diff --git a/dsms/core/dsms.py b/dsms/core/dsms.py index e03047c..68511e2 100644 --- a/dsms/core/dsms.py +++ b/dsms/core/dsms.py @@ -84,9 +84,10 @@ def search( ktypes: "Optional[List[KType]]" = [], annotations: "Optional[List[str]]" = [], limit: int = 10, + allow_fuzzy: "Optional[bool]" = True, ) -> "List[KItem]": """Search for KItems in the remote backend.""" - return _search(query, ktypes, annotations, limit) + return _search(query, ktypes, annotations, limit, allow_fuzzy) @property def sparql_interface(cls) -> SparqlInterface: diff --git a/dsms/knowledge/utils.py b/dsms/knowledge/utils.py index 9d8c968..c873774 100644 --- a/dsms/knowledge/utils.py +++ b/dsms/knowledge/utils.py @@ -291,7 +291,8 @@ def _search( query: Optional[str] = None, ktypes: "Optional[List[KType]]" = [], annotations: "Optional[List[str]]" = [], - limit: int = 10, + limit: "Optional[int]" = 10, + allow_fuzzy: "Optional[bool]" = True, ) -> "List[KItem]": """Search for KItems in the remote backend""" from dsms import KItem # isort:skip @@ -303,7 +304,10 @@ def _search( "limit": limit, } response = _perform_request( - "api/knowledge/kitems/search", "post", json=payload + "api/knowledge/kitems/search", + "post", + json=payload, + params={"allow_fuzzy": allow_fuzzy}, ) if not response.ok: raise RuntimeError( diff --git a/examples/basic_usage.ipynb b/examples/basic_usage.ipynb index f88caa3..1c660c8 100644 --- a/examples/basic_usage.ipynb +++ b/examples/basic_usage.ipynb @@ -422,17 +422,114 @@ " 'default': None,\n", " 'description': 'KType of the '\n", " 'KItem'},\n", - " 'ktype_id': {'anyOf': [{'description': 'Generic '\n", - " 'enumeration.\\n'\n", + " 'ktype_id': {'anyOf': [{'description': 'Create '\n", + " 'a '\n", + " 'collection '\n", + " 'of '\n", + " 'name/value '\n", + " 'pairs.\\n'\n", " '\\n'\n", - " 'Derive '\n", - " 'from '\n", - " 'this '\n", + " 'Example '\n", + " 'enumeration:\\n'\n", + " '\\n'\n", + " '>>> '\n", " 'class '\n", + " 'Color(Enum):\\n'\n", + " '... '\n", + " 'RED '\n", + " '= '\n", + " '1\\n'\n", + " '... '\n", + " 'BLUE '\n", + " '= '\n", + " '2\\n'\n", + " '... '\n", + " 'GREEN '\n", + " '= '\n", + " '3\\n'\n", + " '\\n'\n", + " 'Access '\n", + " 'them '\n", + " 'by:\\n'\n", + " '\\n'\n", + " '- '\n", + " 'attribute '\n", + " 'access:\\n'\n", + " '\\n'\n", + " ' '\n", + " '>>> '\n", + " 'Color.RED\\n'\n", + " ' '\n", + " '\\n'\n", + " '\\n'\n", + " '- '\n", + " 'value '\n", + " 'lookup:\\n'\n", + " '\\n'\n", + " ' '\n", + " '>>> '\n", + " 'Color(1)\\n'\n", + " ' '\n", + " '\\n'\n", + " '\\n'\n", + " '- '\n", + " 'name '\n", + " 'lookup:\\n'\n", + " '\\n'\n", + " ' '\n", + " '>>> '\n", + " \"Color['RED']\\n\"\n", + " ' '\n", + " '\\n'\n", + " '\\n'\n", + " 'Enumerations '\n", + " 'can '\n", + " 'be '\n", + " 'iterated '\n", + " 'over, '\n", + " 'and '\n", + " 'know '\n", + " 'how '\n", + " 'many '\n", + " 'members '\n", + " 'they '\n", + " 'have:\\n'\n", + " '\\n'\n", + " '>>> '\n", + " 'len(Color)\\n'\n", + " '3\\n'\n", + " '\\n'\n", + " '>>> '\n", + " 'list(Color)\\n'\n", + " '[, '\n", + " ', '\n", + " ']\\n'\n", + " '\\n'\n", + " 'Methods '\n", + " 'can '\n", + " 'be '\n", + " 'added '\n", " 'to '\n", - " 'define '\n", - " 'new '\n", - " 'enumerations.',\n", + " 'enumerations, '\n", + " 'and '\n", + " 'members '\n", + " 'can '\n", + " 'have '\n", + " 'their '\n", + " 'own\\n'\n", + " 'attributes '\n", + " '-- '\n", + " 'see '\n", + " 'the '\n", + " 'documentation '\n", + " 'for '\n", + " 'details.',\n", " 'enum': [],\n", " 'title': 'Enum'},\n", " {'type': 'string'}],\n", @@ -587,7 +684,7 @@ "name": "stderr", "output_type": "stream", "text": [ - "c:\\Anaconda3\\lib\\site-packages\\pydantic\\json_schema.py:2080: PydanticJsonSchemaWarning: Default value is not JSON serializable; excluding default from JSON schema [non-serializable-default]\n", + "c:\\Anaconda3\\envs\\sdk\\Lib\\site-packages\\pydantic\\json_schema.py:2099: PydanticJsonSchemaWarning: Default value is not JSON serializable; excluding default from JSON schema [non-serializable-default]\n", " warnings.warn(message, PydanticJsonSchemaWarning)\n" ] } @@ -615,7 +712,9 @@ "KTypes.Organization\n", "KTypes.Expert\n", "KTypes.App\n", - "KTypes.DatasetCatalog\n" + "KTypes.DatasetCatalog\n", + "KTypes.TestSeries\n", + "KTypes.TestMatthias\n" ] } ], @@ -650,7 +749,7 @@ "\n", "\tname = foo123, \n", "\n", - "\tid = 1b1ba7a5-8792-4b95-9d39-050a42fafdcc, \n", + "\tid = 7683a8c0-908e-4528-82ce-0b6b7140f7ab, \n", "\n", "\tktype_id = KTypes.DatasetCatalog, \n", "\n", @@ -736,7 +835,7 @@ "\n", "\tname = foo123, \n", "\n", - "\tid = 1b1ba7a5-8792-4b95-9d39-050a42fafdcc, \n", + "\tid = 7683a8c0-908e-4528-82ce-0b6b7140f7ab, \n", "\n", "\tktype_id = KTypes.DatasetCatalog, \n", "\n", @@ -800,7 +899,7 @@ " \n", " \tname = foo123, \n", " \n", - " \tid = 1b1ba7a5-8792-4b95-9d39-050a42fafdcc, \n", + " \tid = 7683a8c0-908e-4528-82ce-0b6b7140f7ab, \n", " \n", " \tktype_id = dataset-catalog, \n", " \n", @@ -822,9 +921,9 @@ " \n", " \tcontacts = [], \n", " \n", - " \tcreated_at = 2024-02-23 15:00:09.605454, \n", + " \tcreated_at = 2024-02-27 15:40:43.372811, \n", " \n", - " \tupdated_at = 2024-02-23 15:00:09.605454, \n", + " \tupdated_at = 2024-02-27 15:40:43.372811, \n", " \n", " \texternal_links = [], \n", " \n", @@ -952,7 +1051,17 @@ "\n", "## Usage\n", "\n", - "The DSMS-SDK package is a library for managing Knowledge Items (KItems) with a focus on simplicity and efficiency.\n", + "The SDK provides a general Python interface to a remote DSMS deployment, allowing users to access, store and link data in a DSMS instance easily and safely. The package provides the following main capabilities:\n", + "\n", + "- Managing Knowledge-Items (KItems), which are data instances of an explicitly defined semantic class type (KType)\n", + " - Creating, updating and deleting meta data and properties, e.g. date, operator, material response data for a conducted tensile test\n", + " - Administrating authorship, contact information and supplementary information upon making changes or adding KItems\n", + " - Semantic annotation of KItems\n", + "- Conduct simple free-text searches within the DSMS instance including filters (e.g. limiting the search for certain materials) as well as a more experts-aware SPARQL interface\n", + "- Linking KItems to other KItems\n", + "- Linking Apps to KItems, triggererd, for example, during a file upload\n", + "- Performing simple file upload and download using attachments to KItems\n", + "- Export of a knowledge (sub) graph as common serializations (.ttl, .json)\n", "\n", "For the basic usage, please have a look on the Jupyter Notebook under `examples/basic_usage.ipynb`. This tutorial provides a basic overview of using the dsms package to interact with Knowledge Items.\n", "\n", @@ -1056,7 +1165,7 @@ "\n", "\tname = foobar, \n", "\n", - "\tid = 1b1ba7a5-8792-4b95-9d39-050a42fafdcc, \n", + "\tid = 7683a8c0-908e-4528-82ce-0b6b7140f7ab, \n", "\n", "\tktype_id = KTypes.DatasetCatalog, \n", "\n", @@ -1257,7 +1366,7 @@ " \n", " \tname = foo 1, \n", " \n", - " \tid = 8cbefd20-b301-4426-b3c2-f69a658a247f, \n", + " \tid = d475776e-5649-4add-b5f9-08baf1d4f43b, \n", " \n", " \tktype_id = dataset-catalog, \n", " \n", @@ -1268,7 +1377,7 @@ " \tattachments = [], \n", " \n", " \tlinked_kitems = [\n", - " \t\tLinkedKItem(id=df330e4f-b7a1-4907-9bc6-8c0124998475, source_id=8cbefd20-b301-4426-b3c2-f69a658a247f)\n", + " \t\tLinkedKItem(id=7664eeae-b283-40ce-aa26-607b871ccd2a, source_id=d475776e-5649-4add-b5f9-08baf1d4f43b)\n", " \t], \n", " \n", " \taffiliations = [], \n", @@ -1281,9 +1390,9 @@ " \n", " \tcontacts = [], \n", " \n", - " \tcreated_at = 2024-02-23 15:00:22.963418, \n", + " \tcreated_at = 2024-02-27 15:41:24.671471, \n", " \n", - " \tupdated_at = 2024-02-23 15:00:22.963418, \n", + " \tupdated_at = 2024-02-27 15:41:24.671471, \n", " \n", " \texternal_links = [], \n", " \n", @@ -1297,37 +1406,85 @@ " ),\n", " KItem(\n", " \n", - " \tname = foo 2, \n", + " \tname = material constants, \n", " \n", - " \tid = df330e4f-b7a1-4907-9bc6-8c0124998475, \n", + " \tid = ea0bb87b-3a26-48be-84e1-bec9b99a1204, \n", " \n", - " \tktype_id = organization, \n", + " \tktype_id = dataset-catalog, \n", " \n", - " \tslug = foo2, \n", + " \tslug = material_constants, \n", " \n", " \tannotations = [\n", - " \t\tAnnotation(iri=www.example.org/foo, name=foo, namespace=www.example.org)\n", + " \t\tAnnotation(iri=https://w3id.org/steel/ProcessOntology/MaterialCard, name=MaterialCard, namespace=https://w3id.org/steel/ProcessOntology)\n", " \t], \n", " \n", " \tattachments = [], \n", " \n", " \tlinked_kitems = [\n", - " \t\tLinkedKItem(id=8cbefd20-b301-4426-b3c2-f69a658a247f, source_id=df330e4f-b7a1-4907-9bc6-8c0124998475)\n", + " \t\tLinkedKItem(id=72bc54cf-8138-4ac3-8586-14afe5bc6b7f, source_id=ea0bb87b-3a26-48be-84e1-bec9b99a1204), \n", + " \t\tLinkedKItem(id=253d69c1-606c-4721-832e-1caed961e8ef, source_id=ea0bb87b-3a26-48be-84e1-bec9b99a1204)\n", " \t], \n", " \n", " \taffiliations = [], \n", " \n", " \tauthors = [\n", - " \t\tAuthor(user_id=4440f8c8-f443-4114-a7a7-d8e2a6b5d776)\n", + " \t\tAuthor(user_id=8f40087b-16d6-49ba-a8ac-2bd70b8a2308)\n", + " \t], \n", + " \n", + " \tavatar_exists = False, \n", + " \n", + " \tcontacts = [], \n", + " \n", + " \tcreated_at = 2024-02-27 05:31:47.433035, \n", + " \n", + " \tupdated_at = 2024-02-27 05:31:47.433035, \n", + " \n", + " \texternal_links = [], \n", + " \n", + " \tkitem_apps = [], \n", + " \n", + " \tsummary = None, \n", + " \n", + " \tuser_groups = [], \n", + " \n", + " \tcustom_properties = CustomProperties(content={'material constants': {'C11': 226000.0, 'C12': 140000.0, 'C44': 116000.0, 'shear_rate_ref': 0.001, 'rate_sens': 0.0125, 'tau0': 62.1930648, 'tau1': 48.1881715, 'theta0': 356.842243, 'theta1': 37.4360252, 'q1': 1.4, 'q2': 1.4}})\n", + " ),\n", + " KItem(\n", + " \n", + " \tname = orientations, \n", + " \n", + " \tid = 5386bf18-533a-4976-8481-d54638f07a91, \n", + " \n", + " \tktype_id = dataset-catalog, \n", + " \n", + " \tslug = orientations, \n", + " \n", + " \tannotations = [\n", + " \t\tAnnotation(iri=https://w3id.org/steel/ProcessOntology/GrainOrientation, name=GrainOrientation, namespace=https://w3id.org/steel/ProcessOntology)\n", + " \t], \n", + " \n", + " \tattachments = [\n", + " \t\tAttachment(name=11533_FS_Scan1_830x830_100x.ang)\n", + " \t], \n", + " \n", + " \tlinked_kitems = [\n", + " \t\tLinkedKItem(id=72bc54cf-8138-4ac3-8586-14afe5bc6b7f, source_id=5386bf18-533a-4976-8481-d54638f07a91), \n", + " \t\tLinkedKItem(id=253d69c1-606c-4721-832e-1caed961e8ef, source_id=5386bf18-533a-4976-8481-d54638f07a91)\n", + " \t], \n", + " \n", + " \taffiliations = [], \n", + " \n", + " \tauthors = [\n", + " \t\tAuthor(user_id=8f40087b-16d6-49ba-a8ac-2bd70b8a2308)\n", " \t], \n", " \n", " \tavatar_exists = False, \n", " \n", " \tcontacts = [], \n", " \n", - " \tcreated_at = 2024-02-23 15:00:23.464588, \n", + " \tcreated_at = 2024-02-27 05:31:47.498209, \n", " \n", - " \tupdated_at = 2024-02-23 15:00:23.464588, \n", + " \tupdated_at = 2024-02-27 05:31:47.498209, \n", " \n", " \texternal_links = [], \n", " \n", @@ -1341,33 +1498,39 @@ " ),\n", " KItem(\n", " \n", - " \tname = foo 3, \n", + " \tname = rve_1000_grains_geofile, \n", " \n", - " \tid = d0c3ae9a-dace-41b3-be6d-457f7c119ed7, \n", + " \tid = 13e57827-c5fe-413e-90dd-bb95ec5c1d3a, \n", " \n", - " \tktype_id = organization, \n", + " \tktype_id = dataset-catalog, \n", " \n", - " \tslug = foo3, \n", + " \tslug = rve_1000_grains_geofile, \n", " \n", - " \tannotations = [], \n", + " \tannotations = [\n", + " \t\tAnnotation(iri=https://w3id.org/steel/ProcessOntology/Geometry, name=Geometry, namespace=https://w3id.org/steel/ProcessOntology)\n", + " \t], \n", " \n", - " \tattachments = [], \n", + " \tattachments = [\n", + " \t\tAttachment(name=mesh_40x40x40_grains_1000_aspect_ratio_1_6.geo)\n", + " \t], \n", " \n", - " \tlinked_kitems = [], \n", + " \tlinked_kitems = [\n", + " \t\tLinkedKItem(id=253d69c1-606c-4721-832e-1caed961e8ef, source_id=13e57827-c5fe-413e-90dd-bb95ec5c1d3a)\n", + " \t], \n", " \n", " \taffiliations = [], \n", " \n", " \tauthors = [\n", - " \t\tAuthor(user_id=4440f8c8-f443-4114-a7a7-d8e2a6b5d776)\n", + " \t\tAuthor(user_id=8f40087b-16d6-49ba-a8ac-2bd70b8a2308)\n", " \t], \n", " \n", " \tavatar_exists = False, \n", " \n", " \tcontacts = [], \n", " \n", - " \tcreated_at = 2024-02-23 15:00:23.922250, \n", + " \tcreated_at = 2024-02-27 05:31:47.588776, \n", " \n", - " \tupdated_at = 2024-02-23 15:00:23.922250, \n", + " \tupdated_at = 2024-02-27 05:31:47.588776, \n", " \n", " \texternal_links = [], \n", " \n", @@ -1381,35 +1544,39 @@ " ),\n", " KItem(\n", " \n", - " \tname = foo 4, \n", + " \tname = rve_1000_grains_nodegeofile, \n", " \n", - " \tid = 136d5a82-f404-46a8-8aa7-87f6b926c161, \n", + " \tid = 198bdb22-201e-4872-bf8e-36180cd66f3a, \n", " \n", - " \tktype_id = organization, \n", + " \tktype_id = dataset-catalog, \n", " \n", - " \tslug = foo4, \n", + " \tslug = rve_1000_grains_nodegeofile, \n", " \n", " \tannotations = [\n", - " \t\tAnnotation(iri=www.example.org/bar, name=bar, namespace=https://www.example.org)\n", + " \t\tAnnotation(iri=https://w3id.org/steel/ProcessOntology/Geometry, name=Geometry, namespace=https://w3id.org/steel/ProcessOntology)\n", " \t], \n", " \n", - " \tattachments = [], \n", + " \tattachments = [\n", + " \t\tAttachment(name=mesh_40x40x40_grains_1000_aspect_ratio_1_6_node.geo)\n", + " \t], \n", " \n", - " \tlinked_kitems = [], \n", + " \tlinked_kitems = [\n", + " \t\tLinkedKItem(id=253d69c1-606c-4721-832e-1caed961e8ef, source_id=198bdb22-201e-4872-bf8e-36180cd66f3a)\n", + " \t], \n", " \n", " \taffiliations = [], \n", " \n", " \tauthors = [\n", - " \t\tAuthor(user_id=4440f8c8-f443-4114-a7a7-d8e2a6b5d776)\n", + " \t\tAuthor(user_id=8f40087b-16d6-49ba-a8ac-2bd70b8a2308)\n", " \t], \n", " \n", " \tavatar_exists = False, \n", " \n", " \tcontacts = [], \n", " \n", - " \tcreated_at = 2024-02-23 15:00:24.431748, \n", + " \tcreated_at = 2024-02-27 05:31:47.717656, \n", " \n", - " \tupdated_at = 2024-02-23 15:00:24.431748, \n", + " \tupdated_at = 2024-02-27 05:31:47.717656, \n", " \n", " \texternal_links = [], \n", " \n", @@ -1420,6 +1587,148 @@ " \tuser_groups = [], \n", " \n", " \tcustom_properties = CustomProperties(content={})\n", + " ),\n", + " KItem(\n", + " \n", + " \tname = Taylor model results for tensile test, \n", + " \n", + " \tid = 72bc54cf-8138-4ac3-8586-14afe5bc6b7f, \n", + " \n", + " \tktype_id = dataset-catalog, \n", + " \n", + " \tslug = taylor_model_results, \n", + " \n", + " \tannotations = [\n", + " \t\tAnnotation(iri=https://w3id.org/steel/ProcessOntology/Simulation, name=Simulation, namespace=https://w3id.org/steel/ProcessOntology), \n", + " \t\tAnnotation(iri=https://w3id.org/steel/ProcessOntology/Stress, name=Stress, namespace=https://w3id.org/steel/ProcessOntology), \n", + " \t\tAnnotation(iri=https://w3id.org/steel/ProcessOntology/Strain, name=Strain, namespace=https://w3id.org/steel/ProcessOntology)\n", + " \t], \n", + " \n", + " \tattachments = [], \n", + " \n", + " \tlinked_kitems = [\n", + " \t\tLinkedKItem(id=ea0bb87b-3a26-48be-84e1-bec9b99a1204, source_id=72bc54cf-8138-4ac3-8586-14afe5bc6b7f), \n", + " \t\tLinkedKItem(id=5386bf18-533a-4976-8481-d54638f07a91, source_id=72bc54cf-8138-4ac3-8586-14afe5bc6b7f), \n", + " \t\tLinkedKItem(id=9763b163-df73-4144-b912-390e50452816, source_id=72bc54cf-8138-4ac3-8586-14afe5bc6b7f)\n", + " \t], \n", + " \n", + " \taffiliations = [], \n", + " \n", + " \tauthors = [\n", + " \t\tAuthor(user_id=8f40087b-16d6-49ba-a8ac-2bd70b8a2308)\n", + " \t], \n", + " \n", + " \tavatar_exists = False, \n", + " \n", + " \tcontacts = [], \n", + " \n", + " \tcreated_at = 2024-02-27 05:38:45.142641, \n", + " \n", + " \tupdated_at = 2024-02-27 05:38:45.142641, \n", + " \n", + " \texternal_links = [], \n", + " \n", + " \tkitem_apps = [], \n", + " \n", + " \tsummary = None, \n", + " \n", + " \tuser_groups = [], \n", + " \n", + " \tcustom_properties = CustomProperties(content={'results': [{'results dir 1': {'stress': [21.58054614791612, 43.170042863376196, 64.76849270605567, 86.37589823649873, 107.99226194689915, 129.5301874671413, 146.71707608601486, 157.9177359874374, 165.89505215689007, 171.9456721642459, 176.6052774138756, 180.3379286066158, 183.44638558913394, 185.7957299465629, 187.2972648831072, 188.3572114403435, 189.20645939640806, 189.93606355194825, 190.58450964779726, 191.1720687252719, 191.71662405645583, 192.23168301753358, 192.72550231191602, 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\t\tAuthor(user_id=83778ed4-2d3d-4fae-a1f0-35f59bb89799)\n", + " \t], \n", + " \n", + " \tavatar_exists = False, \n", + " \n", + " \tcontacts = [], \n", + " \n", + " \tcreated_at = 2024-02-27 11:00:42.244244, \n", + " \n", + " \tupdated_at = 2024-02-27 11:00:42.244244, \n", + " \n", + " \texternal_links = [], \n", + " \n", + " \tkitem_apps = [\n", + " \t\tApp(kitem_app_id=1, executable=deepu_test/csv_tensile_test/csv_tensile_test.ipynb, title=xc, description=cxc, tags=None, additional_properties=triggeredUponUpload=False triggeredUponUploadFileExtensions=None)\n", + " \t], \n", + " \n", + " \tsummary = None, \n", + " \n", + " \tuser_groups = [], \n", + " \n", + " \tcustom_properties = None\n", " )]" ] }, @@ -1451,7 +1760,7 @@ " \n", " \tname = foo 1, \n", " \n", - " \tid = 8cbefd20-b301-4426-b3c2-f69a658a247f, \n", + " \tid = d475776e-5649-4add-b5f9-08baf1d4f43b, \n", " \n", " \tktype_id = dataset-catalog, \n", " \n", @@ -1462,7 +1771,7 @@ " \tattachments = [], \n", " \n", " \tlinked_kitems = [\n", - " \t\tLinkedKItem(id=df330e4f-b7a1-4907-9bc6-8c0124998475, source_id=8cbefd20-b301-4426-b3c2-f69a658a247f)\n", + " \t\tLinkedKItem(id=7664eeae-b283-40ce-aa26-607b871ccd2a, source_id=d475776e-5649-4add-b5f9-08baf1d4f43b)\n", " \t], \n", " \n", " \taffiliations = [], \n", @@ -1475,9 +1784,9 @@ " \n", " \tcontacts = [], \n", " \n", - " \tcreated_at = 2024-02-23 15:00:22.963418, \n", + " \tcreated_at = 2024-02-27 15:41:24.671471, \n", " \n", - " \tupdated_at = 2024-02-23 15:00:22.963418, \n", + " \tupdated_at = 2024-02-27 15:41:24.671471, \n", " \n", " \texternal_links = [], \n", " \n", @@ -1493,7 +1802,7 @@ " \n", " \tname = foo 2, \n", " \n", - " \tid = df330e4f-b7a1-4907-9bc6-8c0124998475, \n", + " \tid = 7664eeae-b283-40ce-aa26-607b871ccd2a, \n", " \n", " \tktype_id = organization, \n", " \n", @@ -1506,7 +1815,7 @@ " \tattachments = [], \n", " \n", " \tlinked_kitems = [\n", - " \t\tLinkedKItem(id=8cbefd20-b301-4426-b3c2-f69a658a247f, source_id=df330e4f-b7a1-4907-9bc6-8c0124998475)\n", + " \t\tLinkedKItem(id=d475776e-5649-4add-b5f9-08baf1d4f43b, source_id=7664eeae-b283-40ce-aa26-607b871ccd2a)\n", " \t], \n", " \n", " \taffiliations = [], \n", @@ -1519,9 +1828,9 @@ " \n", " \tcontacts = [], \n", " \n", - " \tcreated_at = 2024-02-23 15:00:23.464588, \n", + " \tcreated_at = 2024-02-27 15:41:26.180197, \n", " \n", - " \tupdated_at = 2024-02-23 15:00:23.464588, \n", + " \tupdated_at = 2024-02-27 15:41:26.180197, \n", " \n", " \texternal_links = [], \n", " \n", @@ -1537,7 +1846,7 @@ " \n", " \tname = foo 3, \n", " \n", - " \tid = d0c3ae9a-dace-41b3-be6d-457f7c119ed7, \n", + " \tid = ece40fe8-d25d-4dae-ab80-9cfcb9d354c5, \n", " \n", " \tktype_id = organization, \n", " \n", @@ -1559,9 +1868,9 @@ " \n", " \tcontacts = [], \n", " \n", - " \tcreated_at = 2024-02-23 15:00:23.922250, \n", + " \tcreated_at = 2024-02-27 15:41:27.479204, \n", " \n", - " \tupdated_at = 2024-02-23 15:00:23.922250, \n", + " \tupdated_at = 2024-02-27 15:41:27.479204, \n", " \n", " \texternal_links = [], \n", " \n", @@ -1577,7 +1886,7 @@ " \n", " \tname = foo 4, \n", " \n", - " \tid = 136d5a82-f404-46a8-8aa7-87f6b926c161, \n", + " \tid = 2462e5a6-c1f5-4ddc-bca4-444716927989, \n", " \n", " \tktype_id = organization, \n", " \n", @@ -1601,9 +1910,9 @@ " \n", " \tcontacts = [], \n", " \n", - " \tcreated_at = 2024-02-23 15:00:24.431748, \n", + " \tcreated_at = 2024-02-27 15:41:28.730047, \n", " \n", - " \tupdated_at = 2024-02-23 15:00:24.431748, \n", + " \tupdated_at = 2024-02-27 15:41:28.730047, \n", " \n", " \texternal_links = [], \n", " \n", @@ -1614,64 +1923,88 @@ " \tuser_groups = [], \n", " \n", " \tcustom_properties = CustomProperties(content={})\n", - " )]" - ] - }, - "execution_count": 22, - "metadata": {}, - "output_type": "execute_result" - } - ], - "source": [ - "dsms.search(ktypes=[dsms.ktypes.Organization, dsms.ktypes.DatasetCatalog])" - ] - }, - { - "cell_type": "markdown", - "metadata": {}, - "source": [ - "... or for all of type `DatasetCatalog` with `foo` in the name:" - ] - }, - { - "cell_type": "code", - "execution_count": 23, - "metadata": {}, - "outputs": [ - { - "data": { - "text/plain": [ - "[KItem(\n", + " ),\n", + " KItem(\n", " \n", - " \tname = foo 1, \n", + " \tname = material constants, \n", " \n", - " \tid = 8cbefd20-b301-4426-b3c2-f69a658a247f, \n", + " \tid = ea0bb87b-3a26-48be-84e1-bec9b99a1204, \n", " \n", " \tktype_id = dataset-catalog, \n", " \n", - " \tslug = foo1, \n", + " \tslug = material_constants, \n", " \n", - " \tannotations = [], \n", + " \tannotations = [\n", + " \t\tAnnotation(iri=https://w3id.org/steel/ProcessOntology/MaterialCard, name=MaterialCard, namespace=https://w3id.org/steel/ProcessOntology)\n", + " \t], \n", " \n", " \tattachments = [], \n", " \n", " \tlinked_kitems = [\n", - " \t\tLinkedKItem(id=df330e4f-b7a1-4907-9bc6-8c0124998475, source_id=8cbefd20-b301-4426-b3c2-f69a658a247f)\n", + " \t\tLinkedKItem(id=72bc54cf-8138-4ac3-8586-14afe5bc6b7f, source_id=ea0bb87b-3a26-48be-84e1-bec9b99a1204), \n", + " \t\tLinkedKItem(id=253d69c1-606c-4721-832e-1caed961e8ef, source_id=ea0bb87b-3a26-48be-84e1-bec9b99a1204)\n", " \t], \n", " \n", " \taffiliations = [], \n", " \n", " \tauthors = [\n", - " \t\tAuthor(user_id=4440f8c8-f443-4114-a7a7-d8e2a6b5d776)\n", + " \t\tAuthor(user_id=8f40087b-16d6-49ba-a8ac-2bd70b8a2308)\n", " \t], \n", " \n", " \tavatar_exists = False, \n", " \n", " \tcontacts = [], \n", " \n", - " \tcreated_at = 2024-02-23 15:00:22.963418, \n", + " \tcreated_at = 2024-02-27 05:31:47.433035, \n", " \n", - " \tupdated_at = 2024-02-23 15:00:22.963418, \n", + " \tupdated_at = 2024-02-27 05:31:47.433035, \n", + " \n", + " \texternal_links = [], \n", + " \n", + " \tkitem_apps = [], \n", + " \n", + " \tsummary = None, \n", + " \n", + " \tuser_groups = [], \n", + " \n", + " \tcustom_properties = CustomProperties(content={'material constants': {'C11': 226000.0, 'C12': 140000.0, 'C44': 116000.0, 'shear_rate_ref': 0.001, 'rate_sens': 0.0125, 'tau0': 62.1930648, 'tau1': 48.1881715, 'theta0': 356.842243, 'theta1': 37.4360252, 'q1': 1.4, 'q2': 1.4}})\n", + " ),\n", + " KItem(\n", + " \n", + " \tname = orientations, \n", + " \n", + " \tid = 5386bf18-533a-4976-8481-d54638f07a91, \n", + " \n", + " \tktype_id = dataset-catalog, \n", + " \n", + " \tslug = orientations, \n", + " \n", + " \tannotations = [\n", + " \t\tAnnotation(iri=https://w3id.org/steel/ProcessOntology/GrainOrientation, name=GrainOrientation, namespace=https://w3id.org/steel/ProcessOntology)\n", + " \t], \n", + " \n", + " \tattachments = [\n", + " \t\tAttachment(name=11533_FS_Scan1_830x830_100x.ang)\n", + " \t], \n", + " \n", + " \tlinked_kitems = [\n", + " \t\tLinkedKItem(id=72bc54cf-8138-4ac3-8586-14afe5bc6b7f, source_id=5386bf18-533a-4976-8481-d54638f07a91), \n", + " \t\tLinkedKItem(id=253d69c1-606c-4721-832e-1caed961e8ef, source_id=5386bf18-533a-4976-8481-d54638f07a91)\n", + " \t], \n", + " \n", + " \taffiliations = [], \n", + " \n", + " \tauthors = [\n", + " \t\tAuthor(user_id=8f40087b-16d6-49ba-a8ac-2bd70b8a2308)\n", + " \t], \n", + " \n", + " \tavatar_exists = False, \n", + " \n", + " \tcontacts = [], \n", + " \n", + " \tcreated_at = 2024-02-27 05:31:47.498209, \n", + " \n", + " \tupdated_at = 2024-02-27 05:31:47.498209, \n", " \n", " \texternal_links = [], \n", " \n", @@ -1685,37 +2018,39 @@ " ),\n", " KItem(\n", " \n", - " \tname = foo 2, \n", + " \tname = rve_1000_grains_geofile, \n", " \n", - " \tid = df330e4f-b7a1-4907-9bc6-8c0124998475, \n", + " \tid = 13e57827-c5fe-413e-90dd-bb95ec5c1d3a, \n", " \n", - " \tktype_id = organization, \n", + " \tktype_id = dataset-catalog, \n", " \n", - " \tslug = foo2, \n", + " \tslug = rve_1000_grains_geofile, \n", " \n", " \tannotations = [\n", - " \t\tAnnotation(iri=www.example.org/foo, name=foo, namespace=www.example.org)\n", + " \t\tAnnotation(iri=https://w3id.org/steel/ProcessOntology/Geometry, name=Geometry, namespace=https://w3id.org/steel/ProcessOntology)\n", " \t], \n", " \n", - " \tattachments = [], \n", + " \tattachments = [\n", + " \t\tAttachment(name=mesh_40x40x40_grains_1000_aspect_ratio_1_6.geo)\n", + " \t], \n", " \n", " \tlinked_kitems = [\n", - " \t\tLinkedKItem(id=8cbefd20-b301-4426-b3c2-f69a658a247f, source_id=df330e4f-b7a1-4907-9bc6-8c0124998475)\n", + " \t\tLinkedKItem(id=253d69c1-606c-4721-832e-1caed961e8ef, source_id=13e57827-c5fe-413e-90dd-bb95ec5c1d3a)\n", " \t], \n", " \n", " \taffiliations = [], \n", " \n", " \tauthors = [\n", - " \t\tAuthor(user_id=4440f8c8-f443-4114-a7a7-d8e2a6b5d776)\n", + " \t\tAuthor(user_id=8f40087b-16d6-49ba-a8ac-2bd70b8a2308)\n", " \t], \n", " \n", " \tavatar_exists = False, \n", " \n", " \tcontacts = [], \n", " \n", - " \tcreated_at = 2024-02-23 15:00:23.464588, \n", + " \tcreated_at = 2024-02-27 05:31:47.588776, \n", " \n", - " \tupdated_at = 2024-02-23 15:00:23.464588, \n", + " \tupdated_at = 2024-02-27 05:31:47.588776, \n", " \n", " \texternal_links = [], \n", " \n", @@ -1729,33 +2064,39 @@ " ),\n", " KItem(\n", " \n", - " \tname = foo 3, \n", + " \tname = rve_1000_grains_nodegeofile, \n", " \n", - " \tid = d0c3ae9a-dace-41b3-be6d-457f7c119ed7, \n", + " \tid = 198bdb22-201e-4872-bf8e-36180cd66f3a, \n", " \n", - " \tktype_id = organization, \n", + " \tktype_id = dataset-catalog, \n", " \n", - " \tslug = foo3, \n", + " \tslug = rve_1000_grains_nodegeofile, \n", " \n", - " \tannotations = [], \n", + " \tannotations = [\n", + " \t\tAnnotation(iri=https://w3id.org/steel/ProcessOntology/Geometry, name=Geometry, namespace=https://w3id.org/steel/ProcessOntology)\n", + " \t], \n", " \n", - " \tattachments = [], \n", + " \tattachments = [\n", + " \t\tAttachment(name=mesh_40x40x40_grains_1000_aspect_ratio_1_6_node.geo)\n", + " \t], \n", " \n", - " \tlinked_kitems = [], \n", + " \tlinked_kitems = [\n", + " \t\tLinkedKItem(id=253d69c1-606c-4721-832e-1caed961e8ef, source_id=198bdb22-201e-4872-bf8e-36180cd66f3a)\n", + " \t], \n", " \n", " \taffiliations = [], \n", " \n", " \tauthors = [\n", - " \t\tAuthor(user_id=4440f8c8-f443-4114-a7a7-d8e2a6b5d776)\n", + " \t\tAuthor(user_id=8f40087b-16d6-49ba-a8ac-2bd70b8a2308)\n", " \t], \n", " \n", " \tavatar_exists = False, \n", " \n", " \tcontacts = [], \n", " \n", - " \tcreated_at = 2024-02-23 15:00:23.922250, \n", + " \tcreated_at = 2024-02-27 05:31:47.717656, \n", " \n", - " \tupdated_at = 2024-02-23 15:00:23.922250, \n", + " \tupdated_at = 2024-02-27 05:31:47.717656, \n", " \n", " \texternal_links = [], \n", " \n", @@ -1769,21 +2110,145 @@ " ),\n", " KItem(\n", " \n", - " \tname = foo 4, \n", + " \tname = Taylor model results for tensile test, \n", " \n", - " \tid = 136d5a82-f404-46a8-8aa7-87f6b926c161, \n", + " \tid = 72bc54cf-8138-4ac3-8586-14afe5bc6b7f, \n", " \n", - " \tktype_id = organization, \n", + " \tktype_id = dataset-catalog, \n", " \n", - " \tslug = foo4, \n", + " \tslug = taylor_model_results, \n", " \n", " \tannotations = [\n", - " \t\tAnnotation(iri=www.example.org/bar, name=bar, namespace=https://www.example.org)\n", + " \t\tAnnotation(iri=https://w3id.org/steel/ProcessOntology/Simulation, name=Simulation, namespace=https://w3id.org/steel/ProcessOntology), \n", + " \t\tAnnotation(iri=https://w3id.org/steel/ProcessOntology/Stress, name=Stress, namespace=https://w3id.org/steel/ProcessOntology), \n", + " \t\tAnnotation(iri=https://w3id.org/steel/ProcessOntology/Strain, name=Strain, namespace=https://w3id.org/steel/ProcessOntology)\n", " \t], \n", " \n", " \tattachments = [], \n", " \n", - " \tlinked_kitems = [], \n", + " \tlinked_kitems = [\n", + " \t\tLinkedKItem(id=ea0bb87b-3a26-48be-84e1-bec9b99a1204, source_id=72bc54cf-8138-4ac3-8586-14afe5bc6b7f), \n", + " \t\tLinkedKItem(id=5386bf18-533a-4976-8481-d54638f07a91, source_id=72bc54cf-8138-4ac3-8586-14afe5bc6b7f), \n", + " \t\tLinkedKItem(id=9763b163-df73-4144-b912-390e50452816, source_id=72bc54cf-8138-4ac3-8586-14afe5bc6b7f)\n", + " \t], \n", + " \n", + " \taffiliations = [], \n", + " \n", + " \tauthors = [\n", + " \t\tAuthor(user_id=8f40087b-16d6-49ba-a8ac-2bd70b8a2308)\n", + " \t], \n", + " \n", + " \tavatar_exists = False, \n", + " \n", + " \tcontacts = [], \n", + " \n", + " \tcreated_at = 2024-02-27 05:38:45.142641, \n", + " \n", + " \tupdated_at = 2024-02-27 05:38:45.142641, \n", + " \n", + " \texternal_links = [], \n", + " \n", + " \tkitem_apps = [], \n", + " \n", + " \tsummary = None, \n", + " \n", + " \tuser_groups = [], \n", + " \n", + " \tcustom_properties = CustomProperties(content={'results': [{'results dir 1': {'stress': [21.58054614791612, 43.170042863376196, 64.76849270605567, 86.37589823649873, 107.99226194689915, 129.5301874671413, 146.71707608601486, 157.9177359874374, 165.89505215689007, 171.9456721642459, 176.6052774138756, 180.3379286066158, 183.44638558913394, 185.7957299465629, 187.2972648831072, 188.3572114403435, 189.20645939640806, 189.93606355194825, 190.58450964779726, 191.1720687252719, 191.71662405645583, 192.23168301753358, 192.72550231191602, 193.2026675069929, 193.66572689695772, 194.1164959295725, 194.55661391473686, 194.9877354439753, 195.41142121346203, 195.8291013606934, 196.2419699190138, 196.65087692134742, 197.05632750364066, 197.4585984616272, 197.85791574678777, 198.25454829728844, 198.64876082969673, 199.04074310158808, 199.43060000563227, 199.81838405602613, 200.20414029004357, 200.58793696216682, 200.96986945860075, 201.35005544010693, 201.72863158745844, 202.10574402957488, 202.4815310147699, 202.85610719367205, 203.22955680985973, 203.6019364691637, 203.97328380656373, 204.34362715301558, 204.71299291079742, 205.0814097170014, 205.44890953861417, 205.81552628705907, 206.18129326087978, 206.54624071281683, 206.91039443090165, 207.27377570470006, 207.6364022311491, 207.99828905438739, 208.3594490774068, 208.71989332367008, 209.07963121107997, 209.43867091417854, 209.79701972606927, 210.15468420210752, 210.51166998686105, 210.867981559276, 211.22362226902146, 211.578594770187, 211.93290160863242, 212.2865456491889, 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\n", + " \n", + " \tid = d475776e-5649-4add-b5f9-08baf1d4f43b, \n", + " \n", + " \tktype_id = dataset-catalog, \n", + " \n", + " \tslug = foo1, \n", + " \n", + " \tannotations = [], \n", + " \n", + " \tattachments = [], \n", + " \n", + " \tlinked_kitems = [\n", + " \t\tLinkedKItem(id=7664eeae-b283-40ce-aa26-607b871ccd2a, source_id=d475776e-5649-4add-b5f9-08baf1d4f43b)\n", + " \t], \n", " \n", " \taffiliations = [], \n", " \n", @@ -1795,9 +2260,9 @@ " \n", " \tcontacts = [], \n", " \n", - " \tcreated_at = 2024-02-23 15:00:24.431748, \n", + " \tcreated_at = 2024-02-27 15:41:24.671471, \n", " \n", - " \tupdated_at = 2024-02-23 15:00:24.431748, \n", + " \tupdated_at = 2024-02-27 15:41:24.671471, \n", " \n", " \texternal_links = [], \n", " \n", @@ -1839,7 +2304,7 @@ " \n", " \tname = foo 2, \n", " \n", - " \tid = df330e4f-b7a1-4907-9bc6-8c0124998475, \n", + " \tid = 7664eeae-b283-40ce-aa26-607b871ccd2a, \n", " \n", " \tktype_id = organization, \n", " \n", @@ -1852,7 +2317,7 @@ " \tattachments = [], \n", " \n", " \tlinked_kitems = [\n", - " \t\tLinkedKItem(id=8cbefd20-b301-4426-b3c2-f69a658a247f, source_id=df330e4f-b7a1-4907-9bc6-8c0124998475)\n", + " \t\tLinkedKItem(id=d475776e-5649-4add-b5f9-08baf1d4f43b, source_id=7664eeae-b283-40ce-aa26-607b871ccd2a)\n", " \t], \n", " \n", " \taffiliations = [], \n", @@ -1865,9 +2330,9 @@ " \n", " \tcontacts = [], \n", " \n", - " \tcreated_at = 2024-02-23 15:00:23.464588, \n", + " \tcreated_at = 2024-02-27 15:41:26.180197, \n", " \n", - " \tupdated_at = 2024-02-23 15:00:23.464588, \n", + " \tupdated_at = 2024-02-27 15:41:26.180197, \n", " \n", " \texternal_links = [], \n", " \n", @@ -1881,22 +2346,62 @@ " ),\n", " KItem(\n", " \n", - " \tname = foo 1, \n", + " \tname = foo 3, \n", " \n", - " \tid = 8cbefd20-b301-4426-b3c2-f69a658a247f, \n", + " \tid = ece40fe8-d25d-4dae-ab80-9cfcb9d354c5, \n", " \n", - " \tktype_id = dataset-catalog, \n", + " \tktype_id = organization, \n", " \n", - " \tslug = foo1, \n", + " \tslug = foo3, \n", " \n", " \tannotations = [], \n", " \n", " \tattachments = [], \n", " \n", - " \tlinked_kitems = [\n", - " \t\tLinkedKItem(id=df330e4f-b7a1-4907-9bc6-8c0124998475, source_id=8cbefd20-b301-4426-b3c2-f69a658a247f)\n", + " \tlinked_kitems = [], \n", + " \n", + " \taffiliations = [], \n", + " \n", + " \tauthors = [\n", + " \t\tAuthor(user_id=4440f8c8-f443-4114-a7a7-d8e2a6b5d776)\n", " \t], \n", " \n", + " \tavatar_exists = False, \n", + " \n", + " \tcontacts = [], \n", + " \n", + " \tcreated_at = 2024-02-27 15:41:27.479204, \n", + " \n", + " \tupdated_at = 2024-02-27 15:41:27.479204, \n", + " \n", + " \texternal_links = [], \n", + " \n", + " \tkitem_apps = [], \n", + " \n", + " \tsummary = None, \n", + " \n", + " \tuser_groups = [], \n", + " \n", + " \tcustom_properties = CustomProperties(content={})\n", + " ),\n", + " KItem(\n", + " \n", + " \tname = foo 4, \n", + " \n", + " \tid = 2462e5a6-c1f5-4ddc-bca4-444716927989, \n", + " \n", + " \tktype_id = organization, \n", + " \n", + " \tslug = foo4, \n", + " \n", + " \tannotations = [\n", + " \t\tAnnotation(iri=www.example.org/bar, name=bar, namespace=https://www.example.org)\n", + " \t], \n", + " \n", + " \tattachments = [], \n", + " \n", + " \tlinked_kitems = [], \n", + " \n", " \taffiliations = [], \n", " \n", " \tauthors = [\n", @@ -1907,9 +2412,9 @@ " \n", " \tcontacts = [], \n", " \n", - " \tcreated_at = 2024-02-23 15:00:22.963418, \n", + " \tcreated_at = 2024-02-27 15:41:28.730047, \n", " \n", - " \tupdated_at = 2024-02-23 15:00:22.963418, \n", + " \tupdated_at = 2024-02-27 15:41:28.730047, \n", " \n", " \texternal_links = [], \n", " \n", @@ -2019,7 +2524,7 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.9.7" + "version": "3.12.1" } }, "nbformat": 4,