From e9e456cd6e0908e6682c59b7c6b2f0a91c95bda9 Mon Sep 17 00:00:00 2001 From: Lloyd Dakin Date: Thu, 15 Aug 2024 13:11:18 -0700 Subject: [PATCH] get_tif analysis action --- datalab/datalab_session/analysis/get_tif.py | 24 + datalab/datalab_session/util.py | 12 +- datalab/datalab_session/views.py | 4 +- poetry.lock | 957 ++++++++++---------- 4 files changed, 516 insertions(+), 481 deletions(-) create mode 100644 datalab/datalab_session/analysis/get_tif.py diff --git a/datalab/datalab_session/analysis/get_tif.py b/datalab/datalab_session/analysis/get_tif.py new file mode 100644 index 0000000..b867e6b --- /dev/null +++ b/datalab/datalab_session/analysis/get_tif.py @@ -0,0 +1,24 @@ +from datalab.datalab_session.util import create_tif, get_fits, add_file_to_bucket, key_exists, get_s3_url + +def get_tif(input: dict): + """ + Checks bucket for tif file and returns the url + if the file doesn't exist, generates a new tif file + input: dict + basename: str + source: str + """ + + basename = input["basename"] + file_key = f'{basename}/{basename}.tif' + + # Check in bucket for tif file + if(key_exists(file_key)): + tif_url = get_s3_url(file_key) + else: + # If tif file doesn't exist, generate a new tif file + fits_path = get_fits(basename) + tif_path = create_tif(basename, fits_path) + tif_url = add_file_to_bucket(file_key, tif_path) + + return {"tif_url": tif_url} diff --git a/datalab/datalab_session/util.py b/datalab/datalab_session/util.py index 97c0431..625b3a6 100644 --- a/datalab/datalab_session/util.py +++ b/datalab/datalab_session/util.py @@ -10,7 +10,7 @@ from botocore.exceptions import ClientError from django.conf import settings -from fits2image.conversions import fits_to_jpg +from fits2image.conversions import fits_to_jpg, fits_to_tif log = logging.getLogger() log.setLevel(logging.INFO) @@ -176,6 +176,16 @@ def create_fits(key: str, image_arr: np.ndarray) -> str: return fits_path +def create_tif(key: str, fits_path: np.ndarray) -> str: + """ + Creates a full sized TIFF file from a FITs + """ + height, width = get_fits_dimensions(fits_path) + tif_path = tempfile.NamedTemporaryFile(suffix=f'{key}.tif').name + fits_to_tif(fits_path, tif_path, width=width, height=height) + + return tif_path + def create_jpgs(cache_key, fits_paths: str, color=False) -> list: """ Create jpgs from fits files and save them to S3 diff --git a/datalab/datalab_session/views.py b/datalab/datalab_session/views.py index 653c378..05a893c 100644 --- a/datalab/datalab_session/views.py +++ b/datalab/datalab_session/views.py @@ -5,7 +5,7 @@ from datalab.datalab_session.data_operations.utils import available_operations from datalab.datalab_session.analysis.line_profile import line_profile from datalab.datalab_session.analysis.source_catalog import source_catalog - +from datalab.datalab_session.analysis.get_tif import get_tif class OperationOptionsApiView(RetrieveAPIView): """ View to retrieve the set of operations available, for the UI to use """ @@ -31,6 +31,8 @@ def post(self, request, action): output = line_profile(input) case 'source-catalog': output = source_catalog(input) + case 'get-tif': + output = get_tif(input) case _: raise Exception(f'Analysis action {action} not found') diff --git a/poetry.lock b/poetry.lock index 0fb9b3c..f0f2737 100644 --- a/poetry.lock +++ b/poetry.lock @@ -2,14 +2,14 @@ [[package]] name = "asgiref" -version = "3.7.2" +version = "3.8.1" description = "ASGI specs, helper code, and adapters" category = "main" optional = false -python-versions = ">=3.7" +python-versions = ">=3.8" files = [ - {file = "asgiref-3.7.2-py3-none-any.whl", hash = "sha256:89b2ef2247e3b562a16eef663bc0e2e703ec6468e2fa8a5cd61cd449786d4f6e"}, - {file = "asgiref-3.7.2.tar.gz", hash = "sha256:9e0ce3aa93a819ba5b45120216b23878cf6e8525eb3848653452b4192b92afed"}, + {file = "asgiref-3.8.1-py3-none-any.whl", hash = "sha256:3e1e3ecc849832fe52ccf2cb6686b7a55f82bb1d6aee72a58826471390335e47"}, + {file = "asgiref-3.8.1.tar.gz", hash = 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