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Model dfba_test_model_RateLaw_Units_cannot_be_defined.xlsx has good rate units, '1 / second' or 's^-1'.
But wc_lang.io.Reader().run('dfba_test_model_RateLaw_Units_cannot_be_defined.xlsx', validate=True) reports a validation error:
E ValueError: The model cannot be loaded because it fails to validate:
E RateLaw:
E r1-backward:
E 'units':
E Units must be defined
E r1-forward:
E 'units':
E Units must be defined
E r2-backward:
E 'units':
E Units must be defined
E r2-forward:
E 'units':
E Units must be defined
E r3-forward:
E 'units':
E Units must be defined
E r4-forward:
E 'units':
E Units must be defined
…tions were split by SplitReversibleReactionsTransform in PrepForWcSimTransform; enables great simplification of determine_bounds(); simplify by not bounding individual reactions to stop species populations from going negative in the next time step -- just use separate constraints that prevent this; ensure that all reactions are irreversible; unify treatment of pseudo-reactions; set correct reversible attributes for rxns in dfba_test_model.xlsx; skip exception from Validator errors until KarrLab/wc_lang#142 is resolved for fixtures/dfba_test_model.xlsx; simplify by making/using dict. of all wc_lang.DfbaObjReactions; stop warning when exchange reactions don't have the form 's ->'
Model
dfba_test_model_RateLaw_Units_cannot_be_defined.xlsx
has good rate units, '1 / second' or 's^-1'.But
wc_lang.io.Reader().run('dfba_test_model_RateLaw_Units_cannot_be_defined.xlsx', validate=True)
reports a validation error:Using current version of
wc_lang
.Cannot find a way to satisfy the validation. Possible, but unlikely, hint: Excel tip says "Rate units", not "Units".
dfba_test_model_RateLaw_Units_cannot_be_defined.xlsx
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