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train_backbone.py
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train_backbone.py
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"""
Backbone Pre-Training script.
"""
import os
import time
import random
import numpy as np
import argparse
import shutil
import torch
import torch.backends.cudnn as cudnn
import torch.nn as nn
import torch.nn.parallel
import torch.optim
import torch.utils.data
import torch.multiprocessing as mp
import torch.distributed as dist
import torch.optim.lr_scheduler as lr_scheduler
from tensorboardX import SummaryWriter
from util import config
from util.s3dis_fs import S3DIS
from util.scannet_v2_fs import Scannetv2
from util.common_util import (
AverageMeter,
intersectionAndUnionGPU,
find_free_port,
)
from util import transform
from util.logger import get_logger
from util.data_util import collate_fn, collate_fn_limit
from functools import partial
from util.lr import MultiStepWithWarmup, PolyLR
import torch_points_kernels as tp
def get_parser():
parser = argparse.ArgumentParser(
description="PyTorch Point Cloud Semantic Segmentation"
)
parser.add_argument(
"--config",
type=str,
default="config/s3dis_stratified_pretraining.yaml",
help="config file",
)
parser.add_argument(
"opts",
help="see config/s3dis_stratified_pretraining.yaml for all options",
default=None,
nargs=argparse.REMAINDER,
)
args = parser.parse_args()
assert args.config is not None
cfg = config.load_cfg_from_cfg_file(args.config)
if args.opts is not None:
cfg = config.merge_cfg_from_list(cfg, args.opts)
return cfg
def worker_init_fn(worker_id):
random.seed(args.manual_seed + worker_id)
def main_process():
return not args.multiprocessing_distributed or (
args.multiprocessing_distributed
and args.rank % args.ngpus_per_node == 0
)
def main():
args = get_parser()
os.environ["CUDA_VISIBLE_DEVICES"] = ",".join(
str(x) for x in args.train_gpu
)
if not os.path.exists(args.save_path):
os.makedirs(args.save_path)
# import torch.backends.mkldnn
# ackends.mkldnn.enabled = False
# os.environ["LRU_CACHE_CAPACITY"] = "1"
# cudnn.deterministic = True
if args.manual_seed is not None:
random.seed(args.manual_seed)
np.random.seed(args.manual_seed)
torch.manual_seed(args.manual_seed)
torch.cuda.manual_seed(args.manual_seed)
torch.cuda.manual_seed_all(args.manual_seed)
cudnn.benchmark = False
cudnn.deterministic = True
if args.dist_url == "env://" and args.world_size == -1:
args.world_size = int(os.environ["WORLD_SIZE"])
args.distributed = args.world_size > 1 or args.multiprocessing_distributed
args.ngpus_per_node = len(args.train_gpu)
if len(args.train_gpu) == 1:
args.sync_bn = False
args.distributed = False
args.multiprocessing_distributed = False
if args.multiprocessing_distributed:
port = find_free_port()
args.dist_url = f"tcp://127.0.0.1:{port}"
args.world_size = args.ngpus_per_node * args.world_size
mp.spawn(
main_worker,
nprocs=args.ngpus_per_node,
args=(args.ngpus_per_node, args),
)
else:
main_worker(args.train_gpu, args.ngpus_per_node, args)
def main_worker(gpu, ngpus_per_node, argss):
global args, best_iou
args, best_iou = argss, 0
if args.distributed:
torch.cuda.set_device(gpu)
if args.dist_url == "env://" and args.rank == -1:
args.rank = int(os.environ["RANK"])
if args.multiprocessing_distributed:
args.rank = args.rank * ngpus_per_node + gpu
dist.init_process_group(
backend=args.dist_backend,
init_method=args.dist_url,
world_size=args.world_size,
rank=args.rank,
)
if main_process():
global logger, writer
logger = get_logger(args.save_path)
writer = SummaryWriter(args.save_path)
if args.data_name == "s3dis":
train_transform = None
if args.aug:
jitter_sigma = args.get("jitter_sigma", 0.01)
jitter_clip = args.get("jitter_clip", 0.05)
if main_process():
logger.info("augmentation all")
logger.info(
"jitter_sigma: {}, jitter_clip: {}".format(
jitter_sigma, jitter_clip
)
)
train_transform = transform.Compose(
[
transform.RandomRotate(
along_z=args.get("rotate_along_z", True)
),
transform.RandomScale(
scale_low=args.get("scale_low", 0.8),
scale_high=args.get("scale_high", 1.2),
),
transform.RandomJitter(
sigma=jitter_sigma, clip=jitter_clip
),
transform.RandomDropColor(
color_augment=args.get("color_augment", 0.0)
),
]
)
train_data = S3DIS(
split="train",
data_root=args.data_root,
voxel_size=args.voxel_size,
voxel_max=args.voxel_max,
transform=train_transform,
shuffle_index=True,
loop=args.loop,
cvfold=args.cvfold,
)
args.classes = len(train_data.train_classes) + 1
elif args.data_name == "scannetv2":
train_transform = None
if args.aug:
if main_process():
logger.info("use Augmentation")
train_transform = transform.Compose(
[
transform.RandomRotate(
along_z=args.get("rotate_along_z", True)
),
transform.RandomScale(
scale_low=args.get("scale_low", 0.8),
scale_high=args.get("scale_high", 1.2),
),
transform.RandomDropColor(
color_augment=args.get("color_augment", 0.0)
),
]
)
train_data = Scannetv2(
split="train",
data_root=args.data_root,
voxel_size=args.voxel_size,
voxel_max=args.voxel_max,
transform=train_transform,
shuffle_index=True,
loop=args.loop,
cvfold=args.cvfold,
)
args.classes = len(train_data.train_classes) + 1
else:
raise ValueError(
"The dataset {} is not supported.".format(args.data_name)
)
# get model
if args.arch == "stratified_transformer":
from model.stratified_transformer import Stratified
args.patch_size = args.grid_size * args.patch_size
args.window_size = [
args.patch_size * args.window_size * (2**i)
for i in range(args.num_layers)
]
args.grid_sizes = [
args.patch_size * (2**i) for i in range(args.num_layers)
]
args.quant_sizes = [
args.quant_size * (2**i) for i in range(args.num_layers)
]
model = Stratified(
args.downsample_scale,
args.depths,
args.channels,
args.num_heads,
args.window_size,
args.up_k,
args.grid_sizes,
args.quant_sizes,
rel_query=args.rel_query,
rel_key=args.rel_key,
rel_value=args.rel_value,
drop_path_rate=args.drop_path_rate,
concat_xyz=args.concat_xyz,
num_classes=args.classes,
ratio=args.ratio,
k=args.k,
prev_grid_size=args.grid_size,
sigma=1.0,
num_layers=args.num_layers,
stem_transformer=args.stem_transformer,
)
else:
raise Exception("architecture {} not supported yet".format(args.arch))
# set loss func
criterion = nn.CrossEntropyLoss(ignore_index=args.ignore_label).cuda()
# set optimizer
if args.optimizer == "SGD":
optimizer = torch.optim.SGD(
model.parameters(),
lr=args.base_lr,
momentum=args.momentum,
weight_decay=args.weight_decay,
)
elif args.optimizer == "AdamW":
transformer_lr_scale = args.get("transformer_lr_scale", 0.1)
param_dicts = [
{
"params": [
p
for n, p in model.named_parameters()
if "blocks" not in n and p.requires_grad
]
},
{
"params": [
p
for n, p in model.named_parameters()
if "blocks" in n and p.requires_grad
],
"lr": args.base_lr * transformer_lr_scale,
},
]
optimizer = torch.optim.AdamW(
param_dicts, lr=args.base_lr, weight_decay=args.weight_decay
)
if main_process():
logger.info(args)
logger.info("=> creating model ...")
logger.info("Classes: {}".format(args.classes))
logger.info(model)
logger.info(
"#Model parameters: {}".format(
sum([x.nelement() for x in model.parameters()])
)
)
if args.get("max_grad_norm", None):
logger.info("args.max_grad_norm = {}".format(args.max_grad_norm))
if args.distributed:
args.batch_size = int(args.batch_size / ngpus_per_node)
args.batch_size_val = int(args.batch_size_val / ngpus_per_node)
args.workers = int(
(args.workers + ngpus_per_node - 1) / ngpus_per_node
)
if args.sync_bn:
if main_process():
logger.info("use SyncBN")
model = torch.nn.SyncBatchNorm.convert_sync_batchnorm(model).cuda()
model = torch.nn.parallel.DistributedDataParallel(
model, device_ids=[gpu], find_unused_parameters=True
)
else:
model = model.cuda()
if args.weight:
if os.path.isfile(args.weight):
if main_process():
logger.info("=> loading weight '{}'".format(args.weight))
checkpoint = torch.load(args.weight)
model.load_state_dict(checkpoint["state_dict"])
if main_process():
logger.info("=> loaded weight '{}'".format(args.weight))
else:
logger.info("=> no weight found at '{}'".format(args.weight))
if args.resume:
if os.path.isfile(args.resume):
if main_process():
logger.info("=> loading checkpoint '{}'".format(args.resume))
checkpoint = torch.load(
args.resume, map_location=lambda storage, loc: storage.cuda()
)
args.start_epoch = checkpoint["epoch"]
model.load_state_dict(checkpoint["state_dict"], strict=True)
optimizer.load_state_dict(checkpoint["optimizer"])
scheduler_state_dict = checkpoint["scheduler"]
best_iou = checkpoint["best_iou"]
if main_process():
logger.info(
"=> loaded checkpoint '{}' (epoch {})".format(
args.resume, checkpoint["epoch"]
)
)
else:
if main_process():
logger.info(
"=> no checkpoint found at '{}'".format(args.resume)
)
if main_process():
logger.info("train_data samples: '{}'".format(len(train_data)))
if args.distributed:
train_sampler = torch.utils.data.distributed.DistributedSampler(
train_data
)
else:
train_sampler = None
train_loader = torch.utils.data.DataLoader(
train_data,
batch_size=args.batch_size,
shuffle=(train_sampler is None),
num_workers=args.workers,
pin_memory=True,
sampler=train_sampler,
drop_last=True,
collate_fn=partial(
collate_fn_limit,
max_batch_points=args.max_batch_points,
logger=logger if main_process() else None,
),
)
val_transform = None
if args.data_name == "s3dis":
val_data = S3DIS(
split="val",
data_root=args.data_root,
voxel_size=args.voxel_size,
voxel_max=args.voxel_max,
transform=val_transform,
cvfold=args.cvfold,
)
elif args.data_name == "scannetv2":
val_data = Scannetv2(
split="val",
data_root=args.data_root,
voxel_size=args.voxel_size,
voxel_max=args.voxel_max,
transform=val_transform,
cvfold=args.cvfold,
)
else:
raise ValueError(
"The dataset {} is not supported.".format(args.data_name)
)
if args.distributed:
val_sampler = torch.utils.data.distributed.DistributedSampler(val_data)
else:
val_sampler = None
val_loader = torch.utils.data.DataLoader(
val_data,
batch_size=args.batch_size_val,
shuffle=False,
num_workers=args.workers,
pin_memory=True,
sampler=val_sampler,
collate_fn=collate_fn,
)
# set scheduler
if args.scheduler == "MultiStepWithWarmup":
assert args.scheduler_update == "step"
if main_process():
logger.info(
"scheduler: MultiStepWithWarmup. scheduler_update: {}".format(
args.scheduler_update
)
)
iter_per_epoch = len(train_loader)
milestones = [
int(args.epochs * 0.6) * iter_per_epoch,
int(args.epochs * 0.8) * iter_per_epoch,
]
scheduler = MultiStepWithWarmup(
optimizer,
milestones=milestones,
gamma=0.1,
warmup=args.warmup,
warmup_iters=args.warmup_iters,
warmup_ratio=args.warmup_ratio,
)
elif args.scheduler == "MultiStep":
assert args.scheduler_update == "epoch"
milestones = (
[int(x) for x in args.milestones.split(",")]
if hasattr(args, "milestones")
else [int(args.epochs * 0.6), int(args.epochs * 0.8)]
)
gamma = args.gamma if hasattr(args, "gamma") else 0.1
if main_process():
logger.info(
"scheduler: MultiStep. scheduler_update: {}. milestones: {}, gamma: {}".format(
args.scheduler_update, milestones, gamma
)
)
scheduler = lr_scheduler.MultiStepLR(
optimizer, milestones=milestones, gamma=gamma
)
elif args.scheduler == "Poly":
if main_process():
logger.info(
"scheduler: Poly. scheduler_update: {}".format(
args.scheduler_update
)
)
if args.scheduler_update == "epoch":
scheduler = PolyLR(
optimizer, max_iter=args.epochs, power=args.power
)
elif args.scheduler_update == "step":
iter_per_epoch = len(train_loader)
scheduler = PolyLR(
optimizer,
max_iter=args.epochs * iter_per_epoch,
power=args.power,
)
else:
raise ValueError(
"No such scheduler update {}".format(args.scheduler_update)
)
else:
raise ValueError("No such scheduler {}".format(args.scheduler))
if args.resume and os.path.isfile(args.resume):
scheduler.load_state_dict(scheduler_state_dict)
print("resume scheduler")
###################
# start training #
###################
if args.use_amp:
scaler = torch.cuda.amp.GradScaler()
else:
scaler = None
for epoch in range(args.start_epoch, args.epochs):
if args.distributed:
train_sampler.set_epoch(epoch)
if main_process():
logger.info("lr: {}".format(scheduler.get_last_lr()))
loss_train, mIoU_train, mAcc_train, allAcc_train = train(
train_loader, model, criterion, optimizer, epoch, scaler, scheduler
)
if args.scheduler_update == "epoch":
scheduler.step()
epoch_log = epoch + 1
if main_process():
writer.add_scalar("loss_train", loss_train, epoch_log)
writer.add_scalar("mIoU_train", mIoU_train, epoch_log)
writer.add_scalar("mAcc_train", mAcc_train, epoch_log)
writer.add_scalar("allAcc_train", allAcc_train, epoch_log)
is_best = False
if args.evaluate and (epoch_log % args.eval_freq == 0):
loss_val, mIoU_val, mAcc_val, allAcc_val = validate(
val_loader, model, criterion
)
if main_process():
writer.add_scalar("loss_val", loss_val, epoch_log)
writer.add_scalar("mIoU_val", mIoU_val, epoch_log)
writer.add_scalar("mAcc_val", mAcc_val, epoch_log)
writer.add_scalar("allAcc_val", allAcc_val, epoch_log)
is_best = mIoU_val > best_iou
best_iou = max(best_iou, mIoU_val)
if (epoch_log % args.save_freq == 0) and main_process():
if not os.path.exists(args.save_path + "/model/"):
os.makedirs(args.save_path + "/model/")
filename = args.save_path + "/model/model_last.pth"
logger.info("Saving checkpoint to: " + filename)
torch.save({"state_dict": model.state_dict()}, filename)
if is_best:
logger.info("Is best")
shutil.copyfile(
filename, args.save_path + "/model/model_best.pth"
)
if main_process():
writer.close()
logger.info("==>Training done!\nBest Iou: %.3f" % (best_iou))
def train(train_loader, model, criterion, optimizer, epoch, scaler, scheduler):
batch_time = AverageMeter()
data_time = AverageMeter()
loss_meter = AverageMeter()
intersection_meter = AverageMeter()
union_meter = AverageMeter()
target_meter = AverageMeter()
model.train()
end = time.time()
max_iter = args.epochs * len(train_loader)
for i, (coord, feat, target, offset) in enumerate(
train_loader
): # (n, 3), (n, c), (n), (b)
data_time.update(time.time() - end)
offset_ = offset.clone()
offset_[1:] = offset_[1:] - offset_[:-1]
batch = torch.cat(
[torch.tensor([ii] * o) for ii, o in enumerate(offset_)], 0
).long()
sigma = 1.0
radius = 2.5 * args.grid_size * sigma
neighbor_idx = tp.ball_query(
radius,
args.max_num_neighbors,
coord,
coord,
mode="partial_dense",
batch_x=batch,
batch_y=batch,
)[
0
] # (n, max_num_neighbors)
coord, feat, target, offset = (
coord.cuda(non_blocking=True),
feat.cuda(non_blocking=True),
target.cuda(non_blocking=True),
offset.cuda(non_blocking=True),
)
batch = batch.cuda(non_blocking=True)
neighbor_idx = neighbor_idx.cuda(non_blocking=True)
assert batch.shape[0] == feat.shape[0]
if args.concat_xyz:
feat = torch.cat([feat, coord], 1) # (n, c+3)
use_amp = args.use_amp
with torch.cuda.amp.autocast(enabled=use_amp):
output, gt, upsample_out = model(
feat, coord, offset, batch, neighbor_idx, target
)
assert output.shape[1] == args.classes
if gt.shape[-1] == 1:
gt = gt[:, 0] # for cls
loss = criterion(output, gt)
optimizer.zero_grad()
if use_amp:
scaler.scale(loss).backward()
scaler.step(optimizer)
scaler.update()
else:
loss.backward()
optimizer.step()
if args.scheduler_update == "step":
scheduler.step()
output = upsample_out.max(1)[1]
n = gt.size(0)
if args.multiprocessing_distributed:
loss *= n
count = target.new_tensor([n], dtype=torch.long)
dist.all_reduce(loss), dist.all_reduce(count)
n = count.item()
loss /= n
intersection, union, target = intersectionAndUnionGPU(
output, target, args.classes, args.ignore_label
)
if args.multiprocessing_distributed:
dist.all_reduce(intersection), dist.all_reduce(
union
), dist.all_reduce(target)
intersection, union, target = (
intersection.cpu().numpy(),
union.cpu().numpy(),
target.cpu().numpy(),
)
intersection_meter.update(intersection), union_meter.update(
union
), target_meter.update(target)
accuracy = sum(intersection_meter.val) / (
sum(target_meter.val) + 1e-10
)
loss_meter.update(loss.item(), n)
batch_time.update(time.time() - end)
end = time.time()
# calculate remain time
current_iter = epoch * len(train_loader) + i + 1
remain_iter = max_iter - current_iter
remain_time = remain_iter * batch_time.avg
t_m, t_s = divmod(remain_time, 60)
t_h, t_m = divmod(t_m, 60)
remain_time = "{:02d}:{:02d}:{:02d}".format(
int(t_h), int(t_m), int(t_s)
)
if (i + 1) % args.print_freq == 0 and main_process():
lr = scheduler.get_last_lr()
if isinstance(lr, list):
lr = [round(x, 8) for x in lr]
elif isinstance(lr, float):
lr = round(lr, 8)
logger.info(
"Epoch: [{}/{}][{}/{}] "
"Data {data_time.val:.3f} ({data_time.avg:.3f}) "
"Batch {batch_time.val:.3f} ({batch_time.avg:.3f}) "
"Remain {remain_time} "
"Loss {loss_meter.val:.4f} "
"Lr: {lr} "
"Accuracy {accuracy:.4f}.".format(
epoch + 1,
args.epochs,
i + 1,
len(train_loader),
batch_time=batch_time,
data_time=data_time,
remain_time=remain_time,
loss_meter=loss_meter,
lr=lr,
accuracy=accuracy,
)
)
if main_process():
writer.add_scalar("loss_train_batch", loss_meter.val, current_iter)
writer.add_scalar(
"mIoU_train_batch",
np.mean(intersection / (union + 1e-10)),
current_iter,
)
writer.add_scalar(
"mAcc_train_batch",
np.mean(intersection / (target + 1e-10)),
current_iter,
)
writer.add_scalar("allAcc_train_batch", accuracy, current_iter)
iou_class = intersection_meter.sum / (union_meter.sum + 1e-10)
accuracy_class = intersection_meter.sum / (target_meter.sum + 1e-10)
mIoU = np.mean(iou_class)
mAcc = np.mean(accuracy_class)
allAcc = sum(intersection_meter.sum) / (sum(target_meter.sum) + 1e-10)
if main_process():
logger.info(
"Train result at epoch [{}/{}]: mIoU/mAcc/allAcc {:.4f}/{:.4f}/{:.4f}.".format(
epoch + 1, args.epochs, mIoU, mAcc, allAcc
)
)
return loss_meter.avg, mIoU, mAcc, allAcc
def validate(val_loader, model, criterion):
if main_process():
logger.info(">>>>>>>>>>>>>>>> Start Evaluation >>>>>>>>>>>>>>>>")
batch_time = AverageMeter()
data_time = AverageMeter()
loss_meter = AverageMeter()
intersection_meter = AverageMeter()
union_meter = AverageMeter()
target_meter = AverageMeter()
torch.cuda.empty_cache()
model.eval()
end = time.time()
for i, (coord, feat, target, offset) in enumerate(val_loader):
data_time.update(time.time() - end)
offset_ = offset.clone()
offset_[1:] = offset_[1:] - offset_[:-1]
batch = torch.cat(
[torch.tensor([ii] * o) for ii, o in enumerate(offset_)], 0
).long()
sigma = 1.0
radius = 2.5 * args.grid_size * sigma
neighbor_idx = tp.ball_query(
radius,
args.max_num_neighbors,
coord,
coord,
mode="partial_dense",
batch_x=batch,
batch_y=batch,
)[0]
coord, feat, target, offset = (
coord.cuda(non_blocking=True),
feat.cuda(non_blocking=True),
target.cuda(non_blocking=True),
offset.cuda(non_blocking=True),
)
batch = batch.cuda(non_blocking=True)
neighbor_idx = neighbor_idx.cuda(non_blocking=True)
assert batch.shape[0] == feat.shape[0]
if target.shape[-1] == 1:
target = target[:, 0] # for cls
if args.concat_xyz:
feat = torch.cat([feat, coord], 1)
with torch.no_grad():
output, gt, upsample_out = model(
feat, coord, offset, batch, neighbor_idx, target
)
loss = criterion(output, gt)
output = upsample_out.max(1)[1]
n = gt.size(0)
if args.multiprocessing_distributed:
loss *= n
count = target.new_tensor([n], dtype=torch.long)
dist.all_reduce(loss), dist.all_reduce(count)
n = count.item()
loss /= n
intersection, union, target = intersectionAndUnionGPU(
output, target, args.classes, args.ignore_label
)
if args.multiprocessing_distributed:
dist.all_reduce(intersection), dist.all_reduce(
union
), dist.all_reduce(target)
intersection, union, target = (
intersection.cpu().numpy(),
union.cpu().numpy(),
target.cpu().numpy(),
)
intersection_meter.update(intersection), union_meter.update(
union
), target_meter.update(target)
accuracy = sum(intersection_meter.val) / (
sum(target_meter.val) + 1e-10
)
loss_meter.update(loss.item(), n)
batch_time.update(time.time() - end)
end = time.time()
if (i + 1) % args.print_freq == 0 and main_process():
logger.info(
"Test: [{}/{}] "
"Data {data_time.val:.3f} ({data_time.avg:.3f}) "
"Batch {batch_time.val:.3f} ({batch_time.avg:.3f}) "
"Loss {loss_meter.val:.4f} ({loss_meter.avg:.4f}) "
"Accuracy {accuracy:.4f}.".format(
i + 1,
len(val_loader),
data_time=data_time,
batch_time=batch_time,
loss_meter=loss_meter,
accuracy=accuracy,
)
)
iou_class = intersection_meter.sum / (union_meter.sum + 1e-10)
accuracy_class = intersection_meter.sum / (target_meter.sum + 1e-10)
mIoU = np.mean(iou_class)
mAcc = np.mean(accuracy_class)
allAcc = sum(intersection_meter.sum) / (sum(target_meter.sum) + 1e-10)
if main_process():
logger.info(
"Val result: mIoU/mAcc/allAcc {:.4f}/{:.4f}/{:.4f}.".format(
mIoU, mAcc, allAcc
)
)
for i in range(args.classes):
logger.info(
"Class_{} Result: iou/accuracy {:.4f}/{:.4f}.".format(
i, iou_class[i], accuracy_class[i]
)
)
logger.info("<<<<<<<<<<<<<<<<< End Evaluation <<<<<<<<<<<<<<<<<")
return loss_meter.avg, mIoU, mAcc, allAcc
if __name__ == "__main__":
import gc
gc.collect()
main()