ERROR: Error with running SPAdes: == Error == system call for: finished abnormally, OS return value: 21

[VaninaTonzo]

get_org.log.txt
get_mitogenomes.txt
I am having this error message when I run GetOrganelle. I use the dependencies the cluster where I work on and till last week tjere where no problems when using spades...

Do you have any idea why this is happening?

Thanks in advance,

Vanina

[Kinggerm]

I believe it is because of the sample or the seed database.
There are too few reads input for SPAdes. You can confirm this by checking the SPAdes log file.

You may try:

1. Using a more relevant seed database and label database. If a similar issue happens again, there are probably not enough mt reads in the dataset. So you have to switch to the second option.
2. Add more reads.