Python 3.8.18 on any operating system with no non-standard software required.
Install graphtools 1.5.3, tensorflow 2.13.0, keras 2.13.1, numpy 1.22.4, scikit-learn 1.3.2, scipy 1.10.1, tqdm 4.66.4, scanpy 1.9.3, phate 1.0.11, magic 3.0.0, TrajectoryNet 0.2.4, scMMGAN 0.0
Each folder contains Python scripts and notebooks pertaining to analysis related to each figure for reproducibility. Small data files, figures, and results files included, and large data files available upon request.