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isd-publications.xml
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<publications xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:noNamespaceSchemaLocation="isd-publications.xsd">
<publication>
<title>Ten Simple Rules for the Care and Feeding of Scientific Data</title>
<url>http://arxiv.org/abs/1401.2134</url>
<person>Alyssa Goodman</person>
<person>Alberto Pepe</person>
<person>Alexander W. Blocker</person>
<person>Christine L. Borgman</person>
<person>Kyle Cranmer</person>
<person>Merce Crosas</person>
<person>Rosanne Di Stefano</person>
<person>Yolanda Gil</person>
<person>Paul Groth</person>
<person>Margaret Hedstrom</person>
<person>David W. Hogg</person>
<person>Vinay Kashyap</person>
<person>Ashish Mahabal</person>
<person>Aneta Siemiginowska</person>
<person>Aleksandra Slavkovic</person>
<where>To appear in PLOS Computational Biology, 2014</where>
<project>Interactive Knowledge Capture</project>
</publication>
<publication>
<title>Human Tutorial Instruction in the Raw</title>
<person>Yolanda Gil</person>
<where>ACM Transactions on Interactive Intelligent Systems, 2014</where>
<project>Interactive Knowledge Capture</project>
</publication>
<publication>
<title>Similarity Assessment and Efficient Retrieval of Semantic Workflows</title>
<url>http://www.isi.edu/~gil/papers/bergmann-gil-isj12.pdf</url>
<person>Ralph Bergmann</person>
<person>Yolanda Gil</person>
<where>Information Systems Journal, Vol. 40, 2014</where>
<project>Interactive Knowledge Capture</project>
<project>Wings</project>
</publication>
<publication>
<title>A Primer for the PROV Provenance Model</title>
<url>http://www.w3.org/TR/prov-primer/</url>
<person>Yolanda Gil</person>
<person>Simon Miles</person>
<person>Khalid Belhajjame</person>
<person>Henela Deus</person>
<person>Daniel Garijo</person>
<person>Graham Klyne</person>
<person>Paolo Missier</person>
<person>Stian Soiland-Reyes</person>
<person>Stephan Zednik</person>
<where>World Wide Web Consortium (W3C), 2014</where>
<project>Interactive Knowledge Capture</project>
</publication>
<publication>
<title>Quantifying Reproducibility in Computational Biology: The Case of the Tuberculosis Drugome</title>
<person>Daniel Garijo</person>
<person>Sarah Kinnings</person>
<person>Li Xie</person>
<person>Lei Xie</person>
<person>Yinliang Zhang</person>
<person>Philip E. Bourne</person>
<person>Yolanda Gil</person>
<where>PLOS ONE, 2013</where>
<project>Interactive Knowledge Capture</project>
</publication>
<publication>
<title>Common Motifs in Scientific Workflows: An Empirical Analysis</title>
<person>Daniel Garijo</person>
<person>Pinar Alper</person>
<person>Khalid Belhajjame</person>
<person>Oscar Corcho</person>
<person>Yolanda Gil</person>
<person>Carole Goble</person>
<where>Future Generation Computer Systems, 2013</where>
<project>Interactive Knowledge Capture</project>
</publication>
<publication>
<title>Structured Analysis of the ISI Atomic Pair Actions Dataset Using Workflows</title>
<person>Ricky J. Sethi</person>
<person>Hyunjoon Jo</person>
<person>Yolanda Gil</person>
<where>Pattern Recognition Letters 34(15), 2013</where>
<project>Interactive Knowledge Capture</project>
</publication>
<publication>
<title>The Democratization of Semantic Properties: An Analysis of Semantic Wikis</title>
<url>http://www.isi.edu/~gil/papers/gil-etal-icsc13.pdf</url>
<person>Yolanda Gil</person>
<person>Angela Knight</person>
<person>Kevin Zhang</person>
<person>Larry Zhang</person>
<person>Varun Ratnakar</person>
<person>Ricky Sethi</person>
<where>Seventh IEEE International Conference on Semantic Computing (ICSC), 2013</where>
<project>Interactive Knowledge Capture</project>
</publication>
<publication>
<title>Knowledge Capture in the Wild: A Perspective from Semantic Wiki Communities</title>
<url>http://www.isi.edu/~gil/papers/gil-ratnakar-kcap13.pdf</url>
<person>Yolanda Gil</person>
<person>Varun Ratnakar</person>
<where>Seventh ACM International Conference on Knowledge Capture (K-CAP), 2013</where>
<project>Interactive Knowledge Capture</project>
</publication>
<publication>
<title>Detecting Common Scientific Workflow Fragments Using Templates and Execution Provenance</title>
<url>http://www.isi.edu/~gil/papers/garijo-etal-kcap13.pdf</url>
<person>Daniel Garijo</person>
<person>Oscar Corcho</person>
<person>Yolanda Gil</person>
<where>Seventh ACM International Conference on Knowledge Capture (K-CAP), 2013</where>
<project>Interactive Knowledge Capture</project>
</publication>
<publication>
<title>Social Knowledge Collection</title>
<url>http://www.isi.edu/~gil/papers/gil-handbookhc13.pdf</url>
<person>Yolanda Gil</person>
<where>Handbook of Human Computation, 2013</where>
<project>Interactive Knowledge Capture</project>
</publication>
<publication>
<title>Using Semantic Workflows to Disseminate Best Practices and Accelerate Discoveries in Multi-Omic Data Analysis</title>
<url>http://www.isi.edu/~gil/papers/gil-etal-hiai13.pdf</url>
<person>Yolanda Gil</person>
<person>Shannon McWeeney</person>
<person>Christopher E. Mason</person>
<where>AAAI Workshop on Expanding the Boundaries of Health Informatics using AI (HIAI), held in conjunction with the Conference of the Association for the Advancement of Artificial Intelligence (AAAI), 2013</where>
<project>Interactive Knowledge Capture</project>
</publication>
<publication>
<title>Intelligent Assistance to Disseminate Best Practices and Accelerate Discoveries in Cancer Omics</title>
<url>http://www.isi.edu/~gil/papers/gil-etal-cbbw13.pdf</url>
<person>Yolanda Gil</person>
<person>Christopher E. Mason</person>
<person>Christina Zheng</person>
<person>Shannon McWeeney</person>
<where>2013 NCI EDRN Cancer Biomarkers Bioinformatics Workshop, Pasadena, CA, 2013</where>
<project>Interactive Knowledge Capture</project>
</publication>
<publication>
<title>Towards Task-Centered Network Models through Semantic Workflows</title>
<url>http://www.isi.edu/~gil/papers/gil-isi13.pdf</url>
<person>Yolanda Gil</person>
<where>Proceedings of the IEEE Conference on Intelligence and Security Informatics (ISI), 2013</where>
<project>Interactive Knowledge Capture</project>
</publication>
<publication>
<title>An Initial Analysis of Semantic Wikis</title>
<url>http://www.isi.edu/~gil/papers/gil-etal-iui13.pdf</url>
<person>Yolanda Gil</person>
<person>Angela Knight</person>
<person>Kevin Zhang</person>
<person>Larry Zhang</person>
<person>Ricky Sethi</person>
<where>Proceedings of the ACM International Conference on Intelligent User Interfaces (IUI), 2013</where>
<project>Interactive Knowledge Capture</project>
</publication>
<publication>
<title>The AAAI Fall Symposium on "Discovery Informatics: The Role of AI Research in Innovating Scientific Processes</title>
<url>http://www.isi.edu/~gil/papers/gil-hirsh-aimag13.pdf</url>
<person>Yolanda Gil</person>
<person>Haym Hirsh</person>
<where>AI Magazine 34(1), 2013</where>
<project>Interactive Knowledge Capture</project>
</publication>
<publication>
<title>PROV-DM: The PROV Data Model</title>
<url>http://www.w3.org/TR/prov-dm/</url>
<person>Luc Moreau</person>
<person>Paolo Missier</person>
<person>Khalid Belhajjame</person>
<person>Reza B'Far</person>
<person>James Cheney</person>
<person>Sam Coppens</person>
<person>Stephen Cresswell</person>
<person>Yolanda Gil</person>
<person>Paul Groth</person>
<person>Graham Klyne</person>
<person>Timothy Lebo</person>
<person>Jim McCusker</person>
<person>Simon Miles</person>
<person>James Myers</person>
<person>Satya Sahoo</person>
<person>Curt Tilmes</person>
<where>World Wide Web (W3C), 2013</where>
<project>Interactive Knowledge Capture</project>
</publication>
<publication>
<title>Time-Bound Analytic Tasks on Large Datasets through Dynamic Configuration of Workflows</title>
<url>http://www.isi.edu/~gil/papers/gil-etal-works13.pdf</url>
<person>Yolanda Gil</person>
<person>Varun Ratnakar</person>
<person>Rishi Verma</person>
<person>Andrew Hart</person>
<person>Paul Ramirez</person>
<person>Arni Sumarlidason</person>
<person>Sam Park</person>
<where>Proceedings of the Eighth Workshop on Workflows in Support of Large-Scale Science (WORKS), held in conjunction with ACM Supercomputing 2013, Denver, Colorado, November 2013</where>
<project>Interactive Knowledge Capture</project>
<project>WOOT</project>
</publication>
<publication>
<title>Capturing Data Analytics and Visualization Expertise with Workflows</title>
<url>http://www.isi.edu/~gil/papers/kale-etal-aaaifss13.pdf</url>
<person>David Kale</person>
<person>Samuel Di</person>
<person>Yan Liu</person>
<person>Yolanda Gil</person>
<where>AAAI Fall Symposium in Discovery Informatics, November 2013</where>
<project>Interactive Knowledge Capture</project>
<project>WOOT</project>
</publication>
<publication>
<title>Large-Scale Multimedia Content Analysis Using Scientific Workflows</title>
<url>http://www.isi.edu/~gil/papers/sethi-etal-mm13.pdf</url>
<person>Hyunjoon Jo</person>
<person>Ricky Sethi</person>
<person>Andrew Philpot</person>
<person>Yolanda Gil</person>
<where>ACM International Conference on Multimedia, October 2013</where>
<project>Interactive Knowledge Capture</project>
<project>WOOT</project>
</publication>
<publication>
<title>Mapping Semantic Workflows to Alternative Workflow Execution</title>
<url>http://www.isi.edu/~gil/papers/gil-icsc13.pdf</url>
<person>Yolanda Gil</person>
<where>IEEE International Conference on Semantic Computing (ICSC), September 2013</where>
<project>Interactive Knowledge Capture</project>
<project>WOOT</project>
</publication>
<publication>
<title>Requirements for Provenance on the Web</title>
<url>http://www.isi.edu/~gil/papers/groth-etal-ijdc12.pdf</url>
<person>Paul Groth</person>
<person>Yolanda Gil</person>
<person>James Cheney</person>
<person>Simon Miles</person>
<where>International Journal of Digital Curation, 7(1), 2012</where>
<project>Interactive Knowledge Capture</project>
</publication>
<publication>
<title>Capturing Common Knowledge about Tasks: Intelligent Assistance for To Do Lists</title>
<url>http://www.isi.edu/~gil/papers/gil-etal-tiis12.pdf</url>
<person>Yolanda Gil</person>
<person>Varun Ratnakar</person>
<person>Timothy Chklovski</person>
<person>Paul Groth</person>
<person>Denny Vrandecic</person>
<where>ACM Transactions on Interactive Intelligent Systems, 2012</where>
<project>Interactive Knowledge Capture</project>
</publication>
<publication>
<title>Augmenting PROV with Plans in P-PLAN: Scientific Processes as Linked Data</title>
<url>http://www.isi.edu/~gil/papers/garijo-gil-lisc12.pdf</url>
<person>Daniel Garijo</person>
<person>Yolanda Gil</person>
<where>Second International Workshop on Linked Science: Tackling Big Data (LISC), held in conjunction with the International Semantic Web Conference (ISWC), 2012</where>
<project>Interactive Knowledge Capture</project>
</publication>
<publication>
<title>Discovery Informatics: AI Opportunities in Scientific Discovery</title>
<url>http://www.isi.edu/~gil/papers/gil-hirsh-aaaifssdi12.pdf</url>
<person>Yolanda Gil</person>
<person>Haym Hirsh</person>
<where>AAAI Fall Symposium on Discovery Informatics: The Role of AI Research in Innovating Scientific Processes, 2012</where>
<project>Interactive Knowledge Capture</project>
</publication>
<publication>
<title>Organic Data Sharing: A Novel Approach to Scientific Data Sharing</title>
<url>http://www.isi.edu/~gil/papers/garijo-gil-lisc12.pdf</url>
<person>Yolanda Gil</person>
<person>Varun Ratnakar</person>
<person>Paul Hanson</person>
<where>Second International Workshop on Linked Science: Tackling Big Data (LISC), held in conjunction with the International Semantic Web Conference (ISWC), 2012</where>
<project>Interactive Knowledge Capture</project>
</publication>
<publication>
<title>Automatic Metadata Annotation through Reconstructing Provenance</title>
<url>http://www.isi.edu/~gil/papers/groth-etal-swpm12.pdf</url>
<person>Paul Groth</person>
<person>Yolanda Gil</person>
<person>Sara Magliacane</person>
<where>Proceedings of the Third International Workshop on the role of Semantic Web in Provenance Management (SWPM), 2012</where>
<project>Interactive Knowledge Capture</project>
</publication>
<publication>
<title>Common Motifs in Scientific Workflows: An Empirical Analysis</title>
<url>http://www.isi.edu/~gil/papers/garijo-etal-escience12.pdf</url>
<person>Daniel Garijo</person>
<person>Pinar Alper</person>
<person>Khalid Belhajjame</person>
<person>Oscar Corcho</person>
<person>Yolanda Gil</person>
<person>Carole Goble</person>
<where>Proceedings of the IEEE Conference on e-Science, Chicago, 2012</where>
<project>Interactive Knowledge Capture</project>
<project>Wings</project>
</publication>
<publication>
<title>Scientific Workflows: The Key to Convergence?</title>
<person>Mike P. McCann</person>
<person>Andreas F. Hofmann</person>
<person>Thomas C. Harmon</person>
<person>Yolanda Gil</person>
<where>Ocean Sciences Meeting, Salt Lake City, Utah, 2012</where>
<project>Interactive Knowledge Capture</project>
</publication>
<publication>
<title>Designing a Roadmap for Workflow Cyberinfrastructure in the Geosciences: From Big Data to the Long Tail</title>
<person>Yolanda Gil</person>
<person>Ewa Deelman</person>
<person>Ibrahim Demir</person>
<person>Chris Duffy</person>
<person>Marlon Pierce</person>
<person>Suresh Marru</person>
<person>Gerry Wiener</person>
<where>American Geophysical Union Fall Meeting, San Francisco, CA, 2012</where>
<project>Interactive Knowledge Capture</project>
</publication>
<publication>
<title>Using Semantic Workflows for Genome-Scale Analysis</title>
<person>Yolanda Gil</person>
<person>Varun Ratnakar</person>
<person>Ewa Deelman</person>
<person>Christopher Mason</person>
<where>International Conference on Intelligent Systems for Molecular Biology (ISMB), Long Beach, CA, 2012</where>
<project>Interactive Knowledge Capture</project>
</publication>
<publication>
<title>Designing a Roadmap for Geoscience Workflows</title>
<url>http://www.agu.org/pubs/crossref/2012/2012EO240002.shtml</url>
<person>Christopher Duffy</person>
<person>Yolanda Gil</person>
<person>Ewa Deelman</person>
<person>Suresh Marru</person>
<person>Marlon Pierce</person>
<person>Ibrahim Demir</person>
<person>Gerry Wiener</person>
<where>Eos Transactions of the American Geophysical Union 93(24), 2012</where>
<project>Interactive Knowledge Capture</project>
</publication>
<publication>
<title>EarthCube Report on a Workflows Roadmap for the Geosciences</title>
<url>http://www.isi.edu/~gil/EarthCube/EC-WorkflowsRoadmap-September2012.pdf</url>
<person>Ewa Deelman</person>
<person>Chris Duffy</person>
<person>Yolanda Gil</person>
<person>Suresh Marru</person>
<person>Marlon Pierce</person>
<person>Gerry Wiener</person>
<where>National Science Foundation, Arlington, VA., 2012</where>
<project>Interactive Knowledge Capture</project>
</publication>
<publication>
<title>Final Report of the 2012 NSF Workshop on Discovery Informatics</title>
<url>http://www.isi.edu/~gil/diw2012/NSFDiscoveryInformatics2012-FinalReport.pdf</url>
<person>Yolanda Gil</person>
<person>Haym Hirsh</person>
<where>National Science Foundation, Arlington, VA., 2012</where>
<project>Interactive Knowledge Capture</project>
</publication>
<publication>
<title>Reusing Workflow Fragments Across Multiple Data Domains</title>
<url>http://www.isi.edu/~gil/papers/sethi-etal-works12.pdf</url>
<person>Ricky J. Sethi</person>
<person>Hyunjoon Jo</person>
<person>Yolanda Gil</person>
<where>Proceedings of the Seventh Workshop on Workflows in Support of Large-Scale Science (WORKS'12), held in conjunction with SC 2012, 2012</where>
<project>Interactive Knowledge Capture</project>
</publication>
<publication>
<title>A New Approach for Publishing Workflows: Abstractions, Standards, and Linked Data</title>
<url>http://www.isi.edu/~gil/papers/garijo-gil-works11.pdf</url>
<person>Daniel Garijo</person>
<person>Yolanda Gil</person>
<where>Proceedings of the Sixth Workshop on Workflows in Support of Large-Scale Science (WORKS'11), held in conjunction with SC 2011, Seattle, Washington, 2011</where>
<project>Interactive Knowledge Capture</project>
<project>Wings</project>
</publication>
<publication>
<title>A Framework for Efficient Text Analytics through Automatic Configuration and Customization of Scientific Workflows</title>
<url>http://www.isi.edu/~gil/papers/hauder-etal-eScience2011.pdf</url>
<person>Matheus Hauder</person>
<person>Yolanda Gil</person>
<person>Yan Liu</person>
<where>Proceedings of the Seventh IEEE International Conference on e-Science, Stockholm, Sweden, 2011</where>
<project>Interactive Knowledge Capture</project>
<project>Wings</project>
<project>DALE</project>
</publication>
<publication>
<title>Making Data Analysis Expertise Broadly Accessible through Workflows</title>
<url>http://www.isi.edu/~gil/papers/hauder-etal-works11.pdf</url>
<person>Matheus Hauder</person>
<person>Yolanda Gil</person>
<person>Ricky Sethi</person>
<person>Yan Liu</person>
<person>Hyunjoon Jo</person>
<where>Proceedings of the Sixth Workshop on Workflows in Support of Large-Scale Science (WORKS'11), held in conjunction with SC 2011, Seattle, Washington, 2011</where>
<project>Interactive Knowledge Capture</project>
<project>DALE</project>
<project>Wings</project>
</publication>
<publication>
<title>Linked Data for Network Science</title>
<url>http://www.isi.edu/~gil/papers/groth-gil-iswc-ls11.pdf</url>
<person>Paul Groth</person>
<person>Yolanda Gil</person>
<where>First International Workshop on Linked Science at the International Semantic Web Conference (ISWC), Bonn, Germany, 2011</where>
<project>Interactive Knowledge Capture</project>
<project>Wings</project>
</publication>
<publication>
<title>Interactive Knowledge Capture in the New Millenium: How the Semantic Web Changed Everything</title>
<url>http://www.isi.edu/~gil/papers/gil-ikcap-ker11.pdf</url>
<where>The Knowledge Engineering Review, 2011</where>
<person>Yolanda Gil</person>
<project>Interactive Knowledge Capture</project>
</publication>
<publication>
<title>Goal-Directed Meta-Control for Integrated Procedure Learning.</title>
<person>Jihie Kim</person>
<person>Karen Myers</person>
<person>Melinda Gervasio</person>
<person>Yolanda Gil</person>
<where>Metareasoning: Thinking about Thinking, Cox, M.T. and Raja, A. (Eds), MIT Press, 2011</where>
<project>Interactive Knowledge Capture</project>
<project>Metalearning</project>
</publication>
<publication>
<title>The Open Provenance Model Core Specification (v1.1)</title>
<url>http://www.isi.edu/~gil/papers/moreau-etal-fgcs11.pdf</url>
<person>Luc Moreau</person>
<person>Ben Clifford</person>
<person>Juliana Freire</person>
<person>Joe Futrelle</person>
<person>Yolanda Gil</person>
<person>Paul Groth</person>
<person>Natalia Kwasnikowska</person>
<person>Simon Miles</person>
<person>Paolo Missier</person>
<person>Jim Myers</person>
<person>Beth Plale</person>
<person>Yogesh Simmhan</person>
<person>Eric Stephan</person>
<person>Jan Van denBussche</person>
<where>Future Generation Computer Systems, 2011</where>
<project>Interactive Knowledge Capture</project>
</publication>
<publication>
<title>A Formal Framework for Combining Natural Instruction and Demonstration for End-User Programming.</title>
<url>http://www.isi.edu/~gil/papers/fritz-gil-iui11.pdf</url>
<person>Christian Fritz</person>
<person>Yolanda Gil</person>
<where>Proceedings of the ACM International Conference on Intelligent User Interfaces, Palo Alto, CA. 2011</where>
<project>Interactive Knowledge Capture</project>
<project>TellMe</project>
</publication>
<publication>
<title>Final Report of the W3C Provenance Incubator Group</title>
<url>http://www.w3.org/2005/Incubator/prov/wiki/</url>
<where>World Wide Web Consortium (W3C), 2011</where>
<person>Yolanda Gil</person>
<person>James Cheney</person>
<person>Paul Groth</person>
<person>Olaf Hartig</person>
<person>Simon Miles</person>
<person>Luc Moreau</person>
<person>Paolo Pinheiro daSilva</person>
<project>Interactive Knowledge Capture</project>
</publication>
<publication>
<title>Want World Domination? Win at Risk! -- Matching To-Do Items with How-Tos from the Web</title>
<url>http://www.isi.edu/~gil/papers/vrandecic-etal-iui11.pdf</url>
<person>Denny Vrandecic</person>
<person>Yolanda Gil</person>
<person>Varun Ratnakar</person>
<where>Proceedings of the ACM International Conference on Intelligent User Interfaces, Palo Alto, CA. 2011</where>
<project>Interactive Knowledge Capture</project>
<project>HowToDo</project>
<project>Beamer</project>
</publication>
<publication>
<title>TellMe: Learning Procedures from Tutorial Instruction</title>
<url>http://www.isi.edu/~gil/papers/gil-etal-iui11.pdf</url>
<person>Yolanda Gil</person>
<person>Varun Ratnakar</person>
<person>Christian Fritz</person>
<where>Proceedings of the ACM International Conference on Intelligent User Interfaces, Palo Alto, CA. 2011</where>
<project>Interactive Knowledge Capture</project>
<project>TellMe</project>
<project>Wings</project>
</publication>
<publication>
<title>A Semantic Framework for Automatic Generation of Computational Workflows Using Distributed Data and Component Catalogs</title>
<url>http://www.isi.edu/~gil/papers/gil-etal-ieee-is-09.pdf</url>
<person>Yolanda Gil</person>
<person>Pedro Antonio Gonzalez-Calero</person>
<person>Jihie Kim</person>
<person>Joshua Moody</person>
<person>Varun Ratnakar</person>
<where>Journal of Experimental and Theoretical Artificial Intelligence, 2010</where>
<project>Interactive Knowledge Capture</project>
<project>Wings</project>
</publication>
<publication>
<title>Shortipedia: Aggregating and Curating Semantic Web Data</title>
<url>http://www.isi.edu/~gil/papers/vrandecic-etal-swc10.pdf</url>
<person>Denny Vrandecic</person>
<person>Varun Ratnakar</person>
<person>Markus Krotzsch</person>
<where>Semantic Web Challenge at the International Semantic Web Conference (ISWC), Shanghai, China, 2010</where>
<project>Interactive Knowledge Capture</project>
<project>Shortipedia</project>
</publication>
<publication>
<title>Social Task Networks: Personal and Collaborative Task Formulation and Management in Social Networking Sites.</title>
<url>http://www.isi.edu/~gil/papers/gil-etal-stn-aaaifss10.pdf</url>
<person>Yolanda Gil</person>
<person>Paul Groth</person>
<person>Varun Ratnakar</person>
<where>AAAI Fall Symposium Series on Proactive Assistant Agents, Arlington, VA, November 2010</where>
<project>Interactive Knowledge Capture</project>
<project>Beamer</project>
</publication>
<publication>
<title>Towards the Integration of Programming by Demonstration and Programming by Instruction using Golog.</title>
<url>http://www.isi.edu/~gil/papers/fri-gil-aaai10ws.pdf</url>
<person>Christian Fritz</person>
<person>Yolanda Gil</person>
<where>AAAI Workshop on Plan, Activity, and Intent Recognition (PAIR), Atlanta, GA, July 2010</where>
<project>Interactive Knowledge Capture</project>
<project>TellMe</project>
</publication>
<publication>
<title>Assisting Scientists with Complex Data Analysis Tasks through Semantic Workflows.</title>
<url>http://www.isi.edu/~gil/papers/gil-etal-aaaifss10.pdf</url>
<person>Yolanda Gil</person>
<person>Varun Ratnakar</person>
<person>Christian Fritz</person>
<where>AAAI Fall Symposium Series on Proactive Assistant Agents, Arlington, VA, November 2010</where>
<project>Interactive Knowledge Capture</project>
<project>TellMe</project>
<project>Wings</project>
</publication>
<publication>
<title>Parameterized Specification, Configuration, and Execution of Data-Intensive Scientific Workflows.</title>
<url>http://www.springerlink.com/content/7018358108554094</url>
<person>Vijay Kumar</person>
<person>Tahsin Kurc</person>
<person>Varun Ratnakar</person>
<person>Jihie Kim</person>
<person>Gaurang Mehta</person>
<person>Karan Vahi</person>
<person>Yoonju Lee Nelson</person>
<person>P. Sadayappan</person>
<person>Ewa Deelman</person>
<person>Yolanda Gil</person>
<person>Mary Hall</person>
<person>Joel Saltz</person>
<where>Cluster Computing Journal, Vol 13, 2010</where>
<project>Interactive Knowledge Capture</project>
<project>Wings</project>
</publication>
<publication>
<title>"High Performance Computing and Grid Computing for Integrative Biomedical Research"</title>
<url>http://www.isi.edu/~gil/papers/kurc-et-al-hpc09.pdf</url>
<person>Tahsin Kurc</person>
<person>Shannon Hastings</person>
<person>Vijay Kumar</person>
<person>Stephen Langella</person>
<person>Ashish Sharma</person>
<person>Tony Pan</person>
<person>Scott Oster</person>
<person>David Ervin</person>
<person>Justin Permar</person>
<person>Sivaramakrishnan Narayanan</person>
<person>Yolanda Gil</person>
<person>Ewa Deelman</person>
<person>Mary Hall</person>
<person>Joel Saltz</person>
<where>Journal of High Performance Computing Applications, 2010</where>
<project>Interactive Knowledge Capture</project>
<project>Wings</project>
</publication>
<publication>
<title>"Reasoning about the Appropriate Use of Private Data through Computational Workflows"</title>
<url>http://www.isi.edu/~gil/papers/gil-fritz-aaaisss10.pdf</url>
<person>Yolanda Gil</person>
<person>Christian Fritz</person>
<where>AAAI Spring Symposium on Privacy Management, Stanford, CA, March 23-25, 2010</where>
<project>Interactive Knowledge Capture</project>
<project>Privateer</project>
<project>Wings</project>
</publication>
<publication>
<title>"Parameterized Specification, Configuration, and
Execution of Data-Intensive Scientific Workflows</title>
<url>http://www.isi.edu/ikcap/wings/CLUS-S-09-00149-1.pdf</url>
<person>Vijay S. Kumar</person>
<person>Tahsin Kurc</person>
<person>Varun Ratnakar</person>
<person>Jihie Kim</person>
<person>Gaurang Mehta</person>
<person>Karan Vahi</person>
<person>Yoonju Lee Nelson</person>
<person>P Sadayappan</person>
<person>Ewa Deelman</person>
<person>Yolanda Gil</person>
<person>Mary Hall</person>
<person>Joel Saltz</person>
<where>Cluster Computing Journal, 2010</where>
<project>Interactive Knowledge Capture</project>
<project>Wings</project>
</publication>
<publication>
<title>"Expressive Reusable Workflow Templates"</title>
<url>http://www.isi.edu/ikcap/wings/wings-escience-2009.pdf</url>
<person>Yolanda Gil</person>
<person>Paul Groth</person>
<person>Varun Ratnakar</person>
<person>Christian Fritz</person>
<where>Proceedings of the Fifth IEEE International
Conference on e-Science, 2009</where>
<project>Interactive Knowledge Capture</project>
<project>Wings</project>
</publication>
<publication>
<title>"Workflow Matching Using Semantic Metadata"</title>
<url>http://www.isi.edu/~gil/papers/gil-etal-kcap09.pdf</url>
<person>Yolanda Gil</person>
<person>Jihie Kim</person>
<person>Yolanda Gil</person>
<person>Gonzalo Florez</person>
<person>Varun Ratnakar</person>
<person>Pedro A. Gonzalez Calero</person>
<where>Proceedings of the Fifth International Conference on
Knowledge Capture (K-CAP), 2009</where>
<project>Interactive Knowledge Capture</project>
<project>Wings</project>
</publication>
<publication>
<title>"From Data to Knowledge to Discoveries: Scientific
Workflows and Artificial Intelligence"</title>
<person>Yolanda Gil</person>
<where>Scientific Programming, Volume 17, Number 3,
2009.</where>
<project>Interactive Knowledge Capture</project>
<project>Wings</project>
</publication>
<publication>
<title>"Principles for Interactive Acquisition and Validation
of Workflows"</title>
<person>Yolanda Gil</person>
<person>Jihie Kim</person>
<person>Marc Spraragen</person>
<where>The Journal of Experimental and Theoretical
Artificial Intelligence, 2010</where>
<project>Interactive Knowledge Capture</project>
<project>Wings</project>
</publication>
<publication>
<title>Analyzing the Gap Between Workflows and their Natural Language Descriptions</title>
<url>http://www.isi.edu/~gil/papers/groth-gil-swf09.pdf</url>
<person>Paul Groth</person>
<person>Yolanda Gil</person>
<project>Interactive Knowledge Capture</project>
<project>Wings</project>
<project>TellMe</project>
<where>Proceedings of the IEEE Third International Workshop on Scientific Workflows (SWF), Los Angeles, CA, July 10, 2009</where>
</publication>
<publication>
<title>Scaffolding Instructions to Learn Procedures from Users</title>
<url>http://www.isi.edu/~gil/papers/groth-gil-aaaisss09.pdf</url>
<person>Paul Groth</person>
<person>Yolanda Gil</person>
<project>Interactive Knowledge Capture</project>
<project>Wings</project>
<project>TellMe</project>
<where>AAAI Spring Symposium on Agents that Learn from Human Teachers, Stanford, CA, March 23-25, 2009</where>
</publication>
<publication>
<title>"A Scientific Workflow Construction Command Line"</title>
<url>http://www.isi.edu/~gil/papers/groth-gil-iui09.pdf</url>
<person>Paul Groth</person>
<person>Yolanda Gil</person>
<where>2009 ACM International Conference on Intelligent User
Interfaces (IUI), Sanibel, FL, February 8-11, 2009</where>
<project>Interactive Knowledge Capture</project>
<project>Wings</project>
<project>TellMe</project>
</publication>
<publication>
<title>"Leveraging Social Networking Sites to Acquire Rich Task Structure"</title>
<url>http://www.isi.edu/~gil/papers/gil-etal-ijcaiwikiAI-09.pdf</url>
<person>Yolanda Gil</person>
<person>Paul Groth</person>
<person>Varun Ratnakar</person>
<project>Interactive Knowledge Capture</project>
<project>Beamer</project>
<where>Proceedings of the IJCAI 2009 Workshop on User-Contributed Knowledge and Artificial Intelligence: An Evolving Synergy (WikiAI09), held in conjunction with the Twenty-First International Joint Conference on Artificial Intelligence (IJCAI-09), Pasadena, CA, July 13, 2009</where>
</publication>
<publication>
<title>Automating To-Do Lists for Users: Interpretation of To-Dos for Selecting and Tasking Agents</title>
<url>http://www.isi.edu/~gil/papers/gil-ratnakar-aaai08.pdf</url>
<person>Yolanda Gil</person>
<person>Varun Ratnakar</person>
<project>Interactive Knowledge Capture</project>
<project>Beamer</project>
<where>Proceedings of the Twenty-Third Conference of the Association for the Advancement of Artificial Intelligence (AAAI-08), Chicago, IL, July 13-17, 2008</where>
</publication>
<publication>
<title>Towards Intelligent Assistance for To-Do Lists</title>
<url>http://www.isi.edu/~gil/papers/gil-ratnakar-iui08.pdf</url>
<person>Yolanda Gil</person>
<person>Varun Ratnakar</person>
<project>Interactive Knowledge Capture</project>
<project>Beamer</project>
<where>Proceedings of the 2008 International Conference on Intelligent User Interfaces (IUI-2008), Canary Islands, Spain, January 2008</where>
</publication>
<publication>
<title>Enhancing Interaction with To-Do Lists Using Artificial Assistants</title>
<url>http://www.isi.edu/~gil/papers/BEAM-ToDo-AAAI-SSS07-Final.pdf</url>
<person>Yolanda Gil</person>
<person>Timothy Chklovski</person>
<project>Interactive Knowledge Capture</project>
<project>Beamer</project>
<where>AAAI Spring Symposium on Interaction Challenges for Artificial Assistants, Stanford, CA, March 26-28 2007</where>
</publication>
<publication>
<title>"Principles for Interactive Acquisition and Validation
of Workflows"</title>
<url></url>
<person>Jihie Kim</person>
<person>Yolanda Gil</person>
<person>Marc Spraragen</person>
<project>Interactive Knowledge Capture</project>
<project>KANAL</project>
<project>CAT</project>
<where>Journal of Experimental and Theoretical Artificial
Intelligence</where>
</publication>
<publication>
<title>Determining the Trustworthiness of New Electronic Contracts</title>
<url>http://www.isi.edu/~gil/papers/groth-etal-esaw-10.pdf</url>
<person>Paul Groth</person>
<person>Simon Miles</person>
<person>Sanjay Modgil</person>
<person>Nir Oren</person>
<person>Michael Luck</person>
<person>Yolanda Gil</person>
<project>Interactive Knowledge Capture</project>
<project>MathTrust</project>
<where>Proceedings of the Tenth Annual Workshop on Engineering Societies in the Agents' World, (ESAW-09), Utrecht, The Netherlands, November 18-20, 2009</where>
</publication>
<publication>
<title>Towards Content Trust of Web Resources</title>
<url>http://www.isi.edu/~gil/papers/gil-artz-jws07.pdf</url>
<person>Yolanda Gil</person>
<person>Donovan Artz</person>
<project>Interactive Knowledge Capture</project>
<project>MathTrust</project>
<where>Journal of Web Semantics, 5(4), 2007</where>
</publication>
<publication>
<title>A Survey of Trust in Computer Science and the Semantic Web</title>
<url>http://www.isi.edu/~gil/papers/jws-trust-07.pdf</url>
<person>Donovan Artz</person>
<person>Yolanda Gil</person>
<project>Interactive Knowledge Capture</project>
<project>MathTrust</project>
<where>Journal of Web Semantics, Volume 5, Issue 2, 2007</where>
</publication>
<publication>
<title>Privacy Enforcement in Data Analysis Workflows</title>
<url>http://www.isi.edu/~gil/papers/gil-etal-peas07.pdf</url>
<person>Yolanda Gil</person>
<person>William K. Cheung</person>
<person>Varun Ratnakar</person>
<person>Kai-kin Chan</person>
<project>Interactive Knowledge Capture</project>
<project>MathTrust</project>
<project>Privateer</project>
<where>2007 Workshop on Privacy Enforcement and Accountability with Semantics (PEAS'07), held in conjunction with the Sixth International Semantic Web Conference (ISWC'07) and the Second Asian Semantic Web Conference (ASWC'07), Busan, Korea, November 11-15, 2007</where>
</publication>
<publication>
<title>Towards Privacy Aware Data Analysis Workflows for e-Science</title>
<url>http://www.isi.edu/~gil/papers/cheung-gil-aaai-ses-07.pdf</url>
<person>William Cheung</person>
<person>Yolanda Gil</person>
<project>Interactive Knowledge Capture</project>
<project>MathTrust</project>
<project>Privateer</project>
<where>2007 Workshop on Semantic e-Science (SeS2007), held in conjunction with the Twenty-Second Conference of the Association for the Advancement of Artificial Intelligence (AAAI), Vancouver, British Columbia, Canada, July 22-26, 2007</where>
</publication>
<publication>
<title>"Developing a Meta-Level Problem Solver for Integrated Learners"</title>
<url>http://www.isi.edu/~jihie/papers/Maven-AAAI-metareasoning-wsp-08.pdf</url>
<person>Jihie Kim</person>
<person>Yolanda Gil</person>
<project>Interactive Knowledge Capture</project>
<project>Maven</project>
<where>AAAI Workshop on Metareasoning: Thinking about thinking, 2008</where>
</publication>
<publication>
<title>"Incorporating tutoring principles into interactive
knowledge acquisition"</title>
<url></url>
<person>Jihie Kim</person>
<person>Yolanda Gil</person>
<person>Marc Spraragen</person>
<project>Interactive Knowledge Capture</project>
<project>Maven</project>
<project>SLICK</project>
<project>ECHO</project>
<where>International Journal of Human-Computer Studies Volume
65, Issue 10, October 2007, Pages 852-872</where>
</publication>
<publication>
<title>"Provenance Trails in the Wings/Pegasus Workflow
System"</title>
<url>http://www.isi.edu/~gil/papers/CCPE07-Provenance.pdf</url>
<person>Jihie Kim</person>
<person>Ewa Deelman</person>
<person>Yolanda Gil</person>
<person>Gaurang Mehta</person>
<person>Varun Ratnakar</person>
<project>Interactive Knowledge Capture</project>
<project>Wings</project>
<where>Concurrency and Computation: Practice and Experience,
Special Issue on the First Provenance Challenge, Vol 20, Issue
5, April 2008</where>
</publication>
<publication>
<title>"Scientific Software as Workflows: From Discovery to
Distribution"</title>
<person>David Woollard</person>
<person>Nenad Medvidovic</person>
<person>Yolanda Gil</person>
<person>Chris Mattmann</person>
<where>IEEE Software, Special Issue on Developing Scientific
Software, July/August 2008</where>
<project>Interactive Knowledge Capture</project>
<project>Wings</project>
</publication>
<publication>
<title>"Designing and Parameterizing a Workflow for
Optimization: A Case Study in Biomedical Imaging."</title>
<person>Vijay Kumar</person>
<person>Mary Hall</person>
<person>Jihie Kim</person>
<person>Yolanda Gil</person>
<person>Tahsin Kurc</person>
<person>Ewa Deelman</person>
<person>Joel Saltz</person>
<where>Proceedings of NSF Workshop on Next Generation Software,
held in conjunction with the IEEE International Symposium on
Parallel and Distributed Processing (IPDPS-08), Miami, FL,
April 2008</where>
<project>Interactive Knowledge Capture</project>
<project>Wings</project>
</publication>
<publication>
<title>"Self-Configuring Applications for Heterogeneous
Systems: Program Composition and Optimization Using Cognitive
Techniques"</title>
<person>Mary Hall</person>
<person>Yolanda Gil</person>
<person>Robert Lucas</person>
<where>Proceedings of the IEEE, Special Issue on Cutting-Edge
Computing: Using New Commodity Architectures, Volume 96, Issue
5, May 2008</where>
<project>Interactive Knowledge Capture</project>
<project>Wings</project>
</publication>
<publication>
<title>"Examining the Challenges of Scientific
Workflows"</title>
<person>Yolanda Gil</person>
<person>Ewa Deelman</person>
<person>Mark Ellisman</person>
<person>Thomas Fahringer</person>
<person>Geoffrey Fox</person>
<person>Dennis Gannon</person>
<person>Carole Goble</person>
<person>Miron Livny</person>
<person>Luc Moreau</person>
<person>Jim Myers</person>
<where>IEEE Computer, vol. 40, no. 12, pp. 24-32, December,
2007</where>
<project>Interactive Knowledge Capture</project>
<project>Wings</project>
</publication>
<publication>
<title>"Wings for Pegasus: Creating Large-Scale Scientific
Applications Using Semantic Representations of Computational
Workflows"</title>
<url>http://www.isi.edu/~gil/papers/gil-etal-iaai07.pdf</url>
<person>Yolanda Gil</person>
<person>Varun Ratnakar</person>
<person>Ewa Deelman</person>
<person>Gaurang Mehta</person>
<person>Jihie Kim</person>
<project>Interactive Knowledge Capture</project>
<project>Wings</project>
<where>Proceedings of the 19th Annual Conference on Innovative
Applications of Artificial Intelligence (IAAI), Vancouver,
British Columbia, Canada, July 22-26, 2007</where>
</publication>
<publication>
<title>"Workflow Composition"</title>
<url>
http://www.isi.edu/~gil/papers/workflow-bookchapter-06.pdf</url>
<person>Yolanda Gil</person>
<project>Interactive Knowledge Capture</project>
<project>Wings</project>
<where>In Workflows for e-Science, D. Gannon, E. Deelman, M.
Shields, I. Taylor (Eds), Springer Verlag, 2006</where>
</publication>
<publication>
<title>"Managing Large-Scale Scientific Workflows in
Distributed Environments: Experiences and Challenges"</title>
<url>
http://www.isi.edu/~gil/papers/deelman-gil-escience06.pdf</url>
<person>Ewa Deelman</person>
<person>Yolanda Gil</person>
<project>Interactive Knowledge Capture</project>
<project>Wings</project>
<where>Proceedings of the Workshop on Scientific Workflows and
Business Workflow Standards in e-Science, The Second IEEE
International Conference on e-Science and Grid Computing,
Amsterdam, The Netherlands, December 4-6, 2006</where>
</publication>
<publication>
<title>"Wings for Pegasus: A Semantic Approach to Creating Very
Large Scientific Workflows"</title>
<url>http://www.isi.edu/~gil/papers/wings-owl06.pdf</url>
<person>Yolanda Gil</person>
<person>Varun Ratnakar</person>
<person>Ewa Deelman</person>
<person>Marc Spraragen</person>
<person>Jihie Kim</person>
<project>Interactive Knowledge Capture</project>
<project>Wings</project>
<where>Proceedings of the OWL: Experiences and Directions 2006
(OWLED-06), Athens, GA, November 10-11, 2006</where>
</publication>
<publication>
<title>"Semantic Metadata Generation for Large Scientific
Workflows"</title>
<url>
http://www.isi.edu/~gil/papers/kim-gil-ratnakar-iswc06.pdf</url>
<person>Jihie Kim</person>
<person>Yolanda Gil</person>
<person>Varun Ratnakar</person>
<project>Interactive Knowledge Capture</project>
<project>Wings</project>
<where>Proceedings of the Fifth International Semantic Web
Conference (ISWC-06), Athens, GA, November 5-9, 2006</where>
</publication>
<publication>
<title>"On Agents and Grids: Creating the Fabric of a New
Generation of Distributed Intelligent Systems"</title>
<url>http://www.isi.edu/~gil/papers/gil-jws06.pdf</url>
<person>Yolanda Gil</person>
<project>Interactive Knowledge Capture</project>
<project>Wings</project>
<where>Journal of Web Semantics, Volume 4, Issue 2, June
2006</where>
</publication>
<publication>
<title>"Workflow Composition"</title>
<url>
http://www.isi.edu/~gil/papers/workflow-bookchapter-06.pdf</url>
<person>Yolanda Gil</person>
<project>Interactive Knowledge Capture</project>
<project>Wings</project>
<where>"Workflows for e-Science", D. Gannon, E. Deelman, M.
Shields, I.Taylor (Eds)</where>
</publication>
<publication>
<title>"Semantic Metadata Generation for Large Scientific
Workflows"</title>
<url>
http://www.isi.edu/ikcap/wings/papers/Wings-metadata-ISWC-2006.pdf</url>
<person>Jihie Kim</person>
<person>Yolanda Gil</person>
<person>Varun Ratnakar</person>
<project>SCEC/IT</project>
<project>Interactive Knowledge Capture</project>
<project>Wings</project>
<where>International Semantic Web Conference, ISWC-2006,
Athens, Georgia, USA</where>
</publication>
<publication>
<title>"Wings for Pegasus: A Semantic Approach to Creating Very
Large Scientific Workflows"</title>
<url>
http://www.isi.edu/ikcap/wings/papers/Wings-OWL-2006.pdf</url>