DESCRIPTION

Package: jaffelab
Title: Commonly used functions by the Jaffe lab
Version: 0.99.34
Date: 2024-03-27
Authors@R: c(person("Leonardo", "Collado-Torres", 
	role = c("aut", "cre"), email = "lcolladotor@gmail.com",
	comment = c(ORCID = "0000-0003-2140-308X")), 
	person(c("Andrew", "E."), "Jaffe", role = "aut",
	email = "andrew.jaffe@libd.org",
    comment = c(ORCID = "0000-0001-6886-1454")), 
	person(c("Emily", "E."), "Burke", role = "aut",
	email = "emily.burke@libd.org"))
Depends:
    R (>= 3.3.0),
    rafalib
Imports:
    GenomicRanges,
    graphics,
    grDevices,
    IRanges,
    limma,
    methods,
    parallel,
    RColorBrewer,
    S4Vectors,
    segmented,
    stats,
    SummarizedExperiment,
    utils,
    googledrive
Suggests:
    covr,
    BiocStyle (>= 2.3.12),
    derfinderHelper,
    knitcitations,
    knitr (>= 1.6),
    remotes,
    rmarkdown (>= 0.9.5),
    sessioninfo,
    testthat
VignetteBuilder: knitr
Description: The jaffelab contains miscellaneous functions that are commonly
    used in the Jaffe lab http://aejaffe.com/. It is similar in spirit to
    https://cran.r-project.org/package=rafalib and implements several helper
    functions that were using in Lieber Institute for Brain Development
    RNA-sequencing projects such as BrainSEQ Phase I, BrainSEQ Phase II, among
    other ones. 
License: Artistic-2.0
Encoding: UTF-8
LazyData: true
URL: https://github.com/LieberInstitute/jaffelab
BugReports: https://github.com/LieberInstitute/jaffelab/issues
RoxygenNote: 7.3.1
Roxygen: list(markdown = TRUE)