.gitignore

# folders to ignore when pushing to github:
.ipynb_checkpoints/
data
data_GWAS_non_public/
results
results.zip
supporting_files/celltype_reannotation/old_versions_gitignore/
supporting_files/HLCA_author_overview.csv
supporting_files/metadata_harmonization/old_versions_gitignore/
scripts/__pycache__
notebooks/.ipynb_checkpoints/
notebooks/Author_info_parsing.ipynb
notebooks/1_building_and_annotating_the_atlas_core/.ipynb_checkpoints/
notebooks/2_modeling_of_covariates_and_GWAS_analysis/.ipynb_checkpoints/
notebooks/3_atlas_extension/.ipynb_checkpoints
notebooks/3_atlas_extension/HLCA_extension_data_preprocessing/.ipynb_checkpoints
notebooks/3_atlas_extension/Untitled.ipynb
notebooks/3_atlas_extension/scratch_pad.ipynb
notebooks/1_building_and_annotating_the_atlas_core/scratch_pad_temp.ipynb
scripts/bash/LDSC_GWAS_to_celltype/sbatch_ldsc_regr_*.out
notebooks/2_downstream_analysis_of_HLCA_core/.ipynb_checkpoints