From a089bfffe54162728372872c0070f71f477441bc Mon Sep 17 00:00:00 2001 From: Kinggerm Date: Sat, 20 Feb 2021 17:17:35 +0800 Subject: [PATCH] update README.md with embplant_mt notes --- README.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 1ac26a3..1a84839 100644 --- a/README.md +++ b/README.md @@ -117,8 +117,8 @@ or in a slow and memory-economic way: To assembly Embryophyta plant mitochondria (usually you need more than 5G raw data): get_organelle_from_reads.py -1 forward.fq -2 reverse.fq -o mitochondria_output -R 50 -k 21,45,65,85,105 -P 1000000 -F embplant_mt - # 1. embplant_mt mode was not tested in the GetOrganelle paper - # 2. until further updates, the FASTA output of plant mitochondria genome of numerous repeats may be error-prone, please use the FASTG file for downstream manual processing. + # 1. please use the FASTG file as the final output for downstream manual processing. until further updates, the FASTA output of plant mitochondria genome of numerous repeats may be error-prone + # 2. embplant_mt mode was not tested in the GetOrganelle paper due to the complexity of plant mitogenomes and the defects of short reads To assembly Embryophyta plant nuclear ribosomal RNA (18S-ITS1-5.8S-ITS2-26S):