Fix gh cron CI (#4272)

* Remove gsd pin from deployed package check

* temporary shim to get cron ci going

* deal with numpy alias removals

* Update CHANGELOG

* Update gh-ci-cron.yaml

.github/workflows/gh-ci-cron.yaml

@@ -251,7 +251,6 @@ jobs:
       with:
         micromamba: true
         full-deps: true
-        gsd: "gsd<3.0"
 
     - name: install_mdanalysis
       run: |

package/CHANGELOG

@@ -18,6 +18,8 @@ The rules for this file:
  * 2.7.0
 
 Fixes
+  * Deprecated np.float_ and np.NaN aliases have been replaced with
+    their original type value (np.float64 and np.nan) (PR #4272)
 
 Enhancements
 

package/MDAnalysis/lib/util.py

@@ -1315,9 +1315,9 @@ def fixedwidth_bins(delta, xmin, xmax):
     """
     if not np.all(xmin < xmax):
         raise ValueError('Boundaries are not sane: should be xmin < xmax.')
-    _delta = np.asarray(delta, dtype=np.float_)
-    _xmin = np.asarray(xmin, dtype=np.float_)
-    _xmax = np.asarray(xmax, dtype=np.float_)
+    _delta = np.asarray(delta, dtype=np.float64)
+    _xmin = np.asarray(xmin, dtype=np.float64)
+    _xmax = np.asarray(xmax, dtype=np.float64)
     _length = _xmax - _xmin
     N = np.ceil(_length / _delta).astype(np.int_)  # number of bins
     dx = 0.5 * (N * _delta - _length)  # add half of the excess to each end

testsuite/MDAnalysisTests/analysis/test_density.py

@@ -351,7 +351,7 @@ def test_ValueError_userdefn_xdim_nanvalue(self, universe):
         with pytest.raises(ValueError, match=regex):
             D = density.DensityAnalysis(
                 universe.select_atoms(self.selections['static']),
-                delta=self.delta, xdim=np.NaN, ydim=10.0, zdim=10.0,
+                delta=self.delta, xdim=np.nan, ydim=10.0, zdim=10.0,
                 gridcenter=self.gridcenters['static_defined']).run(step=5)
 
     def test_warn_noatomgroup(self, universe):