Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

masif_site docker tutorial 4ZQk_A error #85

Open
seojin3007 opened this issue Sep 30, 2024 · 0 comments
Open

masif_site docker tutorial 4ZQk_A error #85

seojin3007 opened this issue Sep 30, 2024 · 0 comments

Comments

@seojin3007
Copy link

seojin3007 commented Sep 30, 2024

Downloading PDB structure '4ZQk'...
Desired structure doesn't exists
Empty
Traceback (most recent call last):
File "/masif/source//data_preparation/01-pdb_extract_and_triangulate.py", line 48, in
extractPDB(pdb_filename, out_filename1+".pdb", chain_ids1)
File "/masif/source/input_output/extractPDB.py", line 38, in extractPDB
model = Selection.unfold_entities(struct, "M")[0]
IndexError: list index out of range
4ZQk_A
Reading data from input ply surface files.
Traceback (most recent call last):
File "/masif/source//data_preparation/04-masif_precompute.py", line 74, in
input_feat[pid], rho[pid], theta[pid], mask[pid], neigh_indices[pid], iface_labels[pid], verts[pid] = read_data_from_surface(ply_file[pid], params)
File "/masif/source/masif_modules/read_data_from_surface.py", line 23, in read_data_from_surface
mesh = pymesh.load_mesh(ply_fn)
File "/usr/local/lib/python3.6/site-packages/pymesh/meshio.py", line 21, in load_mesh
raise IOError("File not found: {}".format(filename));
OSError: File not found: data_preparation/01-benchmark_surfaces//4ZQk_A.ply

I'm using docker to reproduce the tutorial results, but I keep on getting this error.
Can someone please help me through this?

@seojin3007 seojin3007 changed the title masif_site docker tutorial 4ZQk? masif_site docker tutorial 4ZQk_A error Sep 30, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant