436,7 @@ of endpoints (a start point and an endpoint). linear position A linear position is the position of some object against a linear positioning system. - + @@ -9444,7 +9444,7 @@ of endpoints (a start point and an endpoint). sequence element position A sequence element position is the position of an element of a linear sequence. - + @@ -9454,7 +9454,7 @@ of endpoints (a start point and an endpoint). http://purl.obolibrary.org/obo/SO_0001263 A non-protein coding RNA (ncRNA) gene is a gene that encodes for a RNA transcript that is not further translated into a protein product. ncRNA gene - + @@ -9463,7 +9463,7 @@ of endpoints (a start point and an endpoint). A sequence start position is the start position for a sequence of characters. - + @@ -9472,7 +9472,7 @@ of endpoints (a start point and an endpoint). A sequence end position is the position of the last character in a sequence of characters relative to some linear frame of reference. - + @@ -9480,19 +9480,19 @@ of endpoints (a start point and an endpoint). count The number of elements of a finite set of objects. - + chemical entity role - + A chemical role is a processual role held by a chemical entity. - + - + @@ -9503,7 +9503,7 @@ of endpoints (a start point and an endpoint). catalytic role The role of a chemical participant that serves to increase the rate of reaction by lowering the activiation energy. - + @@ -9511,19 +9511,19 @@ of endpoints (a start point and an endpoint). substrate role The role of a chemical entity that is modified in a chemical reaction. - + product role - + The role of a chemical entity present at the end of a chemical reaction. - + - + @@ -9534,7 +9534,7 @@ of endpoints (a start point and an endpoint). cofactor role The role of a chemical entity involved in the mechanism for enzyme-mediated catalysis. - + @@ -9543,7 +9543,7 @@ of endpoints (a start point and an endpoint). A co-factor role in which the chemical entity is modified during catalysis and must be regenerated. - + @@ -9551,7 +9551,7 @@ of endpoints (a start point and an endpoint). prosthetic group role A coenzyme role of a chemical entity that is covalently bonded to the enzyme. - + @@ -9559,7 +9559,7 @@ of endpoints (a start point and an endpoint). co-substrate role A co-enzyme role of a chemical entity that is transiently associated, and is regenerated in a separate reaction. - + @@ -9567,7 +9567,7 @@ of endpoints (a start point and an endpoint). inhibitor role The role of a chemical entity that reduces the rate of reaction. - + @@ -9575,7 +9575,7 @@ of endpoints (a start point and an endpoint). activator role The role of a chemical entity that increases the rate of reaction. - + @@ -9584,7 +9584,7 @@ of endpoints (a start point and an endpoint). The quality of having a charge. - + @@ -9592,7 +9592,7 @@ of endpoints (a start point and an endpoint). uncharged The quality of not having a charge. - + @@ -9601,7 +9601,7 @@ of endpoints (a start point and an endpoint). A partial negative charge is a negative charge where the value of the charge is negative. - + @@ -9609,29 +9609,29 @@ of endpoints (a start point and an endpoint). partial negative charge A partial positive charge is a partial charge where the value of the charge is positive. - + partial charge - + The quality of having a charge that is not a full multiple of 1 unit charge. - + - + - + - + - + - + @@ -9639,23 +9639,23 @@ of endpoints (a start point and an endpoint). complete charge - + A complete charge is a charge where the value of the charge is a multiple of 1. - + - + - + - + - + - + @@ -9664,13 +9664,13 @@ of endpoints (a start point and an endpoint). URL - + A Uniform Resource Locator or Universal Resource Locator (URL) is a specific character string that constitutes a reference to an Internet resource. Uniform Resource Locator - + - + @@ -9681,7 +9681,7 @@ of endpoints (a start point and an endpoint). affection affection is an emotion characterized with a feeling or type of love for another living thing. - + @@ -9689,7 +9689,7 @@ of endpoints (a start point and an endpoint). angst angst is the intense feeling of apprehension, anxiety or inner turmoil. - + @@ -9697,7 +9697,7 @@ of endpoints (a start point and an endpoint). annoyance Annoyance is an unpleasant emtion that is characterized by a abnormal or excessive sensitivity to some external stimulus. - + @@ -9705,7 +9705,7 @@ of endpoints (a start point and an endpoint). anxiety anxiety is an emotion charactersized by intense feeling of fear and concern coupled with a physical response. - + @@ -9713,7 +9713,7 @@ of endpoints (a start point and an endpoint). apathy apathy is an emotion characterized by lack of interest, enthusiasm, or concern. - + @@ -9721,7 +9721,7 @@ of endpoints (a start point and an endpoint). arousal arousal is an emotion characterized by state of reactive to stimuli. It involves the activation of the reticular activating system in the brain stem, the autonomic nervous system and the endocrine system, leading to increased heart rate and blood pressure and a condition of sensory alertness, mobility and readiness to respond. - + @@ -9729,7 +9729,7 @@ of endpoints (a start point and an endpoint). awe awe is an emotion produced by that which is grand, sublime or powerful and is characterized by a combination of joy, fear and admiration/reverence/respect. - + @@ -9737,7 +9737,7 @@ of endpoints (a start point and an endpoint). boldness boldness is the trait of being willing to undertake things that involve risk or danger. - + @@ -9745,7 +9745,7 @@ of endpoints (a start point and an endpoint). boredom boredom is the emotion experience by those not interested in their surroundings or available activities. - + @@ -9753,7 +9753,7 @@ of endpoints (a start point and an endpoint). contempt contempt is disgust towards a lower status individual. - + @@ -9761,7 +9761,7 @@ of endpoints (a start point and an endpoint). contentment contentment is an emotion characterized by acknowledgement and satisfaction of the current state of affairs. - + @@ -9769,7 +9769,7 @@ of endpoints (a start point and an endpoint). curiosity curiosity is the strong desire to know or learn something. - + @@ -9778,7 +9778,7 @@ of endpoints (a start point and an endpoint). depressed depression is an unpleasant emotion linked to aversion to activity that can affect a person's thoughts, behavior, feelings and physical well-being. Depressed individuals may feel sad, anxious, empty, hopeless, worried, helpless, worthless, guilty, irritable, or restless. - + @@ -9786,7 +9786,7 @@ of endpoints (a start point and an endpoint). desire desire is a strong emotion of wanting to have something or wishing for something to happen. - + @@ -9794,17 +9794,17 @@ of endpoints (a start point and an endpoint). despair despair is depression, hopelessness or lack of hope. - + disappointment - disappointing disappointed + disappointing disappointment is the feeling of dissatisfaction that follows the failure of expectations or hopes to manifest. - + @@ -9812,7 +9812,7 @@ of endpoints (a start point and an endpoint). disgust Disgust is a feeling of revulsion or profound disapproval aroused by something unpleasant or offensive. - + @@ -9820,7 +9820,7 @@ of endpoints (a start point and an endpoint). dread dread is the instense negative emotion that induces fear and apprehension. - + @@ -9828,19 +9828,19 @@ of endpoints (a start point and an endpoint). ecstasy ecstacy is an emotion characterized by a heightened state of consciousness with total involvement of a subject. - + positive emotion - + A positive emotion is an emotion that feels good. - + - + @@ -9850,12 +9850,12 @@ of endpoints (a start point and an endpoint). negative emotion - + negative emotion is an emotion that does not feel good. - + - + @@ -9866,7 +9866,7 @@ of endpoints (a start point and an endpoint). embarassment Embarrassment is the emotion of intense discomfort with oneself, experienced upon having a socially unacceptable act or condition witnessed by or revealed to other. - + @@ -9874,7 +9874,7 @@ of endpoints (a start point and an endpoint). envy envy is an emotion that occurs when a person lacks another's (perceived) superior quality, achievement or possession and wishes that the other lacked it. - + @@ -9882,7 +9882,7 @@ of endpoints (a start point and an endpoint). euphoria euphoria is an emotion characterized by intense feelings of well-being, elation, happiness, ecstasy, excitement, and joy. - + @@ -9890,7 +9890,7 @@ of endpoints (a start point and an endpoint). excitement excitement is a positive emotion of feeling great enthusiasm and eagerness. - + @@ -9898,7 +9898,7 @@ of endpoints (a start point and an endpoint). fear Fear is a negative emotion induced by a perceived threat that induces one to hide or move quickly away from the location of the perceived threat. - + @@ -9906,7 +9906,7 @@ of endpoints (a start point and an endpoint). frustration Frustration is an emotion that arises from the perceived resistance to the fulfillment of individual will. - + @@ -9914,11 +9914,11 @@ of endpoints (a start point and an endpoint). gratitude gratification - appreciation - thankfullness gratefulness + thankfullness + appreciation Gratitude, thankfulness, gratefulness, or appreciation is a feeling, emotion or attitude in acknowledgment of a benefit that one has received or will receive. - + @@ -9926,16 +9926,16 @@ of endpoints (a start point and an endpoint). happiness happiness is an emotion characterized by positive or pleasant emotions ranging from contentment to intense joy. - + guilt - guilty Guilt is the emotion borne from feeling responsible for the commission of an offense and arises out of public humiliation. - + guilty + @@ -9943,7 +9943,7 @@ of endpoints (a start point and an endpoint). grief grief is an emotion in response to loss, whether physical or abstract including death, unemployment, ill health or the end of a relationship. - + @@ -9951,7 +9951,7 @@ of endpoints (a start point and an endpoint). hope hope is an emotion of belief in a positive outcome related to events and circumstances in one's life. - + @@ -9959,7 +9959,7 @@ of endpoints (a start point and an endpoint). hostility Hostility is the intense negative emotion of being in conflict or opposition to someone or something. - + @@ -9967,7 +9967,7 @@ of endpoints (a start point and an endpoint). hurt hurt is an unpleasant feeling, emotion or sensation. - + @@ -9975,50 +9975,50 @@ of endpoints (a start point and an endpoint). hysteria Hysteria is an unmanageable emotion. - + indifference - + indifference is an emotion characterized by lack of interest, concern, or sympathy. - + - + - + - - - + + + - + - + - + - - + + - + - + - + @@ -10029,7 +10029,7 @@ of endpoints (a start point and an endpoint). interest interest is the emotion of wanting to know or learn about something or someone. - + @@ -10037,7 +10037,7 @@ of endpoints (a start point and an endpoint). jealousy jealousy is an emotion and typically refers to the negative thoughts and feelings of insecurity, fear, and anxiety over an anticipated loss of something that the person values, particularly in reference to a human connection. - + @@ -10045,7 +10045,7 @@ of endpoints (a start point and an endpoint). joy joy is an emotion of intense happiness. - + @@ -10053,7 +10053,7 @@ of endpoints (a start point and an endpoint). loathing loathing is an intense dislike or disgust. - + @@ -10061,7 +10061,7 @@ of endpoints (a start point and an endpoint). loneliness Loneliness is an unpleasant emotion in which a person feels a strong sense of emptiness, yearning distress and solitude resulting from inadequate quantity or quality of social relationships. - + @@ -10069,7 +10069,7 @@ of endpoints (a start point and an endpoint). lust lust is the strong desire for sex. - + @@ -10077,7 +10077,7 @@ of endpoints (a start point and an endpoint). misery misery is a feeling of great unhappiness, suffering and/or pain. - + @@ -10085,7 +10085,7 @@ of endpoints (a start point and an endpoint). panic Panic is a sudden emotion of fear which is so strong as to dominate or prevent reason and logical thinking, replacing it with overwhelming feelings of anxiety and frantic agitation consistent with an animalistic fight-or-flight reaction. - + @@ -10093,7 +10093,7 @@ of endpoints (a start point and an endpoint). passion passion is the intense desire for something. - + @@ -10101,7 +10101,7 @@ of endpoints (a start point and an endpoint). pity Pity is the emotion of sadness or sorrow for another. - + @@ -10109,7 +10109,7 @@ of endpoints (a start point and an endpoint). pleasure pleasure is an emotion of happy satisfaction and enjoyment. - + @@ -10117,7 +10117,7 @@ of endpoints (a start point and an endpoint). pride pride is an emotion of satisfaction of attachment toward one's own or another's choices and actions, or toward a whole group of people, and is a product of praise, independent self-reflection, or a fulfilled feeling of belonging. - + @@ -10125,7 +10125,7 @@ of endpoints (a start point and an endpoint). rage Rage is a feeling of intense anger that is associated with the Fight-or-flight response. - + @@ -10133,7 +10133,7 @@ of endpoints (a start point and an endpoint). regret regret is a feeling of sadness, repentance, or disappointment over something that has happened or been done. - + @@ -10141,7 +10141,7 @@ of endpoints (a start point and an endpoint). remorse remorse is an emotion of personal regret felt by a person after he or she has committed an act which they deem to be shameful, hurtful, or violent. - + @@ -10152,7 +10152,7 @@ of endpoints (a start point and an endpoint). sad unhappy sadness is emotional pain associated with, or characterized by feelings of disadvantage, loss, despair, helplessness, sorrow, and rage. - + @@ -10164,9 +10164,9 @@ of endpoints (a start point and an endpoint). satisfaction is an emotion of fulfillment of one's wishes, expectations, or needs, or the pleasure derived from this. satisfaction is the emotion of fulfillling one's wishes, expectations, or needs. - contentment pleasure - + contentment + @@ -10174,7 +10174,7 @@ of endpoints (a start point and an endpoint). shame shame is the emotion borne from feeling responsible for the commission of an offense. - + @@ -10182,7 +10182,7 @@ of endpoints (a start point and an endpoint). shock shock is an emotion of sudden upset or surprise. - + @@ -10190,7 +10190,7 @@ of endpoints (a start point and an endpoint). shyness shyness is an emotion of apprehension, lack of comfort, or awkwardness experienced when in proximity to, approaching, or being approached by other individuals, especially in new situations or with unfamiliar individuals. - + @@ -10198,7 +10198,7 @@ of endpoints (a start point and an endpoint). sorrow sorrow is the emotion that is characterized by a long term state of intense sadness, distress and a degree of resignation (not accepting). - + @@ -10206,7 +10206,7 @@ of endpoints (a start point and an endpoint). suffering Suffering is the unpleasant emotion and aversion associated with the perception of harm or threat of harm in an individual. - + @@ -10214,7 +10214,7 @@ of endpoints (a start point and an endpoint). surprise surprise is a brief emotion experienced as the result of an unexpected event. - + @@ -10222,7 +10222,7 @@ of endpoints (a start point and an endpoint). terror terror is the extreme feeling of fear. - + @@ -10230,7 +10230,7 @@ of endpoints (a start point and an endpoint). wonder wonder is an emotion of perceiving something very rare or unexpected, but not threatening. - + @@ -10238,7 +10238,7 @@ of endpoints (a start point and an endpoint). worry worry is the emotion characterized by concer over a real or imaginary issue. - + @@ -10246,7 +10246,7 @@ of endpoints (a start point and an endpoint). department chair role A department chain role is the role of an individual that heads a department at a academic organization. - + @@ -10254,7 +10254,7 @@ of endpoints (a start point and an endpoint). student advisor role A student advisor role is the role of an individual employed at an academic organization that is involved in advising students. - + @@ -10262,7 +10262,7 @@ of endpoints (a start point and an endpoint). undergraduate student advisor role An undergraduate student advisor role is the role of an individual employed at an academic organization that is involved in advising undergraduate students. - + @@ -10270,7 +10270,7 @@ of endpoints (a start point and an endpoint). graduate student advisor role A graduate student advisor role is the role of an individual employed at an academic organization that is involved in advising graduate students. - + @@ -10278,7 +10278,7 @@ of endpoints (a start point and an endpoint). reactant role The role of a chemical entity present at the beginning of a chemical reaction. - + @@ -10286,7 +10286,7 @@ of endpoints (a start point and an endpoint). regulator role The role of a chemical entity that modifies the rate of reaction. - + @@ -10294,7 +10294,7 @@ of endpoints (a start point and an endpoint). investigational role An investigational role is a role held by participants involved in an investigation. - + @@ -10302,7 +10302,7 @@ of endpoints (a start point and an endpoint). host role The role of an organism in providing resources to maintain the survival and/or reproduction of another organism. - + @@ -10310,7 +10310,7 @@ of endpoints (a start point and an endpoint). subject role A subject role is the role of an individual that is the target of the study. - + @@ -10318,7 +10318,7 @@ of endpoints (a start point and an endpoint). publishing role A publishing role is the role of an individual that is involved in the preparation and issue of creative works for consumption by a wider audience. - + @@ -10326,7 +10326,7 @@ of endpoints (a start point and an endpoint). publisher role A publisher role is the role of an individual that prepares and issues creative works. - + @@ -10334,19 +10334,19 @@ of endpoints (a start point and an endpoint). author role An author role is the role of an individual that creates a creative, written work. - + buffer role - + A buffer role is the role of a chemical substance which maintains a pH at a near constant value. - + - + @@ -10356,12 +10356,12 @@ of endpoints (a start point and an endpoint). chemical substance role - + A chemical substance role is a chemical entity role held by a chemical substance. - + - + @@ -10371,12 +10371,12 @@ of endpoints (a start point and an endpoint). molecular entity role - + A molecular entity role is a chemical entity role held by a molecule. - + - + @@ -10387,7 +10387,7 @@ of endpoints (a start point and an endpoint). toxin role A toxin role is a toxic role of a chemical substance that is poisonous and is produced by an organism. - + @@ -10395,19 +10395,19 @@ of endpoints (a start point and an endpoint). toxic role A toxic role is the role of a chemical substance that is poisonous. - + reagent role - + A role of a chemical substance that participates in a chemical reaction as part of some scientific investigation. - + - + @@ -10418,7 +10418,7 @@ of endpoints (a start point and an endpoint). to luminesce to luminesce is to emit light through cold body radiation - + @@ -10426,7 +10426,7 @@ of endpoints (a start point and an endpoint). to fluoresce to fluoresce is to emit light as a result of absorbing light or other electromagnetic radiation. - + @@ -10434,19 +10434,19 @@ of endpoints (a start point and an endpoint). molecular tracer role A molecular tracer role is a reactant role of a molecular entity that serves as a marker for the presence, abundance, or location of a molecular target that it associates with. - + association - + An assocation is a relationship between two or more entities derived by some informational analysis. - + - + @@ -10458,7 +10458,7 @@ of endpoints (a start point and an endpoint). statistical association A statistical association is any relationship between two measured quantities that renders them statistically dependent. - + @@ -10466,7 +10466,7 @@ of endpoints (a start point and an endpoint). chromosome A chromosome is a molecular complex of circular or linear DNA and bound proteins. - + @@ -10474,7 +10474,7 @@ of endpoints (a start point and an endpoint). top value axis A top value axis is a value axis that is spatially positioned to the top of the plot area. - + @@ -10482,7 +10482,7 @@ of endpoints (a start point and an endpoint). bottom value axis A bottom value axis is a value axis that is spatially positioned to the bottom of the plot area. - + @@ -10490,7 +10490,7 @@ of endpoints (a start point and an endpoint). chart A chart is a figure that displays the relationship among tabular numeric data, functions or some kinds of qualitative structures. - + @@ -10498,7 +10498,7 @@ of endpoints (a start point and an endpoint). map A map is a a visual representation of an area that depicts the relationship between elements of that space. - + @@ -10506,7 +10506,7 @@ of endpoints (a start point and an endpoint). heatmap A heatmap is a graphical representation of data where the individual values contained in a matrix are represented as colors. - + @@ -10514,7 +10514,7 @@ of endpoints (a start point and an endpoint). steamgraph A steamgraph is a multi-line stacked graph that yields the appearance of continuous y-values across the x-axis. - + @@ -10522,7 +10522,7 @@ of endpoints (a start point and an endpoint). boxplot A boxplot (box-and-whisker diagram) is a convenient way of graphically depicting groups of numerical data through their five-number summaries: the smallest observation (sample minimum), lower quartile (Q1), median (Q2), upper quartile (Q3), and largest observation (sample maximum). - + @@ -10530,7 +10530,7 @@ of endpoints (a start point and an endpoint). geographic heatmap A geographic heatmap is a graphical representation of data over a geographic region where individual values are represented as colors. - + @@ -10538,7 +10538,7 @@ of endpoints (a start point and an endpoint). histogram A histogram is a graphical representation of data which consists of tabular frequencies, shown as adjacent rectangles, over discrete intervals (bins) , with an area equal to the frequency of the observations in the interval. - + @@ -10546,7 +10546,7 @@ of endpoints (a start point and an endpoint). measurement scale A measurement scale is a functional specification that specifies an allowed range of categories or values. - + @@ -10554,7 +10554,7 @@ of endpoints (a start point and an endpoint). nomimal scale A nominal scale of measurement only specifies a limited set of categories. - + @@ -10562,40 +10562,40 @@ of endpoints (a start point and an endpoint). binary scale A binary scale is a measurement scale that specifies a choice between two values. - + numeric scale - + A numeric scale of measurement is one that only specifies numeric values. - + - + - + - + - + - + - + - - + + - + @@ -10605,33 +10605,33 @@ of endpoints (a start point and an endpoint). decimal scale - + A decimal scale of measurement is one that only specifies decimal values. - + - + - + - + - + - + - + - - + + - + @@ -10641,33 +10641,33 @@ of endpoints (a start point and an endpoint). integer scale - + An integer scale of measurement is one that only specifies integer values. - + - + - + - + - + - + - + - - + + - + @@ -10677,20 +10677,20 @@ of endpoints (a start point and an endpoint). modifying - - + + modification modifying is the process by which an entity gains or loses parts, qualities, roles, dispositions, functions, etc, but maintains their identity through these changes. - + - + - + @@ -10700,33 +10700,33 @@ of endpoints (a start point and an endpoint). reproducing - + reproducing is a process characterized by creation of an entity that is similar or exactly the same as the template from which it is derived. - + - + - + - - - + + + - + - - + + - + @@ -10737,7 +10737,7 @@ of endpoints (a start point and an endpoint). independent variable An independent variable is a variable that may take on different values independent of other elements in a system. - + @@ -10745,7 +10745,7 @@ of endpoints (a start point and an endpoint). dependent variable A dependent variable is one whose value changes as a consequence of changes in other values in the system. - + @@ -10753,7 +10753,7 @@ of endpoints (a start point and an endpoint). Gantt chart A Gantt chart is a bar chart that illustrates a project schedule. - + @@ -10761,7 +10761,7 @@ of endpoints (a start point and an endpoint). correlation A correlation is a statistical relationship involving dependence between two random variables or datasets. - + @@ -10769,7 +10769,7 @@ of endpoints (a start point and an endpoint). television program A television program is a audiovisual media that is produced and broadcast using a television. - + @@ -10777,7 +10777,7 @@ of endpoints (a start point and an endpoint). radio receiver A radio receiver is a communication device that receives its input from an antenna, uses electronic filters to separate a wanted radio signal from all other signals picked up by this antenna, amplifies it to a level suitable for further processing, and finally converts through demodulation and decoding the signal into a form usable for the consumer, such as sound, pictures, digital data, measurement values, navigational positions. - + @@ -10785,7 +10785,7 @@ of endpoints (a start point and an endpoint). telephone The telephone is a communications device that transmits and receives sounds, and are minimally composed of a microphone to speak into, a speaker'which reproduces the voice of the other person and a ringer which makes a sound to alert the owner when a call is coming in. - + @@ -10793,7 +10793,7 @@ of endpoints (a start point and an endpoint). radar A radar is an object-detection system which uses radio waves to determine the range, altitude, direction, or speed of objects. - + @@ -10801,7 +10801,7 @@ of endpoints (a start point and an endpoint). pie chart A pie chart is a circular chart divided into sectors each of whose length is proportional to the quantity it represents. - + @@ -10809,7 +10809,7 @@ of endpoints (a start point and an endpoint). matrix chart A matrix chart summarizes a multidimensional data set in a grid. - + @@ -10817,7 +10817,7 @@ of endpoints (a start point and an endpoint). network diagram A network diagram consists of a set of vertices connected by edges. - + @@ -10825,7 +10825,7 @@ of endpoints (a start point and an endpoint). block histogram A block histogram contains an x-axis that is divided into bins which correspond to value ranges. Each item in the data set is drawn as a rectangular block, and the blocks are piled into the bins to show how many values in each range. - + @@ -10833,7 +10833,7 @@ of endpoints (a start point and an endpoint). bubble chart A bubble chart contains circles whose area corresponds to a value. - + @@ -10841,7 +10841,7 @@ of endpoints (a start point and an endpoint). stack graph A stack graph is a statistical graph which presents multiple series in which the distance between one series and another indicates the relative contribution to the total for any x-value. - + @@ -10849,7 +10849,7 @@ of endpoints (a start point and an endpoint). treemap A treemap is a chart that fully partitions the area into a set of rectangles whose area represents its relative value. - + @@ -10857,19 +10857,19 @@ of endpoints (a start point and an endpoint). word tree A word tree is a chart that links phrases with contexts through a tree-like branching structure. - + textual chart - + A textual chart is a chart containing text. - + - + @@ -10881,7 +10881,7 @@ of endpoints (a start point and an endpoint). A tag cloud is a visualization of word frequencies. word cloud - + @@ -10889,7 +10889,7 @@ of endpoints (a start point and an endpoint). phrase net diagram A phrase net diagram illustrates the relationship between different words used in a text. - + @@ -10897,7 +10897,7 @@ of endpoints (a start point and an endpoint). mereological chart A mereological chart is a chart that illustrates the parts in the context of the whole. - + @@ -10905,7 +10905,7 @@ of endpoints (a start point and an endpoint). conversing conversing a form of interactive, spontaneous communication between two or more agents who are following rules of etiquette. - + @@ -10913,7 +10913,7 @@ of endpoints (a start point and an endpoint). numeric label A numeric label is a number used as a label. - + @@ -10921,7 +10921,7 @@ of endpoints (a start point and an endpoint). start position A start position is the proximal position of an object relative to an origin in a linear system. - + @@ -10934,7 +10934,7 @@ of endpoints (a start point and an endpoint). An interval is a set of real numbers that includes all numbers between any two numbers in the set. an interval is a set of real numbers with the property that any number that lies between thwo numbers in the set is also included in the set. The set of all numbers x satisfying 0<=x<=1 is an interval which contains 0 and 1, as well as numbers between them. - + @@ -10942,7 +10942,7 @@ of endpoints (a start point and an endpoint). tree diagram A tree diagram is a hierarchical network diagram in which a root vertex is connected to one or more other vertices through a directed edge, which in turn may be connected to other vertices. - + @@ -10950,7 +10950,7 @@ of endpoints (a start point and an endpoint). flowchart A flowchart is a diagram that represents an algorithm or process, showing the steps as boxes of various kinds, and their order by connecting these with arrows. - + @@ -10958,7 +10958,7 @@ of endpoints (a start point and an endpoint). venn diagram A Venn diagram is a chart that illustrates all possible logical relations between a finite collection of sets as overlapping circles. - + @@ -10966,7 +10966,7 @@ of endpoints (a start point and an endpoint). dendrogram A dendrogram is a tree diagram used to illustrate the arrangement of the clusters produced by hierarchical clustering. - + @@ -10974,7 +10974,7 @@ of endpoints (a start point and an endpoint). apprehension apprehension is the negative emotion that something unpleasant will occur. - + @@ -10982,7 +10982,7 @@ of endpoints (a start point and an endpoint). resentment resentment is disgust directed toward a higher status individual. - + @@ -10990,7 +10990,7 @@ of endpoints (a start point and an endpoint). pain Pain is an unpleasant sensory and emotional experience associated with actual or potential tissue damage, or described in terms of such damage. - + @@ -10998,16 +10998,16 @@ of endpoints (a start point and an endpoint). default parameter A default parameter is a parameter which has a default value. - + end position - stop position An end position is the distal position of an object relative to an origin in a linear system. - + stop position + @@ -11015,7 +11015,7 @@ of endpoints (a start point and an endpoint). sick sick is the status of a living organism that is behaving at a sub-optimal level. - + @@ -11023,7 +11023,7 @@ of endpoints (a start point and an endpoint). environment An environment is a geographic region that hosts certain processes or objects. - + @@ -11031,7 +11031,7 @@ of endpoints (a start point and an endpoint). device A device is usually a constructed tool. - + @@ -11039,7 +11039,7 @@ of endpoints (a start point and an endpoint). communication device A communication device is a device that facilitates the transmission of information through encoded in an audio or digital signal between a sender and a receiver. - + @@ -11047,7 +11047,7 @@ of endpoints (a start point and an endpoint). existence quality existence quality is the quality of an entity that describe in what environment it is known to exist. - + @@ -11057,7 +11057,7 @@ of endpoints (a start point and an endpoint). real is the quality of an entity that exists in real space and time. - + @@ -11065,7 +11065,7 @@ of endpoints (a start point and an endpoint). fictional fictional is the quality of an entity that exists only in a creative work of fiction. - + @@ -11073,7 +11073,7 @@ of endpoints (a start point and an endpoint). virtual virtual is the quality of an entity that exists only in a virtual setting such as a simulation or game environment. - + @@ -11081,7 +11081,7 @@ of endpoints (a start point and an endpoint). not started not started is the status of a process that is predicted to exist but has not yet begun. - + @@ -11089,29 +11089,29 @@ of endpoints (a start point and an endpoint). standard operating procedure A standard operating procedure is a specification approved for use in specific environments. - + agreement quality - + agreement quality is a quality that exhibits the degree of consensus for some set of assertions. - + - + - + - + - + - + @@ -11122,7 +11122,7 @@ of endpoints (a start point and an endpoint). agreement is the result of consensus decision making when members of the group agree. - + @@ -11130,19 +11130,19 @@ of endpoints (a start point and an endpoint). disagreement agreement is the result of consensus decision making when members of the group do not all agree. - + poison role - + A poison role is the role of a substance that causes some negative disturbance in an organism. - + - + @@ -11152,60 +11152,60 @@ of endpoints (a start point and an endpoint). communicating - communication communicating is the process of conveying information through the exchange of thoughts, messages, or information, as by speech, visuals, signals, writing, or behaviour. - + communication + observational study - - + + observational study draws inferences about the possible effect of a treatment on subjects, where the assignment of subjects into a treated group versus a control group is outside the control of the investigator - + - + + + + + + + - + - + - + - + - + - - + + - + - - - - - - syllable A syllable is a verbal entity of language having one vowel sound, with or without surrounding consonants, forming the whole or a part of a word. - + @@ -11213,7 +11213,7 @@ of endpoints (a start point and an endpoint). consonant A consonant is a verbal entity of language that is articulated with complete or partial closure of the vocal tract. - + @@ -11221,7 +11221,7 @@ of endpoints (a start point and an endpoint). vowel A vowel is a verbal entity of language that is pronounced with an open vocal tract so that there is no build-up of air pressure at any point above the glottis. - + @@ -11229,7 +11229,7 @@ of endpoints (a start point and an endpoint). sign language A sign language (also signed language) is a language that involves manual communication and body language to convey meaning. This can involve simultaneously combining hand shapes, orientation and movement of the hands, arms or body, and facial expressions to fluidly express a speaker's thoughts. - + @@ -11237,7 +11237,7 @@ of endpoints (a start point and an endpoint). verbal language A verbal language is a language that uses sounds to communicate. - + @@ -11245,26 +11245,26 @@ of endpoints (a start point and an endpoint). written language written language is a language that is communicated through a writing system. - + gene-disease association - - + + A gene-disease association is an association between a gene and a disease. - + - + - + @@ -11275,7 +11275,7 @@ of endpoints (a start point and an endpoint). genome A genome is a collection of nucleic acids. - + @@ -11284,7 +11284,7 @@ of endpoints (a start point and an endpoint). http://purl.obolibrary.org/obo/SO_0001217 A gene that contains an open reading frame which codes for a protein. - + @@ -11292,19 +11292,19 @@ of endpoints (a start point and an endpoint). functional rna coding gene A gene that codes for a functional RNA molecule. - + predicted gene - + A predicted gene is a gene that was identified through computational method but has not been experimentally validated. - + - + @@ -11316,7 +11316,7 @@ of endpoints (a start point and an endpoint). http://purl.obolibrary.org/obo/SO_0000336 A pseudo gene is a region of a nucleic acid that either cannot be transcribed, or its RNA transcript cannot be translated. - + @@ -11324,19 +11324,19 @@ of endpoints (a start point and an endpoint). sequence assembly A sequence assembly is a sequence that is produced as by the alignment of two or more sequences. - + validated gene - + An experimentally validated gene is a gene whose existence has been demonstrated through experimental methods. - + - + @@ -11347,40 +11347,40 @@ of endpoints (a start point and an endpoint). unsupported unsupported is an existence quality in which there is no evidence to support the existence of the entity in any world (real or hypothetical) - + chemical-disease association - + A chemical-disease association is an association between a chemical and a disease. - + - + - + - - - + + + - + - - + + - + @@ -11392,7 +11392,7 @@ of endpoints (a start point and an endpoint). An experiment is an investigation that has the goal of verifying, falsifying, or establishing the validity of a hypothesis. study - + @@ -11400,7 +11400,7 @@ of endpoints (a start point and an endpoint). suspended suspended is the status of a process that is no longer progressing towards completion. - + @@ -11408,7 +11408,7 @@ of endpoints (a start point and an endpoint). cancelled cancelled is a process status in which the process, while planned to occur, will not occur. - + @@ -11416,26 +11416,26 @@ of endpoints (a start point and an endpoint). aborted aborted is a process status in which a started process will not complete as intended. - + literature curation - - + + literature curation is the process of an agent selecting and extracting terms and phrases from a document. - + - + - + @@ -11445,35 +11445,35 @@ of endpoints (a start point and an endpoint). procedure - - + + A procedure is a process that attempts to achieve one or more objectives by following an established set of actions. - + - + - + - + - + - + - + - + - + @@ -11482,12 +11482,12 @@ of endpoints (a start point and an endpoint). clinical trial - + A clinical trial is an intervention trial to determine the safety and efficacy of medical interventions (e.g., drugs, diagnostics, devices, therapy protocols). - + - + @@ -11497,51 +11497,51 @@ of endpoints (a start point and an endpoint). medical diagnosis - - + + A medical diagnosis (often simply termed diagnosis) refers to the process of attempting to determine or identify a possible disease or disorder. - + + + + + + + - + - + - + - + - + - + - - + + - + - - - - - - differential diagnosis A differential diagnosis (sometimes abbreviated DDx, ddx, DD, D/Dx, or ΔΔ) is a systematic diagnostic method used to identify the presence of an entity where multiple alternatives are possible (and the process may be termed differential diagnostic procedure), and may also refer to any of the included candidate alternatives (which may also be termed candidate condition). - + @@ -11549,19 +11549,19 @@ of endpoints (a start point and an endpoint). diagnostic opinion A diagnostic opinion is an opinion resulting from a medical diagnostic procedure. - + opinion - + An opinion is a belief that is the result of emotion or interpretation of facts. - + - + @@ -11571,12 +11571,12 @@ of endpoints (a start point and an endpoint). drug effect - + A drug effect is a chemical interaction in which a chemical elicits a marked characteristic of a biological system. - + - + @@ -11586,12 +11586,12 @@ of endpoints (a start point and an endpoint). drug drug interaction - + A drug-drug interaction is an interaction in which two drugs interact in such a way to produce a non-additive biological response. - + - + @@ -11602,80 +11602,80 @@ of endpoints (a start point and an endpoint). assay - - + + An assay is an investigative (analytic) procedure in laboratory medicine, pharmacology, environmental biology, and molecular biology for qualitatively assessing or quantitatively measuring the presence or amount or the functional activity of a target entity (the analyte) which can be a drug or biochemical substance or a cell in an organism or organic sample. - + - - - - - - - + - + - + - + - - - + + + - + - + - + - + - + - - + + - + + + + + + + toxicity - + toxicity is the quality of a chemical substance to cause injury to an organism in a dose dependent manner. - + - + - + - + - + - + @@ -11686,7 +11686,7 @@ of endpoints (a start point and an endpoint). toxic is the quality of a substance imparing the normal functioning of a system. - + @@ -11694,7 +11694,7 @@ of endpoints (a start point and an endpoint). non toxic non toxic is the quality of a substance having no damaging effect to a system. - + @@ -11702,7 +11702,7 @@ of endpoints (a start point and an endpoint). chemical quality chemical quality is the quality of a chemical entity. - + @@ -11710,7 +11710,7 @@ of endpoints (a start point and an endpoint). healthy healthy is an organismal state of complete physical, mental and social well-being. - + @@ -11718,7 +11718,7 @@ of endpoints (a start point and an endpoint). age age is the length of time that a person has lived or a thing has existed. - + @@ -11726,7 +11726,7 @@ of endpoints (a start point and an endpoint). ethnicity ethnicity is the biological quality of membership in a social group based on a common heritage. - + @@ -11734,7 +11734,7 @@ of endpoints (a start point and an endpoint). race race is a characteristic of an individual by heritable phenotypic characteristics, geographic ancestry, physical appearance, ethnicity, and social status. - + @@ -11742,7 +11742,7 @@ of endpoints (a start point and an endpoint). ethnic group An ethnic group is a group of people whose members identify with each other through a common heritage, consisting of a common culture, including a shared language or dialect. - + @@ -11750,7 +11750,7 @@ of endpoints (a start point and an endpoint). syndrome A syndrome is composed of a set of several clinically recognizable features, signs (observed by someone other than the patient), symptoms (reported by the patient), phenomena or characteristics that often occur together. - + @@ -11758,7 +11758,7 @@ of endpoints (a start point and an endpoint). ratio A ratio is a relationship between two numbers of the same kind expressed arithmetically as a dimensionless quotient of the two which explicitly indicates how many times the first number contains the second. - + @@ -11766,7 +11766,7 @@ of endpoints (a start point and an endpoint). dose A dose is the quantity of a chemical substance administered to a biological system. - + @@ -11774,7 +11774,7 @@ of endpoints (a start point and an endpoint). effective dose effective dose is the amount of a substance required to produce an effect on a predefined percentage of a population. - + @@ -11782,7 +11782,7 @@ of endpoints (a start point and an endpoint). expected value An expected value (or e-value) is the weighted average of all possible values that a random variable can take on. - + @@ -11790,7 +11790,7 @@ of endpoints (a start point and an endpoint). diagnostic test A diagnostic test is a procedure performed to confirm, or determine the presence of disease in an individual suspected of having the disease, usually following the report of symptoms, or based on the results of other medical tests. - + @@ -11798,7 +11798,7 @@ of endpoints (a start point and an endpoint). medical screening A medical screening is a medical test or series used to detect or predict the presence of disease in individuals at risk for disease within a defined group, such as a population, family, or workforce - + @@ -11806,7 +11806,7 @@ of endpoints (a start point and an endpoint). medical procedure A medical procedure is a procedure to identify, examine, alleviate or eliminate an undesirable biological disease or disorder. - + @@ -11814,7 +11814,7 @@ of endpoints (a start point and an endpoint). prognosis A prognosis is a proposition about the likely course of a disease, the chance of recovery or recurrence. - + @@ -11822,7 +11822,7 @@ of endpoints (a start point and an endpoint). report A report is a textual document made that present focused, salient content to a specific audience. - + @@ -11830,7 +11830,7 @@ of endpoints (a start point and an endpoint). medical health record A medical health record is a record of a single patient's medical history. - + @@ -11838,19 +11838,19 @@ of endpoints (a start point and an endpoint). medical report A medical report is a report prepared by a health care practioner about test outcomes or health status of an individual. - + peer reviewed article - + A peer reviewed article is an article that has undergone peer-review and deemed acceptable for publication. - + - + @@ -11861,7 +11861,7 @@ of endpoints (a start point and an endpoint). major version number A major version number is a version of a software that exhibits a significant change in functionalilty from a prior version. - + @@ -11869,7 +11869,7 @@ of endpoints (a start point and an endpoint). minor version number A minor version number is a version of a software that exhibits minor features or significant fix from a prior version. - + @@ -11877,19 +11877,19 @@ of endpoints (a start point and an endpoint). revision number A revision number is a version of a software in which bugs have been fixed from a prior version. - + text quality - + text quality is the quality of a textual entity. - + - + @@ -11900,7 +11900,7 @@ of endpoints (a start point and an endpoint). reviewed reviewed is the quality of a textual entity that has been examined and commented on by another party. - + @@ -11909,16 +11909,16 @@ of endpoints (a start point and an endpoint). peer-reviewed is the quality of a textual entity that has been examined and commented by a peer expert reviewer. - + draft - drafted draft is the quality of text that has not yet complete. - + drafted + @@ -11926,7 +11926,7 @@ of endpoints (a start point and an endpoint). finalized finalized is the quality of a textual entity that is in its final form. - + @@ -11934,7 +11934,7 @@ of endpoints (a start point and an endpoint). editor reviewed editor reviewed is the quality of a textual entity that has been examined and commented on by an editor. - + @@ -11942,7 +11942,7 @@ of endpoints (a start point and an endpoint). written written is the quality of information that is embodied as visual glyphs in some material form. - + @@ -11950,26 +11950,26 @@ of endpoints (a start point and an endpoint). morpheme A morpheme is the smallest semantically meaningful unit in a language. - + study design - - study protocol + A study design is a protocol for the proper execution of a study which normally requires a carefullly crafted research question or hypothesis and at least one variable under observation and observed values for that variable. - + study protocol + - + - + - + @@ -11980,7 +11980,7 @@ of endpoints (a start point and an endpoint). recipe A recipe is a set of instructions that describe how to prepare or make something. - + @@ -11988,7 +11988,7 @@ of endpoints (a start point and an endpoint). experimental protocol An experimental protocol is an action specification with respect to the design and implementation of experiments. In addition to providing a detailed set of procedures and lists of required equipment and instruments, experimental protocols often include information on safety precautions, the calculation of results and reporting standards, including statistical analysis and rules for predefining and documenting excluded data to avoid bias. - + @@ -11996,29 +11996,29 @@ of endpoints (a start point and an endpoint). viroid A viroid is a molecule of RNA that does not code for and is not protected by a protein coat. - + polar quality - + The quality of being polar or not polar. - + - + - + - + - + - + @@ -12029,7 +12029,7 @@ of endpoints (a start point and an endpoint). polar is the quality of having a dipole. - + @@ -12037,7 +12037,7 @@ of endpoints (a start point and an endpoint). non-polar non-polar is the quality of not having a dipole. - + @@ -12045,40 +12045,40 @@ of endpoints (a start point and an endpoint). intervention study An intervention study has the objective of improving the condition of an individual or a group of individuals, and demonstrates the magnitude of that capability by comparing it to a control group. - + sampling - + sampling is the act of obtaining a sample, whether through selection, collection or preparation. - + - + - + - - - + + + - + - - + + - + @@ -12088,33 +12088,33 @@ of endpoints (a start point and an endpoint). sample - + A sample is a limited quantity of something (e.g. an individual or set of individuals from a population, or a portion of a substance) to be used for testing, analysis, inspection, investigation, demonstration, or trial use. - + - + - + - - - + + + - + - - + + - + @@ -12124,33 +12124,33 @@ of endpoints (a start point and an endpoint). data analysis - + data analysis is a process of inspecting, cleaning, transforming, and modeling data with the goal of highlighting useful information, suggesting conclusions, and supporting decision making. - + - + - + - - - + + + - + - - + + - + @@ -12160,12 +12160,12 @@ of endpoints (a start point and an endpoint). data collection - + data collection is the process of acquiring information. - + - + @@ -12176,72 +12176,72 @@ of endpoints (a start point and an endpoint). reason A reason is a justification that specifies the motive for an action or a determination. - + measuring - - + + measurement measuring is the process of determining the size, amount, or degree of (something) by using an instrument or device marked in standard units - - - - - - - + - + - + - + - + - + - + - + - + - + + + + + + + observing - - + + observation observing is a process of passive interaction in which one entity makes note of attributes of one or more entities. - + - + - + - + - + @@ -12249,13 +12249,13 @@ of endpoints (a start point and an endpoint). character position - - The ordinal position of a character in a sequence of characters. + character offset - + The ordinal position of a character in a sequence of characters. + - + @@ -12265,12 +12265,12 @@ of endpoints (a start point and an endpoint). word start position - + The position of the first character in a word as an offset from the first character of the text in which it is found. - + - + @@ -12281,7 +12281,7 @@ of endpoints (a start point and an endpoint). word end position word end position is the position of the last character in a word as an offset from the first character of the text in which it is found. - + @@ -12289,7 +12289,7 @@ of endpoints (a start point and an endpoint). gesturing gesturing is a form of non-verbal communication in which visible bodily actions communicate particular messages, either in place of speech or together and in parallel with spoken words. Gestures include movement of the hands, face, or other parts of the body. - + @@ -12297,7 +12297,7 @@ of endpoints (a start point and an endpoint). planned planned is a process status for a process that has not yet started, but is referred to in a plan. - + @@ -12305,7 +12305,7 @@ of endpoints (a start point and an endpoint). population A population is all the organisms that both belong to the same group or species and live in the same geographical area. - + @@ -12313,7 +12313,7 @@ of endpoints (a start point and an endpoint). human population A human population refers to a collection of human beings. - + @@ -12321,7 +12321,7 @@ of endpoints (a start point and an endpoint). family A group of people affiliated by consanguinity, affinity, or co-residence. - + @@ -12329,7 +12329,7 @@ of endpoints (a start point and an endpoint). community A community is a sizeable social unit that shares common values. - + @@ -12337,26 +12337,26 @@ of endpoints (a start point and an endpoint). speculation speculation is an opinion based on incomplete evidence. - + study - - + + A study is a process that realizes the steps of a study design. - + - + - + @@ -12367,7 +12367,7 @@ of endpoints (a start point and an endpoint). controlled observational cohort study In a controlled observational cohort study, two groups of subjects are selected from two populations that are thought to differ in only one characteristic. The groups of subjects are studied for a specific period and contrasted at the end of the study period. - + @@ -12375,7 +12375,7 @@ of endpoints (a start point and an endpoint). control group A control group is a group of individuals that are not subject to an intervention of interest, but rather serve as a baseline to compare the outcomes in the intervention group. - + @@ -12383,17 +12383,17 @@ of endpoints (a start point and an endpoint). intervention group An intervention group is a group of individuals that are subject to an intervention. - + control variable - extraneous variable controlled variable + extraneous variable A control variable that is believed to alter the dependent or independent variables, but may not actually be the focus of the experiment. So that variable will be kept constant or monitored to try to minimise its effect on the experiment. - + @@ -12401,7 +12401,7 @@ of endpoints (a start point and an endpoint). text span start position text span start position is the position (offset) of the first character of a text span in relation the text it is from. - + @@ -12409,41 +12409,41 @@ of endpoints (a start point and an endpoint). text span end position text span end position is the position (offset) of the last character of a text span in relation the text it is from. - + text span - - selector + A text span is a subset of contiguous sequence of characters of a textual entity. - + selector + - + - + - - - + + + - + - - + + - + @@ -12454,7 +12454,7 @@ of endpoints (a start point and an endpoint). t-statistic A t-statistic is a ratio of the departure of an estimated parameter from its notional value and its standard error. - + @@ -12462,7 +12462,7 @@ of endpoints (a start point and an endpoint). microarray probe set identifier A microarray probe set identifier is an identifier for a set of probe pairs selected to represent expressed sequences on an array. - + @@ -12470,7 +12470,7 @@ of endpoints (a start point and an endpoint). microarray experiment A microarray experiment is an experiment that involves a microarray device to measure the expression of one or more genes. - + @@ -12478,7 +12478,7 @@ of endpoints (a start point and an endpoint). gene expression value A gene expression value is a measured value obtained from a gene expression experiment. - + @@ -12486,7 +12486,7 @@ of endpoints (a start point and an endpoint). differential gene expression ratio A differential gene expression ratio is the ratio of gene expression values from a test sample compared to a control sample. - + @@ -12494,7 +12494,7 @@ of endpoints (a start point and an endpoint). genotype A genotype is a functional specification of a biological entity in terms of its genetic composition (or lack thereof). - + @@ -12503,57 +12503,57 @@ of endpoints (a start point and an endpoint). A vocabulary is a collection of terms. - + t-statistic based increased differential gene expression - + A t-statistic based increased differential gene expression is a differential gene expression ratio in which the t-statistic is greater than zero. - + - + - + - + - + - + - + - - + + - + - + - + - + - - + + - + 0.0 @@ -12561,50 +12561,50 @@ of endpoints (a start point and an endpoint). t-statistic based decreased differential gene expression - + A t-statistic based decreased differential gene expression is a differential gene expression ratio in which the t-statistic is less than zero. - + - + - + - + - + - + - + - - + + - + - + - + - + - - + + - + 0.0 @@ -12613,7 +12613,7 @@ of endpoints (a start point and an endpoint). date of database submission A date of database submission refers to the moment in time in which some information was submitted/received to a database system. - + @@ -12621,7 +12621,7 @@ of endpoints (a start point and an endpoint). liquid solution A liquid solution is a heterogeneous substance in a liquid state. - + @@ -12629,7 +12629,7 @@ of endpoints (a start point and an endpoint). to remove a covalent bond to remove a covalent bond is the capability to covalently modify a chemical entity by removing a covalent bond. - + @@ -12637,7 +12637,7 @@ of endpoints (a start point and an endpoint). to add a covalent bond to add a covalent bond is the capability to covalently modify a chemical entity by adding a covalent bond. - + @@ -12645,40 +12645,40 @@ of endpoints (a start point and an endpoint). to modify electronically to modify electronically is the capability to change the electronic properties of an object. - + concentration - + concentration is the quantity of a constituent divided by the total volume of a mixture. - + - + - + - + - + - + - + - - + + - + @@ -12690,7 +12690,7 @@ of endpoints (a start point and an endpoint). pH is a measure of the activity of the (solvated) hydrogen ion. pH is defined as the decimal logarithm of the reciprocal of the hydrogen ion activity, aH+, in a solution. - + @@ -12699,7 +12699,7 @@ of endpoints (a start point and an endpoint). homogeneous is a quality that describes the uniform composition of an object. - + @@ -12707,7 +12707,7 @@ of endpoints (a start point and an endpoint). heterogeneous homogeneous is a quality that describes the varied composition of an object. - + @@ -12715,7 +12715,7 @@ of endpoints (a start point and an endpoint). structural quality A structural quality is a quality of an object that describes its structure. - + @@ -12723,7 +12723,7 @@ of endpoints (a start point and an endpoint). rigid rigid is the quality of maintaining structural integrity (and not bending) under pressure. - + @@ -12731,7 +12731,7 @@ of endpoints (a start point and an endpoint). bent bent is the quality of a line being sharply curved or having an angle. - + @@ -12739,7 +12739,7 @@ of endpoints (a start point and an endpoint). curved curved is the quality of a line that deviates from straightness in a smooth, continuous fashion. - + @@ -12749,7 +12749,7 @@ of endpoints (a start point and an endpoint). electronic configuration electronic structure is the electron configuration is the distribution of electrons of an atom or molecule (or other physical structure) in atomic or molecular orbitals. the electron configuration of the neon atom is 1s2 2s2 2p6. - + @@ -12757,40 +12757,40 @@ of endpoints (a start point and an endpoint). crystal structure A crystal structure is the arrangement of atoms or molecules in a crystalline liquid or solid. - + to interact and to be interacted with - + to interact and to be interacted with is a mutual disposition of interacting objects. - + - + - + - - - + + + - + - - + + - + @@ -12801,7 +12801,7 @@ of endpoints (a start point and an endpoint). to gain a covalent bond to gain a covalent bond is the capability of a chemical entity to have bonds added. - + @@ -12809,7 +12809,7 @@ of endpoints (a start point and an endpoint). to lose a covalent bond to lose a covalent bond is the capability of a chemical entity to have bonds removed. - + @@ -12817,7 +12817,7 @@ of endpoints (a start point and an endpoint). to ingest to ingest is the capability to take into the body by the mouth for digestion or absorption. - + @@ -12825,16 +12825,16 @@ of endpoints (a start point and an endpoint). to produce to produce is the capability to create new objects - + pathway - biological pathway A pathway is an effective specification that outlines a set of actions that forms a way to achieve an objective. - + biological pathway + @@ -12842,17 +12842,17 @@ of endpoints (a start point and an endpoint). centrality measure A central tendency measure is a central value or a typical value for a probability distribution. - + mean - A mean is the central tendency of a collection of numbers taken as the sum of the numbers divided by the size of the collection. - arithmeritic mean average - + arithmeritic mean + A mean is the central tendency of a collection of numbers taken as the sum of the numbers divided by the size of the collection. + @@ -12860,7 +12860,7 @@ of endpoints (a start point and an endpoint). median A median is the numerical value separating the higher half of a sample, a population, or a probability distribution, from the lower half. - + @@ -12868,7 +12868,7 @@ of endpoints (a start point and an endpoint). mode A mode is the value that appears most often in a set of data. - + @@ -12876,20 +12876,20 @@ of endpoints (a start point and an endpoint). sum A sum is the result of adding a set of values together. - + minimal value - - A minimal value is smallest value of an attribute for the entities in the defined set. + min - + A minimal value is smallest value of an attribute for the entities in the defined set. + - + @@ -12899,13 +12899,13 @@ of endpoints (a start point and an endpoint). maximal value - + max A maximal value is largest value of an attribute for the entities in the defined set. - + - + @@ -12916,7 +12916,7 @@ of endpoints (a start point and an endpoint). member count A count of the instances of a class or members in a collection. - + @@ -12925,7 +12925,7 @@ of endpoints (a start point and an endpoint). A union is a list of all of the values of an attribute for the entities in the defined set. - + @@ -12933,53 +12933,53 @@ of endpoints (a start point and an endpoint). intersection An intersection is a list of only the values of an attribute for the entities in the defined set where all entities have that value. - + sequence - + + ordered list A sequence is an ordered list of entities. Like a set, it contains members (also called elements, or terms). For example, (M, A, R, Y) is a sequence of letters that differs from (A, R, M, Y), as the ordering matters, and (1, 1, 2, 3, 5, 8), which contains the number 1 at two different positions, is a valid sequence. - ordered list - + - + - + - + - + - + - + - - - + + + - + - - + + - + @@ -12990,7 +12990,7 @@ of endpoints (a start point and an endpoint). gene-disease association linked with causal mutation A gene-variant disease association in which a mutation in the gene/protein results in the development or maintenance of the disease. - + @@ -12999,7 +12999,7 @@ of endpoints (a start point and an endpoint). A gene disease association in which the gene is a therapeutic marker for the disease. gene-disease association arising from a therapeutic role of the gene/protein - + @@ -13007,7 +13007,7 @@ of endpoints (a start point and an endpoint). gene-disease biomarker association A gene-disease association in which the gene/protein is involved in the etiology or maintenance of the disease. - + @@ -13016,7 +13016,7 @@ of endpoints (a start point and an endpoint). gene variant-disease association A gene-disease association in which a sequence variation (a mutation, a SNP) is associated with the disease. - + @@ -13024,7 +13024,7 @@ of endpoints (a start point and an endpoint). gene-disease association linked with altered gene expression A gene-disease association in which the disease phenotype is associated with an altered expression of the gene. - + @@ -13033,7 +13033,7 @@ of endpoints (a start point and an endpoint). A gene-disease association in which the disease phenotype is associated with post-translational modifications in the protein product. methylation or phosphorylation of protein product - + @@ -13041,7 +13041,7 @@ of endpoints (a start point and an endpoint). regulation of transcription A process that modulates the frequency, rate or extent of transcription. - + @@ -13049,7 +13049,7 @@ of endpoints (a start point and an endpoint). regulation of translation A process that modulates the frequency, rate or extent of translation. - + @@ -13057,7 +13057,7 @@ of endpoints (a start point and an endpoint). regulation of molecular quantity A process that modulates the frequency, rate or extent of process involved in the creation or destruction of a molecule. - + @@ -13065,19 +13065,19 @@ of endpoints (a start point and an endpoint). regulation of molecular production A process that modulates the frequency, rate or extent of process involved in the production of a molecule. - + regulation of molecular degradation - + A process that modulates the frequency, rate or extent of process involved in the destruction of a molecule. - + - + @@ -13087,12 +13087,12 @@ of endpoints (a start point and an endpoint). protein mediated regulation of translation - + A process mediated by a protein that modulates the frequency, rate or extent of translation. - + - + @@ -13102,12 +13102,12 @@ of endpoints (a start point and an endpoint). rna mediated regulation of translation - + A process mediated by rna that modulates the frequency, rate or extent of translation. - + - + @@ -13118,7 +13118,7 @@ of endpoints (a start point and an endpoint). process maintenance The process of maintaining some the frequency, rate or extent of another process. - + @@ -13126,7 +13126,7 @@ of endpoints (a start point and an endpoint). increased frequency of process from increased regulation The increase of regulation leads to a increased occurence of processes of the target type. - + @@ -13134,7 +13134,7 @@ of endpoints (a start point and an endpoint). decreased frequency of process from increased regulation The increase of regulation leads to a decreased occurence of processes of the target process type. - + @@ -13142,7 +13142,7 @@ of endpoints (a start point and an endpoint). regulation of process frequency regulation of a process duration is a process that modulates the frequency of another process relative to some reference process. - + @@ -13150,7 +13150,7 @@ of endpoints (a start point and an endpoint). regulation of process duration regulation of a process duration is a process that modulates the duration of another process relative to some reference process. - + @@ -13158,7 +13158,7 @@ of endpoints (a start point and an endpoint). increased duration of process from increased regulation increased duration of process from increased regulation is a process in which the duration of the target process is increased as a result of increased regulation. - + @@ -13166,7 +13166,7 @@ of endpoints (a start point and an endpoint). decreased duration of process from increased regulation decreased duration of process from increased regulation is a process in which the duration of the target process is decreased as a result of increased regulation. - + @@ -13175,7 +13175,7 @@ of endpoints (a start point and an endpoint). heating the solution causes greater diffusion of a chemical. regulation of a process spatial extent is a process that modulates the spatial extent of another process relative to some reference process. - + @@ -13183,7 +13183,7 @@ of endpoints (a start point and an endpoint). increased spatial extent of process from increased regulation The increase of regulation leads to a increased spatial extent of the target process. - + @@ -13191,7 +13191,7 @@ of endpoints (a start point and an endpoint). decreased spatial extent of process from decreased regulation The increase of regulation leads to a decreased spatial extent of the target process. - + @@ -13199,7 +13199,7 @@ of endpoints (a start point and an endpoint). maintenance of spatial extent of process maintenance of spatial extent of process is a regulation of a process' spatial extent within some specified parameter. - + @@ -13207,7 +13207,7 @@ of endpoints (a start point and an endpoint). maintenance of duration of process maintenance of duration of process is a process that regulates a target process to maintain its duration within an expected interval. - + @@ -13215,19 +13215,19 @@ of endpoints (a start point and an endpoint). maintenance of frequency of process maintenance of frequency of process is a process that regulates the number of occurences of a target process type to a specified number or interval. - + regulation of object quantity - + regulation of a participant quantity is the regulation of a process in which the quantity of its partcipants is changed. - + - + @@ -13238,7 +13238,7 @@ of endpoints (a start point and an endpoint). increased object production from increased regulation increased regulation leads to an increase in the number of target objects of a specified type. - + @@ -13246,7 +13246,7 @@ of endpoints (a start point and an endpoint). decreased object production from increased regulation increased regulation leads to a decrease in the number of target objects of a specified type. - + @@ -13254,7 +13254,7 @@ of endpoints (a start point and an endpoint). increased object consumption from increased regulation increased regulation leads to an increase in the consumption of an object of specified type. - + @@ -13262,7 +13262,7 @@ of endpoints (a start point and an endpoint). decreased object consumption from increased regulation increased regulation leads to an decrease in the consumption of an object of specified type. - + @@ -13270,7 +13270,7 @@ of endpoints (a start point and an endpoint). regulation of object consumption A process that modulates the frequency, rate or extent of process involved in the consumption of an object. - + @@ -13278,7 +13278,7 @@ of endpoints (a start point and an endpoint). regulation of object production regulation of a participant quantity is the regulation of a process in which the quantity of a selected participant is increased. - + @@ -13286,7 +13286,7 @@ of endpoints (a start point and an endpoint). maintenance of quantity of object production maintenance of quantity of object production is a regulation of object production in which the number of objects produced is held more or less constant. - + @@ -13294,7 +13294,7 @@ of endpoints (a start point and an endpoint). maintenance of level of object consumption regulation of a participant quantity is the regulation of a process in which the quantity of a selected participant is maintained at a steady level. - + @@ -13302,7 +13302,7 @@ of endpoints (a start point and an endpoint). number of objects produced number of objects produced is a count of objects that were produced in some process. - + @@ -13310,7 +13310,7 @@ of endpoints (a start point and an endpoint). number of objects consumed number of objects consumed is a count of objects that were consumed in some process. - + @@ -13318,7 +13318,7 @@ of endpoints (a start point and an endpoint). difference in number of objects produced A difference in number of objects produced is a count of the number of objects produced with respect to a second variable (space, time, etc) - + @@ -13326,7 +13326,7 @@ of endpoints (a start point and an endpoint). increase in number of objects produced An increase in the number of objects produced is the positive value of a difference in number of objects produced. - + @@ -13334,7 +13334,7 @@ of endpoints (a start point and an endpoint). decrease in number of objects produced An decrease in the number of objects produced is the negative value of a difference in number of objects produced. - + @@ -13342,19 +13342,19 @@ of endpoints (a start point and an endpoint). user account user account allows a user to authenticate to system services and be granted authorization to access them. - + annotation - + An annotation is a written explanatory or critical description, or other in-context information (e.g., pattern, motif, link), that has been associated with data or other types of information. - + - + @@ -13365,19 +13365,19 @@ of endpoints (a start point and an endpoint). audio recording An audio recording is an electrical or mechanical inscription and re-creation of sound waves, such as spoken voice, singing, instrumental music, or sound effects. - + issue - + An issue is a single instance of a periodically published journal, magazine, or newspaper. - + - + @@ -13388,16 +13388,16 @@ of endpoints (a start point and an endpoint). slideshow A slideshow is a visual presentation of information contained within a collection of slides. - + database cross-reference - dbxref A database cross-reference is an association between one data item and another. - + dbxref + @@ -13405,19 +13405,19 @@ of endpoints (a start point and an endpoint). exact cross-reference An exact cross-reference is a database cross-reference in which one entity is equivalent to the other based on all the entitie's attributes (minus the source). - + double stranded DNA - + double stranded nucleic acid is a molecular complex composed of two weakly connected deoxyribonucleic acids. - + - + @@ -13427,29 +13427,29 @@ of endpoints (a start point and an endpoint). nucleic acid strand - + - + A nucleic acid strand is a single-stranded nucleic acid that is part of a double stranded nucleic acid complex. - + - + - + - + - + - + - + @@ -13461,7 +13461,7 @@ of endpoints (a start point and an endpoint). The positive nucleic acid strand refers to the strand that is to be read 5' to 3'. forward strand - + @@ -13470,19 +13470,19 @@ of endpoints (a start point and an endpoint). The negative nucleic acid strand is the strand that is that is complimentary to the forward strand and appears from 3' to 5'. reverse strand - + double stranded nucleic acid - + double stranded nucleic acid is a molecular complex composed of two weakly connected nucleic acids. - + - + @@ -13493,12 +13493,12 @@ of endpoints (a start point and an endpoint). double stranded RNA - + double stranded nucleic acid is a molecular complex composed of two weakly connected ribonucleic acids. - + - + @@ -13510,7 +13510,7 @@ of endpoints (a start point and an endpoint). full agreement full agreement is the result of consensus decision making when members of the group unanimously agree. - + @@ -13518,7 +13518,7 @@ of endpoints (a start point and an endpoint). mass spectrometry experiment A mass spectrometry experiment is an experiment that involves the use of a mass spectrometer. - + @@ -13526,7 +13526,7 @@ of endpoints (a start point and an endpoint). full disagreement full agreement is the result of consensus decision making when members of the group unanimously disagree. - + @@ -13534,9 +13534,9 @@ of endpoints (a start point and an endpoint). ribosomal RNA gene http://purl.obolibrary.org/obo/SO_0001637 - rRNA gene A ribosomal RNA gene is a gene that codes for a ribosomal RNA molecule. - + rRNA gene + @@ -13544,7 +13544,7 @@ of endpoints (a start point and an endpoint). statement A statement is a proposition that is either (a) a meaningful declarative sentence that is either true or false, or (b) that which a true or false declarative sentence asserts. - + @@ -13552,7 +13552,7 @@ of endpoints (a start point and an endpoint). slope A slope or gradient of a line describes its steepness, incline, or grade. A higher slope value indicates a steeper incline. Slope is normally described by the ratio of the "rise" divided by the "run" between two points on a line. - + @@ -13560,7 +13560,7 @@ of endpoints (a start point and an endpoint). software process identifier A software process identifier is an identifier for a software process in some operating system. - + @@ -13568,19 +13568,19 @@ of endpoints (a start point and an endpoint). hypothetical hypothetical is the quality of an entity that is conjectured to exist. - + database row - + A database row is a row that is part of a database table. - + - + @@ -13593,7 +13593,7 @@ of endpoints (a start point and an endpoint). http://en.wikipedia.org/wiki/SADI a SADI semantic web service is a semantic web service that follows the SADI specification sadi - + @@ -13601,7 +13601,7 @@ of endpoints (a start point and an endpoint). semantic web service a semantic web service is a web service that provides a formal, machine understanble description of its functionality. - + @@ -13610,7 +13610,7 @@ of endpoints (a start point and an endpoint). http://en.wikipedia.org/wiki/REST a REST web service is a web service that provides functionality according to the Representational State Transfer (REST) specification. - + @@ -13619,7 +13619,7 @@ of endpoints (a start point and an endpoint). http://en.wikipedia.org/wiki/SOAP a SOAP web service is a web service that implements Simple Object Access Protocol (SOAP). - + @@ -13627,20 +13627,20 @@ of endpoints (a start point and an endpoint). web service invocation A web service invocation involves the execution of a web service. - + SADI web service invocation - + A SADI web service invocation is the excution of a SADI web service. sadi - + - + @@ -13651,17 +13651,17 @@ of endpoints (a start point and an endpoint). media media are audo/visual/audiovisual modes of communicating information for mass consumption. - + behaviour - Behaviour is the set of actions and mannerisms made by systems (biological or otherwise) in response to stimuli or inputs, whether internal or external, conscious or subconscious, overt or covert, and voluntary or involuntary. - core behaviour+ - + core + Behaviour is the set of actions and mannerisms made by systems (biological or otherwise) in response to stimuli or inputs, whether internal or external, conscious or subconscious, overt or covert, and voluntary or involuntary. + @@ -13669,7 +13669,7 @@ of endpoints (a start point and an endpoint). history history is a sequence of past events. - + @@ -13677,7 +13677,7 @@ of endpoints (a start point and an endpoint). structural motif A structural motif is a pattern in a structure formed by the spatial arrangement of atoms. - + @@ -13685,7 +13685,7 @@ of endpoints (a start point and an endpoint). consensus consensus is an acceptable resolution, one that can be supported, even if not the preferred outcome for each individual. - + @@ -13693,7 +13693,7 @@ of endpoints (a start point and an endpoint). increased molecular degradation from increased regulation A process that increases the frequency, rate or extent of process involved in the destruction of a molecule as a result of increased regulation. - + @@ -13701,7 +13701,7 @@ of endpoints (a start point and an endpoint). decreased molecular degradation from decreased regulation A process that decreases the frequency, rate or extent of process involved in the destruction of a molecule as a result of decreased regulation. - + @@ -13709,58 +13709,58 @@ of endpoints (a start point and an endpoint). increased molecular degradation from decreased regulation A process that increases the frequency, rate or extent of process involved in the destruction of a molecule as a result of decreased regulation. - + decreased molecular degradation from increased regulation - - + + A process that decreases the frequency, rate or extent of process involved in the destruction of a molecule as a result of increased regulation. - + - - - - - - - + - + - + - + - + - + - - + + - + + + + + + + increased molecular production from increased regulation A process that increases the frequency, rate or extent of process involved in the production of a molecule as a result of increased regulation. - + @@ -13768,7 +13768,7 @@ of endpoints (a start point and an endpoint). decreased molecular production from increased regulation A process that decreases the frequency, rate or extent of process involved in the production of a molecule as a result of increased regulation. - + @@ -13776,7 +13776,7 @@ of endpoints (a start point and an endpoint). increased molecular production from decreased regulation A process that increases the frequency, rate or extent of process involved in the production of a molecule as a result of decreased regulation. - + @@ -13784,68 +13784,68 @@ of endpoints (a start point and an endpoint). decreased molecular production from decreased regulation A process that decreases the frequency, rate or extent of process involved in the production of a molecule as a result of decreased regulation. - + increased chemical destruction - - + + increased chemical destruction is a process in which there is an increase in the amount of chemical destroyed relative to some reference process - + - + - + - + - + - + - + - + - - + + - + - + - + - + - + - + - - + + - + @@ -13855,93 +13855,93 @@ of endpoints (a start point and an endpoint). decreased chemical destruction - - - + + + decreased chemical destruction is a process in which there is a decrease in the amount of chemical destroyed relative to some reference process - + + + + + + + - + - + - + - + - + - + - + - - + + - + - + - + - + - + - + - - + + - + - - - - - - assertional qualifier - + An assertional qualifier is the quality of affirmation, either being positive or negative. - + - + - + - + - + - + @@ -13952,7 +13952,7 @@ of endpoints (a start point and an endpoint). positive is an assertional qualifier that expresses the validity or truth of a basic assertion. - + @@ -13960,7 +13960,7 @@ of endpoints (a start point and an endpoint). negative negative is an assertional qualifier that expresses the falsity or lack of truth of a basic assertion. - + @@ -13968,7 +13968,7 @@ of endpoints (a start point and an endpoint). intensity intensity is a quality that represents the strength or degree of something. - + @@ -13976,7 +13976,7 @@ of endpoints (a start point and an endpoint). mild mild is a qualitative intensity value that is more intense than weak, but less intense than moderate. - + @@ -13984,7 +13984,7 @@ of endpoints (a start point and an endpoint). moderate moderate is a qualitative intensity value that is more intense than mild, but less intense than strong. - + @@ -13992,7 +13992,7 @@ of endpoints (a start point and an endpoint). severe severe is a qualitative intensity value that is more intense than strong, but less intense than fatal. - + @@ -14000,7 +14000,7 @@ of endpoints (a start point and an endpoint). fatal fatal is a qualitative intensity value that is more intense than severe, leading to the death/non-functioning of a system. - + @@ -14008,7 +14008,7 @@ of endpoints (a start point and an endpoint). strong strong is a qualitative intensity value that is more intense than moderate, but less intense than severe. - + @@ -14016,7 +14016,7 @@ of endpoints (a start point and an endpoint). weak weak is a qualitative intensity value that is more intense than none, but less intense than mild. - + @@ -14024,7 +14024,7 @@ of endpoints (a start point and an endpoint). to test a hypothesis to test a hypothesis is the capability to evaluate the truth value of a proposition based on gathered evidence. - + @@ -14032,7 +14032,7 @@ of endpoints (a start point and an endpoint). to characterize to characterize is the capability to classify the attributes or features of an entity against a reference classification. - + @@ -14040,7 +14040,7 @@ of endpoints (a start point and an endpoint). to describe to describe is the capabilty to communicate facts about an entity. - + @@ -14048,7 +14048,7 @@ of endpoints (a start point and an endpoint). 5' splice site The 5' splice site is the terminal region of an exon that is 5' to the intron that is to be excised. - + @@ -14056,7 +14056,7 @@ of endpoints (a start point and an endpoint). 3' splice site The 3' splice site is the terminal region of an exon that is 3' to the intron that is to be excised. - + @@ -14064,7 +14064,7 @@ of endpoints (a start point and an endpoint). amino acid An amino acid is an organic molecule composed of a carbon bonded to four different groups: a carboxyl group, an amino group, an R group, and a hydrogen atom. In the case of glycine, the R group is another hydrogen atom. - + @@ -14072,7 +14072,7 @@ of endpoints (a start point and an endpoint). cis regulatory element A cisregulatory element is a DNA sequence located on the same DNA strand or chromosome as the gene whose expression it affects. - + @@ -14080,20 +14080,20 @@ of endpoints (a start point and an endpoint). trans-regulatory element A trans-regulatory element is a DNA sequence associated with the regulation of a gene located outside the genomic region supporting the corresponding structural DNA region of the trans-regulatory element (i.e., a different DNA strand or different chromosome). - + small cytoplasmic RNA (scRNA) gene - + http://purl.obolibrary.org/obo/SO_0001266 A small cytoplasmic RNA (scRNA) gene is a gene that encodes a small (7S; 129 nucleotides) RNA molecule found in the cytosol and rough endoplasmic reticulum that are normally associated with proteins that are involved in specific selection and transport of other proteins. - + - + @@ -14103,13 +14103,13 @@ of endpoints (a start point and an endpoint). small nuclear RNA (snRNA) gene - + http://purl.obolibrary.org/obo/SO_0001268 A small nuclear RNA (snRNA) gene is a gene that encodes a small niuclear RNA molecule. - + - + @@ -14119,13 +14119,13 @@ of endpoints (a start point and an endpoint). small nucleolar RNA (snoRNA) gene - + http://purl.obolibrary.org/obo/SO_0001267 A small nucleolar RNA (snoRNA) gene is a gene that encodes a small RNA that are associated with the eukaryotic nucleus as components of small nucleolar ribonucleoproteins. - + - + @@ -14135,15 +14135,15 @@ of endpoints (a start point and an endpoint). transfer RNA (tRNA) gene - + http://purl.obolibrary.org/obo/SO_0001272 A transfer RNA (tRNA) gene is a gene that codes for a tRNA used in the translation of a messenger RNA (mRNA) to produce a protein product. solube RNA (sRNA) gene tRNA gene - + - + @@ -14153,13 +14153,13 @@ of endpoints (a start point and an endpoint). small cytoplasmic RNA (scRNA) - + A small cytoplasmic RNA (scRNA) molecule is a small (7S; 129 nucleotides) RNA molecule found in the cytosol and rough endoplasmic reticulum that are normally associated with proteins that are involved in specific selection and transport of other proteins. scRNA - + - + @@ -14171,7 +14171,7 @@ of endpoints (a start point and an endpoint). A transfer RNA (tRNA) is an RNA molecule that aids in the translation of a messenger RNA (mRNA) to produce a protein product. tRNA - + @@ -14180,7 +14180,7 @@ of endpoints (a start point and an endpoint). A small nuclear RNA (snRNA) is a small RNA molecule that is located in the nucleus of a cell. snRNA - + @@ -14189,7 +14189,7 @@ of endpoints (a start point and an endpoint). A small nucleolar RNA (snoRNA) is a small RNA that are associated with the eukaryotic nucleus as components of small nucleolar ribonucleoproteins. snoRNA - + @@ -14197,7 +14197,7 @@ of endpoints (a start point and an endpoint). non-protein coding RNA (ncRNA) A non-protein coding RNA (ncRNA) is a RNA molecular that cannot be used as a template for generating a protein product. - + @@ -14205,7 +14205,7 @@ of endpoints (a start point and an endpoint). data collection device A data collection device is a device that collects information about one or more objects. - + @@ -14214,7 +14214,7 @@ of endpoints (a start point and an endpoint). http://purl.obolibrary.org/obo/OBI_0000049 A mass spectrometer is a device that identifies ions based on their mass to charge ratio using an electromagnetic field. - + @@ -14224,7 +14224,7 @@ of endpoints (a start point and an endpoint). http://purl.obolibrary.org/obo/OBI_0000052 A microarray device is a device that identifies the binding of a target substance to a physically immobile substrate placed in an array or lattice. microarray platform - + @@ -14232,7 +14232,7 @@ of endpoints (a start point and an endpoint). to identify to identify is the capability to determine the identity of something. - + @@ -14242,7 +14242,7 @@ of endpoints (a start point and an endpoint). http://purl.obolibrary.org/obo/OBI_0000566 A nuclear magnetic resonance (NMR) device is a device that applies a magnetic field to perturb nuclei with an odd number of protons and/or of neutrons in order to hav them absort and re-emit electromagnetic radiation. nuclear magnetic resonance device - + @@ -14251,7 +14251,7 @@ of endpoints (a start point and an endpoint). A catalog is a systemic collection of items of the same type. registry - + @@ -14259,7 +14259,7 @@ of endpoints (a start point and an endpoint). likelihood Likelihood is the hypothetical probability that an event that has already occurred would yield a specific outcome. - + @@ -14267,7 +14267,7 @@ of endpoints (a start point and an endpoint). log likelihood Log likelihood is the natural logarithm of the likelihood function - + @@ -14276,7 +14276,7 @@ of endpoints (a start point and an endpoint). A standard score is the (signed) number of standard deviations an observation or datum is above the mean. z-value, z-score, normal score, standardadized variable. - + @@ -14286,7 +14286,7 @@ of endpoints (a start point and an endpoint). (0,1) is an open interval that is greater than 0 and less than 1. an open interval is an interval that does not include its endpoints. - + @@ -14296,27 +14296,27 @@ of endpoints (a start point and an endpoint). A closed interval is an interval that includes its endpoints, and is denoted with square brackets. [0,1] is a closed interval that is greater than or equal to 0 and less than or equal to 1. - + chemical-pathway association - - + + a chemical-pathway association is an association between a chemical and a pathway. drug-pathway association - + - + - + @@ -14327,7 +14327,7 @@ of endpoints (a start point and an endpoint). left open interval a left open interval is an interval in which there is no element that is smaller than all other elements. - + @@ -14335,7 +14335,7 @@ of endpoints (a start point and an endpoint). right open interval a right open interval is an interval in which there is no element that is greater than all other elements. - + @@ -14343,7 +14343,7 @@ of endpoints (a start point and an endpoint). right closed interval a right closed interval is an interval in which there is a real number that is larger than all of its elements. - + @@ -14351,7 +14351,7 @@ of endpoints (a start point and an endpoint). left closed interval a left closed interval is an interval in which there is a real number that is smaller than all its elements. - + @@ -14359,7 +14359,7 @@ of endpoints (a start point and an endpoint). pharmacokinetic pathway a pharmacokinetic pathway is a metabolic pathway which describes the metabolism of a drug molecule. - + @@ -14367,26 +14367,26 @@ of endpoints (a start point and an endpoint). pharmacodynamic pathway a pharmacodynamic pathay is a regulatory pathway in which a drug molecule regulates the activity of one or more components organized in a pathway. - + chemical-gene assocation - - + + a chemical-gene assocation is an assocation between a chemical and a gene. - + - + - + @@ -14396,12 +14396,12 @@ of endpoints (a start point and an endpoint). set item - + set item is an item in a set. - + - + @@ -14411,12 +14411,12 @@ of endpoints (a start point and an endpoint). collection item - + a collection item is an item in a collection. - + - + @@ -14426,19 +14426,19 @@ of endpoints (a start point and an endpoint). list item - - + + a list item is an item in a list. - + - + - + @@ -14448,38 +14448,38 @@ of endpoints (a start point and an endpoint). ordered list item - + an ordered list item is an item in an ordered list. - + - + - + - + - + - - - + + + - + - - + + - + @@ -14488,43 +14488,43 @@ of endpoints (a start point and an endpoint). anatomical entity - + an anatomical entity is an object that is a structural part (material or immaterial) of a biological entity. - + - + - + - - - + + + - + - + - + - + - + - - + + - + @@ -14535,7 +14535,7 @@ of endpoints (a start point and an endpoint). zygosity zygosity is the quality pertaining to the allelic complement of a biological system at a single locus on the DNA. - + @@ -14543,7 +14543,7 @@ of endpoints (a start point and an endpoint). homozygous homozygous is the quality of a biological organism in which there are two identical alleles at a given locus. - + @@ -14551,7 +14551,7 @@ of endpoints (a start point and an endpoint). heterozygous homozygous is the quality of a biological organism in which there are two different alleles at a given locus. - + @@ -14559,7 +14559,7 @@ of endpoints (a start point and an endpoint). hemizygous hemizygous is the quality of a biological organism in which, based on the ploidy of the organism, there is half the number of alleles than normal at a given locus. - + @@ -14567,7 +14567,7 @@ of endpoints (a start point and an endpoint). nullizygous nullizygous is the quality of a biological organism in which there are no allelles at a given locus. - + @@ -14575,7 +14575,7 @@ of endpoints (a start point and an endpoint). parental transmission parental transmition is the quality of a biological organism in which the (genetic) material is transmitted from a parental unit. - + @@ -14584,7 +14584,7 @@ of endpoints (a start point and an endpoint). maternally transmitted is the quality of a biological organism in which the (genetic) material is transmitted from the maternal line. - + @@ -14592,7 +14592,7 @@ of endpoints (a start point and an endpoint). paternally transmitted paternally transmitted is the quality of a biological organism in which the (genetic) material is transmitted from the paternal line. - + @@ -14600,7 +14600,7 @@ of endpoints (a start point and an endpoint). helicity helicity is the quality of being helical - + @@ -14608,7 +14608,7 @@ of endpoints (a start point and an endpoint). circularly helical a circularly helical quality is the quality of a helix that is connected in a circle or loop. - + @@ -14617,7 +14617,7 @@ of endpoints (a start point and an endpoint). left-handed helical quality is the quality in which a clockwise screwing motion moves the helix towards the observed along the line of sight along the helix's axis. - + @@ -14625,7 +14625,7 @@ of endpoints (a start point and an endpoint). right-handed helical right-handed helical quality is the quality in which a clockwise screwing motion moves the helix away from the observed along the line of sight along the helix's axis. - + @@ -14633,7 +14633,7 @@ of endpoints (a start point and an endpoint). coding frame offset a coding frame offset is a numeric value that indicates the number of bases from a reference start codon position. - + @@ -14641,7 +14641,7 @@ of endpoints (a start point and an endpoint). coding sequence a coding sequence is a sequence of nucleotides which encode a RNA or protein product.. - + @@ -14649,7 +14649,7 @@ of endpoints (a start point and an endpoint). humiliation Humiliation is the abasement of pride, which creates mortification or leads to a state of being humbled or reduced to lowliness or submission. - + @@ -14657,16 +14657,16 @@ of endpoints (a start point and an endpoint). hunger hunger is the craving for food. - + discouragement - Discouragement is the emtion of having lost confidence or enthusiasm. discouraged - + Discouragement is the emtion of having lost confidence or enthusiasm. + @@ -14674,7 +14674,7 @@ of endpoints (a start point and an endpoint). suicidal suicidal is the emotion of being deeply unhappy or depressed with thoughts of killing one's self. - + @@ -14683,16 +14683,16 @@ of endpoints (a start point and an endpoint). irritability is the negative emotion of quick excitability to annoyance, impatience, or anger. irritable - + indecision - indecisiveness indecision is the emotion of being unable to choose between two or more possible courses of action. - + indecisiveness + @@ -14700,34 +14700,34 @@ of endpoints (a start point and an endpoint). temporal qualifier a temporal qualifier is pertains to the frequency of the event of interest. - + never - none of the time never refers to in none of the occasions. - + none of the time + some of the time - some of the time some refers to in the minority of occasions - + some of the time + most of the time - most refers to in the majority of occasions most of the time - + most refers to in the majority of occasions + @@ -14736,65 +14736,65 @@ of endpoints (a start point and an endpoint). all of the time always indicates that the event occurs at all times. - + quality descriptor - + very poor quality - + poor quality - + neither good nor poor quality - + good quality - + very good quality - + quantity modifier - + ovopub - ovopub+ An ovopub is an information content entity that contains and links to one or more resources and/or statements, including those describing its provenance, and is itself a dereferenceable resource. - + ovopub+ + @@ -14803,7 +14803,7 @@ of endpoints (a start point and an endpoint). A collection ovopub is an ovopub that contains and links to one or more assertion subgraphs and/or ovopubs, as well as statements describing its provenance. It is used to share a specific set of items or restrict a search to the resources contained therein. - + @@ -14811,84 +14811,84 @@ of endpoints (a start point and an endpoint). assertion ovopub An assertion ovopub is an ovopub that contains and links to an assertion subgraph with one or more statements that may be true or false, as well as statements describing its provenance. - + none quantifier - + a little quantifier - + moderately quantifier - + mostly quantifier - + completely quantifier - + satisfaction qualifier - + very dissatisfied qualifier - + dissatisfied qualifier - + neither satisfied or dissatisfied qualifier - + satisfied qualifier - + excellent quality - + @@ -14896,67 +14896,67 @@ of endpoints (a start point and an endpoint). date of issue the date at which an information content entity was made public. - + author list - + an ordered list of authors. - + - + - + - + - + - + - + - - - + + + - + - - + + - + - + - + - + - + - + - + @@ -14965,33 +14965,33 @@ of endpoints (a start point and an endpoint). ordered list - + an ordered list is a list in which items are sequentially ordered. - + - + - + - + - + - + - + - - + + - + @@ -15002,7 +15002,7 @@ of endpoints (a start point and an endpoint). middle name a middle name is a name assigned to an individual that is not the first or last name. - + @@ -15010,7 +15010,7 @@ of endpoints (a start point and an endpoint). middle initial a middle initial is an abbreviated middle name. - + @@ -15018,7 +15018,7 @@ of endpoints (a start point and an endpoint). telephone number a telephone number is an identifier used to connect to a physical device capable of transfering voice or data over a network. - + @@ -15026,7 +15026,7 @@ of endpoints (a start point and an endpoint). cellular phone number a cellular phone number is a number to connect to a mobile device - + @@ -15034,7 +15034,7 @@ of endpoints (a start point and an endpoint). fax number a fax number is a number to connect to fax device - + @@ -15043,7 +15043,7 @@ of endpoints (a start point and an endpoint). IP address an IP number is an number to connect to a device on the internet. - + @@ -15051,7 +15051,7 @@ of endpoints (a start point and an endpoint). email address an email address is an identifier to send mail to particular electronic mailbox. - + @@ -15059,7 +15059,7 @@ of endpoints (a start point and an endpoint). work phone number a work phone number is the number to connect to an phone at a place of work. - + @@ -15067,7 +15067,7 @@ of endpoints (a start point and an endpoint). home phone number a home phone number is the number to connect to an phone at a place of residence. - + @@ -15075,29 +15075,55 @@ of endpoints (a start point and an endpoint). status descriptor status descriptor is a descriptor for the state of a process or object. - + + + + + + protein expression value + + A protein expression value is a quantity obtained from a protein expression experiment. + + + + + + copy number variation + + CNV + copy number variation refers to the number of deletions/duplications of a DNA region as compared to some reference state. + + + + + + single nucleotide variation + + SNV + a single nucleotide variation (SNV) is a nucleotide residue that is a variant compared to some reference nucleic acid sequence. + organism - + A biological organisn is a biological entity that consists of one or more cells and is capable of genomic replication (independently or not). - + - + - + - + - + - + @@ -15107,19 +15133,19 @@ of endpoints (a start point and an endpoint). cell A cell is a biological entity that is contained by a plasma membrane. - + tissue - + A tissue is a mereologically maximal collection of cells that together perform some function. - + - + @@ -15130,7 +15156,7 @@ of endpoints (a start point and an endpoint). organ An organ is a collection of tissues joined in structural unit to serve a common function. - + @@ -15138,10 +15164,10 @@ of endpoints (a start point and an endpoint). chemical entity CHEBI:23367 - chemical+ A chemical entity is a material entity that pertains to chemistry. atom, ion, molecule, chemical substance, - + chemical+ + @@ -15150,19 +15176,19 @@ of endpoints (a start point and an endpoint). A weak submolecular component is a submolecular component that weakly connects submolecular components. - + polypeptide - + A polypeptide is an organic polymer composed of amino acid residues. - + - + @@ -15173,12 +15199,12 @@ of endpoints (a start point and an endpoint). nucleic acid - + A nucleic acid is an organic polymer composed of a sequence of nucleotide residues. - + - + @@ -15189,13 +15215,13 @@ of endpoints (a start point and an endpoint). ribonucleic acid - + A ribonucleic acid is an organic polymer composed of a sequence of ribonucleotide residues. - + - + @@ -15206,12 +15232,12 @@ of endpoints (a start point and an endpoint). deoxyribonucleic acid - + A deoxyribonucleic acid is an organic polymer composed of a sequence of deoxyribonucleotide residues. - + - + @@ -15223,20 +15249,20 @@ of endpoints (a start point and an endpoint). lipid A lipid is a water-insoluable organic molecule. - + chemical interaction - + A chemical interaction is a biochemical process in which chemical entities interact through some set of attractive forces. biopax:Interaction - + - + @@ -15247,49 +15273,49 @@ of endpoints (a start point and an endpoint). primary structure descriptor A primary structure descriptor describes a biomolecular object in terms of a 1D or 2D topology. - + protein sequence - - + + A protein acid sequence is the character representation of the molecular structure of a protein. amino acid sequence polypeptide sequence - + + + + + + + - + - + - + - + - + - + - - + + - - - - - - - + @@ -15299,40 +15325,40 @@ of endpoints (a start point and an endpoint). nucleic acid sequence - - + + A nucleic acid sequence is a symbolic representation of the sequence of nucleic acid residues in a nucleic acid. - + - + + + + + + + - + - + - + - + - + - - + + - - - - - - - + @@ -15342,13 +15368,13 @@ of endpoints (a start point and an endpoint). ribonucleic acid sequence - + A ribonucleic acid sequence is a symbolic representation of the sequence of ribonucleic acid residues in a ribonucleic acid. RNA sequence - + - + @@ -15358,13 +15384,13 @@ of endpoints (a start point and an endpoint). deoxyribonucleic acid sequence - + A deoxyribonucleic acid sequence is a symbolic representation of the sequence of deoxyribonucleic acid residues in a deoxyribonucleic acid. DNA sequence - + - + @@ -15375,19 +15401,19 @@ of endpoints (a start point and an endpoint). biological data biological data is scientific data relevant to biology. - + submolecular entity - + A submolecular entity is a part of a molecular entity. - + - + @@ -15398,7 +15424,7 @@ of endpoints (a start point and an endpoint). secondary structure descriptor A secondary structure descriptor describes local topological patterns in a biopolymer. - + @@ -15406,7 +15432,7 @@ of endpoints (a start point and an endpoint). tertiary structure descriptor A tertiary structure descriptor describes 3D topological patterns in a biopolymer. - + @@ -15414,19 +15440,19 @@ of endpoints (a start point and an endpoint). quaternary structure A quaternary structure descriptor describes topological patterns in a multi-unit biopolymer complex. - + oligosaccharide - + An oligosaccharide is an organic polymer composed of monosaccharides joined by glycosidic bonds. - + - + @@ -15438,20 +15464,20 @@ of endpoints (a start point and an endpoint). genetic polymorphism genetic polymorphism is the description of a difference in genetic composition at some location. - + snp - + single nucleotide polymorphism single nucleotide polymorphism (SNP) is a variation in a single base in the genetic composition between different individuals of the same species. - + - + @@ -15462,7 +15488,7 @@ of endpoints (a start point and an endpoint). genetic data genetic data is data pertaining to genetics. - + @@ -15470,7 +15496,7 @@ of endpoints (a start point and an endpoint). biological sex biological sex is the quality of a biological organism based on reproductive function or organs. - + @@ -15478,7 +15504,7 @@ of endpoints (a start point and an endpoint). monosaccharide A monosaccharide is an organic polymer that consists of a single polyhydroxy aldehyde or ketone group. - + @@ -15486,7 +15512,7 @@ of endpoints (a start point and an endpoint). PDB chain identifier A PDB chain identifier is a alphabetical label to identify a molecule in a structure provided by the Protein DataBank . - + @@ -15494,7 +15520,7 @@ of endpoints (a start point and an endpoint). PDB record identifier A PDB record identifier is an identifier for a PDB generated record. - + @@ -15502,7 +15528,7 @@ of endpoints (a start point and an endpoint). hydrogen bond A hydrogen bond is a weak submolecular interaction formed between a hydrogen atom and a electronegative atom. - + @@ -15510,7 +15536,7 @@ of endpoints (a start point and an endpoint). cation pi interaction A cation pi interaction is an ionic interaction between the localized negative charge of π orbital electrons, located above and below the plane of an aromatic ring, and a positive charge. - + @@ -15520,58 +15546,58 @@ of endpoints (a start point and an endpoint). http://purl.obolibrary.org/obo/SO_0000704 biopax:Gene A gene is part of a nucleic acid that contains all the necessary elements to encode a functional transcript. - + biochemical reaction - + biopax:Conversion biopax:BiochemicalReaction A biochemical reaction is a biochemical process that involves the conversion of at least one chemical participant (target) into another (product) by an enzyme (agent). - + - + - + - + - + - - - + + + - + - - - + + + - + - - + + - + @@ -15581,12 +15607,12 @@ of endpoints (a start point and an endpoint). chemical element - + A chemical element is a (effectively) homogeneous substance composed of one type of atom. - + - + @@ -15597,20 +15623,20 @@ of endpoints (a start point and an endpoint). drug A drug is a chemical entity that regulates a biological process. - + pharmaceutical preparation - + drug A pharmaceutical preparation is a chemical substance approved for use in the medical diagnosis, cure, treatment, or prevention of disease. - + - + @@ -15621,7 +15647,7 @@ of endpoints (a start point and an endpoint). binding site A binding site is a molecular site which when occupied with particular ligands leads to structural transformations that initiatiate new moelcular processes. - + @@ -15629,7 +15655,7 @@ of endpoints (a start point and an endpoint). active site An active site is a molecular site in which a chemical event occurs (structural transformation or conformational change). - + @@ -15637,20 +15663,20 @@ of endpoints (a start point and an endpoint). haplotype A haplotype is one of a set of genomic sequence variants. - + protein - + A protein is an organic polymer that is composed of one or more linear polymers of amino acids. CHEBI:36080 - + - + @@ -15661,7 +15687,7 @@ of endpoints (a start point and an endpoint). atom An atom is composed of a core of protons and/or neutrons which may be surrounded by a cloud of electrons. - + @@ -15669,16 +15695,16 @@ of endpoints (a start point and an endpoint). base pair A base pair is a weak molecular interaction composed of hydrogen bonds between nucleobases. - + biological entity - A biological entity is a heterogeneous substance that contains genomic material or is the product of a biological process. chemical- - + A biological entity is a heterogeneous substance that contains genomic material or is the product of a biological process. + @@ -15686,7 +15712,7 @@ of endpoints (a start point and an endpoint). strong submolecular component A strong submolecular component is a submolecular component that strongly connects submolecular components. - + @@ -15696,7 +15722,7 @@ of endpoints (a start point and an endpoint). PATO:0000384 male is a biological sex of an individual with male sexual organs. - + @@ -15704,7 +15730,7 @@ of endpoints (a start point and an endpoint). molecular site A moleclar site is a spatial region bounded (in part or in whole) by a molecule and may be occupied by other material entities (e.g. drugs). - + @@ -15712,7 +15738,7 @@ of endpoints (a start point and an endpoint). allosteric site An allosteric site is a binding site that when bound to particular ligand changes the conformational state and affects its functionality. - + @@ -15720,7 +15746,7 @@ of endpoints (a start point and an endpoint). biological fluid A biological fluid is a fluid of biological origin. - + @@ -15728,7 +15754,7 @@ of endpoints (a start point and an endpoint). female female is a biological sex of an individual with female sexual organs. - + @@ -15736,7 +15762,7 @@ of endpoints (a start point and an endpoint). evolutionary lineage evolutionary lineage is a sequence of species, that form a line of descent, each new species the direct result of speciation from an immediate ancestral species. - + @@ -15744,19 +15770,19 @@ of endpoints (a start point and an endpoint). cell line A cell line is a collection of genetically identifical cells. - + strain - + A strain is a genetic variant or kind of microorganism. - + - + @@ -15767,29 +15793,29 @@ of endpoints (a start point and an endpoint). phenotype A phenotype is an observable characteristic of an individual. - + life status - + life status is the quality of whether something is alive or dead. - + - + - + - + - + - + @@ -15800,7 +15826,7 @@ of endpoints (a start point and an endpoint). alive is the state of a biological organism that exhibits biological functions. - + @@ -15808,7 +15834,7 @@ of endpoints (a start point and an endpoint). dead dead is the quality of an object in which there is a cessation of all biological functions. - + @@ -15816,7 +15842,7 @@ of endpoints (a start point and an endpoint). family history family history is the systematic narrative and research of past events relating to a specific family, or specific families. - + @@ -15824,7 +15850,7 @@ of endpoints (a start point and an endpoint). generation number generation number is a count of the number of biological reproduction events elapsed from some starting reference point. - + @@ -15832,7 +15858,7 @@ of endpoints (a start point and an endpoint). 5' untranslated region The five prime untranslated region (5' UTR) is a section of messenger RNA (mRNA) and the DNA that codes for it that starts at the +1 position (where transcription begins) and ends one nucleotide before the start codon (usually AUG) of the coding region. - + @@ -15840,7 +15866,7 @@ of endpoints (a start point and an endpoint). bioinformatic data bioinformatic data is data genereated or used for computer-based investigations of biological phenomena. - + @@ -15848,7 +15874,7 @@ of endpoints (a start point and an endpoint). sequence alignment A sequence alignment is the character-based alignment of sequences using some method. - + @@ -15856,7 +15882,7 @@ of endpoints (a start point and an endpoint). multiple sequence alignment A multiple sequence alignment is a sequence alignment involving more than two sequences. - + @@ -15864,7 +15890,7 @@ of endpoints (a start point and an endpoint). pairwise sequence alignment A pairwise sequence alignment is the alignment of exactly 2 sequences. - + @@ -15872,47 +15898,47 @@ of endpoints (a start point and an endpoint). 3' untranslated region A three prime untranslated region (3'-UTR) is the section of messenger RNA (mRNA) that immediately follows the translation termination codon. - + organic submolecule - - + + An organic submolecule is connected region of a molecule. - + - + - + - - - + + + - + - - + + - + - + @@ -15922,33 +15948,33 @@ of endpoints (a start point and an endpoint). organic molecule - + An organic molecular entity is a chemical entity composed of organic atoms (at least carbon, hydrogen, and optionally oxygen, phosphorus, nitrogen) - + - + - + - - - + + + - + - - + + - + @@ -15958,78 +15984,78 @@ of endpoints (a start point and an endpoint). open reading frame - - + + An open reading frame (ORF) is a part of a gene that encodes a protein but does not contain a stop codon. - + - - - - + + + - - - + + + - - - + + + + + 1 - - + + - + - - + + + 1 - - - + + + + - - - + + + - - - - - 1 + + + - - + + - + - - - 1 + + amino acid residue - + An amino acid residue is a part of a molecule that is derived from an amino acid molecule. - + - + @@ -16040,7 +16066,7 @@ of endpoints (a start point and an endpoint). nucleotide residue A nucleotide residue is a part of a molecule that derives from a nucleotide. - + @@ -16048,7 +16074,7 @@ of endpoints (a start point and an endpoint). poison A poison is a drug that is harzardous or toxic to an organism when ingested at a certain quantity. - + @@ -16056,49 +16082,49 @@ of endpoints (a start point and an endpoint). active ingredient An active ingredient is a molecular entity that exhibits biological activity. - + operon - - - - An operon is a collection of contiguous genes transcribed as a single (polycistronic) mRNA. + + + SO:0000178 - - - - - - - + An operon is a collection of contiguous genes transcribed as a single (polycistronic) mRNA. + - + - + + + + + + + gene regulatory component - + A gene regulatory component is a gene component that exerts a regulatory function. - + - + @@ -16109,7 +16135,7 @@ of endpoints (a start point and an endpoint). gene enhancer A gene enhancer is a short region of DNA that can be bound with proteins to enhance transcription levels of genes in a gene cluster. - + @@ -16117,7 +16143,7 @@ of endpoints (a start point and an endpoint). inactive ingredient Aninactive ingredient is a molecular entity that does not exhibit biological activity. - + @@ -16125,7 +16151,7 @@ of endpoints (a start point and an endpoint). to serve as a template for molecular synthesis to serve as a template for molecular synthesis is the capability of a chemical entity to provide the necessary information or scaffold by which another molecule may be produced. - + @@ -16133,7 +16159,7 @@ of endpoints (a start point and an endpoint). to serve as a template for protein synthesis to serve as a template for protein synthesis is the capability of a chemical entity to provide the necessary information or scaffold by which a protein may be produced. - + @@ -16141,7 +16167,7 @@ of endpoints (a start point and an endpoint). to serve as a template for RNA synthesis to serve as a template for RNA synthesis is the capability of a chemical entity to provide the necessary information or scaffold by which an RNA molecule may be produced. - + @@ -16149,35 +16175,35 @@ of endpoints (a start point and an endpoint). to serve as a template for DNA synthesis to serve as a template for DNA synthesis is the capability of a chemical entity to provide the necessary information or scaffold by which a DNA molecule may be produced. - + deoxyribonucleic acid template - + A deoxyribonucleic acid template is a deoxyribonucleic acid that provides the template to synthesize a complementary strand of DNA through transcription. - + - + - + - + - + - + - + - + @@ -16187,12 +16213,12 @@ of endpoints (a start point and an endpoint). deoxyribonucleic acid primer - + A deoxyribonucleic acid primer is a deoxyribonucleic acid that enables the synthesis of a complement strand of DNA by binding to it and acting as a point of transcription initiation. - + - + @@ -16203,26 +16229,26 @@ of endpoints (a start point and an endpoint). to serve as a primer for DNA synthesis to serve as a primer for DNA synthesis is the capability of a short nucleic acid to bind to the 5' end of single strand of DNA template and help initiate DNA replication. - + RNA transcript component - - + + An RNA transcript component is a region of an RNA transcript. - + - + - + @@ -16232,43 +16258,43 @@ of endpoints (a start point and an endpoint). mature mRNA - - - - + + + + A mature RNA is a ribonucleic acid that contains an untranslated region (UTR) and protein coding sequence and lacks introns. - + - + - - + + - + - + - + - + - - + + - + - + - + @@ -16278,12 +16304,12 @@ of endpoints (a start point and an endpoint). pre-mRNA - + Precursor mRNA (pre-mRNA) is a single strand of messenger ribonucleic acid (mRNA) that is synthesized from a DNA template throught transcription. - + - + @@ -16293,33 +16319,33 @@ of endpoints (a start point and an endpoint). mRNA splice variant - + An mRNA splice variant is an mRNA molecule that varies from another mRNA molecule of the same gene origin but having a different final sequence due to differences in its assembly from splice sites. - + - + - + - + - + - + - + - - + + - + @@ -16329,12 +16355,12 @@ of endpoints (a start point and an endpoint). messenger RNA - + A messenger RNA is a ribonucleic acid that contains an untranslated region (UTR) and protein coding sequence and lacks introns. - + - + @@ -16344,13 +16370,13 @@ of endpoints (a start point and an endpoint). dna gene - + A gene that is located on DNA. - + - + @@ -16360,12 +16386,12 @@ of endpoints (a start point and an endpoint). rna gene - + A gene that is located on RNA. - + - + @@ -16375,12 +16401,12 @@ of endpoints (a start point and an endpoint). allele - + An allele is one of a set of sequence variants of a gene. - + - + @@ -16391,20 +16417,20 @@ of endpoints (a start point and an endpoint). ploidy ploidy is the cellular quality relating to the amount of DNA contained in a cell. - + chemical transport - + biopax:Transport chemical transport is the directed movement of a chemical entity by some agent (e.g. transporter). - + - + @@ -16416,19 +16442,19 @@ of endpoints (a start point and an endpoint). biopax:TransportWithBiochemicalReaction active transport is the movement of a substance across a membrane against its concentration gradient (from low to high concentration) and requires chemical energy. - + molecular complex formation - + molecular complex formation is the process of forming a molecular complex from its constituent parts. - + - + @@ -16438,12 +16464,12 @@ of endpoints (a start point and an endpoint). molecular complex dissociation - + molecular complex disassociation is the process of dissambly of a molecular complex into its constitutent parts. - + - + @@ -16454,20 +16480,20 @@ of endpoints (a start point and an endpoint). regulation of biochemical process regulation of biochemical process is a process that changes the frequency, rate or extent of a target biochemical process. - + biochemical activation - + biochemical activation is a molecular interaction that increases the catalytic rate of the target enzyme. - + - + @@ -16477,12 +16503,12 @@ of endpoints (a start point and an endpoint). biochemical inhibition - + biochemical inhibition is a molecular interaction that decreases the catalytic rate of the target enzyme. - + - + @@ -16495,7 +16521,7 @@ of endpoints (a start point and an endpoint). positive regulation process up-regulation is a process that increases the frequency, rate or extent of one or more processes in relation to a reference state. - + @@ -16504,7 +16530,7 @@ of endpoints (a start point and an endpoint). negative regulation process down-regulation is a process that decreases the frequency, rate or extent of one or more processes in relation to a reference state. - + @@ -16512,40 +16538,40 @@ of endpoints (a start point and an endpoint). medical data medical data is data of interest to medicine. - + disease - + disease is the outward manifestation of one or more disorders. - + - + - + - + - + - + - + - - + + - + @@ -16555,40 +16581,40 @@ of endpoints (a start point and an endpoint). transcription - - + + transcription is the process of creating a complementary RNA copy of a sequence of DNA. - + - + - + - + - + - + - + - + - - + + - + @@ -16598,19 +16624,19 @@ of endpoints (a start point and an endpoint). translation - - + + translation is the process of producing a polypeptide from a ribonucleic acid by a ribosome. - + - + - + @@ -16621,7 +16647,7 @@ of endpoints (a start point and an endpoint). molecular modification Molecular modification is chemical alteration of a known and previously characterized lead compound for the purpose of enhancing its usefulness as a drug. This could mean enhancing its specificity for a particular body target site, increasing its potency, improving its rate and extent of absorption, modifying to advantage its time course in the body, reducing its toxicity, changing its physical or chemical properties (like solubility) to provide desired features. - + @@ -16629,7 +16655,7 @@ of endpoints (a start point and an endpoint). metabolism Metabolism is the set of chemical processes that occur within a living organism in order to maintain life. - + @@ -16638,7 +16664,7 @@ of endpoints (a start point and an endpoint). Anabolism is the set of metabolic processes that take apart larger chemical entities units into smaller chemical entities. - + @@ -16646,19 +16672,19 @@ of endpoints (a start point and an endpoint). anabolism Anabolism is the set of metabolic processes that construct larger chemical entities units from smaller chemical entities. - + carbohydrate residue - + A carbohydrate residue is a part of a molecule that was derived from a monosaccharide molecule. - + - + @@ -16668,22 +16694,22 @@ of endpoints (a start point and an endpoint). nucleic acid part - - + + A nucleic acid part is a component of a nucleic acid. - + - + - - + + - + - - + + @@ -16692,7 +16718,7 @@ of endpoints (a start point and an endpoint). A deoxyribonucleotide residue is a part of a molecule that derives from a deoxyribonucleotide. - + @@ -16700,19 +16726,19 @@ of endpoints (a start point and an endpoint). ribonucleotide residue A ribonucleotide residue is a part of a molecule that derives from a ribonucleotide. - + pharmaceutical component - + A pharmaceutical component is a part of a pharmaceutical preparation. - + - + @@ -16723,68 +16749,68 @@ of endpoints (a start point and an endpoint). to covalently modify to covalently modify is to materially change a molecule by adding or removing covalent bonds between atoms. - + covalently connected entity - - + + A covalently connected molecular entity is the mereological sum of a collection of covalently bonded atoms. - + - - - - - - - + - + - + - + - + - + - - + + - + + + + + + + chemical complex - + A chemical complex is a chemical entity composed of a weakly connected ions or molecules. - + - + - + - + @@ -16793,92 +16819,92 @@ of endpoints (a start point and an endpoint). enzyme - + - + An enzyme is a protein or protein complex that realizes its disposition to covalently modify some molecule during a chemical reaction. - + - + - + - - - + + + - + - + - + - + - + - - + + - + - + - + - + - + - + - - - + + + - + - - + + - + - + - + - + - + - + @@ -16888,40 +16914,40 @@ of endpoints (a start point and an endpoint). catalyst A catalyst is a molecule that has the capability to reduce the activation energy of a reaction and hence increase the overall rate of reaction. - + chemical reaction - + A chemical reaction is a process that leads to the transformation of one set of chemical substances to another. - + - + - + - - - + + + - + - - + + - + @@ -16931,12 +16957,12 @@ of endpoints (a start point and an endpoint). organic polymer - + An organic polymer is an organic molecule composed of connected set of monomeric units. - + - + @@ -16947,7 +16973,7 @@ of endpoints (a start point and an endpoint). to modify conformation of to modify conformation of is to affect the spatial arrangement of an entity. - + @@ -16955,7 +16981,7 @@ of endpoints (a start point and an endpoint). to cleave to cleave is to split or sever an object along a natural line or grain. - + @@ -16963,7 +16989,7 @@ of endpoints (a start point and an endpoint). to combine to combine is the capability to modify a set of objects in a way that the object is merged with another object to form a new object or substance. - + @@ -16971,7 +16997,7 @@ of endpoints (a start point and an endpoint). to breathe to breathe is the capability to inhale and exhale air into the body during respiration. - + @@ -16979,7 +17005,7 @@ of endpoints (a start point and an endpoint). to conformationally activate to conformationally activate is to modify the conformation of an entity in such a way that it becomes activated or functional. - + @@ -16987,7 +17013,7 @@ of endpoints (a start point and an endpoint). to conformationally inhibit to conformationally inhibit is to modify the conformation of an entity in such a way that it functionally is reduced or inhibited. - + @@ -16995,7 +17021,7 @@ of endpoints (a start point and an endpoint). to oxidize to oxidize is the capability to remove an electron or an increase in oxidation state of a chemical entity. - + @@ -17003,7 +17029,7 @@ of endpoints (a start point and an endpoint). to reduce to reduce is the capability to add an electron or an decrease in oxidation state of a chemical entity. - + @@ -17011,45 +17037,45 @@ of endpoints (a start point and an endpoint). to modify oxidation state of to modify the oxidation state of is to change the number of electrons of a molecule, atom or ion. - + substrate - + A substrate is a molecule that is consumed in the course of a biochemical reaction. - + - + - + - + - + - - - + + + - + - - + + - + @@ -17058,37 +17084,37 @@ of endpoints (a start point and an endpoint). product - - + + - + - + - + - + - - - + + + - + - - + + - + @@ -17099,7 +17125,7 @@ of endpoints (a start point and an endpoint). to be modified to be modified is the capability to be actively interacted with in such a way that it leads to a physical reconfiguration. - + @@ -17107,7 +17133,7 @@ of endpoints (a start point and an endpoint). to be cleaved to be cleaved is the capability to be modified in a way that splits one part of the object from the other. - + @@ -17115,7 +17141,7 @@ of endpoints (a start point and an endpoint). to be covalently modified to be covalently modified is the capability of a chemical entity to have bonds added or removed - + @@ -17123,7 +17149,7 @@ of endpoints (a start point and an endpoint). to be combined to be combined is the capability to be modified in a way that the object is merged with another object to form a new object or substance. - + @@ -17131,7 +17157,7 @@ of endpoints (a start point and an endpoint). to be transported to be transported is the disposition to undergo motion. - + @@ -17139,7 +17165,7 @@ of endpoints (a start point and an endpoint). to be electronically modified to be electronically modified is the capability of a chemical entity to have electrons added or removed. - + @@ -17147,7 +17173,7 @@ of endpoints (a start point and an endpoint). to gain an electron to gain an electron is the capability of a chemical entity to receive an electron. - + @@ -17155,7 +17181,7 @@ of endpoints (a start point and an endpoint). to lose an electron to lose an electron is the capability of a chemical entity to lose an electron. - + @@ -17163,7 +17189,7 @@ of endpoints (a start point and an endpoint). to be activated to be activated is the capability to be modified in such a way that the conformational change leads to an increase in another capability. - + @@ -17171,7 +17197,7 @@ of endpoints (a start point and an endpoint). to be inhibited to be inhibited is the capability to be modified in such a way that the conformational change leads to an decrease in another capability. - + @@ -17179,20 +17205,20 @@ of endpoints (a start point and an endpoint). to be conformationally changed to be conformationally changed is the capability to be modified in such a way that the object's conformation is changed. - + multicellular organism - + A multi-cellular organism is an organism that consists of more than one cell. - + - + @@ -17204,17 +17230,17 @@ of endpoints (a start point and an endpoint). unicellular organism - + A unicellular organism is a organism that is composed of a single cell. - + - + - + - + @@ -17223,24 +17249,24 @@ of endpoints (a start point and an endpoint). cellular organism - + A cellular organism is an organism that contains one or more cells. - + - + - + - + - + - + @@ -17250,7 +17276,7 @@ of endpoints (a start point and an endpoint). non-cellular organism A non-cellular organism is an organism that does not contain a cell. - + @@ -17258,7 +17284,7 @@ of endpoints (a start point and an endpoint). virus A virus is a non-cellular organism that can replicate only inside the living cells of an organism. - + @@ -17266,34 +17292,34 @@ of endpoints (a start point and an endpoint). drug regulatory authority A drug regulatory authority is a regulatory authority which acts to control what substances may be used to treat individuals. - + specialized material entity - + A specialized material entity is a material entity that is defined by having some quality, role or capability. - + - + - + - + - + - - + + - + @@ -17304,7 +17330,7 @@ of endpoints (a start point and an endpoint). reagent A reagent is a substance that is added to a system in order to bring about a chemical reaction, or added to see if a reaction occurs. - + @@ -17312,7 +17338,7 @@ of endpoints (a start point and an endpoint). specimen A specimen is a portion of material for use in testing, examination, or study. - + @@ -17320,7 +17346,7 @@ of endpoints (a start point and an endpoint). pathogen A pathogen or infectious agent is a microorganism that causes disease in its host. - + @@ -17328,7 +17354,7 @@ of endpoints (a start point and an endpoint). host A host is an organism that harbors a parasite, or a mutual or commensal symbiont, typically providing nourishment and shelter. - + @@ -17336,7 +17362,7 @@ of endpoints (a start point and an endpoint). buffer A buffer is a dissolved chemical substance that resists change in pH upon addition of small amounts of acid or base. - + @@ -17344,7 +17370,7 @@ of endpoints (a start point and an endpoint). solvent A solvent is a substance that can dissolve other substances (solutes). - + @@ -17352,7 +17378,7 @@ of endpoints (a start point and an endpoint). solute A solute is a substance that becomes dissolved in a solvent. - + @@ -17360,7 +17386,7 @@ of endpoints (a start point and an endpoint). antigen An antigen is a chemical entity that can be bound by a major histocompatibility complex (MHC) and presented to a T-cell receptor. - + @@ -17368,32 +17394,32 @@ of endpoints (a start point and an endpoint). receptor A receptor molecule is a molecule that has the capability to bind to a signal and propogate a response to that signal. - + target - - + + - + - + - + - + - - + + - + @@ -17405,7 +17431,7 @@ of endpoints (a start point and an endpoint). A centrifugation pellet is a solid substance that forms as a result of compaction by a centrifuge. - + @@ -17413,7 +17439,7 @@ of endpoints (a start point and an endpoint). supernatant A supernatent is a liquid substance that remains after centrifugation. - + @@ -17421,7 +17447,7 @@ of endpoints (a start point and an endpoint). centrifugation substance A centrifugation substance is a substance that is the target or product of centrifugation. - + @@ -17429,7 +17455,7 @@ of endpoints (a start point and an endpoint). liquid solution component A liquid solution component is a part of a liquid solution. - + @@ -17437,7 +17463,7 @@ of endpoints (a start point and an endpoint). evaluation role An evaluation role is a processual role held by an entity during some evaluation. - + @@ -17445,7 +17471,7 @@ of endpoints (a start point and an endpoint). placebo A placebo is a medically ineffectual treatment for a medical condition intended to deceive the recipient. - + @@ -17453,7 +17479,7 @@ of endpoints (a start point and an endpoint). test role A test role is the role of an individual that is a participant in the study and is the target of the intervention. - + @@ -17461,54 +17487,54 @@ of endpoints (a start point and an endpoint). control role A control role is the role of an individual that is part of a study, but is not subject to the intervention that is to be tested. - + ligand - + A ligand is a molecule that is part of a complex by weakly interacting with another molecule. - + - + - + - + - + - - + + - + - + - - - + + + - + - - + + - + @@ -17519,7 +17545,7 @@ of endpoints (a start point and an endpoint). low barrier hydrogen bond A low barrier hydrogen bond is a shorter, stronger hydrogen bond that is formed between both heteroatoms. - + @@ -17527,7 +17553,7 @@ of endpoints (a start point and an endpoint). activator A molecular activator is a molecular regulator that realizes its disposition to conformationally change a target molecule and increase its functionality. - + @@ -17535,19 +17561,19 @@ of endpoints (a start point and an endpoint). inhibitor A molecular inhibitor is a molecular regulator that realizes its disposition to conformationally change a target molecule and decrease its functionality. - + molecular regulator - + A molecular regulator is a molecule that regulates the function of another chemical entity. - + - + @@ -17558,7 +17584,7 @@ of endpoints (a start point and an endpoint). signal transducer A signal transducer is a molecule that responds to and amplifies a signal in a signalling system. - + @@ -17566,7 +17592,7 @@ of endpoints (a start point and an endpoint). signal A signal is an object that initiates a sequence of events. - + @@ -17574,7 +17600,7 @@ of endpoints (a start point and an endpoint). messenger A mesenger is a molecule involved in either signal detection or signal propagation from receptors on the cell surface to target molecules inside the cell, in the cytoplasm or nucleus. - + @@ -17582,51 +17608,51 @@ of endpoints (a start point and an endpoint). second messenger A second messenger is a molecule that relay signals from receptors on the cell surface to target molecules inside the cell, in the cytoplasm or nucleus. - + submolecule - - + + A submolecule is a mereological sum of covalently bonded atoms. - + - + - - + + - + - - + + charge quality - + charge quality is the quality pertaining to electric charge. - + - + - + - + - + - + @@ -17635,12 +17661,12 @@ of endpoints (a start point and an endpoint). intron - + An intron is a region of a gene that is removed from the final protein open reading frame. - + - + @@ -17650,12 +17676,12 @@ of endpoints (a start point and an endpoint). gene component - + A gene component is a component of a gene. - + - + @@ -17666,7 +17692,7 @@ of endpoints (a start point and an endpoint). exon An exon is a nucleotide sequence encoded by a gene that remains present within the final mature RNA product of that gene after introns have been removed by RNA splicing. - + @@ -17674,7 +17700,7 @@ of endpoints (a start point and an endpoint). gene promoter A gene promoter is a region of DNA that initiates transcription of a particular gene. - + @@ -17683,19 +17709,19 @@ of endpoints (a start point and an endpoint). A start codon is the first codon of a messenger RNA (mRNA) transcript translated by a ribosome. The start codon is almost always preceded by an untranslated region 5' UTR. - + stop codon - + A stop codon (or termination codon) is a nucleotide triplet within messenger RNA that signals a termination of translation. - + - + @@ -17705,33 +17731,33 @@ of endpoints (a start point and an endpoint). RNA transcript - + An RNA transcript is an RNA molecule that is produced from transcription of a nucleic acid template. - + - + - + - + - + - + - + - - + + - + @@ -17742,7 +17768,7 @@ of endpoints (a start point and an endpoint). splice site A splice site is a region required for the excision of an intron and connection to another exon. - + @@ -17750,7 +17776,7 @@ of endpoints (a start point and an endpoint). molecular pocket A molecular pocket is a site on a molecule that appears as a depression into the structure. - + @@ -17758,7 +17784,7 @@ of endpoints (a start point and an endpoint). acid An acid is a molecular entity in solution capable of donating a hydron (Bronsted acid) or capable of forming a covalent bond with an electron pair (Lewis acid). - + @@ -17766,33 +17792,33 @@ of endpoints (a start point and an endpoint). base A base is a molecular entity dissolved in a solvent that is capable of accepting a proton (Bronsted base) or forming a covalent bond with a hydron (Lewis base) . - + isomer - + An isomer is a molecule that is compositionally identical to another molecule as a result of a different atomic connectivity. - + - + - + - + - + - - + + - + @@ -17801,43 +17827,43 @@ of endpoints (a start point and an endpoint). ion - + An ion is an atom or molecule in which the total number of electrons is not equal to the total number of protons, giving it a net positive or negative electrical charge. - + - + - + - - - + + + - + - + - + - + - + - - + + - + @@ -17846,27 +17872,27 @@ of endpoints (a start point and an endpoint). cation - + An anion is an atom or molecule with a net positive electrical charge. - + - + - + - + - + - - + + - + @@ -17875,27 +17901,27 @@ of endpoints (a start point and an endpoint). anion - + An anion is an atom or molecule with a net negative electrical charge. - + - + - + - + - + - - + + - + @@ -17905,13 +17931,13 @@ of endpoints (a start point and an endpoint). polar solvent - + A polar solvent is a solvent that exhibits a polar quality. - + - + @@ -17921,12 +17947,12 @@ of endpoints (a start point and an endpoint). nonpolar solvent - + A non-polar solvent is a solvent that exhibits a non-polar quality. - + - + @@ -17938,7 +17964,7 @@ of endpoints (a start point and an endpoint). A positive charge is a charge where the value is positive. - + @@ -17948,7 +17974,7 @@ of endpoints (a start point and an endpoint). A heterogeneous substance is a chemical substance that is composed of more than one different kind of component. - + @@ -17956,7 +17982,7 @@ of endpoints (a start point and an endpoint). homogeneous substance A homogeneous substance is a substance that is composed of a uniform type of entity. - + @@ -17964,7 +17990,7 @@ of endpoints (a start point and an endpoint). negative charge A negative charge is a charge where the value is negative. - + @@ -17972,7 +17998,7 @@ of endpoints (a start point and an endpoint). antibody An antibody (also known as immunoglobulins, abbreviated Ig) are gamma globulin proteins that are used by the immune system to identify and neutralize foreign objects. They are typically made of two large heavy chains and two small light chains. - + @@ -17980,7 +18006,7 @@ of endpoints (a start point and an endpoint). alpha helix An alpha helix is structural region of a protein that is characterized by 3.6 residues per turn, a translation of 1.5 angstroms along the helical axis in which backbone N-H groups form a hydrogen bond to the backbone carboxyl group of the amino acid four residues prior. - + @@ -17989,7 +18015,7 @@ of endpoints (a start point and an endpoint). A beta strand is structural region of a protein that is characterized by a roughly planar sequence of amino acid residues forming hydrogen bonds between the N-O and the C=O of another part of the peptide and having their side chains perpendicular to the planar axis. - + @@ -17997,7 +18023,7 @@ and having their side chains perpendicular to the planar axis. protein part A protein part is any submolecule of a protein. - + @@ -18005,19 +18031,19 @@ and having their side chains perpendicular to the planar axis. ionic interaction An ionic interaction is a weak submolecular interaction between a charged submolecules. - + protein complex - + A protein complex is a molecular complex composed of at least two polypeptide chains. - + - + @@ -18029,7 +18055,7 @@ and having their side chains perpendicular to the planar axis. single bond A single bond is a covalent bond between a pair of atoms in which one pair of electrons are shared. - + @@ -18037,7 +18063,7 @@ and having their side chains perpendicular to the planar axis. double bond A double bond is a covalent bond between a pair of atoms in which two pairs of electrons are shared. - + @@ -18045,7 +18071,7 @@ and having their side chains perpendicular to the planar axis. triple bond A triple bond is a covalent bond between a pair of atoms in which three pairs of electrons are shared. - + @@ -18053,7 +18079,7 @@ and having their side chains perpendicular to the planar axis. aromatic bond An aromatic bond is an interaction between a set of atoms across which pairs of electrons are shared. - + @@ -18061,7 +18087,7 @@ and having their side chains perpendicular to the planar axis. disulfide bond A disulfide bond is a bond between two sulfur atoms. - + @@ -18069,7 +18095,7 @@ and having their side chains perpendicular to the planar axis. dipole-dipole interaction A dipole-dipole interaction is a weak submolecular interaction between strongly electronegative atoms. - + @@ -18077,7 +18103,7 @@ and having their side chains perpendicular to the planar axis. van der Waals interaction van der Waals' interaction is an a weak submolecular interaction between an instantaneous dipole and induced dipole. - + @@ -18085,40 +18111,40 @@ and having their side chains perpendicular to the planar axis. base stack A base stack is a stabilizing interaction of DNA and RNA between spatially adjacent nucleotides and possibly involving London dispersion, hydrophobic and electrostatic forces. - + molecular complex - + A molecular complex is a chemical complex composed of weakly interacting molecular entities, and excludes bulk solvent. - + - + - + - - - + + + - + - - + + - + @@ -18130,19 +18156,19 @@ and having their side chains perpendicular to the planar axis. acid-base reaction An acid-base reaction is a chemical reaction between an acid and a base. - + catalyzed reaction - + A catalyzed reaction is a chemical reaction that is facilitated by a catalyst. - + - + @@ -18152,75 +18178,75 @@ and having their side chains perpendicular to the planar axis. redox reaction - + A redox reaction is a chemical reaction in which there is a net movement of electrons from one reactant to another. - + - + - + - - - + + + - + - + - + - + - + - + - - + + - + - - + + - + - + - + - + - + - + - - + + - + @@ -18231,7 +18257,7 @@ and having their side chains perpendicular to the planar axis. inorganic reaction An inorganic reaction is a chemical reaction that involves the transformation of inorganic molecules. - + @@ -18239,7 +18265,7 @@ and having their side chains perpendicular to the planar axis. decomposition reaction A decomposition reaction is an inorganic reaction in which molecule is fragmented into submolecules or atoms. - + @@ -18247,7 +18273,7 @@ and having their side chains perpendicular to the planar axis. displacement reaction A displacement reaction is an inorganic reaction in which a elementary substance displaces and sets free a constituent atom from a molecule. - + @@ -18255,7 +18281,7 @@ and having their side chains perpendicular to the planar axis. double displacement reaction A double displacement reaction is a displacement reaction in which two molecules swap ions, effectively displacing each other to form two new molecules. - + @@ -18263,7 +18289,7 @@ and having their side chains perpendicular to the planar axis. single displacement reaction A single displacement reaction where one atom is transferred out of one molecule and into another. - + @@ -18271,7 +18297,7 @@ and having their side chains perpendicular to the planar axis. synthesis reaction A synthesis reaction is an inorganic reaction in which two or more molecules are chemically bonded together to produce a single product. - + @@ -18279,7 +18305,7 @@ and having their side chains perpendicular to the planar axis. organic reaction An organic reaction is a chemical reaction involving at least one organic molecule. - + @@ -18287,7 +18313,7 @@ and having their side chains perpendicular to the planar axis. isomerization reaction An isomerization reaction is a chemical reaction in which a molecule is converted into its isomer. - + @@ -18297,7 +18323,7 @@ and having their side chains perpendicular to the planar axis. An addition reaction is an organic reaction where two or more molecules combine to form a larger one. Addition reactions are limited to chemical compounds that have multiply-bonded atoms: * Molecules with carbon-carbon double bonds or triple bonds * Molecules with carbon - hetero double bonds like C=O or C=N - + @@ -18305,7 +18331,7 @@ and having their side chains perpendicular to the planar axis. polar addition reaction A polar addition reaction is an addition reaction involving polar residues. - + @@ -18313,7 +18339,7 @@ and having their side chains perpendicular to the planar axis. non-polar addition reaction A non-polar addition reaction is an addition reaction involving non-polar residues. - + @@ -18321,7 +18347,7 @@ and having their side chains perpendicular to the planar axis. free radical addition A free radical addition is a non-polar addition reaction involving free radicals. - + @@ -18329,7 +18355,7 @@ and having their side chains perpendicular to the planar axis. nucleophilic addition reaction A nucleophilic addition reaction is an addition reaction where a pi bond is removed by the creation of two new covalent bonds by the addition from a nucleophile. - + @@ -18337,7 +18363,7 @@ and having their side chains perpendicular to the planar axis. electrophilic addition reaction An electrophilic addition reaction is a polar addition reaction where a pi bond is removed by the creation of two new covalent bonds. - + @@ -18345,50 +18371,50 @@ and having their side chains perpendicular to the planar axis. biochemical pathway A biochemical pathway specifies a series of biochemical modifications and transformations towards achieving some biological outcome. - + chemical reaction pathway - - - + + + A chemical reaction pathway specifies a series of chemical reactions towards producing some chemical product. - + - + - - - - - - - + - + - + + + + + + + chemical synthesis pathway A chemical synthesis pathway is a pathway involved in the assembly of a chemical. - + @@ -18396,7 +18422,7 @@ and having their side chains perpendicular to the planar axis. chemical degradation pathway A chemical degradation pathway is a pathway involved in the disassembly of a chemical. - + @@ -18404,7 +18430,7 @@ and having their side chains perpendicular to the planar axis. 3d structure model A 3D structure model is a representation of the spatial arrangement of one or more chemical entities. - + @@ -18412,7 +18438,7 @@ and having their side chains perpendicular to the planar axis. sequence profile A sequence profile is provides the preference for a character at each position of an abstracted sequence. - + @@ -18421,7 +18447,7 @@ and having their side chains perpendicular to the planar axis. A metabolic pathway is a series of biochemical reactions that begins with one or more substrates and ends with one or more products. - + @@ -18429,7 +18455,7 @@ and having their side chains perpendicular to the planar axis. regulatory pathway A regulatory pathway is a series of biochemical reactions that lead to the increase or decrease of activity of participating molecular components. - + @@ -18437,19 +18463,19 @@ and having their side chains perpendicular to the planar axis. medical history A medical history is a record of the events of a recipient of medical care. - + binary compound - + A binary compound is a mereological maximum sum of two kinds of weakly connected entities. - + - + @@ -18461,7 +18487,7 @@ and having their side chains perpendicular to the planar axis. stereoisomer A stereoisomer is an isomer in which the atomic connectivity is the same, but differs in its spatial arrangement of atoms. - + @@ -18469,7 +18495,7 @@ and having their side chains perpendicular to the planar axis. diastereomer A diastereomer is a stereoisomer that is not a mirror image of its isomer. - + @@ -18477,7 +18503,7 @@ and having their side chains perpendicular to the planar axis. enantiomer An enantiomer is a stereoisomer that is a mirror image of its isomer. - + @@ -18485,7 +18511,7 @@ and having their side chains perpendicular to the planar axis. optical isomer An optical isomer is a stereoisomer that rotates the plane of polarization of a beam of plane polarized light. - + @@ -18493,35 +18519,35 @@ and having their side chains perpendicular to the planar axis. structural isomer A structural isomer is an isomer in which the atoms are joined together in different ways. - + ring - + - + A ring is a submolecule with a circular topology. - + - + - + - + - + - + - + @@ -18533,7 +18559,7 @@ and having their side chains perpendicular to the planar axis. aromatic ring An aromatic ring is a ring in which the electrons are delocalized across all atoms in the ring. - + @@ -18542,7 +18568,7 @@ and having their side chains perpendicular to the planar axis. A heterocyclic ring is a ring containing a hetero atom. - + @@ -18550,30 +18576,30 @@ and having their side chains perpendicular to the planar axis. homocyclic ring A homocyclic ring is a ring where the atoms are of a single type. - + ionic compound - - + + An ionic compound is a mereological maximal sum of weakly connected paired positive and negative ions. - + - + - + 1 - + - + 1 @@ -18582,19 +18608,19 @@ and having their side chains perpendicular to the planar axis. allotrope An allotrope is a structural variant of a chemical element. - + carbon allotrope - + A carbon allotrope is a chemical substance composed of carbon. - + - + @@ -18605,7 +18631,7 @@ and having their side chains perpendicular to the planar axis. diamond diamond is a carbon allotrope in which each carbon atom in diamond is covalently bonded to four other carbons in a tetrahedron. These tetrahedrons together form a 3-dimensional network of puckered six-membered rings of atoms. - + @@ -18613,7 +18639,7 @@ and having their side chains perpendicular to the planar axis. graphite graphite is an allotrope of carbon which is a conductor, and is the most stable form of solid carbon. - + @@ -18621,7 +18647,7 @@ and having their side chains perpendicular to the planar axis. fullerene fullerene is a carbon allotrope which take the form of a hollow sphere, ellipsoid, or tube. - + @@ -18629,7 +18655,7 @@ and having their side chains perpendicular to the planar axis. aggregated carbon nanorods aggregate of carbon nanorods is an allotrope of carbon considered to be the least compressible material known, as measured by its isothermal bulk modulus; aggregated diamond nanorods have a modulus of 491 gigapascals (GPa), while a conventional diamond has a modulus of 442 GPa. ADNRs are also 0.3% denser than regular diamond. - + @@ -18637,7 +18663,7 @@ and having their side chains perpendicular to the planar axis. amorphous carbon amorphous carbon is an allotrope of carbon that does not have any crystalline structure. As with all glassy materials, some short-range order can be observed, but there is no long-range pattern of atomic positions. - + @@ -18645,7 +18671,7 @@ and having their side chains perpendicular to the planar axis. carbon nanofoam carbon nanofoam is an allotrope of carbon that consists of a low-density cluster-assembly of carbon atoms strung together in a loose three-dimensional web. Each cluster is about 6 nanometers wide and consists of about 4000 carbon atoms linked in graphite-like sheets that are given negative curvature by the inclusion of heptagons among the regular hexagonal pattern. - + @@ -18653,7 +18679,7 @@ and having their side chains perpendicular to the planar axis. chaoite chaoite is an allotrope of carbon that is slightly harder than graphite with a reflection colour of grey to white. - + @@ -18661,7 +18687,7 @@ and having their side chains perpendicular to the planar axis. glassy carbon glassy carbon is an allotrope of carbon which is widely used as an electrode material in electrochemistry, as well as for high temperature crucibles and as a component of some prosthetic devices. - + @@ -18669,7 +18695,7 @@ and having their side chains perpendicular to the planar axis. ionsdaleite ionsdaleite is a hexagonal allotrope of the carbon allotrope diamond. - + @@ -18677,7 +18703,7 @@ and having their side chains perpendicular to the planar axis. boron atom CHEBI:27560 - + @@ -18685,7 +18711,7 @@ and having their side chains perpendicular to the planar axis. carbon atom CHEBI:27594 - + @@ -18693,7 +18719,7 @@ and having their side chains perpendicular to the planar axis. hydrogen atom CHEBI:49637 - + @@ -18701,7 +18727,7 @@ and having their side chains perpendicular to the planar axis. helium atom CHEBI:30217 - + @@ -18709,7 +18735,7 @@ and having their side chains perpendicular to the planar axis. lithium atom CHEBI:30145 - + @@ -18717,7 +18743,7 @@ and having their side chains perpendicular to the planar axis. beryllium atom CHEBI:30501 - + @@ -18725,7 +18751,7 @@ and having their side chains perpendicular to the planar axis. nitrogen atom CHEBI:25555 - + @@ -18733,7 +18759,7 @@ and having their side chains perpendicular to the planar axis. oxygen atom CHEBI:25805 - + @@ -18741,7 +18767,7 @@ and having their side chains perpendicular to the planar axis. fluorine atom CHEBI:24061 - + @@ -18749,7 +18775,7 @@ and having their side chains perpendicular to the planar axis. neon atom CHEBI:33310 - + @@ -18757,7 +18783,7 @@ and having their side chains perpendicular to the planar axis. sodium atom CHEBI:26708 - + @@ -18765,7 +18791,7 @@ and having their side chains perpendicular to the planar axis. magnesium atom CHEBI:25107 - + @@ -18773,7 +18799,7 @@ and having their side chains perpendicular to the planar axis. aluminium atom CHEBI:28984 - + @@ -18781,7 +18807,7 @@ and having their side chains perpendicular to the planar axis. silicon atom CHEBI:27573 - + @@ -18789,7 +18815,7 @@ and having their side chains perpendicular to the planar axis. phosphorus atom CHEBI:28659 - + @@ -18797,7 +18823,7 @@ and having their side chains perpendicular to the planar axis. sulfur atom CHEBI:26833 - + @@ -18805,7 +18831,7 @@ and having their side chains perpendicular to the planar axis. chlorine atom CHEBI:23116 - + @@ -18813,7 +18839,7 @@ and having their side chains perpendicular to the planar axis. argon atom CHEBI:49475 - + @@ -18821,7 +18847,7 @@ and having their side chains perpendicular to the planar axis. potassium atom CHEBI:26216 - + @@ -18829,7 +18855,7 @@ and having their side chains perpendicular to the planar axis. calcium atom CHEBI:22984 - + @@ -18837,7 +18863,7 @@ and having their side chains perpendicular to the planar axis. scandium atom CHEBI:33330 - + @@ -18845,7 +18871,7 @@ and having their side chains perpendicular to the planar axis. titanium atom CHEBI:33341 - + @@ -18853,7 +18879,7 @@ and having their side chains perpendicular to the planar axis. vanadium atom CHEBI:27698 - + @@ -18861,7 +18887,7 @@ and having their side chains perpendicular to the planar axis. chromium atom CHEBI:28073 - + @@ -18869,7 +18895,7 @@ and having their side chains perpendicular to the planar axis. manganese atom CHEBI:18291 - + @@ -18877,7 +18903,7 @@ and having their side chains perpendicular to the planar axis. iron atom CHEBI:18248 - + @@ -18885,7 +18911,7 @@ and having their side chains perpendicular to the planar axis. cobalt atom CHEBI:27638 - + @@ -18893,7 +18919,7 @@ and having their side chains perpendicular to the planar axis. nickel atom CHEBI:28112 - + @@ -18901,7 +18927,7 @@ and having their side chains perpendicular to the planar axis. copper atom CHEBI:28694 - + @@ -18909,7 +18935,7 @@ and having their side chains perpendicular to the planar axis. zinc atom CHEBI:27363 - + @@ -18917,7 +18943,7 @@ and having their side chains perpendicular to the planar axis. gallium atom CHEBI:49631 - + @@ -18925,7 +18951,7 @@ and having their side chains perpendicular to the planar axis. germanium atom CHEBI:30441 - + @@ -18933,7 +18959,7 @@ and having their side chains perpendicular to the planar axis. arsenic atom CHEBI:27563 - + @@ -18941,7 +18967,7 @@ and having their side chains perpendicular to the planar axis. selenium atom CHEBI:27568 - + @@ -18949,7 +18975,7 @@ and having their side chains perpendicular to the planar axis. bromine atom CHEBI:22927 - + @@ -18957,7 +18983,7 @@ and having their side chains perpendicular to the planar axis. krypton atom CHEBI:49696 - + @@ -18965,7 +18991,7 @@ and having their side chains perpendicular to the planar axis. rubidium atom CHEBI:33322 - + @@ -18973,7 +18999,7 @@ and having their side chains perpendicular to the planar axis. strontium atom CHEBI:33324 - + @@ -18981,7 +19007,7 @@ and having their side chains perpendicular to the planar axis. yttrium atom CHEBI:33331 - + @@ -18989,7 +19015,7 @@ and having their side chains perpendicular to the planar axis. zirconium atom CHEBI:33342 - + @@ -18997,7 +19023,7 @@ and having their side chains perpendicular to the planar axis. niobium atom CHEBI:33344 - + @@ -19005,7 +19031,7 @@ and having their side chains perpendicular to the planar axis. molybdemum atom CHEBI:28685 - + @@ -19013,7 +19039,7 @@ and having their side chains perpendicular to the planar axis. technetium atom CHEBI:33353 - + @@ -19021,7 +19047,7 @@ and having their side chains perpendicular to the planar axis. ruthenium atom CHEBI:30682 - + @@ -19029,7 +19055,7 @@ and having their side chains perpendicular to the planar axis. rhodium atom CHEBI:33359 - + @@ -19037,7 +19063,7 @@ and having their side chains perpendicular to the planar axis. palladium atom CHEBI:33363 - + @@ -19045,7 +19071,7 @@ and having their side chains perpendicular to the planar axis. silver atom CHEBI:30512 - + @@ -19053,7 +19079,7 @@ and having their side chains perpendicular to the planar axis. cadmium atom CHEBI:22977 - + @@ -19061,7 +19087,7 @@ and having their side chains perpendicular to the planar axis. indium atom CHEBI:30430 - + @@ -19069,7 +19095,7 @@ and having their side chains perpendicular to the planar axis. tin atom CHEBI:27007 - + @@ -19077,7 +19103,7 @@ and having their side chains perpendicular to the planar axis. antimony atom CHEBI:30513 - + @@ -19085,7 +19111,7 @@ and having their side chains perpendicular to the planar axis. tellurium atom CHEBI:30452 - + @@ -19093,7 +19119,7 @@ and having their side chains perpendicular to the planar axis. iodine atom CHEBI:24859 - + @@ -19101,7 +19127,7 @@ and having their side chains perpendicular to the planar axis. xenon atom CHEBI:49957 - + @@ -19109,7 +19135,7 @@ and having their side chains perpendicular to the planar axis. caesium atom CHEBI:30514 - + @@ -19117,7 +19143,7 @@ and having their side chains perpendicular to the planar axis. barium atom CHEBI:32594 - + @@ -19125,7 +19151,7 @@ and having their side chains perpendicular to the planar axis. lanthanum atom CHEBI:33336 - + @@ -19133,7 +19159,7 @@ and having their side chains perpendicular to the planar axis. hafnium atom CHEBI:33343 - + @@ -19141,7 +19167,7 @@ and having their side chains perpendicular to the planar axis. tantalum atom CHEBI:33348 - + @@ -19149,7 +19175,7 @@ and having their side chains perpendicular to the planar axis. tungsten atom CHEBI:27998 - + @@ -19157,7 +19183,7 @@ and having their side chains perpendicular to the planar axis. rhenium atom CHEBI:49882 - + @@ -19165,7 +19191,7 @@ and having their side chains perpendicular to the planar axis. osmium atom CHEBI:30687 - + @@ -19173,7 +19199,7 @@ and having their side chains perpendicular to the planar axis. iridium atom CHEBI:49666 - + @@ -19181,7 +19207,7 @@ and having their side chains perpendicular to the planar axis. platinum atom CHEBI:33364 - + @@ -19189,7 +19215,7 @@ and having their side chains perpendicular to the planar axis. gold atom CHEBI:29287 - + @@ -19197,7 +19223,7 @@ and having their side chains perpendicular to the planar axis. mercury atom CHEBI:25195 - + @@ -19205,7 +19231,7 @@ and having their side chains perpendicular to the planar axis. thallium atom CHEBI:49920 - + @@ -19213,7 +19239,7 @@ and having their side chains perpendicular to the planar axis. lead atom CHEBI:25016 - + @@ -19221,7 +19247,7 @@ and having their side chains perpendicular to the planar axis. bismuth atom CHEBI:33301 - + @@ -19229,7 +19255,7 @@ and having their side chains perpendicular to the planar axis. polonium atom CHEBI:33313 - + @@ -19237,7 +19263,7 @@ and having their side chains perpendicular to the planar axis. astatine atom CHEBI:30415 - + @@ -19245,7 +19271,7 @@ and having their side chains perpendicular to the planar axis. radon atom CHEBI:33314 - + @@ -19253,7 +19279,7 @@ and having their side chains perpendicular to the planar axis. francium atom CHEBI:33323 - + @@ -19261,7 +19287,7 @@ and having their side chains perpendicular to the planar axis. radium atom CHEBI:33325 - + @@ -19269,7 +19295,7 @@ and having their side chains perpendicular to the planar axis. actinium atom CHEBI:33337 - + @@ -19277,7 +19303,7 @@ and having their side chains perpendicular to the planar axis. rutherfordium atom CHEBI:33346 - + @@ -19285,7 +19311,7 @@ and having their side chains perpendicular to the planar axis. dubnium atom CHEBI:33349 - + @@ -19293,7 +19319,7 @@ and having their side chains perpendicular to the planar axis. seaborgium atom CHEBI:33351 - + @@ -19301,7 +19327,7 @@ and having their side chains perpendicular to the planar axis. bohrium atom CHEBI:33355 - + @@ -19309,7 +19335,7 @@ and having their side chains perpendicular to the planar axis. hassium atom CHEBI:33357 - + @@ -19317,7 +19343,7 @@ and having their side chains perpendicular to the planar axis. meitnerium atom CHEBI:33361 - + @@ -19325,7 +19351,7 @@ and having their side chains perpendicular to the planar axis. darmstadtium atom CHEBI:33367 - + @@ -19333,7 +19359,7 @@ and having their side chains perpendicular to the planar axis. roentgenium atom CHEBI:33368 - + @@ -19341,49 +19367,49 @@ and having their side chains perpendicular to the planar axis. copernicium atom CHEBI:33517 - + unutrium atom - + ununquadium atom - + ununpentium atom - + ununhexium atom - + ununseptium atom - + ununoctium atom - + @@ -19391,7 +19417,7 @@ and having their side chains perpendicular to the planar axis. cerium atom CHEBI:33369 - + @@ -19399,7 +19425,7 @@ and having their side chains perpendicular to the planar axis. praseodymium atom CHEBI:49828 - + @@ -19407,7 +19433,7 @@ and having their side chains perpendicular to the planar axis. neodymium atom CHEBI:33372 - + @@ -19415,7 +19441,7 @@ and having their side chains perpendicular to the planar axis. promethium atom CHEBI:33373 - + @@ -19423,7 +19449,7 @@ and having their side chains perpendicular to the planar axis. samarium atom CHEBI:33374 - + @@ -19431,7 +19457,7 @@ and having their side chains perpendicular to the planar axis. europium atom CHEBI:32999 - + @@ -19439,7 +19465,7 @@ and having their side chains perpendicular to the planar axis. gadolinium atom CHEBI:33375 - + @@ -19447,7 +19473,7 @@ and having their side chains perpendicular to the planar axis. terbium atom CHEBI:33376 - + @@ -19455,7 +19481,7 @@ and having their side chains perpendicular to the planar axis. dysprosium atom CHEBI:33377 - + @@ -19463,7 +19489,7 @@ and having their side chains perpendicular to the planar axis. holmium atom CHEBI:49648 - + @@ -19471,7 +19497,7 @@ and having their side chains perpendicular to the planar axis. erbium atom CHEBI:33379 - + @@ -19479,7 +19505,7 @@ and having their side chains perpendicular to the planar axis. thulium atom CHEBI:33380 - + @@ -19487,7 +19513,7 @@ and having their side chains perpendicular to the planar axis. ytterbium atom CHEBI:33381 - + @@ -19495,7 +19521,7 @@ and having their side chains perpendicular to the planar axis. lutetium atom CHEBI:33382 - + @@ -19503,7 +19529,7 @@ and having their side chains perpendicular to the planar axis. thorium atom CHEBI:33385 - + @@ -19511,7 +19537,7 @@ and having their side chains perpendicular to the planar axis. protactinium atom CHEBI:33386 - + @@ -19519,7 +19545,7 @@ and having their side chains perpendicular to the planar axis. uranium atom CHEBI:27214 - + @@ -19527,7 +19553,7 @@ and having their side chains perpendicular to the planar axis. neptunium atom CHEBI:33387 - + @@ -19535,7 +19561,7 @@ and having their side chains perpendicular to the planar axis. plutonium atom CHEBI:33388 - + @@ -19543,7 +19569,7 @@ and having their side chains perpendicular to the planar axis. americium atom CHEBI:33389 - + @@ -19551,7 +19577,7 @@ and having their side chains perpendicular to the planar axis. curium atom CHEBI:33390 - + @@ -19559,7 +19585,7 @@ and having their side chains perpendicular to the planar axis. berkelium atom CHEBI:33391 - + @@ -19567,7 +19593,7 @@ and having their side chains perpendicular to the planar axis. californium atom CHEBI:33392 - + @@ -19575,7 +19601,7 @@ and having their side chains perpendicular to the planar axis. einsteinium atom CHEBI:33393 - + @@ -19583,7 +19609,7 @@ and having their side chains perpendicular to the planar axis. fermium atom CHEBI:33394 - + @@ -19591,7 +19617,7 @@ and having their side chains perpendicular to the planar axis. mendelevium atom CHEBI:33395 - + @@ -19599,7 +19625,7 @@ and having their side chains perpendicular to the planar axis. nobelium atom CHEBI:33396 - + @@ -19607,20 +19633,20 @@ and having their side chains perpendicular to the planar axis. lawrencium atom CHEBI:33397 - + covalent bond - - A covalent bond is a strong submolecular interaction between atoms. + CHEMINF:000063 - + A covalent bond is a strong submolecular interaction between atoms. + - + @@ -19631,12 +19657,12 @@ and having their side chains perpendicular to the planar axis. biomolecular structure descriptor - + A biomolecular structure descriptor is structure description for organic compounds. - + - + @@ -19646,49 +19672,49 @@ and having their side chains perpendicular to the planar axis. molecular structure file - - - + + + A molecular structure file is a file that contains a description of molecular structure. - + - + - + - + - - + + - + - - + + molecular structure descriptor - - + + CHEMINF:000085 molecular structure descriptor is data that describes some aspect of the molecular structure (composition) and is about some chemical entity. - + - + - + @@ -19698,22 +19724,22 @@ and having their side chains perpendicular to the planar axis. chemical data - A chemical datum is a scientific data item which conforms to some specification, either for how it is calculated or for how it is measured, and is commonly used in the domain of chemistry to name and differentiate different numeric properties (both calculated and measured) which are about chemical entities. CHEMINF:000123 - + A chemical datum is a scientific data item which conforms to some specification, either for how it is calculated or for how it is measured, and is commonly used in the domain of chemistry to name and differentiate different numeric properties (both calculated and measured) which are about chemical entities. + molecule - + A molecule is the mereological maximal sum of a collection of covalently bonded atoms. CHEBI:23367 - + - + @@ -19722,24 +19748,24 @@ and having their side chains perpendicular to the planar axis. chemical substance - + A chemical substance is a chemical complex of weakly interacting molecular entities, and may include bulk solvent. CHEMINF:440533 - + - + - + - + - + - + @@ -19749,481 +19775,481 @@ and having their side chains perpendicular to the planar axis. PDB file A PDB file is a molecular structure file specified by the Protein DataBank (PDB). - + collection of 3d molecular structure models - + A collection of 3D molecular structure models is just that. - + - + - + - + - - - + + + - - - + + + - - - + + + - - - + + + - - - + + + - - - + + + - - - + + + - - - + + + - - - + + + - - - + + + - - - + + + - - - + + + - - + + - + - + - - - + + + - - - + + + - - + + - + - + - - - + + + - - - + + + - - - + + + - - - + + + - - - + + + - - - + + + - - - + + + - - - + + + - - - + + + - - + + + + + + + + + + + + - + - + - - - + + + - - - + + + - - + + - + - + - - - + + + - - - + + + - - - + + + - - - + + + - - - + + + - - - + + + - - - + + + - - + + + + + + + + + + + + - + - + - - - + + + - - - + + + - - + + - + - - - - - - + - - - + + + - - - + + + - - - + + + - - + + - + - - - - - - + - - - + + + - - - + + + - - + + - + - + - + + + + + + - + - + - + - + - + - - - - - - + - - - + + + - - - + + + - - - + + + - - + + - + - + - - - + + + - - - + + + - - + + - + - + - - - + + + - - - + + + - - - + + + - - + + - + - + - - - + + + - - - + + + - - + + - + - + - - - - - - - - - - - - - + + + - - - + + + - - - + + + - - - + + + - - + + - + - + - - - + + + - - - + + + - - + + diff --git a/ontology/sio/release/sio-subset-math.owl b/ontology/sio/release/sio-subset-math.owl index d90a2f3e..eae332e2 100644 --- a/ontology/sio/release/sio-subset-math.owl +++ b/ontology/sio/release/sio-subset-math.owl @@ -10,7 +10,7 @@ geographic position A geographic position is the coordinate of an entity against some geographic coordinate system. - + @@ -18,7 +18,7 @@ start date A start date is a time instant pertaining to the date of the beginning of a process. - + @@ -26,7 +26,7 @@ end date An end date is a time instant pertaining to date of the end of a process. - + @@ -35,7 +35,7 @@ A spatial quantity is a quantity obtained from measuring the spatial extent of an entity physical dimensional quantity - + @@ -43,7 +43,7 @@ 1D extent quantity A quantity that extends in single dimension. - + @@ -51,7 +51,7 @@ depth depth is the dimensional extent into a plane of a 3D projection of the object. - + @@ -59,7 +59,7 @@ height height is the one dimensional extent along the vertical projection of a 3D object from a base plane of reference. - + @@ -67,7 +67,7 @@ length length is the longer dimensional extent along a 2D projection of the object. - + @@ -75,7 +75,7 @@ width width is the shorter dimensional extent perpendicular to a 2D projection of the object. - + @@ -83,7 +83,7 @@ thickness thickness is the shortest dimensional extent of a 3D projection of an object. - + @@ -91,7 +91,7 @@ 2D extent quantity A quantity that extends in two dimensions. - + @@ -99,7 +99,7 @@ area area is a quantity that pertains to the extent of a two-dimensional surface or shape, or planar lamina, in the plane. - + @@ -107,7 +107,7 @@ length of perimeter A perimeter is a length of the outline that surrounds a two-dimensional shape. - + @@ -115,7 +115,7 @@ circumference circumference is the length of the outline of a circle or ellipse. it is defined as c = 2*pi*r, where r is the radius. - + @@ -123,7 +123,7 @@ 3D extent quantity A quantity that extends in three dimensions. - + @@ -131,7 +131,7 @@ volume volume is the quantity of three-dimensional space enclosed by some closed boundary. - + @@ -139,7 +139,7 @@ quantity A quantity is an informational entity that gives the magnitude of a property. - + @@ -147,7 +147,7 @@ position A measurement of a spatial location relative to a frame of reference or other objects. - + @@ -155,7 +155,7 @@ orientation orientation is an angle between the bearer and an axis, or the angle between the bearer and another object. - + @@ -163,7 +163,7 @@ measurement value A measurement value is a quantitative description that reflects the magnitude of some attribute. - + @@ -171,7 +171,7 @@ coordinate A coordinate is a measurement of position in n-dimensional space. - + @@ -180,7 +180,7 @@ A Cartesian coordinate is the signed distance of a point to some referent line. - + @@ -188,7 +188,7 @@ polar coordinate A polar coordinate is a position characterized by a distance from a fixed point and an angle from a fixed direction. - + @@ -196,15 +196,15 @@ unit of measurement A unit of measurement is a definite magnitude of a physical quantity, defined and adopted by convention and/or by law, that is used as a standard for measurement of the same physical quantity. - + mathematical entity - math+ A mathematical entity is an information content entity that are components of a mathematical system or can be defined in mathematical terms. - + math+ + @@ -212,16 +212,16 @@ algorithm An algorithm is an effective method expressed as a finite list of well-defined instructions for calculating a function. - + magazine - http://purl.org/ontology/bibo/Magazine A magazine is a periodical that typically contains essays, stories, poems, etc., by many writers, and often photographs and drawings, frequently specializing in a particular subject or area, as hobbies, news, or sports. - + http://purl.org/ontology/bibo/Magazine + @@ -229,7 +229,7 @@ workflow A workflow is an algorithm that is is a depiction of a sequence of operations to achieve one or more objectives. - + @@ -237,7 +237,7 @@ pattern A pattern is a generalized representation of some repeatable concrete or informational item. - + @@ -246,7 +246,7 @@ A sequence motif is a pattern of nucleotides in a DNA sequence or amino acids in a protein. - + @@ -254,7 +254,7 @@ class A class is a collection of sets which can be unambiguously defined by a property that all its members share. - + @@ -262,7 +262,7 @@ parameter A parameter is variable whose value changes the characteristics of a system or a function. - + @@ -270,7 +270,7 @@ list A list is any enumeration of a set of items. - + @@ -278,7 +278,7 @@ book series A book series is a collection of books that have been sequentially published. - + @@ -287,7 +287,7 @@ http://purl.org/ontology/bibo/Journal A journal is a a peer-reviewed periodical in which scholarship relating to a particular academic discipline is published. - + @@ -296,7 +296,7 @@ A periodical is a publication that appears on a regular schedule. http://purl.org/ontology/bibo/Periodical - + @@ -305,7 +305,7 @@ A newspaper is a periodical publication containing news regarding current events, informative articles, diverse features, editorials, and advertising. http://purl.org/ontology/bibo/Newspaper - + @@ -313,7 +313,7 @@ page range A page range denotes the start and end page in some document. - + @@ -321,7 +321,7 @@ page total A page total is a textual entity that is about the number of pages in some informational entity. - + @@ -329,7 +329,7 @@ implies (->) Implication is a logical operator that holds between a set T of propositions and a proposition B, when every model (or interpretation or valuation) of T is also a model of B. - + @@ -337,7 +337,7 @@ logical operator A logical operator is a unary or binary relation to construct logical expressions. - + @@ -345,7 +345,7 @@ conjunction (and) AND is a logical operator that has the value true if both of its operands are true, otherwise a value of false. - + @@ -354,7 +354,7 @@ A dimensionless quantity is a quantity that has no associated unit. - + @@ -362,7 +362,7 @@ dimensional quantity A dimensional quantity is a quantity that has an associated unit. - + @@ -370,7 +370,7 @@ mass mass is the quality of the amount of substance. - + @@ -378,7 +378,7 @@ disjunction (or) OR is a logical operator that results in true whenever one or more of its operands are true. - + @@ -386,7 +386,7 @@ negation (not) NOT is a logical operator in that has the value true if its operand is false. - + @@ -394,7 +394,7 @@ exclusive disjunction (xor) XOR, also called exclusive disjunction or (symbolized XOR, EOR, EXOR, or ⊕), is a type of logical disjunction on two operands that results in a value of true if exactly one of the operands has a value of true. - + @@ -402,16 +402,16 @@ set A set is a collection of entities, for which there may be zero members. - + collection of documents - http://purl.org/ontology/bibo/Collection A collection of documents is a non-zero set of documents. - + http://purl.org/ontology/bibo/Collection + @@ -419,7 +419,7 @@ website A website is a collection of documents published on the World Wide Web. - + @@ -427,7 +427,7 @@ process number process number is a number associated with a process that denotes its ordinal position in a set of processes. - + @@ -435,7 +435,7 @@ edition number An edition number is count of a literary work edited and published, as by a certain editor or in a certain manner including being printed during some interval of time. - + @@ -443,7 +443,7 @@ volume number volume number is a count of a sequence of periodicals. - + @@ -452,7 +452,7 @@ Longitude is a geographic position that refers to the angle east or west of a reference meridian between the two geographical poles to another meridian that passes through an arbitrary point. - + @@ -460,7 +460,7 @@ latitude Latitude is a geographic coordinate which refers to the angle from a point on the Earth's surface to the equatorial plane - + @@ -468,7 +468,7 @@ 3D cartesian coordinate A 3D cartesian coordinate is a coordinate that is composed of an x, y and z coordinate. - + @@ -476,7 +476,7 @@ number A number is a mathematical object used to count, label, and measure. - + @@ -484,7 +484,7 @@ variable A variable is a value that may change within the scope of a given problem or set of operations. - + @@ -492,7 +492,7 @@ equation An equation is a mathematical statement that asserts the equality of two expressions. - + @@ -502,7 +502,7 @@ Time intervals are specified as date/datetime ranges. the duration of my life; the duration of a surgical procedure, the moment of death time measurement is a measurement value of the duration of some interval of time or a particular instant of time (against some frame of reference). - + @@ -510,7 +510,7 @@ x cartesian coordinate An x cartesian coordinate is the coordinate of an object onto the x-axis of a cartesian coordinate system. - + @@ -518,7 +518,7 @@ y cartesian coordinate An y cartesian coordinate is the coordinate of an object onto the y-axis of a cartesian coordinate system. - + @@ -526,7 +526,7 @@ z cartesian coordinate A z cartesian coordinate is the coordinate of an object onto the z-axis of a cartesian coordinate system. - + @@ -534,7 +534,7 @@ time interval A time internval is a contiguous temporal region having some duration. - + @@ -543,7 +543,7 @@ A time instant is a temporal region which occurs instantaneously, e.g. having no duration. at this moment; the moment at which a finger is detached in an industrial accident; the moment at which a child is born; the moment of death - + @@ -551,7 +551,7 @@ year A year is a period of time taken by a planet to make one revolution around the sun. - + @@ -559,7 +559,7 @@ month A month is a period of time that divides the year. - + @@ -567,7 +567,7 @@ day A day is a period of 24 hours. - + @@ -575,7 +575,7 @@ century A century is a period of one hundred years. - + @@ -583,7 +583,7 @@ millenium A millenium is a period of 1000 years - + @@ -591,7 +591,7 @@ hour An hour is a period of 60 minutes. - + @@ -599,7 +599,7 @@ minute A minute is a period of 60 seconds. - + @@ -607,7 +607,7 @@ second A second (symbol: s) is the base unit of time in the International System of Units (SI) and is the second division of the hour by sixty, the first division by 60 being the minute. - + @@ -615,7 +615,7 @@ altitude Altitude is a distance above sea level. - + @@ -623,7 +623,7 @@ center of mass The center of mass (aka barycenter) is the weighted average location of all the mass in a body or group of bodies. - + @@ -632,7 +632,7 @@ A data series is a data set composed of related values displayed in a statistical graph. Example: The two series that correspond to "Seasonally adjusted" and "Trend" are composed of the seasonally adjusted value of permits in each month and values from a trend derived from some mathematical tranformation across those values, respectively, in Graph 1 of http://tinyurl.com/opwnvm - + @@ -640,7 +640,7 @@ collection of points A collection of points is a geometric entity that contains a non-zero set of geometric points. - + @@ -648,7 +648,7 @@ diffusion equation A diffusion equation describes density fluctuations in a material undergoing diffusion. - + @@ -656,7 +656,7 @@ movement equation A movement equation describes the displacement of an object in space over time. - + @@ -664,7 +664,7 @@ ordinary differential equation An ordinary differential equation (ODE) is a differential equation in which the unknown function (also known as the dependent variable) is a function of a single independent variable. - + @@ -672,7 +672,7 @@ partial differential equation A partial differential equation (PDE) is a differential equation in which the unknown function is a function of multiple independent variables and the equation involves its partial derivatives. - + @@ -680,7 +680,7 @@ differential equation A differential equation is a mathematical equation for an unknown function of one or several variables that relates the values of the function itself and its derivatives of various orders. - + @@ -689,7 +689,7 @@ A ordinal position is a number that designates the position of an entity from the first entity in an ordered sequence of entities. offset - + @@ -697,7 +697,7 @@ collection A collection is a set for which there exists at least one member, although any member need not to exist at any point in the collection's existence. - + @@ -705,7 +705,7 @@ empty set An empty set is a set for which there are exactly 0 members. - + @@ -713,7 +713,7 @@ probability measure A probability measure is quantity of how likely it is that some event will occur. - + @@ -721,7 +721,7 @@ start time A start time is a time instant pertaining to the time at which a process begins. - + @@ -729,7 +729,7 @@ end time An end time is a time instant pertaining to the time at which a process ends. - + @@ -738,7 +738,7 @@ A p-value or probability value is the probability of obtaining a test statistic at least as extreme as the one that was actually observed, assuming that the null hypothesis is true p-value - + @@ -746,7 +746,7 @@ postal code A postal code is a geographic coordinate composed of a series of letters and/or digits appended to a postal address for the purpose of sorting mail. - + @@ -754,7 +754,7 @@ uncertainty value The uncertainty value (margin of error) of a measurement is a range of values likely to enclose the true value. - + @@ -762,7 +762,7 @@ standard deviation A standard deviation (represented by the symbol σ) is the quantity of variation from the average (mean, or expected value). - + @@ -770,7 +770,7 @@ page number A page number is the count of a page in a sequence of pages. - + @@ -778,7 +778,7 @@ linear position A linear position is the position of some object against a linear positioning system. - + @@ -786,7 +786,7 @@ sequence element position A sequence element position is the position of an element of a linear sequence. - + @@ -795,7 +795,7 @@ A sequence start position is the start position for a sequence of characters. - + @@ -804,7 +804,7 @@ A sequence end position is the position of the last character in a sequence of characters relative to some linear frame of reference. - + @@ -812,7 +812,7 @@ count The number of elements of a finite set of objects. - + @@ -820,7 +820,7 @@ association An assocation is a relationship between two or more entities derived by some informational analysis. - + @@ -828,7 +828,7 @@ statistical association A statistical association is any relationship between two measured quantities that renders them statistically dependent. - + @@ -836,7 +836,7 @@ independent variable An independent variable is a variable that may take on different values independent of other elements in a system. - + @@ -844,7 +844,7 @@ dependent variable A dependent variable is one whose value changes as a consequence of changes in other values in the system. - + @@ -852,7 +852,7 @@ correlation A correlation is a statistical relationship involving dependence between two random variables or datasets. - + @@ -860,7 +860,7 @@ start position A start position is the proximal position of an object relative to an origin in a linear system. - + @@ -868,7 +868,7 @@ interval An interval is a set of real numbers that includes all numbers between any two numbers in the set. - + @@ -876,16 +876,16 @@ default parameter A default parameter is a parameter which has a default value. - + end position - stop position An end position is the distal position of an object relative to an origin in a linear system. - + stop position + @@ -893,7 +893,7 @@ gene-disease association A gene-disease association is an association between a gene and a disease. - + @@ -901,7 +901,7 @@ chemical-disease association A chemical-disease association is an association between a chemical and a disease. - + @@ -909,7 +909,7 @@ age age is the length of time that a person has lived or a thing has existed. - + @@ -917,7 +917,7 @@ ratio A ratio is a relationship between two numbers of the same kind expressed arithmetically as a dimensionless quotient of the two which explicitly indicates how many times the first number contains the second. - + @@ -925,7 +925,7 @@ dose A dose is the quantity of a chemical substance administered to a biological system. - + @@ -933,7 +933,7 @@ effective dose effective dose is the amount of a substance required to produce an effect on a predefined percentage of a population. - + @@ -941,16 +941,16 @@ expected value An expected value (or e-value) is the weighted average of all possible values that a random variable can take on. - + character position - The ordinal position of a character in a sequence of characters. character offset - + The ordinal position of a character in a sequence of characters. + @@ -958,7 +958,7 @@ word start position The position of the first character in a word as an offset from the first character of the text in which it is found. - + @@ -966,17 +966,17 @@ word end position word end position is the position of the last character in a word as an offset from the first character of the text in which it is found. - + control variable - extraneous variable controlled variable + extraneous variable A control variable that is believed to alter the dependent or independent variables, but may not actually be the focus of the experiment. So that variable will be kept constant or monitored to try to minimise its effect on the experiment. - + @@ -984,7 +984,7 @@ text span start position text span start position is the position (offset) of the first character of a text span in relation the text it is from. - + @@ -992,7 +992,7 @@ text span end position text span end position is the position (offset) of the last character of a text span in relation the text it is from. - + @@ -1000,7 +1000,7 @@ t-statistic A t-statistic is a ratio of the departure of an estimated parameter from its notional value and its standard error. - + @@ -1008,7 +1008,7 @@ gene expression value A gene expression value is a measured value obtained from a gene expression experiment. - + @@ -1016,7 +1016,7 @@ differential gene expression ratio A differential gene expression ratio is the ratio of gene expression values from a test sample compared to a control sample. - + @@ -1024,7 +1024,7 @@ vocabulary A vocabulary is a collection of terms. - + @@ -1032,7 +1032,7 @@ t-statistic based increased differential gene expression A t-statistic based increased differential gene expression is a differential gene expression ratio in which the t-statistic is greater than zero. - + @@ -1040,7 +1040,7 @@ t-statistic based decreased differential gene expression A t-statistic based decreased differential gene expression is a differential gene expression ratio in which the t-statistic is less than zero. - + @@ -1048,7 +1048,7 @@ date of database submission A date of database submission refers to the moment in time in which some information was submitted/received to a database system. - + @@ -1056,7 +1056,7 @@ concentration concentration is the quantity of a constituent divided by the total volume of a mixture. - + @@ -1065,7 +1065,7 @@ pH is a measure of the activity of the (solvated) hydrogen ion. pH is defined as the decimal logarithm of the reciprocal of the hydrogen ion activity, aH+, in a solution. - + @@ -1073,17 +1073,17 @@ centrality measure A central tendency measure is a central value or a typical value for a probability distribution. - + mean - A mean is the central tendency of a collection of numbers taken as the sum of the numbers divided by the size of the collection. - arithmeritic mean average - + arithmeritic mean + A mean is the central tendency of a collection of numbers taken as the sum of the numbers divided by the size of the collection. + @@ -1091,7 +1091,7 @@ median A median is the numerical value separating the higher half of a sample, a population, or a probability distribution, from the lower half. - + @@ -1099,7 +1099,7 @@ mode A mode is the value that appears most often in a set of data. - + @@ -1107,16 +1107,16 @@ sum A sum is the result of adding a set of values together. - + minimal value - A minimal value is smallest value of an attribute for the entities in the defined set. min - + A minimal value is smallest value of an attribute for the entities in the defined set. + @@ -1125,7 +1125,7 @@ max A maximal value is largest value of an attribute for the entities in the defined set. - + @@ -1133,7 +1133,7 @@ member count A count of the instances of a class or members in a collection. - + @@ -1142,7 +1142,7 @@ A union is a list of all of the values of an attribute for the entities in the defined set. - + @@ -1150,17 +1150,17 @@ intersection An intersection is a list of only the values of an attribute for the entities in the defined set where all entities have that value. - + sequence + ordered list A sequence is an ordered list of entities. Like a set, it contains members (also called elements, or terms). For example, (M, A, R, Y) is a sequence of letters that differs from (A, R, M, Y), as the ordering matters, and (1, 1, 2, 3, 5, 8), which contains the number 1 at two different positions, is a valid sequence. - ordered list - + @@ -1168,7 +1168,7 @@ gene-disease association linked with causal mutation A gene-variant disease association in which a mutation in the gene/protein results in the development or maintenance of the disease. - + @@ -1177,7 +1177,7 @@ A gene disease association in which the gene is a therapeutic marker for the disease. gene-disease association arising from a therapeutic role of the gene/protein - + @@ -1185,7 +1185,7 @@ gene-disease biomarker association A gene-disease association in which the gene/protein is involved in the etiology or maintenance of the disease. - + @@ -1194,7 +1194,7 @@ gene variant-disease association A gene-disease association in which a sequence variation (a mutation, a SNP) is associated with the disease. - + @@ -1202,7 +1202,7 @@ gene-disease association linked with altered gene expression A gene-disease association in which the disease phenotype is associated with an altered expression of the gene. - + @@ -1211,7 +1211,7 @@ A gene-disease association in which the disease phenotype is associated with post-translational modifications in the protein product. methylation or phosphorylation of protein product - + @@ -1219,7 +1219,7 @@ number of objects produced number of objects produced is a count of objects that were produced in some process. - + @@ -1227,7 +1227,7 @@ number of objects consumed number of objects consumed is a count of objects that were consumed in some process. - + @@ -1235,7 +1235,7 @@ difference in number of objects produced A difference in number of objects produced is a count of the number of objects produced with respect to a second variable (space, time, etc) - + @@ -1243,7 +1243,7 @@ increase in number of objects produced An increase in the number of objects produced is the positive value of a difference in number of objects produced. - + @@ -1251,16 +1251,16 @@ decrease in number of objects produced An decrease in the number of objects produced is the negative value of a difference in number of objects produced. - + database cross-reference - dbxref A database cross-reference is an association between one data item and another. - + dbxref + @@ -1268,7 +1268,7 @@ exact cross-reference An exact cross-reference is a database cross-reference in which one entity is equivalent to the other based on all the entitie's attributes (minus the source). - + @@ -1276,7 +1276,7 @@ slope A slope or gradient of a line describes its steepness, incline, or grade. A higher slope value indicates a steeper incline. Slope is normally described by the ratio of the "rise" divided by the "run" between two points on a line. - + @@ -1284,7 +1284,7 @@ structural motif A structural motif is a pattern in a structure formed by the spatial arrangement of atoms. - + @@ -1293,7 +1293,7 @@ A catalog is a systemic collection of items of the same type. registry - + @@ -1301,7 +1301,7 @@ likelihood Likelihood is the hypothetical probability that an event that has already occurred would yield a specific outcome. - + @@ -1309,7 +1309,7 @@ log likelihood Log likelihood is the natural logarithm of the likelihood function - + @@ -1318,7 +1318,7 @@ A standard score is the (signed) number of standard deviations an observation or datum is above the mean. z-value, z-score, normal score, standardadized variable. - + @@ -1327,7 +1327,7 @@ The set of all numbers x satisfying 0<=x<=1 is an interval which contains 0 and 1, as well as numbers between them. an interval is a set of real numbers with the property that any number that lies between thwo numbers in the set is also included in the set. - + @@ -1337,7 +1337,7 @@ (0,1) is an open interval that is greater than 0 and less than 1. an open interval is an interval that does not include its endpoints. - + @@ -1347,7 +1347,7 @@ A closed interval is an interval that includes its endpoints, and is denoted with square brackets. [0,1] is a closed interval that is greater than or equal to 0 and less than or equal to 1. - + @@ -1356,7 +1356,7 @@ a chemical-pathway association is an association between a chemical and a pathway. drug-pathway association - + @@ -1364,7 +1364,7 @@ left open interval a left open interval is an interval in which there is no element that is smaller than all other elements. - + @@ -1372,7 +1372,7 @@ right open interval a right open interval is an interval in which there is no element that is greater than all other elements. - + @@ -1380,7 +1380,7 @@ right closed interval a right closed interval is an interval in which there is a real number that is larger than all of its elements. - + @@ -1388,7 +1388,7 @@ left closed interval a left closed interval is an interval in which there is a real number that is smaller than all its elements. - + @@ -1396,7 +1396,7 @@ chemical-gene assocation a chemical-gene assocation is an assocation between a chemical and a gene. - + @@ -1404,7 +1404,7 @@ set item set item is an item in a set. - + @@ -1412,7 +1412,7 @@ collection item a collection item is an item in a collection. - + @@ -1420,7 +1420,7 @@ list item a list item is an item in a list. - + @@ -1428,7 +1428,7 @@ ordered list item an ordered list item is an item in an ordered list. - + @@ -1436,7 +1436,7 @@ date of issue the date at which an information content entity was made public. - + @@ -1444,7 +1444,7 @@ author list an ordered list of authors. - + @@ -1452,7 +1452,24 @@ ordered list an ordered list is a list in which items are sequentially ordered. - + + + + + + protein expression value + + A protein expression value is a quantity obtained from a protein expression experiment. + + + + + + copy number variation + + CNV + copy number variation refers to the number of deletions/duplications of a DNA region as compared to some reference state. + @@ -1460,13 +1477,13 @@ generation number generation number is a count of the number of biological reproduction events elapsed from some starting reference point. - + - sio-v1.0.16-math-subset.owl - - + sio-v1.17.0-math-subset.owl + + \ No newline at end of file diff --git a/ontology/sio/release/sio-subset-nlp.owl b/ontology/sio/release/sio-subset-nlp.owl index b6ad3527..5456725d 100644 --- a/ontology/sio/release/sio-subset-nlp.owl +++ b/ontology/sio/release/sio-subset-nlp.owl @@ -11,7 +11,7 @@ denotes is a relation between an entity and what it is a sign or indication of, or what specifically means. the symbol '%' denotes a proportion in relation to a whole. - + @@ -22,7 +22,7 @@ a collection of cars has as a car as a part;a car has an engine as a part; a car has a piston as a part; has part is a transitive, reflexive and antisymmetric relation between a whole and itself or a whole and its part. - + @@ -33,7 +33,7 @@ a car has an engine as a proper part; a car has a piston as a proper part; has proper part is an antisymmetric, irreflexive (normally transitive) relation between a whole and a distinct part. - + @@ -42,16 +42,16 @@ has boundary is a mereological relation between a whole and boundary located at its periphery. the surface of an apple is a 2D boundary of the apple. - + is location of - nlp+ A is location of B iff the spatial region occupied by A has the spatial region occupied by B as a part. [T][R] - + nlp+ + @@ -60,7 +60,7 @@ contains A contains B iff the spatial region occupied by A has the spatial region occupied by B as a part, and B is not part of A. [T] - + @@ -68,10 +68,10 @@ is connected to - core nlp + core A is connected to B iff there exists a fiat, material or temporal path between A and B. [S][T] - + @@ -82,7 +82,7 @@ nlp OBO_REL:adjacent_to A is adjacent to B iff there is a small, but non-zero distance between A and B - + @@ -90,7 +90,7 @@ is supported by is supported by is a relation between a proposition and something that supports the truth of the assertion. - + @@ -98,7 +98,7 @@ is disputed by has disputing evidence is a relation between a proposition and something that disputes (does not directly support) the truth of the assertion. - + @@ -107,7 +107,7 @@ core a represents b when a serves as a sign, symbol or model of b. - + @@ -116,7 +116,7 @@ a car has an engine as a direct part has direct part is a relation to specify a part at a particular level of granularity - + @@ -124,7 +124,7 @@ cites cites is a relation to refer to by way of example, authority or proof. - + @@ -132,7 +132,7 @@ surrounds A 'surrounds' B iff the A 'contains' B and A 'is adjacent to' B or A 'is directly connected to' B. - + @@ -140,7 +140,7 @@ is about is about is a relation between an information content entity and the entity that its primary subject. - + @@ -148,7 +148,7 @@ specifies A relation between an information content entity and a product that it (directly/indirectly) specifies - + @@ -157,7 +157,7 @@ a human has blood as a component part has component part is a relation between a whole and a component part where the component is instrinsic to the whole, and loss of the part would change the kind that it is. - + @@ -166,16 +166,16 @@ core describes is a relation between one entity and another entity that it provides a description (detailed account of). - + refers to - nlp+ core + nlp+ refers to is a relation between one entity and the entity that it makes reference to. - + @@ -185,7 +185,7 @@ mentions references is a relation between one entity and the entity that it makes reference to by name, but is not described by it. - + @@ -194,7 +194,7 @@ is model of is a relation between a model (an artifact) and the entity it purports to represent. the architect builds a model that represents the building she envisions. - + @@ -203,7 +203,7 @@ core in relation to is a comparative relation to indicate that the instance of the class holding the relation exists in relation to another entity. - + @@ -211,7 +211,7 @@ has time boundary - + @@ -219,7 +219,7 @@ has start time - + @@ -227,7 +227,7 @@ has end time - + @@ -235,7 +235,7 @@ has evidence has evidence is a relation between a proposition and something that demonstrates the truth of the assertion. - + @@ -243,7 +243,7 @@ is refuted by has evidence is a relation between a proposition and something that refutes (is incompatible with) the truth of the assertion. - + @@ -251,7 +251,7 @@ has first part has first part is a proper part relation in which the part is the first of a set of linearly ordered parts resulting from the projection of the whole on a linear coordinate system. - + @@ -259,7 +259,7 @@ has last part has last part is a proper part relation in which the part is the last of a set of linearly ordered parts resulting from the projection of the whole on a linear coordinate system. - + @@ -267,7 +267,7 @@ has ordered part has ordered part of is a proper part relation in which the part is one of a set of linearly ordered parts resulting from the projection of the whole on a linear coordinate system. - + @@ -278,17 +278,17 @@ - + is data item in - 'is data item in' is a relation between an entity that is described or referenced in a dataset. core + 'is data item in' is a relation between an entity that is described or referenced in a dataset. - + @@ -297,7 +297,7 @@ A relation between two objects, in which the first object contains information that is used to produce the second object. an open reading frame encodes a protein (it contains information that specifies the amino acid composition and topology) - + @@ -306,7 +306,7 @@ DNA is transcribed into RNA a relation between two information content entities in which one is transcribed into (an exact or similar kind) another through some process. - + @@ -315,7 +315,7 @@ RNA is translated into Protein a relation between two information content entities in which one is translated into (a completely different kind of entity) another through some process. - + @@ -323,11 +323,11 @@ has value nlp - relations core + relations sadi A relation between a informational entity and its actual value (numeric, date, text, etc). - + @@ -335,7 +335,7 @@ plan A plan is a set of intended actions, through which one expects to achieve a goal. - + @@ -343,15 +343,15 @@ generic name A generic name is the preferred name provided by manufacturer. - + language entity - A language entity implements some language specification for the visual interpretation and is part of some document. nlp+ - + A language entity implements some language specification for the visual interpretation and is part of some document. + @@ -359,7 +359,7 @@ visual language entity A visual language entity is a language entity that is expressed through physical expression of manual. - + @@ -367,7 +367,7 @@ question A question is a linguistic expression used to make a request for information. - + @@ -375,7 +375,7 @@ publication A publication is a document that has been made available by a publisher. - + @@ -383,7 +383,7 @@ record A record is a document containing a collection of statements about some entity. - + @@ -391,16 +391,16 @@ specification A specification is a description of the essential technical attributes/requirements for an object or procedure, and may be used to determine that the object / procedure meets its requirements/attributes. - + action specification - An action specification is a specification composed of a sequence of instructions to achieve some objective. effective specification - + An action specification is a specification composed of a sequence of instructions to achieve some objective. + @@ -408,7 +408,7 @@ language Language is a language entity which is the result of encoding and decoding information through systematic creation and usage of systems of symbols, each pairing a specific sign with an intended meaning, established through social conventions - + @@ -416,7 +416,7 @@ book A book is a publication composed of a large number of entries. - + @@ -424,7 +424,7 @@ chapter A chapter is a document section of a book or thesis. - + @@ -432,7 +432,7 @@ character A character is a language symbol used to construct words. - + @@ -440,7 +440,7 @@ novel A novel is a fictitious prose narrative of book length, typically representing character and action with some degree of realism. - + @@ -448,7 +448,7 @@ paragraph A paragraph is a self-contained unit of written discourse consisting of one or more sentences. - + @@ -456,7 +456,7 @@ document section A document section is a component of a document. - + @@ -464,7 +464,7 @@ sentence A sentence is a grammatical unit consisting of one or more words that bear minimal syntactic relation to the words that precede or follow it. - + @@ -472,7 +472,7 @@ word A word is the smallest free form (an item that may be expressed in isolation with semantic or pragmatic content) in a language. - + @@ -480,7 +480,7 @@ identifier An identifier is a label that specifically refers to (identifies) an entity (instance/type). - + @@ -488,7 +488,7 @@ name A name is a label used to identify an entity. - + @@ -496,7 +496,7 @@ preferred name A preferred name is the name that is generally used by some organization. - + @@ -504,7 +504,7 @@ common name A common name is a name that is commonly used. - + @@ -512,7 +512,7 @@ brand name A brand name is a trademarked and marketed name of a product. - + @@ -520,7 +520,7 @@ scientific name A scientific name is a name given through scientific nomenclature. - + @@ -528,7 +528,7 @@ ontology document An ontology document is a document that contains an ontology. - + @@ -536,7 +536,7 @@ descriptor A descriptor (index term, subject term, subject heading) is a term that captures the essence of the topic of a document. - + @@ -544,7 +544,7 @@ definition A definition is a description that succintly characterizes an entity. - + @@ -552,7 +552,7 @@ description A description is language entity in which elements of a language (formal or natural) are used to characterize an entity. - + @@ -560,7 +560,7 @@ category A category is a class of entities having particular shared characteristics. - + @@ -568,7 +568,7 @@ criterion A criterion is a specification to describe properties used for evaluation. - + @@ -577,7 +577,7 @@ An inclusion criterion is a criterion that must be present to satisfy some objective. - + @@ -585,7 +585,7 @@ exclusion criterion An exclusion criterion is a criterion that must be absent to satistify the objective. - + @@ -593,7 +593,7 @@ keyword A keyword is a descriptor in which the association of the word with the entity facilitates information retrieval. - + @@ -601,7 +601,7 @@ document A document is a bounded physical or digital representation of a body of information designed with the capacity (and usually intent) to communicate. - + @@ -609,7 +609,7 @@ manuscript A manuscript is a document prior to publication. - + @@ -617,7 +617,7 @@ note A note is a brief document. - + @@ -625,7 +625,7 @@ patent A patent is an information entity granted by a patent issuing authority which confers upon the patenter the sole right to make, use and sell an invention for a set period of time. - + @@ -633,7 +633,7 @@ article An article is a publication that is stand-alone section of a larger work. - + @@ -641,7 +641,7 @@ blog A blog is a publication accessible at some website and is typically about various experiences. - + @@ -649,7 +649,7 @@ book volume A book volume is a book that is part of a collection. - + @@ -657,7 +657,7 @@ conference proceedings A conference proceedings is a book composed of papers presented at a conference. - + @@ -665,7 +665,7 @@ edited publication An edited publication is a publication that has been examined and potentially changed by an editor. - + @@ -673,7 +673,7 @@ manual A manual is a document that instructs on the usage of a device. - + @@ -681,7 +681,7 @@ technical report A technical report is a publication published by a school or other institution, usually numbered within a series. - + @@ -689,7 +689,7 @@ thesis document A thesis document is the written research component of a post-secondary institution that contains a statement supported by arguments. - + @@ -697,7 +697,7 @@ honor's thesis An honor's thesis is a thesis prepared as a requirement for an honor's undergraduate degree. - + @@ -705,7 +705,7 @@ master's thesis A Master's thesis is a thesis prepared as a requirement for a Master's degree. - + @@ -713,7 +713,7 @@ phd thesis A PhD thesis is a thesis prepared as a requirement for a doctoral degree. - + @@ -721,7 +721,7 @@ booklet A booklet is a document that lacks a named publisher or sponsoring institution. - + @@ -729,7 +729,7 @@ diary A diary is a document which describes day-to-day experiences. - + @@ -737,7 +737,7 @@ document component A bibliographic attribute is an attribute related to publications. - + @@ -745,7 +745,7 @@ address An address is a position that indicates the physical location of some entity using a social convention. - + @@ -753,7 +753,7 @@ citation A citation is a textual entity which denotes a source described in the bibliography or reference section of a document. - + @@ -761,7 +761,7 @@ document title A document title is a textual entity that summarizes the topic of the document in one sentence. - + @@ -769,7 +769,7 @@ reference A reference is a textual entity that describes a single source used in the preparation or development of the work. - + @@ -778,7 +778,7 @@ a label is a term that is associated with some entity - + @@ -786,7 +786,7 @@ language label A language label is a label that denotes the language of a textual entity. - + @@ -794,7 +794,7 @@ first name A first name is a name that denotes a specific individual between members of a group of individuals, whose members usually share the same surname. - + @@ -802,16 +802,16 @@ last name A last name (surname) is a name added to a given name and is part of a personal name and is often the family name. - + personal name - full name A personal name is a name to identify an individual person and usually comprises of a first name and a last name. - + full name + @@ -819,7 +819,7 @@ legal name A legal name is a name given at birth, or which appears on their birth certificate, marriage certificate, or change of name certificate. - + @@ -827,7 +827,7 @@ title A title is a textual entity that summarily describes some entity. - + @@ -835,7 +835,7 @@ document version A document version is a version of a work in some sequence of derivative works. - + @@ -843,7 +843,7 @@ abstract section An abstract section is a document section that provides brief summary of a document that explains the main argument(s), topic(s) or findings. - + @@ -851,7 +851,7 @@ acknowledgements section An acknowledgements section is a document section that identifies individuals, groups or organizations for their support in the development of the work. - + @@ -859,7 +859,7 @@ author contribution section An author contribution section is a document section that describes the contribution of the authors. - + @@ -867,7 +867,7 @@ author section An author section is a document section that lists the contributing authors. - + @@ -875,7 +875,7 @@ bibliography section A bibliography section is a document section that is composed of a list of references used in the development of the work. - + @@ -883,7 +883,7 @@ copyright section A copyright section is a document section that contains a notice of copyright. - + @@ -891,7 +891,7 @@ correspondence section A correspondence section is a document section that contains the details for contacting the corresponding author. - + @@ -899,7 +899,7 @@ discussion section The discussion section is a document section containing a summary of the findings, a reflection on the significance of findings, comparison with related work, among others. - + @@ -907,7 +907,7 @@ introduction section An introduction section is a document section that generally provides background, motivation and goals of the work. - + @@ -915,7 +915,7 @@ materials and methods section The materials and methods section is a document section containing a description of the materials and methods used in the study. - + @@ -923,7 +923,7 @@ materials section The materials section is a document section containing a description of the materials used in the study. - + @@ -931,7 +931,7 @@ methods section The methods section is a document section containing a description of the methods used in the study. - + @@ -939,7 +939,7 @@ results section The results section is a document section describing the main findings of the study. - + @@ -947,7 +947,7 @@ table of contents The table of contents is a document section that lists all sections (and optionally subsections) in a sequential order along with their page number. - + @@ -955,7 +955,7 @@ namespace label A namespace label is a short name for a namespace. - + @@ -963,7 +963,7 @@ proposition A proposition is a sentence expressing something true or false. - + @@ -971,7 +971,7 @@ argument An argument is a set of one or more declarative sentences (or propositions) known as the premises along with another declarative sentence (or proposition) known as the conclusion. - + @@ -979,7 +979,7 @@ premise A premise is a proposition of an argument from which the conclusion is drawn. - + @@ -987,7 +987,7 @@ conclusion A conclusion is a proposition which is reached after considering the evidence, arguments or premises. - + @@ -995,7 +995,7 @@ deductive argument A deductive argument is an argument that asserts that the truth of the conclusion is a logical consequence of the premises. - + @@ -1003,7 +1003,7 @@ inductive argument An inductive argument is an argument that asserts that the truth of the conclusion is supported by the premises. - + @@ -1011,7 +1011,7 @@ sound argument A sound argument is a valid argument with true premises. - + @@ -1019,7 +1019,7 @@ valid argument A valid argument is an argument where the truth of the conclusion is a logical consequence of the premises and (consequently) its corresponding conditional is a necessary truth. - + @@ -1027,7 +1027,7 @@ invalid argument An invalid argument is an argument where the truth of the conclusion is false because it is not a logical consequence of the premises. - + @@ -1035,7 +1035,7 @@ term A term is a word or phrase used to denote one or more entities. - + @@ -1043,7 +1043,7 @@ hypothesis A hypothesis is a proposed explanation for a phenomenon. - + @@ -1051,7 +1051,7 @@ excerpt An excerpt is a contiguous or discontiguous portion of a document. - + @@ -1059,7 +1059,7 @@ quote A quote is a excerpt that is attributed to a particular source. - + @@ -1067,7 +1067,7 @@ web page A web page is a document that is published according to World Wide Web standards. - + @@ -1075,7 +1075,7 @@ email Email message is a digital document that is composed of a header and a body and is transmitted using the SMTP protocol. - + @@ -1083,7 +1083,7 @@ letter A letter is a document that contains a personal communication from one part to another. - + @@ -1091,7 +1091,7 @@ functional specification A functional specification is a specification that describes the characteristics of an object. - + @@ -1099,7 +1099,7 @@ design specification A design specification is a specification that provides precise and explicit information about the requirements for a product design. - + @@ -1107,7 +1107,7 @@ spatial specification A specification for spatial location is an effective specification towards representation spatial position or spatial data. - + @@ -1115,7 +1115,7 @@ coordinate system A coordinate system is a specification for spatial location that uses a set of numbers, or coordinates, to uniquely determine the position of a point or other geometric element. - + @@ -1123,7 +1123,7 @@ cartesian coordinate system A Cartesian coordinate system specifies each point uniquely in a plane by a pair of numerical coordinates, which are the signed distances from the point to two fixed perpendicular directed lines, measured in the same unit of length. - + @@ -1131,7 +1131,7 @@ concept A concept is term that refers to a generalization of a set of attributes or entities. - + @@ -1139,7 +1139,7 @@ polar coordinate system A polar coordinate system is a two-dimensional coordinate system in which each point on a plane is determined by a distance from a fixed point and an angle from a fixed direction. - + @@ -1147,7 +1147,7 @@ positional identifier A positional description is a description of location using some system or frame of reference. - + @@ -1155,7 +1155,7 @@ cylindrical coordinate system A cylindrical coordinate system is a three-dimensional coordinate system that specifies point positions by the distance from a chosen reference axis, the direction from the axis relative to a chosen reference direction, and the distance from a chosen reference plane perpendicular to the axis. - + @@ -1163,7 +1163,7 @@ spherical coordinate system A spherical coordinate system is a coordinate system for three-dimensional space where the position of a point is specified by three numbers: the radial distance of that point from a fixed origin, its polar angle measured from a fixed zenith direction, and the azimuth angle of its orthogonal projection on a reference plane that passes through the origin and is orthogonal to the zenith, measured from a fixed reference direction on that plane. - + @@ -1171,7 +1171,7 @@ OWL ontology An OWL ontology is an ontology as specified by the W3C OWL specification. - + @@ -1179,7 +1179,7 @@ objective An objective is a proposition that indicates a planned or anticipated outcome. - + @@ -1187,7 +1187,7 @@ purpose purpose is the reason for which something is done or created or for which something exists. - + @@ -1195,7 +1195,7 @@ belief A belief is a proposition that is believed to be true. - + @@ -1203,7 +1203,7 @@ primary title A primary title is a title that should be first used in describing some entity. - + @@ -1212,7 +1212,7 @@ A secondary title is a title of lesser importance that should be used after the first title in describing some entity. subtitle, alternative title - + @@ -1221,7 +1221,7 @@ "Total value of permits increased slightly in December" in Graph 1 of http://tinyurl.com/opwnvm A primary graph title is a primary title that describes a statistical graph. - + @@ -1229,7 +1229,7 @@ secondary graph title A secondary graph title is a secondary title that describes a statistical graph. - + @@ -1237,7 +1237,7 @@ phrase A phrase is a group of words functioning as a single unit in the syntax of a sentence. - + @@ -1245,7 +1245,7 @@ clause A clause consists of a subject and a predicate. - + @@ -1253,7 +1253,7 @@ idea An idea is a proposition about some object of conceptual thought. - + @@ -1261,7 +1261,7 @@ structure structure is the specification that refers to the composition and arrangement of parts of an object. - + @@ -1269,7 +1269,7 @@ standard A standard is a socially-agreed upon specification. - + @@ -1277,7 +1277,7 @@ formal specification A formal specification is a mathematical description of software or hardware that may be used to develop an implementation. - + @@ -1285,7 +1285,7 @@ RDFS ontology An RDFS ontology is an ontology that conforms to the syntax and semantics of the Resource Description Framework Schema (RDFS). - + @@ -1293,7 +1293,7 @@ OBO ontology An OBO ontology is an ontology document as specified by the Open Biological Ontology community. - + @@ -1301,7 +1301,7 @@ chemical structure chemical structure is the structure of a chemical entity in terms of its molecular geometry and electronic structure. - + @@ -1310,7 +1310,7 @@ molecular geometry molecular structure is the spatial arrangement of atoms in a molecule and the chemical bonds that hold the atoms together. - + @@ -1318,7 +1318,7 @@ textual entity A textual entity is language entity that is manifested as one or more distinct characters. - + @@ -1326,7 +1326,7 @@ version label A version label is a label for a particular form or variation of an earlier or original type. - + @@ -1335,7 +1335,7 @@ A software version label is a version label for a piece of software. major.minor[.build[.revision]] - + @@ -1343,7 +1343,7 @@ unique identifier A unique identifier is an identifier that uniquely identifies some thing. - + @@ -1351,7 +1351,7 @@ justification A justification is a proposition that defends, explains or excuses some argument. - + @@ -1359,7 +1359,7 @@ design A specification of an object, manifested by an agent, intended to accomplish goals, in a particular environment, using a set of primitive components, satisfying a set of requirements, subject to constraints. - + @@ -1367,7 +1367,7 @@ chemical identifier A chemical identifier is an identifier for a chemical entity - + @@ -1375,7 +1375,7 @@ record identifier A record identifier is an identifier for a database entry. - + @@ -1383,7 +1383,7 @@ physical entity identifier A physical entity identifier is an identifier for a physical entity. - + @@ -1391,7 +1391,7 @@ informational entity identifier An informational entity identifier is an identifier for an informational entity. - + @@ -1399,7 +1399,7 @@ molecular identifier A molecular identifier is an identifier for a molecular entity. - + @@ -1407,7 +1407,7 @@ street name A street name is the token given to identify a particular street. - + @@ -1415,7 +1415,7 @@ apartment number An apartment number is the number assigned to identify an apartment in a building of apartments. - + @@ -1423,7 +1423,7 @@ versioned record A versioned record is a record for which there exists another variant based that was derived via modification of the facts. - + @@ -1431,7 +1431,7 @@ answer An answer is a reply to a question. - + @@ -1439,7 +1439,7 @@ verbal language entity A verbal language entity is a language entity that is manifested through sound. - + @@ -1448,7 +1448,7 @@ A Uniform Resource Locator or Universal Resource Locator (URL) is a specific character string that constitutes a reference to an Internet resource. Uniform Resource Locator - + @@ -1456,7 +1456,7 @@ measurement scale A measurement scale is a functional specification that specifies an allowed range of categories or values. - + @@ -1464,7 +1464,7 @@ nomimal scale A nominal scale of measurement only specifies a limited set of categories. - + @@ -1472,7 +1472,7 @@ binary scale A binary scale is a measurement scale that specifies a choice between two values. - + @@ -1480,7 +1480,7 @@ numeric scale A numeric scale of measurement is one that only specifies numeric values. - + @@ -1488,7 +1488,7 @@ decimal scale A decimal scale of measurement is one that only specifies decimal values. - + @@ -1496,7 +1496,7 @@ integer scale An integer scale of measurement is one that only specifies integer values. - + @@ -1504,7 +1504,7 @@ numeric label A numeric label is a number used as a label. - + @@ -1512,7 +1512,7 @@ standard operating procedure A standard operating procedure is a specification approved for use in specific environments. - + @@ -1520,7 +1520,7 @@ syllable A syllable is a verbal entity of language having one vowel sound, with or without surrounding consonants, forming the whole or a part of a word. - + @@ -1528,7 +1528,7 @@ consonant A consonant is a verbal entity of language that is articulated with complete or partial closure of the vocal tract. - + @@ -1536,7 +1536,7 @@ vowel A vowel is a verbal entity of language that is pronounced with an open vocal tract so that there is no build-up of air pressure at any point above the glottis. - + @@ -1544,7 +1544,7 @@ sign language A sign language (also signed language) is a language that involves manual communication and body language to convey meaning. This can involve simultaneously combining hand shapes, orientation and movement of the hands, arms or body, and facial expressions to fluidly express a speaker's thoughts. - + @@ -1552,7 +1552,7 @@ verbal language A verbal language is a language that uses sounds to communicate. - + @@ -1560,7 +1560,7 @@ written language written language is a language that is communicated through a writing system. - + @@ -1568,7 +1568,7 @@ diagnostic opinion A diagnostic opinion is an opinion resulting from a medical diagnostic procedure. - + @@ -1576,7 +1576,7 @@ opinion An opinion is a belief that is the result of emotion or interpretation of facts. - + @@ -1584,7 +1584,7 @@ syndrome A syndrome is composed of a set of several clinically recognizable features, signs (observed by someone other than the patient), symptoms (reported by the patient), phenomena or characteristics that often occur together. - + @@ -1592,7 +1592,7 @@ prognosis A prognosis is a proposition about the likely course of a disease, the chance of recovery or recurrence. - + @@ -1600,7 +1600,7 @@ report A report is a textual document made that present focused, salient content to a specific audience. - + @@ -1608,7 +1608,7 @@ medical health record A medical health record is a record of a single patient's medical history. - + @@ -1616,7 +1616,7 @@ medical report A medical report is a report prepared by a health care practioner about test outcomes or health status of an individual. - + @@ -1624,7 +1624,7 @@ peer reviewed article A peer reviewed article is an article that has undergone peer-review and deemed acceptable for publication. - + @@ -1632,7 +1632,7 @@ major version number A major version number is a version of a software that exhibits a significant change in functionalilty from a prior version. - + @@ -1640,7 +1640,7 @@ minor version number A minor version number is a version of a software that exhibits minor features or significant fix from a prior version. - + @@ -1648,7 +1648,7 @@ revision number A revision number is a version of a software in which bugs have been fixed from a prior version. - + @@ -1656,16 +1656,16 @@ morpheme A morpheme is the smallest semantically meaningful unit in a language. - + study design - study protocol A study design is a protocol for the proper execution of a study which normally requires a carefullly crafted research question or hypothesis and at least one variable under observation and observed values for that variable. - + study protocol + @@ -1673,7 +1673,7 @@ recipe A recipe is a set of instructions that describe how to prepare or make something. - + @@ -1681,7 +1681,7 @@ experimental protocol An experimental protocol is an action specification with respect to the design and implementation of experiments. In addition to providing a detailed set of procedures and lists of required equipment and instruments, experimental protocols often include information on safety precautions, the calculation of results and reporting standards, including statistical analysis and rules for predefining and documenting excluded data to avoid bias. - + @@ -1689,7 +1689,7 @@ reason A reason is a justification that specifies the motive for an action or a determination. - + @@ -1697,16 +1697,16 @@ speculation speculation is an opinion based on incomplete evidence. - + text span - selector A text span is a subset of contiguous sequence of characters of a textual entity. - + selector + @@ -1714,7 +1714,7 @@ microarray probe set identifier A microarray probe set identifier is an identifier for a set of probe pairs selected to represent expressed sequences on an array. - + @@ -1722,7 +1722,7 @@ genotype A genotype is a functional specification of a biological entity in terms of its genetic composition (or lack thereof). - + @@ -1730,7 +1730,7 @@ vocabulary A vocabulary is a collection of terms. - + @@ -1740,7 +1740,7 @@ electronic configuration electronic structure is the electron configuration is the distribution of electrons of an atom or molecule (or other physical structure) in atomic or molecular orbitals. the electron configuration of the neon atom is 1s2 2s2 2p6. - + @@ -1748,16 +1748,16 @@ crystal structure A crystal structure is the arrangement of atoms or molecules in a crystalline liquid or solid. - + pathway - biological pathway A pathway is an effective specification that outlines a set of actions that forms a way to achieve an objective. - + biological pathway + @@ -1765,7 +1765,7 @@ annotation An annotation is a written explanatory or critical description, or other in-context information (e.g., pattern, motif, link), that has been associated with data or other types of information. - + @@ -1773,7 +1773,7 @@ comment A comment is a verbal or written remark often related to an added piece of information, or an observation or statement. - + @@ -1781,7 +1781,7 @@ issue An issue is a single instance of a periodically published journal, magazine, or newspaper. - + @@ -1789,7 +1789,7 @@ statement A statement is a proposition that is either (a) a meaningful declarative sentence that is either true or false, or (b) that which a true or false declarative sentence asserts. - + @@ -1797,7 +1797,7 @@ software process identifier A software process identifier is an identifier for a software process in some operating system. - + @@ -1805,7 +1805,7 @@ history history is a sequence of past events. - + @@ -1813,7 +1813,7 @@ pharmacokinetic pathway a pharmacokinetic pathway is a metabolic pathway which describes the metabolism of a drug molecule. - + @@ -1821,7 +1821,7 @@ pharmacodynamic pathway a pharmacodynamic pathay is a regulatory pathway in which a drug molecule regulates the activity of one or more components organized in a pathway. - + @@ -1829,7 +1829,7 @@ middle name a middle name is a name assigned to an individual that is not the first or last name. - + @@ -1837,7 +1837,7 @@ middle initial a middle initial is an abbreviated middle name. - + @@ -1845,7 +1845,7 @@ telephone number a telephone number is an identifier used to connect to a physical device capable of transfering voice or data over a network. - + @@ -1853,7 +1853,7 @@ cellular phone number a cellular phone number is a number to connect to a mobile device - + @@ -1861,7 +1861,7 @@ fax number a fax number is a number to connect to fax device - + @@ -1870,7 +1870,7 @@ IP address an IP number is an number to connect to a device on the internet. - + @@ -1878,7 +1878,7 @@ email address an email address is an identifier to send mail to particular electronic mailbox. - + @@ -1886,7 +1886,7 @@ work phone number a work phone number is the number to connect to an phone at a place of work. - + @@ -1894,7 +1894,7 @@ home phone number a home phone number is the number to connect to an phone at a place of residence. - + @@ -1902,7 +1902,7 @@ PDB chain identifier A PDB chain identifier is a alphabetical label to identify a molecule in a structure provided by the Protein DataBank . - + @@ -1910,7 +1910,7 @@ PDB record identifier A PDB record identifier is an identifier for a PDB generated record. - + @@ -1918,7 +1918,7 @@ evolutionary lineage evolutionary lineage is a sequence of species, that form a line of descent, each new species the direct result of speciation from an immediate ancestral species. - + @@ -1926,7 +1926,7 @@ family history family history is the systematic narrative and research of past events relating to a specific family, or specific families. - + @@ -1934,7 +1934,7 @@ biochemical pathway A biochemical pathway specifies a series of biochemical modifications and transformations towards achieving some biological outcome. - + @@ -1942,7 +1942,7 @@ chemical reaction pathway A chemical reaction pathway specifies a series of chemical reactions towards producing some chemical product. - + @@ -1950,7 +1950,7 @@ chemical synthesis pathway A chemical synthesis pathway is a pathway involved in the assembly of a chemical. - + @@ -1958,7 +1958,7 @@ chemical degradation pathway A chemical degradation pathway is a pathway involved in the disassembly of a chemical. - + @@ -1967,7 +1967,7 @@ A metabolic pathway is a series of biochemical reactions that begins with one or more substrates and ends with one or more products. - + @@ -1975,7 +1975,7 @@ regulatory pathway A regulatory pathway is a series of biochemical reactions that lead to the increase or decrease of activity of participating molecular components. - + @@ -1983,13 +1983,13 @@ medical history A medical history is a record of the events of a recipient of medical care. - + - sio-v1.0.16-nlp-subset.owl - - + sio-v1.17.0-nlp-subset.owl + + \ No newline at end of file diff --git a/ontology/sio/release/sio-subset-ovopub.owl b/ontology/sio/release/sio-subset-ovopub.owl index 93611c91..8ca7ad1e 100644 --- a/ontology/sio/release/sio-subset-ovopub.owl +++ b/ontology/sio/release/sio-subset-ovopub.owl @@ -12,15 +12,15 @@ is transitively related to not included in standard distribution ovopub - + ovopub - ovopub+ An ovopub is an information content entity that contains and links to one or more resources and/or statements, including those describing its provenance, and is itself a dereferenceable resource. - + ovopub+ + @@ -29,7 +29,7 @@ A collection ovopub is an ovopub that contains and links to one or more assertion subgraphs and/or ovopubs, as well as statements describing its provenance. It is used to share a specific set of items or restrict a search to the resources contained therein. - + @@ -37,13 +37,13 @@ assertion ovopub An assertion ovopub is an ovopub that contains and links to an assertion subgraph with one or more statements that may be true or false, as well as statements describing its provenance. - + - sio-v1.0.16-ovopub-subset.owl - - + sio-v1.17.0-ovopub-subset.owl + + \ No newline at end of file diff --git a/ontology/sio/release/sio-subset-process.owl b/ontology/sio/release/sio-subset-process.owl index f6fde0b5..f535f53e 100644 --- a/ontology/sio/release/sio-subset-process.owl +++ b/ontology/sio/release/sio-subset-process.owl @@ -1,74 +1,74 @@ process - process+ - core - A process is an entity that is identifiable only through the unfolding of time, has temporal parts, and unless otherwise specified/predicted, cannot be identified from any instant of time in which it exists. - + A process is an entity that is identifiable only through the unfolding of time, has temporal parts, and unless otherwise specified/predicted, cannot be identified from any instant of time in which it exists. + core + process+ + emotion - An emotion is a process (experience) that arises internally or from an involuntary physiological response to a stimulus. - emotion++ - + emotion++ + An emotion is a process (experience) that arises internally or from an involuntary physiological response to a stimulus. + intent - intent is a desire to realize a particular outcome. - + intent is a desire to realize a particular outcome. + perception - perception is the organization, identification, and interpretation of sensory information in order to fabricate a mental representation through the process of transduction, which sensors in the body transform signals from the environment into encoded neural signals. - + perception is the organization, identification, and interpretation of sensory information in order to fabricate a mental representation through the process of transduction, which sensors in the body transform signals from the environment into encoded neural signals. + anger - anger is disgust directed toward an equal status individual. - + anger is disgust directed toward an equal status individual. + hate - Hate is a deep and emotional extreme dislike, directed against a certain object or class of objects. - + Hate is a deep and emotional extreme dislike, directed against a certain object or class of objects. + love - love is an emotion of a strong affection and personal attachment. - + love is an emotion of a strong affection and personal attachment. + chemical synthesis - chemical synthesis is synthesis of a chemical entity from physical precursors through one or more chemical interactions or reactions. - + chemical synthesis is synthesis of a chemical entity from physical precursors through one or more chemical interactions or reactions. + @@ -76,73 +76,73 @@ passive transport - passive transport is the movement of a substance across a membrane and does not require chemical energy. - + passive transport is the movement of a substance across a membrane and does not require chemical energy. + diffusion - diffusion is motion of particles at temperatures above absolute zero. - + diffusion is motion of particles at temperatures above absolute zero. + movement - core - movement is the process in which an object is spatially displaced. - + core + movement is the process in which an object is spatially displaced. + brownian motion - Brownian motion is the seemlingly random movement of particles suspended in a fluid. - + Brownian motion is the seemlingly random movement of particles suspended in a fluid. + osmosis - osmosis is the movement of water molecules through a selectively-permeable membrane down a water potential gradient. - + osmosis is the movement of water molecules through a selectively-permeable membrane down a water potential gradient. + passive movement - passive movement is the process in which an object is spatially displaced without an expenditure of energy contained in molecular bonds. - + passive movement is the process in which an object is spatially displaced without an expenditure of energy contained in molecular bonds. + active movement - active movement is the process in which an object is spatially displaced using some chemical energy. - + active movement is the process in which an object is spatially displaced using some chemical energy. + transporting - transporting is a process in which one object physically moves another object from one location to another. - + transporting is a process in which one object physically moves another object from one location to another. + membrane transport - membrane transport is the movement of molecules across a membrane. - + membrane transport is the movement of molecules across a membrane. + @@ -150,16 +150,16 @@ primary active transport - primary active transport, also called direct active transport, directly uses energy to transport molecules across a membrane. - + primary active transport, also called direct active transport, directly uses energy to transport molecules across a membrane. + secondary active transport - secondary active transport or co-transport uses electrochemical potential difference created by pumping ions out of the cell to transport molecules across a membrane. - + secondary active transport or co-transport uses electrochemical potential difference created by pumping ions out of the cell to transport molecules across a membrane. + @@ -167,1441 +167,1441 @@ symport enabled secondary active transport - symport enabled secondary active transport is a secondary active transfort in which both ion and molecule are transported in the same direction simultaneously. - + symport enabled secondary active transport is a secondary active transfort in which both ion and molecule are transported in the same direction simultaneously. + antiport enabled secondary active transport - antiport enabled secondary active transport is a secondary active transfort in which both ion and molecule are transported in opposite directions simultaneously. - + antiport enabled secondary active transport is a secondary active transfort in which both ion and molecule are transported in opposite directions simultaneously. + locomotion - GO:0040011 - The self-propelled movement of an object. - + GO:0040011 + The self-propelled movement of an object. + birthing - brirthing is the process by which a biological organism is brought into existence. - + brirthing is the process by which a biological organism is brought into existence. + dying - dying is a process in which a biological entity ceases to exist. - + dying is a process in which a biological entity ceases to exist. + biological reproduction - biological reproduction is the biological process by which one or more biological organisms are produced from their "parents". - + biological reproduction is the biological process by which one or more biological organisms are produced from their "parents". + creating - creation - synthesis - production - development - formulation - creating is the process in which an entity comes into existence. - + development + production + creation + synthesis + formulation + creating is the process in which an entity comes into existence. + regulating - regulating is a process that modulates the attributes of an object or process. - regulation - + regulating is a process that modulates the attributes of an object or process. + regulation + biosynthesis - biosynthesis is the synthesis of an organic compound in a living organism, usually aided by enzymes. - + biosynthesis is the synthesis of an organic compound in a living organism, usually aided by enzymes. + destroying - destroying is a process in which something is broken down and/or ceases to exist. - destruction - + destroying is a process in which something is broken down and/or ceases to exist. + destruction + chemical destruction - chemical destruction is destruction of a chemical entity to its chemical constituents through one ormore chemical interactions or reactions. - + chemical destruction is destruction of a chemical entity to its chemical constituents through one ormore chemical interactions or reactions. + interacting - core - interacting is a process characterized by the interaction between two or more entities. - + core + interacting is a process characterized by the interaction between two or more entities. + data transformation - data transformation is the process of applying an algorithmic procedure to some input data and producing some output data. - + data transformation is the process of applying an algorithmic procedure to some input data and producing some output data. + parameterized data transformation - A parameterized data transformation is a data transformation whose behaviour may be modified by one or more parameters. - + A parameterized data transformation is a data transformation whose behaviour may be modified by one or more parameters. + regulation of process - regulation of a process is a process that modulates the duration, frequency, spatial extent of a target process. - + regulation of a process is a process that modulates the duration, frequency, spatial extent of a target process. + regulation of capability - regulation of capability is the regulation of the ability of one party by another. - + regulation of capability is the regulation of the ability of one party by another. + regulation of catalytic capability - the regulation of the enzymatic activity. - + the regulation of the enzymatic activity. + information processing - information processing is a process that involves the generation or use of information. - + information processing is a process that involves the generation or use of information. + sofware execution - software execution is the process of executing software on a computing device. - + software execution is the process of executing software on a computing device. + evolving - evolving is a process that elicits change across successive generations in the inherited characteristics of biological populations. - + evolving is a process that elicits change across successive generations in the inherited characteristics of biological populations. + planning - planning is the agentive process of developing a plan that specifies a set of actions in order to meet a set of goals or objectives. - + planning is the agentive process of developing a plan that specifies a set of actions in order to meet a set of goals or objectives. + learning - learning is the agentive process of acquiring knowledge. - + learning is the agentive process of acquiring knowledge. + comparing - comparison - comparing is the process of examining a set of objects and determining their equality or inequality based on one or more features. - + comparing is the process of examining a set of objects and determining their equality or inequality based on one or more features. + comparison + reasoning - reasoning is the agentive process of using knowledge to evaluate the truth value of a proposition. - + reasoning is the agentive process of using knowledge to evaluate the truth value of a proposition. + investigation - study - investigation is the process of carrying out a plan or procedure so as to discover facts or information about the object of study. - + investigation is the process of carrying out a plan or procedure so as to discover facts or information about the object of study. + study + predicting - predicting is the process of formulating a proposition about a state of affairs which might be realized in the future. - + predicting is the process of formulating a proposition about a state of affairs which might be realized in the future. + affection - affection is an emotion characterized with a feeling or type of love for another living thing. - + affection is an emotion characterized with a feeling or type of love for another living thing. + angst - angst is the intense feeling of apprehension, anxiety or inner turmoil. - + angst is the intense feeling of apprehension, anxiety or inner turmoil. + annoyance - Annoyance is an unpleasant emtion that is characterized by a abnormal or excessive sensitivity to some external stimulus. - + Annoyance is an unpleasant emtion that is characterized by a abnormal or excessive sensitivity to some external stimulus. + anxiety - anxiety is an emotion charactersized by intense feeling of fear and concern coupled with a physical response. - + anxiety is an emotion charactersized by intense feeling of fear and concern coupled with a physical response. + apathy - apathy is an emotion characterized by lack of interest, enthusiasm, or concern. - + apathy is an emotion characterized by lack of interest, enthusiasm, or concern. + arousal - arousal is an emotion characterized by state of reactive to stimuli. It involves the activation of the reticular activating system in the brain stem, the autonomic nervous system and the endocrine system, leading to increased heart rate and blood pressure and a condition of sensory alertness, mobility and readiness to respond. - + arousal is an emotion characterized by state of reactive to stimuli. It involves the activation of the reticular activating system in the brain stem, the autonomic nervous system and the endocrine system, leading to increased heart rate and blood pressure and a condition of sensory alertness, mobility and readiness to respond. + awe - awe is an emotion produced by that which is grand, sublime or powerful and is characterized by a combination of joy, fear and admiration/reverence/respect. - + awe is an emotion produced by that which is grand, sublime or powerful and is characterized by a combination of joy, fear and admiration/reverence/respect. + boldness - boldness is the trait of being willing to undertake things that involve risk or danger. - + boldness is the trait of being willing to undertake things that involve risk or danger. + boredom - boredom is the emotion experience by those not interested in their surroundings or available activities. - + boredom is the emotion experience by those not interested in their surroundings or available activities. + contempt - contempt is disgust towards a lower status individual. - + contempt is disgust towards a lower status individual. + contentment - contentment is an emotion characterized by acknowledgement and satisfaction of the current state of affairs. - + contentment is an emotion characterized by acknowledgement and satisfaction of the current state of affairs. + curiosity - curiosity is the strong desire to know or learn something. - + curiosity is the strong desire to know or learn something. + depression - depressed - depression is an unpleasant emotion linked to aversion to activity that can affect a person's thoughts, behavior, feelings and physical well-being. Depressed individuals may feel sad, anxious, empty, hopeless, worried, helpless, worthless, guilty, irritable, or restless. - + depressed + depression is an unpleasant emotion linked to aversion to activity that can affect a person's thoughts, behavior, feelings and physical well-being. Depressed individuals may feel sad, anxious, empty, hopeless, worried, helpless, worthless, guilty, irritable, or restless. + desire - desire is a strong emotion of wanting to have something or wishing for something to happen. - + desire is a strong emotion of wanting to have something or wishing for something to happen. + despair - despair is depression, hopelessness or lack of hope. - + despair is depression, hopelessness or lack of hope. + disappointment - disappointing - disappointed - disappointment is the feeling of dissatisfaction that follows the failure of expectations or hopes to manifest. - + disappointed + disappointing + disappointment is the feeling of dissatisfaction that follows the failure of expectations or hopes to manifest. + disgust - Disgust is a feeling of revulsion or profound disapproval aroused by something unpleasant or offensive. - + Disgust is a feeling of revulsion or profound disapproval aroused by something unpleasant or offensive. + dread - dread is the instense negative emotion that induces fear and apprehension. - + dread is the instense negative emotion that induces fear and apprehension. + ecstasy - ecstacy is an emotion characterized by a heightened state of consciousness with total involvement of a subject. - + ecstacy is an emotion characterized by a heightened state of consciousness with total involvement of a subject. + positive emotion - A positive emotion is an emotion that feels good. - + A positive emotion is an emotion that feels good. + negative emotion - negative emotion is an emotion that does not feel good. - + negative emotion is an emotion that does not feel good. + embarassment - Embarrassment is the emotion of intense discomfort with oneself, experienced upon having a socially unacceptable act or condition witnessed by or revealed to other. - + Embarrassment is the emotion of intense discomfort with oneself, experienced upon having a socially unacceptable act or condition witnessed by or revealed to other. + envy - envy is an emotion that occurs when a person lacks another's (perceived) superior quality, achievement or possession and wishes that the other lacked it. - + envy is an emotion that occurs when a person lacks another's (perceived) superior quality, achievement or possession and wishes that the other lacked it. + euphoria - euphoria is an emotion characterized by intense feelings of well-being, elation, happiness, ecstasy, excitement, and joy. - + euphoria is an emotion characterized by intense feelings of well-being, elation, happiness, ecstasy, excitement, and joy. + excitement - excitement is a positive emotion of feeling great enthusiasm and eagerness. - + excitement is a positive emotion of feeling great enthusiasm and eagerness. + fear - Fear is a negative emotion induced by a perceived threat that induces one to hide or move quickly away from the location of the perceived threat. - + Fear is a negative emotion induced by a perceived threat that induces one to hide or move quickly away from the location of the perceived threat. + frustration - Frustration is an emotion that arises from the perceived resistance to the fulfillment of individual will. - + Frustration is an emotion that arises from the perceived resistance to the fulfillment of individual will. + gratitude - gratification - appreciation - thankfullness - gratefulness - Gratitude, thankfulness, gratefulness, or appreciation is a feeling, emotion or attitude in acknowledgment of a benefit that one has received or will receive. - + gratification + gratefulness + thankfullness + appreciation + Gratitude, thankfulness, gratefulness, or appreciation is a feeling, emotion or attitude in acknowledgment of a benefit that one has received or will receive. + happiness - happiness is an emotion characterized by positive or pleasant emotions ranging from contentment to intense joy. - + happiness is an emotion characterized by positive or pleasant emotions ranging from contentment to intense joy. + guilt - guilty - Guilt is the emotion borne from feeling responsible for the commission of an offense and arises out of public humiliation. - + Guilt is the emotion borne from feeling responsible for the commission of an offense and arises out of public humiliation. + guilty + grief - grief is an emotion in response to loss, whether physical or abstract including death, unemployment, ill health or the end of a relationship. - + grief is an emotion in response to loss, whether physical or abstract including death, unemployment, ill health or the end of a relationship. + hope - hope is an emotion of belief in a positive outcome related to events and circumstances in one's life. - + hope is an emotion of belief in a positive outcome related to events and circumstances in one's life. + hostility - Hostility is the intense negative emotion of being in conflict or opposition to someone or something. - + Hostility is the intense negative emotion of being in conflict or opposition to someone or something. + hurt - hurt is an unpleasant feeling, emotion or sensation. - + hurt is an unpleasant feeling, emotion or sensation. + hysteria - Hysteria is an unmanageable emotion. - + Hysteria is an unmanageable emotion. + indifference - indifference is an emotion characterized by lack of interest, concern, or sympathy. - + indifference is an emotion characterized by lack of interest, concern, or sympathy. + interest - interest is the emotion of wanting to know or learn about something or someone. - + interest is the emotion of wanting to know or learn about something or someone. + jealousy - jealousy is an emotion and typically refers to the negative thoughts and feelings of insecurity, fear, and anxiety over an anticipated loss of something that the person values, particularly in reference to a human connection. - + jealousy is an emotion and typically refers to the negative thoughts and feelings of insecurity, fear, and anxiety over an anticipated loss of something that the person values, particularly in reference to a human connection. + joy - joy is an emotion of intense happiness. - + joy is an emotion of intense happiness. + loathing - loathing is an intense dislike or disgust. - + loathing is an intense dislike or disgust. + loneliness - Loneliness is an unpleasant emotion in which a person feels a strong sense of emptiness, yearning distress and solitude resulting from inadequate quantity or quality of social relationships. - + Loneliness is an unpleasant emotion in which a person feels a strong sense of emptiness, yearning distress and solitude resulting from inadequate quantity or quality of social relationships. + lust - lust is the strong desire for sex. - + lust is the strong desire for sex. + misery - misery is a feeling of great unhappiness, suffering and/or pain. - + misery is a feeling of great unhappiness, suffering and/or pain. + panic - Panic is a sudden emotion of fear which is so strong as to dominate or prevent reason and logical thinking, replacing it with overwhelming feelings of anxiety and frantic agitation consistent with an animalistic fight-or-flight reaction. - + Panic is a sudden emotion of fear which is so strong as to dominate or prevent reason and logical thinking, replacing it with overwhelming feelings of anxiety and frantic agitation consistent with an animalistic fight-or-flight reaction. + passion - passion is the intense desire for something. - + passion is the intense desire for something. + pity - Pity is the emotion of sadness or sorrow for another. - + Pity is the emotion of sadness or sorrow for another. + pleasure - pleasure is an emotion of happy satisfaction and enjoyment. - + pleasure is an emotion of happy satisfaction and enjoyment. + pride - pride is an emotion of satisfaction of attachment toward one's own or another's choices and actions, or toward a whole group of people, and is a product of praise, independent self-reflection, or a fulfilled feeling of belonging. - + pride is an emotion of satisfaction of attachment toward one's own or another's choices and actions, or toward a whole group of people, and is a product of praise, independent self-reflection, or a fulfilled feeling of belonging. + rage - Rage is a feeling of intense anger that is associated with the Fight-or-flight response. - + Rage is a feeling of intense anger that is associated with the Fight-or-flight response. + regret - regret is a feeling of sadness, repentance, or disappointment over something that has happened or been done. - + regret is a feeling of sadness, repentance, or disappointment over something that has happened or been done. + remorse - remorse is an emotion of personal regret felt by a person after he or she has committed an act which they deem to be shameful, hurtful, or violent. - + remorse is an emotion of personal regret felt by a person after he or she has committed an act which they deem to be shameful, hurtful, or violent. + sadness - unhappiness - sad - unhappy - sadness is emotional pain associated with, or characterized by feelings of disadvantage, loss, despair, helplessness, sorrow, and rage. - + unhappiness + sad + unhappy + sadness is emotional pain associated with, or characterized by feelings of disadvantage, loss, despair, helplessness, sorrow, and rage. + satisfaction - satisfaction is an emotion of fulfillment of one's wishes, expectations, or needs, or the pleasure derived from this. - + satisfaction is an emotion of fulfillment of one's wishes, expectations, or needs, or the pleasure derived from this. + shame - shame is the emotion borne from feeling responsible for the commission of an offense. - + shame is the emotion borne from feeling responsible for the commission of an offense. + shock - shock is an emotion of sudden upset or surprise. - + shock is an emotion of sudden upset or surprise. + shyness - shyness is an emotion of apprehension, lack of comfort, or awkwardness experienced when in proximity to, approaching, or being approached by other individuals, especially in new situations or with unfamiliar individuals. - + shyness is an emotion of apprehension, lack of comfort, or awkwardness experienced when in proximity to, approaching, or being approached by other individuals, especially in new situations or with unfamiliar individuals. + sorrow - sorrow is the emotion that is characterized by a long term state of intense sadness, distress and a degree of resignation (not accepting). - + sorrow is the emotion that is characterized by a long term state of intense sadness, distress and a degree of resignation (not accepting). + suffering - Suffering is the unpleasant emotion and aversion associated with the perception of harm or threat of harm in an individual. - + Suffering is the unpleasant emotion and aversion associated with the perception of harm or threat of harm in an individual. + surprise - surprise is a brief emotion experienced as the result of an unexpected event. - + surprise is a brief emotion experienced as the result of an unexpected event. + terror - terror is the extreme feeling of fear. - + terror is the extreme feeling of fear. + wonder - wonder is an emotion of perceiving something very rare or unexpected, but not threatening. - + wonder is an emotion of perceiving something very rare or unexpected, but not threatening. + worry - worry is the emotion characterized by concer over a real or imaginary issue. - + worry is the emotion characterized by concer over a real or imaginary issue. + modifying - modification - modifying is the process by which an entity gains or loses parts, qualities, roles, dispositions, functions, etc, but maintains their identity through these changes. - + modification + modifying is the process by which an entity gains or loses parts, qualities, roles, dispositions, functions, etc, but maintains their identity through these changes. + reproducing - reproducing is a process characterized by creation of an entity that is similar or exactly the same as the template from which it is derived. - + reproducing is a process characterized by creation of an entity that is similar or exactly the same as the template from which it is derived. + conversing - conversing a form of interactive, spontaneous communication between two or more agents who are following rules of etiquette. - + conversing a form of interactive, spontaneous communication between two or more agents who are following rules of etiquette. + apprehension - apprehension is the negative emotion that something unpleasant will occur. - + apprehension is the negative emotion that something unpleasant will occur. + resentment - resentment is disgust directed toward a higher status individual. - + resentment is disgust directed toward a higher status individual. + pain - Pain is an unpleasant sensory and emotional experience associated with actual or potential tissue damage, or described in terms of such damage. - + Pain is an unpleasant sensory and emotional experience associated with actual or potential tissue damage, or described in terms of such damage. + communicating - communication - communicating is the process of conveying information through the exchange of thoughts, messages, or information, as by speech, visuals, signals, writing, or behaviour. - + communicating is the process of conveying information through the exchange of thoughts, messages, or information, as by speech, visuals, signals, writing, or behaviour. + communication + observational study - observational study draws inferences about the possible effect of a treatment on subjects, where the assignment of subjects into a treated group versus a control group is outside the control of the investigator - + observational study draws inferences about the possible effect of a treatment on subjects, where the assignment of subjects into a treated group versus a control group is outside the control of the investigator + experiment - An experiment is an investigation that has the goal of verifying, falsifying, or establishing the validity of a hypothesis. - study - + An experiment is an investigation that has the goal of verifying, falsifying, or establishing the validity of a hypothesis. + study + literature curation - literature curation is the process of an agent selecting and extracting terms and phrases from a document. - + literature curation is the process of an agent selecting and extracting terms and phrases from a document. + procedure - A procedure is a process that attempts to achieve one or more objectives by following an established set of actions. - + A procedure is a process that attempts to achieve one or more objectives by following an established set of actions. + clinical trial - A clinical trial is an intervention trial to determine the safety and efficacy of medical interventions (e.g., drugs, diagnostics, devices, therapy protocols). - + A clinical trial is an intervention trial to determine the safety and efficacy of medical interventions (e.g., drugs, diagnostics, devices, therapy protocols). + medical diagnosis - A medical diagnosis (often simply termed diagnosis) refers to the process of attempting to determine or identify a possible disease or disorder. - + A medical diagnosis (often simply termed diagnosis) refers to the process of attempting to determine or identify a possible disease or disorder. + differential diagnosis - A differential diagnosis (sometimes abbreviated DDx, ddx, DD, D/Dx, or ΔΔ) is a systematic diagnostic method used to identify the presence of an entity where multiple alternatives are possible (and the process may be termed differential diagnostic procedure), and may also refer to any of the included candidate alternatives (which may also be termed candidate condition). - + A differential diagnosis (sometimes abbreviated DDx, ddx, DD, D/Dx, or ΔΔ) is a systematic diagnostic method used to identify the presence of an entity where multiple alternatives are possible (and the process may be termed differential diagnostic procedure), and may also refer to any of the included candidate alternatives (which may also be termed candidate condition). + drug effect - A drug effect is a chemical interaction in which a chemical elicits a marked characteristic of a biological system. - + A drug effect is a chemical interaction in which a chemical elicits a marked characteristic of a biological system. + drug drug interaction - A drug-drug interaction is an interaction in which two drugs interact in such a way to produce a non-additive biological response. - + A drug-drug interaction is an interaction in which two drugs interact in such a way to produce a non-additive biological response. + assay - An assay is an investigative (analytic) procedure in laboratory medicine, pharmacology, environmental biology, and molecular biology for qualitatively assessing or quantitatively measuring the presence or amount or the functional activity of a target entity (the analyte) which can be a drug or biochemical substance or a cell in an organism or organic sample. - + An assay is an investigative (analytic) procedure in laboratory medicine, pharmacology, environmental biology, and molecular biology for qualitatively assessing or quantitatively measuring the presence or amount or the functional activity of a target entity (the analyte) which can be a drug or biochemical substance or a cell in an organism or organic sample. + diagnostic test - A diagnostic test is a procedure performed to confirm, or determine the presence of disease in an individual suspected of having the disease, usually following the report of symptoms, or based on the results of other medical tests. - + A diagnostic test is a procedure performed to confirm, or determine the presence of disease in an individual suspected of having the disease, usually following the report of symptoms, or based on the results of other medical tests. + medical screening - A medical screening is a medical test or series used to detect or predict the presence of disease in individuals at risk for disease within a defined group, such as a population, family, or workforce - + A medical screening is a medical test or series used to detect or predict the presence of disease in individuals at risk for disease within a defined group, such as a population, family, or workforce + medical procedure - A medical procedure is a procedure to identify, examine, alleviate or eliminate an undesirable biological disease or disorder. - + A medical procedure is a procedure to identify, examine, alleviate or eliminate an undesirable biological disease or disorder. + intervention study - An intervention study has the objective of improving the condition of an individual or a group of individuals, and demonstrates the magnitude of that capability by comparing it to a control group. - + An intervention study has the objective of improving the condition of an individual or a group of individuals, and demonstrates the magnitude of that capability by comparing it to a control group. + sampling - sampling is the act of obtaining a sample, whether through selection, collection or preparation. - + sampling is the act of obtaining a sample, whether through selection, collection or preparation. + data analysis - data analysis is a process of inspecting, cleaning, transforming, and modeling data with the goal of highlighting useful information, suggesting conclusions, and supporting decision making. - + data analysis is a process of inspecting, cleaning, transforming, and modeling data with the goal of highlighting useful information, suggesting conclusions, and supporting decision making. + data collection - data collection is the process of acquiring information. - + data collection is the process of acquiring information. + measuring - measurement - measuring is the process of determining the size, amount, or degree of (something) by using an instrument or device marked in standard units - + measurement + measuring is the process of determining the size, amount, or degree of (something) by using an instrument or device marked in standard units + observing - observation - observing is a process of passive interaction in which one entity makes note of attributes of one or more entities. - + observation + observing is a process of passive interaction in which one entity makes note of attributes of one or more entities. + gesturing - gesturing is a form of non-verbal communication in which visible bodily actions communicate particular messages, either in place of speech or together and in parallel with spoken words. Gestures include movement of the hands, face, or other parts of the body. - + gesturing is a form of non-verbal communication in which visible bodily actions communicate particular messages, either in place of speech or together and in parallel with spoken words. Gestures include movement of the hands, face, or other parts of the body. + study - A study is a process that realizes the steps of a study design. - + A study is a process that realizes the steps of a study design. + controlled observational cohort study - In a controlled observational cohort study, two groups of subjects are selected from two populations that are thought to differ in only one characteristic. The groups of subjects are studied for a specific period and contrasted at the end of the study period. - + In a controlled observational cohort study, two groups of subjects are selected from two populations that are thought to differ in only one characteristic. The groups of subjects are studied for a specific period and contrasted at the end of the study period. + microarray experiment - A microarray experiment is an experiment that involves a microarray device to measure the expression of one or more genes. - + A microarray experiment is an experiment that involves a microarray device to measure the expression of one or more genes. + regulation of transcription - A process that modulates the frequency, rate or extent of transcription. - + A process that modulates the frequency, rate or extent of transcription. + regulation of translation - A process that modulates the frequency, rate or extent of translation. - + A process that modulates the frequency, rate or extent of translation. + regulation of molecular quantity - A process that modulates the frequency, rate or extent of process involved in the creation or destruction of a molecule. - + A process that modulates the frequency, rate or extent of process involved in the creation or destruction of a molecule. + regulation of molecular production - A process that modulates the frequency, rate or extent of process involved in the production of a molecule. - + A process that modulates the frequency, rate or extent of process involved in the production of a molecule. + regulation of molecular degradation - A process that modulates the frequency, rate or extent of process involved in the destruction of a molecule. - + A process that modulates the frequency, rate or extent of process involved in the destruction of a molecule. + protein mediated regulation of translation - A process mediated by a protein that modulates the frequency, rate or extent of translation. - + A process mediated by a protein that modulates the frequency, rate or extent of translation. + rna mediated regulation of translation - A process mediated by rna that modulates the frequency, rate or extent of translation. - + A process mediated by rna that modulates the frequency, rate or extent of translation. + process maintenance - The process of maintaining some the frequency, rate or extent of another process. - + The process of maintaining some the frequency, rate or extent of another process. + increased frequency of process from increased regulation - The increase of regulation leads to a increased occurence of processes of the target type. - + The increase of regulation leads to a increased occurence of processes of the target type. + decreased frequency of process from increased regulation - The increase of regulation leads to a decreased occurence of processes of the target process type. - + The increase of regulation leads to a decreased occurence of processes of the target process type. + regulation of process frequency - regulation of a process duration is a process that modulates the frequency of another process relative to some reference process. - + regulation of a process duration is a process that modulates the frequency of another process relative to some reference process. + regulation of process duration - regulation of a process duration is a process that modulates the duration of another process relative to some reference process. - + regulation of a process duration is a process that modulates the duration of another process relative to some reference process. + increased duration of process from increased regulation - increased duration of process from increased regulation is a process in which the duration of the target process is increased as a result of increased regulation. - + increased duration of process from increased regulation is a process in which the duration of the target process is increased as a result of increased regulation. + decreased duration of process from increased regulation - decreased duration of process from increased regulation is a process in which the duration of the target process is decreased as a result of increased regulation. - + decreased duration of process from increased regulation is a process in which the duration of the target process is decreased as a result of increased regulation. + regulation of process spatial extent - heating the solution causes greater diffusion of a chemical. - regulation of a process spatial extent is a process that modulates the spatial extent of another process relative to some reference process. - + heating the solution causes greater diffusion of a chemical. + regulation of a process spatial extent is a process that modulates the spatial extent of another process relative to some reference process. + increased spatial extent of process from increased regulation - The increase of regulation leads to a increased spatial extent of the target process. - + The increase of regulation leads to a increased spatial extent of the target process. + decreased spatial extent of process from decreased regulation - The increase of regulation leads to a decreased spatial extent of the target process. - + The increase of regulation leads to a decreased spatial extent of the target process. + maintenance of spatial extent of process - maintenance of spatial extent of process is a regulation of a process' spatial extent within some specified parameter. - + maintenance of spatial extent of process is a regulation of a process' spatial extent within some specified parameter. + maintenance of duration of process - maintenance of duration of process is a process that regulates a target process to maintain its duration within an expected interval. - + maintenance of duration of process is a process that regulates a target process to maintain its duration within an expected interval. + maintenance of frequency of process - maintenance of frequency of process is a process that regulates the number of occurences of a target process type to a specified number or interval. - + maintenance of frequency of process is a process that regulates the number of occurences of a target process type to a specified number or interval. + regulation of object quantity - regulation of a participant quantity is the regulation of a process in which the quantity of its partcipants is changed. - + regulation of a participant quantity is the regulation of a process in which the quantity of its partcipants is changed. + increased object production from increased regulation - increased regulation leads to an increase in the number of target objects of a specified type. - + increased regulation leads to an increase in the number of target objects of a specified type. + decreased object production from increased regulation - increased regulation leads to a decrease in the number of target objects of a specified type. - + increased regulation leads to a decrease in the number of target objects of a specified type. + increased object consumption from increased regulation - increased regulation leads to an increase in the consumption of an object of specified type. - + increased regulation leads to an increase in the consumption of an object of specified type. + decreased object consumption from increased regulation - increased regulation leads to an decrease in the consumption of an object of specified type. - + increased regulation leads to an decrease in the consumption of an object of specified type. + regulation of object consumption - A process that modulates the frequency, rate or extent of process involved in the consumption of an object. - + A process that modulates the frequency, rate or extent of process involved in the consumption of an object. + regulation of object production - regulation of a participant quantity is the regulation of a process in which the quantity of a selected participant is increased. - + regulation of a participant quantity is the regulation of a process in which the quantity of a selected participant is increased. + maintenance of quantity of object production - maintenance of quantity of object production is a regulation of object production in which the number of objects produced is held more or less constant. - + maintenance of quantity of object production is a regulation of object production in which the number of objects produced is held more or less constant. + maintenance of level of object consumption - regulation of a participant quantity is the regulation of a process in which the quantity of a selected participant is maintained at a steady level. - + regulation of a participant quantity is the regulation of a process in which the quantity of a selected participant is maintained at a steady level. + mass spectrometry experiment - A mass spectrometry experiment is an experiment that involves the use of a mass spectrometer. - + A mass spectrometry experiment is an experiment that involves the use of a mass spectrometer. + web service invocation - A web service invocation involves the execution of a web service. - + A web service invocation involves the execution of a web service. + SADI web service invocation - A SADI web service invocation is the excution of a SADI web service. - sadi - + A SADI web service invocation is the excution of a SADI web service. + sadi + behaviour - Behaviour is the set of actions and mannerisms made by systems (biological or otherwise) in response to stimuli or inputs, whether internal or external, conscious or subconscious, overt or covert, and voluntary or involuntary. - core - behaviour+ - + behaviour+ + core + Behaviour is the set of actions and mannerisms made by systems (biological or otherwise) in response to stimuli or inputs, whether internal or external, conscious or subconscious, overt or covert, and voluntary or involuntary. + increased molecular degradation from increased regulation - A process that increases the frequency, rate or extent of process involved in the destruction of a molecule as a result of increased regulation. - + A process that increases the frequency, rate or extent of process involved in the destruction of a molecule as a result of increased regulation. + decreased molecular degradation from decreased regulation - A process that decreases the frequency, rate or extent of process involved in the destruction of a molecule as a result of decreased regulation. - + A process that decreases the frequency, rate or extent of process involved in the destruction of a molecule as a result of decreased regulation. + increased molecular degradation from decreased regulation - A process that increases the frequency, rate or extent of process involved in the destruction of a molecule as a result of decreased regulation. - + A process that increases the frequency, rate or extent of process involved in the destruction of a molecule as a result of decreased regulation. + decreased molecular degradation from increased regulation - A process that decreases the frequency, rate or extent of process involved in the destruction of a molecule as a result of increased regulation. - + A process that decreases the frequency, rate or extent of process involved in the destruction of a molecule as a result of increased regulation. + increased molecular production from increased regulation - A process that increases the frequency, rate or extent of process involved in the production of a molecule as a result of increased regulation. - + A process that increases the frequency, rate or extent of process involved in the production of a molecule as a result of increased regulation. + decreased molecular production from increased regulation - A process that decreases the frequency, rate or extent of process involved in the production of a molecule as a result of increased regulation. - + A process that decreases the frequency, rate or extent of process involved in the production of a molecule as a result of increased regulation. + increased molecular production from decreased regulation - A process that increases the frequency, rate or extent of process involved in the production of a molecule as a result of decreased regulation. - + A process that increases the frequency, rate or extent of process involved in the production of a molecule as a result of decreased regulation. + decreased molecular production from decreased regulation - A process that decreases the frequency, rate or extent of process involved in the production of a molecule as a result of decreased regulation. - + A process that decreases the frequency, rate or extent of process involved in the production of a molecule as a result of decreased regulation. + increased chemical destruction - increased chemical destruction is a process in which there is an increase in the amount of chemical destroyed relative to some reference process - + increased chemical destruction is a process in which there is an increase in the amount of chemical destroyed relative to some reference process + decreased chemical destruction - decreased chemical destruction is a process in which there is a decrease in the amount of chemical destroyed relative to some reference process - + decreased chemical destruction is a process in which there is a decrease in the amount of chemical destroyed relative to some reference process + humiliation - Humiliation is the abasement of pride, which creates mortification or leads to a state of being humbled or reduced to lowliness or submission. - + Humiliation is the abasement of pride, which creates mortification or leads to a state of being humbled or reduced to lowliness or submission. + hunger - hunger is the craving for food. - + hunger is the craving for food. + discouragement - Discouragement is the emtion of having lost confidence or enthusiasm. - discouraged - + discouraged + Discouragement is the emtion of having lost confidence or enthusiasm. + satisfaction - contentment - pleasure - satisfaction is the emotion of fulfillling one's wishes, expectations, or needs. - + pleasure + contentment + satisfaction is the emotion of fulfillling one's wishes, expectations, or needs. + suicidal - suicidal is the emotion of being deeply unhappy or depressed with thoughts of killing one's self. - + suicidal is the emotion of being deeply unhappy or depressed with thoughts of killing one's self. + irritability - irritability is the negative emotion of quick excitability to annoyance, impatience, or anger. - irritable - + irritability is the negative emotion of quick excitability to annoyance, impatience, or anger. + irritable + indecision - indecisiveness - indecision is the emotion of being unable to choose between two or more possible courses of action. - + indecision is the emotion of being unable to choose between two or more possible courses of action. + indecisiveness + chemical interaction - A chemical interaction is a biochemical process in which chemical entities interact through some set of attractive forces. - biopax:Interaction - + A chemical interaction is a biochemical process in which chemical entities interact through some set of attractive forces. + biopax:Interaction + biochemical reaction - biopax:Conversion - biopax:BiochemicalReaction - A biochemical reaction is a biochemical process that involves the conversion of at least one chemical participant (target) into another (product) by an enzyme (agent). - + biopax:Conversion + biopax:BiochemicalReaction + A biochemical reaction is a biochemical process that involves the conversion of at least one chemical participant (target) into another (product) by an enzyme (agent). + chemical transport - biopax:Transport - chemical transport is the directed movement of a chemical entity by some agent (e.g. transporter). - + biopax:Transport + chemical transport is the directed movement of a chemical entity by some agent (e.g. transporter). + active transport - biopax:TransportWithBiochemicalReaction - active transport is the movement of a substance across a membrane against its concentration gradient (from low to high concentration) and requires chemical energy. - + biopax:TransportWithBiochemicalReaction + active transport is the movement of a substance across a membrane against its concentration gradient (from low to high concentration) and requires chemical energy. + molecular complex formation - molecular complex formation is the process of forming a molecular complex from its constituent parts. - + molecular complex formation is the process of forming a molecular complex from its constituent parts. + molecular complex dissociation - molecular complex disassociation is the process of dissambly of a molecular complex into its constitutent parts. - + molecular complex disassociation is the process of dissambly of a molecular complex into its constitutent parts. + regulation of biochemical process - regulation of biochemical process is a process that changes the frequency, rate or extent of a target biochemical process. - + regulation of biochemical process is a process that changes the frequency, rate or extent of a target biochemical process. + @@ -1609,16 +1609,16 @@ biochemical activation - biochemical activation is a molecular interaction that increases the catalytic rate of the target enzyme. - + biochemical activation is a molecular interaction that increases the catalytic rate of the target enzyme. + biochemical inhibition - biochemical inhibition is a molecular interaction that decreases the catalytic rate of the target enzyme. - + biochemical inhibition is a molecular interaction that decreases the catalytic rate of the target enzyme. + @@ -1626,50 +1626,50 @@ process up-regulation - positive regulation - process up-regulation is a process that increases the frequency, rate or extent of one or more processes in relation to a reference state. - + positive regulation + process up-regulation is a process that increases the frequency, rate or extent of one or more processes in relation to a reference state. + process down-regulation - negative regulation - process down-regulation is a process that decreases the frequency, rate or extent of one or more processes in relation to a reference state. - + negative regulation + process down-regulation is a process that decreases the frequency, rate or extent of one or more processes in relation to a reference state. + transcription - transcription is the process of creating a complementary RNA copy of a sequence of DNA. - + transcription is the process of creating a complementary RNA copy of a sequence of DNA. + translation - translation is the process of producing a polypeptide from a ribonucleic acid by a ribosome. - + translation is the process of producing a polypeptide from a ribonucleic acid by a ribosome. + molecular modification - Molecular modification is chemical alteration of a known and previously characterized lead compound for the purpose of enhancing its usefulness as a drug. This could mean enhancing its specificity for a particular body target site, increasing its potency, improving its rate and extent of absorption, modifying to advantage its time course in the body, reducing its toxicity, changing its physical or chemical properties (like solubility) to provide desired features. - + Molecular modification is chemical alteration of a known and previously characterized lead compound for the purpose of enhancing its usefulness as a drug. This could mean enhancing its specificity for a particular body target site, increasing its potency, improving its rate and extent of absorption, modifying to advantage its time course in the body, reducing its toxicity, changing its physical or chemical properties (like solubility) to provide desired features. + metabolism - Metabolism is the set of chemical processes that occur within a living organism in order to maintain life. - + Metabolism is the set of chemical processes that occur within a living organism in order to maintain life. + @@ -1677,168 +1677,168 @@ catabolism - Anabolism is the set of metabolic processes that take apart larger chemical entities units into smaller chemical entities. - + Anabolism is the set of metabolic processes that take apart larger chemical entities units into smaller chemical entities. + anabolism - Anabolism is the set of metabolic processes that construct larger chemical entities units from smaller chemical entities. - + Anabolism is the set of metabolic processes that construct larger chemical entities units from smaller chemical entities. + chemical reaction - A chemical reaction is a process that leads to the transformation of one set of chemical substances to another. - + A chemical reaction is a process that leads to the transformation of one set of chemical substances to another. + acid-base reaction - An acid-base reaction is a chemical reaction between an acid and a base. - + An acid-base reaction is a chemical reaction between an acid and a base. + catalyzed reaction - A catalyzed reaction is a chemical reaction that is facilitated by a catalyst. - + A catalyzed reaction is a chemical reaction that is facilitated by a catalyst. + redox reaction - A redox reaction is a chemical reaction in which there is a net movement of electrons from one reactant to another. - + A redox reaction is a chemical reaction in which there is a net movement of electrons from one reactant to another. + inorganic reaction - An inorganic reaction is a chemical reaction that involves the transformation of inorganic molecules. - + An inorganic reaction is a chemical reaction that involves the transformation of inorganic molecules. + decomposition reaction - A decomposition reaction is an inorganic reaction in which molecule is fragmented into submolecules or atoms. - + A decomposition reaction is an inorganic reaction in which molecule is fragmented into submolecules or atoms. + displacement reaction - A displacement reaction is an inorganic reaction in which a elementary substance displaces and sets free a constituent atom from a molecule. - + A displacement reaction is an inorganic reaction in which a elementary substance displaces and sets free a constituent atom from a molecule. + double displacement reaction - A double displacement reaction is a displacement reaction in which two molecules swap ions, effectively displacing each other to form two new molecules. - + A double displacement reaction is a displacement reaction in which two molecules swap ions, effectively displacing each other to form two new molecules. + single displacement reaction - A single displacement reaction where one atom is transferred out of one molecule and into another. - + A single displacement reaction where one atom is transferred out of one molecule and into another. + synthesis reaction - A synthesis reaction is an inorganic reaction in which two or more molecules are chemically bonded together to produce a single product. - + A synthesis reaction is an inorganic reaction in which two or more molecules are chemically bonded together to produce a single product. + organic reaction - An organic reaction is a chemical reaction involving at least one organic molecule. - + An organic reaction is a chemical reaction involving at least one organic molecule. + isomerization reaction - An isomerization reaction is a chemical reaction in which a molecule is converted into its isomer. - + An isomerization reaction is a chemical reaction in which a molecule is converted into its isomer. + addition reaction - An addition reaction is an organic reaction where two or more molecules combine to form a larger one. Addition reactions are limited to chemical compounds that have multiply-bonded atoms: + An addition reaction is an organic reaction where two or more molecules combine to form a larger one. Addition reactions are limited to chemical compounds that have multiply-bonded atoms: * Molecules with carbon-carbon double bonds or triple bonds - * Molecules with carbon - hetero double bonds like C=O or C=N - + * Molecules with carbon - hetero double bonds like C=O or C=N + polar addition reaction - A polar addition reaction is an addition reaction involving polar residues. - + A polar addition reaction is an addition reaction involving polar residues. + non-polar addition reaction - A non-polar addition reaction is an addition reaction involving non-polar residues. - + A non-polar addition reaction is an addition reaction involving non-polar residues. + free radical addition - A free radical addition is a non-polar addition reaction involving free radicals. - + A free radical addition is a non-polar addition reaction involving free radicals. + nucleophilic addition reaction - A nucleophilic addition reaction is an addition reaction where a pi bond is removed by the creation of two new covalent bonds by the addition from a nucleophile. - + A nucleophilic addition reaction is an addition reaction where a pi bond is removed by the creation of two new covalent bonds by the addition from a nucleophile. + electrophilic addition reaction - An electrophilic addition reaction is a polar addition reaction where a pi bond is removed by the creation of two new covalent bonds. - + An electrophilic addition reaction is a polar addition reaction where a pi bond is removed by the creation of two new covalent bonds. + - sio-v1.0.16-process-subset.owl - - + sio-v1.17.0-process-subset.owl + + \ No newline at end of file diff --git a/ontology/sio/release/sio-subset-relations.owl b/ontology/sio/release/sio-subset-relations.owl index 9a9ea419..4d292d75 100644 --- a/ontology/sio/release/sio-subset-relations.owl +++ b/ontology/sio/release/sio-subset-relations.owl @@ -1,47 +1,47 @@ is related to - A is related to B iff there is some relation between A and B. - core - relations+ + relations+ + core 'is related to' is the top level relation in SIO - + A is related to B iff there is some relation between A and B. + has attribute - core - has attribute is a relation that associates a entity with an attribute where an attribute is an intrinsic characteristic such as a quality, capability, disposition, function, or is an externally derived attribute determined from some descriptor (e.g. a quantity, position, label/identifier) either directly or indirectly through generalization of entities of the same type. + core + has attribute is a relation that associates a entity with an attribute where an attribute is an intrinsic characteristic such as a quality, capability, disposition, function, or is an externally derived attribute determined from some descriptor (e.g. a quantity, position, label/identifier) either directly or indirectly through generalization of entities of the same type. - + is attribute of - is attribute of is a relation that associates an attribute with an entity where an attribute is an intrinsic characteristic such as a quality, capability, disposition, function, or is an externally derived attribute determined from some descriptor (e.g. a quantity, position, label/identifier) either directly or indirectly through generalization of entities of the same type. + is attribute of is a relation that associates an attribute with an entity where an attribute is an intrinsic characteristic such as a quality, capability, disposition, function, or is an externally derived attribute determined from some descriptor (e.g. a quantity, position, label/identifier) either directly or indirectly through generalization of entities of the same type. - + denotes - denotes is a relation between an entity and what it is a sign or indication of, or what specifically means. - the symbol '%' denotes a proportion in relation to a whole. + denotes is a relation between an entity and what it is a sign or indication of, or what specifically means. + the symbol '%' denotes a proportion in relation to a whole. - + @@ -49,18 +49,18 @@ has part - a collection of cars has as a car as a part;a car has an engine as a part; a car has a piston as a part; - has part is a transitive, reflexive and antisymmetric relation between a whole and itself or a whole and its part. + a collection of cars has as a car as a part;a car has an engine as a part; a car has a piston as a part; + has part is a transitive, reflexive and antisymmetric relation between a whole and itself or a whole and its part. - + is time boundary of - + @@ -68,89 +68,89 @@ has proper part - a car has an engine as a proper part; a car has a piston as a proper part; - has proper part is an antisymmetric, irreflexive (normally transitive) relation between a whole and a distinct part. + a car has an engine as a proper part; a car has a piston as a proper part; + has proper part is an antisymmetric, irreflexive (normally transitive) relation between a whole and a distinct part. - + has boundary - has boundary is a mereological relation between a whole and boundary located at its periphery. - the surface of an apple is a 2D boundary of the apple. + has boundary is a mereological relation between a whole and boundary located at its periphery. + the surface of an apple is a 2D boundary of the apple. - + has member - core - a collection of cars has as a car as a member - has member is a mereological relation between a collection and an item. + core + a collection of cars has as a car as a member + has member is a mereological relation between a collection and an item. - + is denoted by - + is located in - A is located in B iff the spatial region occupied by A is part of the spatial region occupied by B. [T][R] - A parasite in the interior of a person's intestine is located in their intestinal lumen. - OBO_REL:located_in - core + A is located in B iff the spatial region occupied by A is part of the spatial region occupied by B. [T][R] + A parasite in the interior of a person's intestine is located in their intestinal lumen. + core + OBO_REL:located_in - + is participant in - a car is a participant in a car race; glucose is a participant in glycolysis - is participant in is a relation that describes the participation of the subject in the (processual) object. + a car is a participant in a car race; glucose is a participant in glycolysis + is participant in is a relation that describes the participation of the subject in the (processual) object. - + is agent in - hexokinase is an agent in the conversion of glucose to glucose-6-phosphate - is agent in is a relation between an entity and a process, where the entity is present throughout the process, no permanent material change occurs, and is a causal participant in the process. - sadi + hexokinase is an agent in the conversion of glucose to glucose-6-phosphate + is agent in is a relation between an entity and a process, where the entity is present throughout the process, no permanent material change occurs, and is a causal participant in the process. + sadi - + is provider of - is provider of is a relation between a source and the entity it makes available. + is provider of is a relation between a source and the entity it makes available. - + has provider - dc:source - is provided by is a relation between an entity and the entity that provides it. + dc:source + is provided by is a relation between an entity and the entity that provides it. - + @@ -158,11 +158,11 @@ is part of - core - OBO_REL:part_of - is part of is a transitive, reflexive and anti-symmetric mereological relation between a whole and itself or a part and its whole. + OBO_REL:part_of + core + is part of is a transitive, reflexive and anti-symmetric mereological relation between a whole and itself or a part and its whole. - + @@ -170,82 +170,82 @@ is proper part of - OBO_REL:proper_part_of - core - is proper part of is an asymmetric, irreflexive (normally transitive) relation between a part and its distinct whole. + OBO_REL:proper_part_of + core + is proper part of is an asymmetric, irreflexive (normally transitive) relation between a part and its distinct whole. - + is member of - is member of is a mereological relation between a item and a collection. + is member of is a mereological relation between a item and a collection. - + is boundary of - is boundary of is a mereological relation between a boundary located at the periphery of a whole. + is boundary of is a mereological relation between a boundary located at the periphery of a whole. - + is contained in - core - OBO_REL:contained_in - A is contained in B iff the spatial region occupied by A is part of the spatial region occupied by B and A is not part of B. [T] + A is contained in B iff the spatial region occupied by A is part of the spatial region occupied by B and A is not part of B. [T] + OBO_REL:contained_in + core - + has participant - OBO_REL:has_participant - core - has participant is a relation that describes the participation of the object in the (processual) subject. + core + OBO_REL:has_participant + has participant is a relation that describes the participation of the object in the (processual) subject. - + has agent - OBO_REL:has_agent - core - sadi - has agent is a relation between a process and an entity, where the entity is present throughout the process and is a causal participant in the process. + core + sadi + OBO_REL:has_agent + has agent is a relation between a process and an entity, where the entity is present throughout the process and is a causal participant in the process. - + is location of - nlp+ - A is location of B iff the spatial region occupied by A has the spatial region occupied by B as a part. [T][R] + A is location of B iff the spatial region occupied by A has the spatial region occupied by B as a part. [T][R] + nlp+ - + contains - A contains B iff the spatial region occupied by A has the spatial region occupied by B as a part, and B is not part of A. [T] + A contains B iff the spatial region occupied by A has the spatial region occupied by B as a part, and B is not part of A. [T] - + @@ -253,337 +253,337 @@ is connected to - core - nlp - A is connected to B iff there exists a fiat, material or temporal path between A and B. [S][T] + nlp + core + A is connected to B iff there exists a fiat, material or temporal path between A and B. [S][T] - + is adjacent to - core - nlp - OBO_REL:adjacent_to - A is adjacent to B iff there is a small, but non-zero distance between A and B + core + nlp + OBO_REL:adjacent_to + A is adjacent to B iff there is a small, but non-zero distance between A and B - + is represented by - is represented by: a relation between an entity and some symbol. + is represented by: a relation between an entity and some symbol. - + is supported by - is supported by is a relation between a proposition and something that supports the truth of the assertion. + is supported by is a relation between a proposition and something that supports the truth of the assertion. - + is disputed by - has disputing evidence is a relation between a proposition and something that disputes (does not directly support) the truth of the assertion. + has disputing evidence is a relation between a proposition and something that disputes (does not directly support) the truth of the assertion. - + is supporting evidence for - + is disputing evidence for - + represents - core - a represents b when a serves as a sign, symbol or model of b. + core + a represents b when a serves as a sign, symbol or model of b. - + is positionally after - is positionally after is a relation between entities placed on a dimensional axis in which the projection of the position of the first entity is numerically greater than the projection of the position of the second entity. + is positionally after is a relation between entities placed on a dimensional axis in which the projection of the position of the first entity is numerically greater than the projection of the position of the second entity. - + is referred to by - A is referred to by B iff B is an informational entity that makes reference to A. + A is referred to by B iff B is an informational entity that makes reference to A. - + has concretization - A has concretization B iff A is an informational entity and B is the a quality of some material entity. + A has concretization B iff A is an informational entity and B is the a quality of some material entity. - + is concretization of - A is concretization of B iff A is a quality of a material entity and B is an informational entity. + A is concretization of B iff A is a quality of a material entity and B is an informational entity. - + is measurement value of - is measurement value of is a relation between a value and the entity that it is a measurement of. + is measurement value of is a relation between a value and the entity that it is a measurement of. - + has measurement value - core - has measurement value is a relation between a quality/realizable and a measurement value. + core + has measurement value is a relation between a quality/realizable and a measurement value. - + has quality - has quality is a relation between an entity and the quality that it bears. + has quality is a relation between an entity and the quality that it bears. - + is quality of - is quality of is a relation between a quality and the entity that it is a property of. + is quality of is a relation between a quality and the entity that it is a property of. - + is source of - is source of is a relation between a source of information about some entity. + is source of is a relation between a source of information about some entity. - + has unit - core - has unit is a relation between a quantity and the unit it is a multiple of. + core + has unit is a relation between a quantity and the unit it is a multiple of. - + is unit of - is unit of is a relation between a unit and a quantity that it is a multiple of. + is unit of is a relation between a unit and a quantity that it is a multiple of. - + has property - has property is a relation between an entity and the quality, capability or role that it and it alone bears. - michel's hair has the quality of being brown in colour. + has property is a relation between an entity and the quality, capability or role that it and it alone bears. + michel's hair has the quality of being brown in colour. - + is property of - is property of is a relation betweena quality, capability or role and the entity that it and it alone bears. + is property of is a relation betweena quality, capability or role and the entity that it and it alone bears. - + has function - has function is the relation between an entity and a function that is ascribed to it. + has function is the relation between an entity and a function that is ascribed to it. - + is function of - is function of is a relation between a function and an entity that it is a property of. + is function of is a relation between a function and an entity that it is a property of. - + is role of - is role of is a relation between a role and the entity that it is a property of. + is role of is a relation between a role and the entity that it is a property of. - + has role - has role is a relation between an entity and a role that it bears. + has role is a relation between an entity and a role that it bears. - + has output - core - sadi - has output is a relation between an process and an entity, where the entity is present at the end of the process. + core + sadi + has output is a relation between an process and an entity, where the entity is present at the end of the process. - + has input - core - sadi - has input is a relation between a process and an entity, where the entity is present at the beginning of the process. + core + sadi + has input is a relation between a process and an entity, where the entity is present at the beginning of the process. - + is input in - glucose and ATP are inputs in the hexokinase-mediated conversion of glucose to glucose-6-phosphate. - is input in is a relation between an entity and a process, where the entity is present at the beginning of the process. - sadi + glucose and ATP are inputs in the hexokinase-mediated conversion of glucose to glucose-6-phosphate. + is input in is a relation between an entity and a process, where the entity is present at the beginning of the process. + sadi - + is output of - glucose-6-phosphate and ADP are outputs in the hexokinase-mediated conversion of glucose to glucose-6-phosphate. - is output of is a relation between an entity and a process, where the entity is present at the end of the process. - sadi + glucose-6-phosphate and ADP are outputs in the hexokinase-mediated conversion of glucose to glucose-6-phosphate. + is output of is a relation between an entity and a process, where the entity is present at the end of the process. + sadi - + is implementation of - is implementation of is a relation between an information entity and a specification that it conforms to. + is implementation of is a relation between an information entity and a specification that it conforms to. - + has implementation - has implementation is a relation between a specification and an implementation that conforms to it. + has implementation is a relation between a specification and an implementation that conforms to it. - + has disposition - has disposition is the relation between an entity and a disposition that it bears. + has disposition is the relation between an entity and a disposition that it bears. - + is disposition of - is disposition of is a relation between a disposition and the entity that it is a property of. + is disposition of is a relation between a disposition and the entity that it is a property of. - + is positionally before - is positionally before is a relation between entities placed on a dimensional axis in which the projection of the position of the first entity is numerically less than the projection of the position of the second entity. + is positionally before is a relation between entities placed on a dimensional axis in which the projection of the position of the first entity is numerically less than the projection of the position of the second entity. - + is directly after - is directly after is a relation between entities placed on a dimensional axis in which the projection of the position of the first entity is numerically greater than the projection of the position of the second entity, and the entities are adjacent to one another. + is directly after is a relation between entities placed on a dimensional axis in which the projection of the position of the first entity is numerically greater than the projection of the position of the second entity, and the entities are adjacent to one another. - + is directly before - is directly before is a relation between entities placed on a dimensional axis in which the projection of the position of the first entity is numerically less than the projection of the position of the second entity, and the entities are adjacent to one another. + is directly before is a relation between entities placed on a dimensional axis in which the projection of the position of the first entity is numerically less than the projection of the position of the second entity, and the entities are adjacent to one another. - + @@ -591,123 +591,123 @@ is causally related with - A transitive, symmetric, temporal relation in which one entity is causally related with another non-identical entity. - core + A transitive, symmetric, temporal relation in which one entity is causally related with another non-identical entity. + core - + is derived from - OBO_REL:derives_from - core - A transitive temporal relation in which one entity was materially formed from another non-identical entity. + core + A transitive temporal relation in which one entity was materially formed from another non-identical entity. + OBO_REL:derives_from - + derives into - a derives to b if and only if a or some part thereof is consumed in the formation of b. + a derives to b if and only if a or some part thereof is consumed in the formation of b. - + immediately derives into - a immediately derives into b if and only if a or some significant part thereof is consumed in the formation of b and there are no identifiable intermediate entities between a and b. + a immediately derives into b if and only if a or some significant part thereof is consumed in the formation of b and there are no identifiable intermediate entities between a and b. - + is immediately derived from - A non-transitive temporal relation in which one entity is immediately derived from a non-identical entity such that there are no intermediate entities between them. + A non-transitive temporal relation in which one entity is immediately derived from a non-identical entity such that there are no intermediate entities between them. - + precedes - core - A transitive, temporal relation in which one process precedes (has occured earlier than) another process. + A transitive, temporal relation in which one process precedes (has occured earlier than) another process. + core - + is preceded by - OBO_REL:preceded_by + OBO_REL:preceded_by - + immediately precedes - A non-transitive temporal relation in which one process immediately precedes another process, such that there is no interval of time between the two processes. + A non-transitive temporal relation in which one process immediately precedes another process, such that there is no interval of time between the two processes. - + is immediately preceded by - A non-transitive temporal relation in which one process is immediately preceded by another process, such that there is no interval of time between the two processes. + A non-transitive temporal relation in which one process is immediately preceded by another process, such that there is no interval of time between the two processes. - + is referenced by - is reference for is a relation between a document that provides information about an entity. + is reference for is a relation between a document that provides information about an entity. - + has source - has source is a relation between an entity and another entity from which it stems from. + has source is a relation between an entity and another entity from which it stems from. - + is annotation of - is annotation of is a relation between some textual entity and the entity that it annotates. + is annotation of is a relation between some textual entity and the entity that it annotates. - + has annotation - document x is annotated with the keywords 'ontology','semantic web' - has annotation is a relation between an entity and some textual anntotation. - is annotated with - was annotated with + document x is annotated with the keywords 'ontology','semantic web' + has annotation is a relation between an entity and some textual anntotation. + is annotated with + was annotated with - + @@ -715,63 +715,63 @@ is variant of - core - is variant of: a relationship indicating that two entities are different (by some measure), but either achieve the same objectives in different ways or are permutations of one another (temporal, logical or otherwise) + core + is variant of: a relationship indicating that two entities are different (by some measure), but either achieve the same objectives in different ways or are permutations of one another (temporal, logical or otherwise) - + has direct part - a car has an engine as a direct part - has direct part is a relation to specify a part at a particular level of granularity + a car has an engine as a direct part + has direct part is a relation to specify a part at a particular level of granularity - + is prior version of - A is prior version of B iff A is a variant of B and B derives from A. + A is prior version of B iff A is a variant of B and B derives from A. - + cites - cites is a relation to refer to by way of example, authority or proof. + cites is a relation to refer to by way of example, authority or proof. - + is cited by - is cited by is a relation from an object that is referred to by way of example, authority or proof. + is cited by is a relation from an object that is referred to by way of example, authority or proof. - + is similar to - is similar to is a relation between two entities that share one or more features. + is similar to is a relation between two entities that share one or more features. - + is subsequent version of - A is subsequent version of B iff A is a variant of B and A derives from B. + A is subsequent version of B iff A is a variant of B and A derives from B. - + @@ -780,25 +780,25 @@ is covalently connected to (transitive) - + has target - has target is a relation between a process and an entity, where the entity is present at the beginning of the process and undergoes a change or transformation in the process. + has target is a relation between a process and an entity, where the entity is present at the beginning of the process and undergoes a change or transformation in the process. - + is target in - glucose is a target in the hexokinase-mediated conversion of glucose to glucose-6-phosphate. - is target in is a relation between an entity and a process, where the entity is present at the beginning of the process and undergoes a change or transformation in the process. + glucose is a target in the hexokinase-mediated conversion of glucose to glucose-6-phosphate. + is target in is a relation between an entity and a process, where the entity is present at the beginning of the process and undergoes a change or transformation in the process. - + @@ -806,84 +806,84 @@ is weakly interacting with (transitive) - is weakly interacting with is a symmetric relation between two molecular entities (or any part thereof) that are interacting through some weak force (van der waals, hydrogen bonds, electrostatic interactions) + is weakly interacting with is a symmetric relation between two molecular entities (or any part thereof) that are interacting through some weak force (van der waals, hydrogen bonds, electrostatic interactions) - + is causally related to - a is causally related to b iff there is a causal chain of events from a to b + a is causally related to b iff there is a causal chain of events from a to b - + is direct part of - core - is direct part of is a relation between a specific part (at some level of granularity) and its whole. + core + is direct part of is a relation between a specific part (at some level of granularity) and its whole. - + is product of - glucose-6-phosphate is the product of the hexokinase-mediated conversion of glucose to glucose-6-phosphate. - is product of is a relation between an entity and a process, where the entity is present at the end of the process as a result of a transformation in the process target. - sadi + glucose-6-phosphate is the product of the hexokinase-mediated conversion of glucose to glucose-6-phosphate. + is product of is a relation between an entity and a process, where the entity is present at the end of the process as a result of a transformation in the process target. + sadi - + has product - has product is a relation between an process and an entity, where a new entity exists at the end of the process. - sadi + has product is a relation between an process and an entity, where a new entity exists at the end of the process. + sadi - + is component part of - core - is component part of is a relation between a component and a whole, where the component is instrinsic to the whole, and loss of the part would change the kind that the whole is. + core + is component part of is a relation between a component and a whole, where the component is instrinsic to the whole, and loss of the part would change the kind that the whole is. - + is spatiotemporally related to - A is spatiotemporally related to B iff A is in the spatial or temporal vicinity of B - core + A is spatiotemporally related to B iff A is in the spatial or temporal vicinity of B + core - + is surrounded by - A 'is surrounded by' B iff the A 'is contained by' B and A 'is adjacent to' B or A 'is directly connected to' B. + A 'is surrounded by' B iff the A 'is contained by' B and A 'is adjacent to' B or A 'is directly connected to' B. - + surrounds - A 'surrounds' B iff the A 'contains' B and A 'is adjacent to' B or A 'is directly connected to' B. + A 'surrounds' B iff the A 'contains' B and A 'is adjacent to' B or A 'is directly connected to' B. - + @@ -891,27 +891,27 @@ overlaps with - A overlaps with B iff there is some C that is part of both A and B. [S][R] + A overlaps with B iff there is some C that is part of both A and B. [S][R] - + is about - is about is a relation between an information content entity and the entity that its primary subject. + is about is a relation between an information content entity and the entity that its primary subject. - + is covalently connected to - is covalently connected to is a relation between an atom and another atom. + is covalently connected to is a relation between an atom and another atom. - + @@ -920,71 +920,71 @@ is weakly interacting with - + specifies - A relation between an information content entity and a product that it (directly/indirectly) specifies + A relation between an information content entity and a product that it (directly/indirectly) specifies - + is specified by - a relation between a product and the information content entity that specifies it. + a relation between a product and the information content entity that specifies it. - + is manifested as - is manifested as is a relation between an expression and its manifestations. - the english language version of 'war of the worlds' is manifested as a collection of english language versions of the book. + is manifested as is a relation between an expression and its manifestations. + the english language version of 'war of the worlds' is manifested as a collection of english language versions of the book. - + is causally related from - a is causally related from b iff there is a causal chain of events from b to a - core + core + a is causally related from b iff there is a causal chain of events from b to a - + realizes - core - realizes is a relation between a process and a realizable entity (role, function, disposition). + core + realizes is a relation between a process and a realizable entity (role, function, disposition). - + is realized in - the role of a patient is realized in medical examination + the role of a patient is realized in medical examination - + satisfies - satisfies is a relation between an entity and the specification or objective that it conforms to. + satisfies is a relation between an entity and the specification or objective that it conforms to. - + @@ -992,166 +992,166 @@ is satisfied by - + has creator - dc:creator - has creator is a relation between an entity and that which created it. - is created by - was created by - the iPhone was created by Apple Inc + dc:creator + has creator is a relation between an entity and that which created it. + is created by + was created by + the iPhone was created by Apple Inc - + is created by - is created by is a relation between an entity and its creator. + is created by is a relation between an entity and its creator. - + has component part - a human has blood as a component part - has component part is a relation between a whole and a component part where the component is instrinsic to the whole, and loss of the part would change the kind that it is. + a human has blood as a component part + has component part is a relation between a whole and a component part where the component is instrinsic to the whole, and loss of the part would change the kind that it is. - + has expression - the story 'war of worlds' is expressed as every language edition of the book 'war of the worlds' + the story 'war of worlds' is expressed as every language edition of the book 'war of the worlds' - + is expression of - every language edition of 'war of the worlds' are expressions of the story of 'war of the worlds' - is expression of is a relation between more concrete expression of some conceptualization. + every language edition of 'war of the worlds' are expressions of the story of 'war of the worlds' + is expression of is a relation between more concrete expression of some conceptualization. - + is broader than (t) - A is broader than B (t) iff for A is broader than B. - http://www.w3.org/2004/02/skos/core#narrowerTransitive + http://www.w3.org/2004/02/skos/core#narrowerTransitive + A is broader than B (t) iff for A is broader than B. - + is narrower than (t) - http://www.w3.org/2004/02/skos/core#broaderTransitive - A is narrower than B (t) iff for A is narrower than B. + http://www.w3.org/2004/02/skos/core#broaderTransitive + A is narrower than B (t) iff for A is narrower than B. - + is generically related with - A is generically related with B iff A is an abstract entity or an information content entity and B is a information content entity or a physical entity, respectively. + A is generically related with B iff A is an abstract entity or an information content entity and B is a information content entity or a physical entity, respectively. - + is manifestation of - + is narrower than - http://www.w3.org/2004/02/skos/core#broader - A is narrower than B iff the meaning of term A is narrower in scope than the meaning of term B + A is narrower than B iff the meaning of term A is narrower in scope than the meaning of term B + http://www.w3.org/2004/02/skos/core#broader - + is broader than - http://www.w3.org/2004/02/skos/core#narrower + http://www.w3.org/2004/02/skos/core#narrower - + is match to - A is match to B iff A and B are terms with similar (related, broad, close, exact) meanings - http://www.w3.org/2004/02/skos/core#relatedMatch + A is match to B iff A and B are terms with similar (related, broad, close, exact) meanings + http://www.w3.org/2004/02/skos/core#relatedMatch - + is exact match to - http://www.w3.org/2004/02/skos/core#exactMatch + http://www.w3.org/2004/02/skos/core#exactMatch - + is close match to - http://www.w3.org/2004/02/skos/core#closeMatch + http://www.w3.org/2004/02/skos/core#closeMatch - + is broad match to - http://www.w3.org/2004/02/skos/core#broadMatch + http://www.w3.org/2004/02/skos/core#broadMatch - + is dissimilar to - is dissimilar to is a relation between two entities in which one is considered dissimilar to the other based on some criteria. + is dissimilar to is a relation between two entities in which one is considered dissimilar to the other based on some criteria. - + is opposite to - hot is the opposite of cold; left is opposite of right - is opposite to is a relation between two entities in which one is diametrically opposed to the other. + hot is the opposite of cold; left is opposite of right + is opposite to is a relation between two entities in which one is diametrically opposed to the other. - + @@ -1159,76 +1159,76 @@ is version of - is version of is a relation that holds between any two versions in which one is a subsequent or alternate version of (through a branch). + is version of is a relation that holds between any two versions in which one is a subsequent or alternate version of (through a branch). - + has parameter - has parameter is a relation between a process and an information content entity which modulates the behaviour of some participant. - sadi + has parameter is a relation between a process and an information content entity which modulates the behaviour of some participant. + sadi - + is parameter in - is parameter in is a relation between a data item and some data transformation process. + is parameter in is a relation between a data item and some data transformation process. - + is described by - is described by is a relation between one entity and another entity that provides a description (detailed account) of it. + is described by is a relation between one entity and another entity that provides a description (detailed account) of it. - + is orthologous to - is orthologous to is a relation between two biological entities that share a common ancestor and occur in different species. + is orthologous to is a relation between two biological entities that share a common ancestor and occur in different species. - + describes - core - describes is a relation between one entity and another entity that it provides a description (detailed account of). + core + describes is a relation between one entity and another entity that it provides a description (detailed account of). - + has capability - SIO has the capability to semantically integrate data. - has capability is a relation between an entity and the capability that it bears. + SIO has the capability to semantically integrate data. + has capability is a relation between an entity and the capability that it bears. - + refers to - nlp+ - core - refers to is a relation between one entity and the entity that it makes reference to. + core + nlp+ + refers to is a relation between one entity and the entity that it makes reference to. - + @@ -1236,87 +1236,87 @@ is subject of - + is paralogous to - is paralogous to is a relation between two entities which indicates their common ancestry as a result of a gene duplication. + is paralogous to is a relation between two entities which indicates their common ancestry as a result of a gene duplication. - + references - core - mentions - references is a relation between one entity and the entity that it makes reference to by name, but is not described by it. + core + mentions + references is a relation between one entity and the entity that it makes reference to by name, but is not described by it. - + is model of - is model of is a relation between a model (an artifact) and the entity it purports to represent. - the architect builds a model that represents the building she envisions. + is model of is a relation between a model (an artifact) and the entity it purports to represent. + the architect builds a model that represents the building she envisions. - + is modelled by - + is xenologous to - a relation between two entities which indicates their common ancestry but due to horizontal gene transfer. + a relation between two entities which indicates their common ancestry but due to horizontal gene transfer. - + has trigger - has trigger is a relation between a realizable and the factor that causes it to be realized. + has trigger is a relation between a realizable and the factor that causes it to be realized. - + is trigger for - + has basis - has basis is a relation between a realizable entity and the quality that forms the basis for it. - the solubility of salt (the disposition) is based on the molecular structure of NaCl (the quality) that allows the polarized water-molecules (the trigger) to break the ion bonds (the realization). + has basis is a relation between a realizable entity and the quality that forms the basis for it. + the solubility of salt (the disposition) is based on the molecular structure of NaCl (the quality) that allows the polarized water-molecules (the trigger) to break the ion bonds (the realization). - + is base for - is base for is a relation between a quality and the realizable entity that it is the basis for. - the solubility of salt (the disposition) is based on the molecular structure of NaCl (the quality) that allows the polarized water-molecules (the trigger) to break the ion bonds (the realization). + is base for is a relation between a quality and the realizable entity that it is the basis for. + the solubility of salt (the disposition) is based on the molecular structure of NaCl (the quality) that allows the polarized water-molecules (the trigger) to break the ion bonds (the realization). - + @@ -1325,7 +1325,7 @@ is realizable property of - + @@ -1333,107 +1333,107 @@ has realizable property - + is capability of - is capability of is a relation between a capability and the entity that bears it. + is capability of is a relation between a capability and the entity that bears it. - + is directly connected to - A is directly connected to B iff there exists a path direclty between A and B. + A is directly connected to B iff there exists a path direclty between A and B. - + transforms into - A transitive temporal relation in which an entity mainstains identity from one state to another. + A transitive temporal relation in which an entity mainstains identity from one state to another. - + immediately transforms into - A temporal relation in which an entity mainstains identity from one state to another. + A temporal relation in which an entity mainstains identity from one state to another. - + is transformed from - A transitive temporal relation in which an entity mainstains identity from one state to another. + A transitive temporal relation in which an entity mainstains identity from one state to another. - + is immediately transformed from - A temporal relation in which an entity mainstains identity from one state to another. + A temporal relation in which an entity mainstains identity from one state to another. - + in relation to - core - in relation to is a comparative relation to indicate that the instance of the class holding the relation exists in relation to another entity. + core + in relation to is a comparative relation to indicate that the instance of the class holding the relation exists in relation to another entity. - + has identifier - a relation between an entity and an identifier. + a relation between an entity and an identifier. - + is identifier for - identifies - a relation between an identifier and an entity. + a relation between an identifier and an entity. + identifies - + has unique identifier - has unique identifier is an inverse functional relation between an entity and an identifier that uniquely identifies it. + has unique identifier is an inverse functional relation between an entity and an identifier that uniquely identifies it. - + is unique identifier for - is unique identifier for is a relation between an identifier and an entity that it uniquely identifies + is unique identifier for is a relation between an identifier and an entity that it uniquely identifies - + @@ -1442,7 +1442,7 @@ has time boundary - + @@ -1450,7 +1450,7 @@ has start time - + @@ -1459,7 +1459,7 @@ has end time - + @@ -1467,145 +1467,145 @@ is start time of - + is end time of - + exists at - core - exists at is a relation between an entity and a time measurement. + core + exists at is a relation between an entity and a time measurement. - + is mutual disposition of - a is mutual disposition of b if and only if the realization of the disposition a necessarily causes the realization of the disposition b. + a is mutual disposition of b if and only if the realization of the disposition a necessarily causes the realization of the disposition b. - + is greater than or equal to - is greater than or equal to is a comparison relation between two quantities in which the first has a value larger or equal to the second. + is greater than or equal to is a comparison relation between two quantities in which the first has a value larger or equal to the second. - + is mutually related to - a is mutually related to b if and only if the realization of the relation of a necessarily causes the realization of a relation to b. + a is mutually related to b if and only if the realization of the relation of a necessarily causes the realization of a relation to b. - + is mutual role of - a is mutual role of b if and only if the realization of role a necessarily causes the realization of role b. + a is mutual role of b if and only if the realization of role a necessarily causes the realization of role b. - + is lesser than or equal to - is greater than to is a comparison relation between two quantities in which the first has a value smaller or equal to the second. + is greater than to is a comparison relation between two quantities in which the first has a value smaller or equal to the second. - + is greater than - is greater than to is a comparison relation between two quantities in which the first has a value larger than the second. + is greater than to is a comparison relation between two quantities in which the first has a value larger than the second. - + is lesser than - is lesser than to is a comparison relation between two quantities in which the first has a value smaller than the second. + is lesser than to is a comparison relation between two quantities in which the first has a value smaller than the second. - + is comparable to - core - is comparable to is a relation between two entities that share at least one feature whose value can be compared. + core + is comparable to is a relation between two entities that share at least one feature whose value can be compared. - + is numerically comparable to - is numerically comparable to is a comparison relation between two quantities whose datatype value can be compared. + is numerically comparable to is a comparison relation between two quantities whose datatype value can be compared. - + is equal to - is equal to is a comparison relation between two quantities whose value are exactly the same. + is equal to is a comparison relation between two quantities whose value are exactly the same. - + is inequal to - is inequal to is a comparison relation between two quantities whose value are not the same. + is inequal to is a comparison relation between two quantities whose value are not the same. - + has evidence - has evidence is a relation between a proposition and something that demonstrates the truth of the assertion. + has evidence is a relation between a proposition and something that demonstrates the truth of the assertion. - + is evidence for - + is refuted by - has evidence is a relation between a proposition and something that refutes (is incompatible with) the truth of the assertion. + has evidence is a relation between a proposition and something that refutes (is incompatible with) the truth of the assertion. - + @@ -1613,148 +1613,148 @@ is refuting evidence for - + measured at - core - measured at is a relation between a measurement value and the time measurement. + core + measured at is a relation between a measurement value and the time measurement. - + in relation from - a in relation from b is a comparative relation in a is the object of reference in a relation with b. + a in relation from b is a comparative relation in a is the object of reference in a relation with b. - + has frequency - has frequency is a relation that specifies the occurence of an object or event + has frequency is a relation that specifies the occurence of an object or event - + is frequency of - is frequency of is a relation between a temporal unit and an object or event + is frequency of is a relation between a temporal unit and an object or event - + has substrate - has substrate is a relation between a process and an object where the object is destroyed by its participation in the process. + has substrate is a relation between a process and an object where the object is destroyed by its participation in the process. - + is first part of - is first part of is a proper part relation in which the part is the first of a set of linearly ordered parts resulting from the projection of the whole on a linear coordinate system. + is first part of is a proper part relation in which the part is the first of a set of linearly ordered parts resulting from the projection of the whole on a linear coordinate system. - + has first part - has first part is a proper part relation in which the part is the first of a set of linearly ordered parts resulting from the projection of the whole on a linear coordinate system. + has first part is a proper part relation in which the part is the first of a set of linearly ordered parts resulting from the projection of the whole on a linear coordinate system. - + has last part - has last part is a proper part relation in which the part is the last of a set of linearly ordered parts resulting from the projection of the whole on a linear coordinate system. + has last part is a proper part relation in which the part is the last of a set of linearly ordered parts resulting from the projection of the whole on a linear coordinate system. - + is last part of - is last part of is a proper part relation in which the part is the last of a set of linearly ordered parts resulting from the projection of the whole on a linear coordinate system. + is last part of is a proper part relation in which the part is the last of a set of linearly ordered parts resulting from the projection of the whole on a linear coordinate system. - + has ordered part - has ordered part of is a proper part relation in which the part is one of a set of linearly ordered parts resulting from the projection of the whole on a linear coordinate system. + has ordered part of is a proper part relation in which the part is one of a set of linearly ordered parts resulting from the projection of the whole on a linear coordinate system. - + is ordered part of - is ordered part of is a proper part relation in which the part is one of a set of linearly ordered parts resulting from the projection of the whole on a linear coordinate system. + is ordered part of is a proper part relation in which the part is one of a set of linearly ordered parts resulting from the projection of the whole on a linear coordinate system. - + is specialization of - http://www.w3.org/ns/prov#specializationOf - a weather forecast for the city of London produced at a specific time is a specialization of a weather forecast for the city of London. - is specialization of is a relation between a more specific instance (in terms of spatial/temporal localization & other attributres) than the other. + http://www.w3.org/ns/prov#specializationOf + a weather forecast for the city of London produced at a specific time is a specialization of a weather forecast for the city of London. + is specialization of is a relation between a more specific instance (in terms of spatial/temporal localization & other attributres) than the other. - + is generalization of - is generalization of is a relation between a more general instance (in terms of spatial/temporal localization & other attributres) than the other. + is generalization of is a relation between a more general instance (in terms of spatial/temporal localization & other attributres) than the other. - + is alternate of - http://www.w3.org/ns/prov#alternateOf - is alternate of relates two specialized instances. - two weather forecasts for the city of London produced at different times or by different organizations (etc) are alternates of each other, and instances of / specializations of forecasts for the city of London. + http://www.w3.org/ns/prov#alternateOf + is alternate of relates two specialized instances. + two weather forecasts for the city of London produced at different times or by different organizations (etc) are alternates of each other, and instances of / specializations of forecasts for the city of London. - + is mutual capability of - a is mutual capability of b if and only if the realization of capability a necessarily causes the realization of capability b. + a is mutual capability of b if and only if the realization of capability a necessarily causes the realization of capability b. - + regulates - x regulates y if and only if x is a process and y is either a process or a quality, and the progression of x exerts an effect on the frequency, rate or extent of y + x regulates y if and only if x is a process and y is either a process or a quality, and the progression of x exerts an effect on the frequency, rate or extent of y - + @@ -1762,7 +1762,7 @@ is regulated by - + @@ -1771,21 +1771,21 @@ - + is result of - + affects - + @@ -1793,79 +1793,79 @@ is affected by - + is identical to - is identical to is a relation between two objects that are conceptually the same notwithstanding provenance or other non-intrinsic attributes. + is identical to is a relation between two objects that are conceptually the same notwithstanding provenance or other non-intrinsic attributes. - + has data item - core - has data item is a relation between a dataset and any described / referrenced entity. + core + has data item is a relation between a dataset and any described / referrenced entity. - + is data item in - 'is data item in' is a relation between an entity that is described or referenced in a dataset. - core + core + 'is data item in' is a relation between an entity that is described or referenced in a dataset. - + has phenotype - has phenotype is a relation between an object and an observable/measurable characteristic. + has phenotype is a relation between an object and an observable/measurable characteristic. - + is phenotype of - is phenotype of is a relation between an observable/measurable characteristic and an object. + is phenotype of is a relation between an observable/measurable characteristic and an object. - + encodes - A relation between two objects, in which the first object contains information that is used to produce the second object. - an open reading frame encodes a protein (it contains information that specifies the amino acid composition and topology) + A relation between two objects, in which the first object contains information that is used to produce the second object. + an open reading frame encodes a protein (it contains information that specifies the amino acid composition and topology) - + is encoded by - A relation between two objects, in which the first object is produced from the information contained in the second object. + A relation between two objects, in which the first object is produced from the information contained in the second object. - + is transcribed into - DNA is transcribed into RNA - a relation between two information content entities in which one is transcribed into (an exact or similar kind) another through some process. + DNA is transcribed into RNA + a relation between two information content entities in which one is transcribed into (an exact or similar kind) another through some process. - + @@ -1873,16 +1873,16 @@ is transcribed from - + is translated into - RNA is translated into Protein - a relation between two information content entities in which one is translated into (a completely different kind of entity) another through some process. + RNA is translated into Protein + a relation between two information content entities in which one is translated into (a completely different kind of entity) another through some process. - + @@ -1890,34 +1890,34 @@ is translated from - + is homologous to - a relation between two entities which indicates their common ancestry. + a relation between two entities which indicates their common ancestry. - + has value - nlp - relations - core - sadi - A relation between a informational entity and its actual value (numeric, date, text, etc). - + nlp + core + relations + sadi + A relation between a informational entity and its actual value (numeric, date, text, etc). + - sio-v1.0.16-relations-subset.owl - - + sio-v1.17.0-relations-subset.owl + + \ No newline at end of file diff --git a/ontology/sio/release/sio-subset-sadi.owl b/ontology/sio/release/sio-subset-sadi.owl index d46fea1b..1c3a1f20 100644 --- a/ontology/sio/release/sio-subset-sadi.owl +++ b/ontology/sio/release/sio-subset-sadi.owl @@ -11,18 +11,18 @@ hexokinase is an agent in the conversion of glucose to glucose-6-phosphate is agent in is a relation between an entity and a process, where the entity is present throughout the process, no permanent material change occurs, and is a causal participant in the process. sadi - + has agent - OBO_REL:has_agent core sadi + OBO_REL:has_agent has agent is a relation between a process and an entity, where the entity is present throughout the process and is a causal participant in the process. - + @@ -32,7 +32,7 @@ sadi has output is a relation between an process and an entity, where the entity is present at the end of the process. - + @@ -41,7 +41,7 @@ core sadi has input is a relation between a process and an entity, where the entity is present at the beginning of the process. - + @@ -51,7 +51,7 @@ is input in is a relation between an entity and a process, where the entity is present at the beginning of the process. sadi - + @@ -60,7 +60,7 @@ glucose-6-phosphate and ADP are outputs in the hexokinase-mediated conversion of glucose to glucose-6-phosphate. is output of is a relation between an entity and a process, where the entity is present at the end of the process. sadi - + @@ -70,7 +70,7 @@ is product of is a relation between an entity and a process, where the entity is present at the end of the process as a result of a transformation in the process target. sadi - + @@ -78,7 +78,7 @@ has product has product is a relation between an process and an entity, where a new entity exists at the end of the process. sadi - + @@ -87,7 +87,7 @@ has parameter is a relation between a process and an information content entity which modulates the behaviour of some participant. sadi - + @@ -95,11 +95,11 @@ has value nlp - relations core + relations sadi A relation between a informational entity and its actual value (numeric, date, text, etc). - + @@ -108,7 +108,7 @@ http://en.wikipedia.org/wiki/SADI a SADI semantic web service is a semantic web service that follows the SADI specification sadi - + @@ -116,13 +116,13 @@ SADI web service invocation A SADI web service invocation is the excution of a SADI web service. sadi - + - sio-v1.0.16-sadi-subset.owl - - + sio-v1.17.0-sadi-subset.owl + + \ No newline at end of file