UniProt

[jwehr618]

Hello,

You would be able to pull from Unitprot the domain information in addition to what is already pulled in the OC output. What we would need is if there is a domain, the name of the domain, and the amino acid position. This is to determine whether the variant annotated falls in a domain or not. I work with the command line output, so would be great for it to be in the Excel output.

Thanks

[kmoad]

We are working on adding this.

[kmoad]

We have added a new annotator uniprot_domain that will return the domain a variant is found in. It is based on the domain bed file from https://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/genome_annotation_tracks/UP000005640_9606_beds/