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possible incorrect handling of tRNA genes #161

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EugeneEA opened this issue Jun 21, 2023 · 0 comments
Open

possible incorrect handling of tRNA genes #161

EugeneEA opened this issue Jun 21, 2023 · 0 comments
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@kmoad

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@EugeneEA
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Hi, I stmbled upon a problem, that variant which falls into tRNA gene do not get prioretisation above other "non coding" variants
rs199474657 for example

image

it is a SNP in a gene MT-TL1 (https://www.ncbi.nlm.nih.gov/snp/rs199474657)
but in the "Gene" column there is MT-TI, and it seems that because of "noncoding" nature of all variants in "ALL_mapping filed" correct gene does not get prioretisation.

Best, Eugene
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@kmoad @EugeneEA @skanderson @mlarsen5