Merge pull request #31 from KVSlab/johannr/add-ci-and-tests

Add tests and CI

.flake8

@@ -2,5 +2,5 @@
 # https://github.com/PyCQA/flake8/issues/234
 [flake8]
 ignore = F405, F403, W504, W503
-exclude = __init__.py, build
+exclude = __init__.py, build, postprocessing_fenics, postprocessing_mesh, postprocessing_h5py
 max-line-length = 120

.github/workflows/check_and_test_package.yml

@@ -0,0 +1,125 @@
+# Borrowed from VaMPy
+# Original Workflow File: https://github.com/KVSlab/VaMPy/blob/master/.github/workflows/check_and_test_package.yml
+# Description: Check and test the code of FSIPy
+
+name: CI
+
+on:
+  push:
+    # The CI is executed on every push on every branch
+    branches:
+      - master
+  pull_request:
+    # The CI is executed on every pull request to the main branch
+    branches:
+      - master
+  schedule:
+    # The CI is executed every day at 4am
+    - cron: "0 4 * * *"
+
+env:
+  CACHE_NUMBER: 0 # Increase to reset cache
+
+jobs:
+  check-code:
+    name: Check code
+    runs-on: ubuntu-latest
+
+    continue-on-error: true
+
+    steps:
+      - uses: actions/setup-python@v4
+        with:
+          python-version: '3.10'
+
+      - name: Upgrade pip and setuptools
+        run: python3 -m pip install pip setuptools --upgrade
+
+      - name: Checkout code
+        uses: actions/checkout@v3
+
+      - name: Install types-paramiko
+        run: python3 -m pip install types-paramiko
+
+      - name: Install FSIPy
+        run: python3 -m pip install .[test]
+
+      - name: Check code with Flake8
+        run: python3 -m flake8
+
+      - name: Check code with mypy
+        run: python3 -m mypy
+
+  test-code:
+    needs: check-code
+    strategy:
+      matrix:
+        include:
+          - os: ubuntu-latest
+            label: linux-64
+            prefix: /usr/share/miniconda3/envs/fsipy
+          - os: macos-latest
+            label: osx-64
+            prefix: /Users/runner/miniconda3/envs/fsipy
+
+    name: Test FSIPy on ${{ matrix.label }}
+    runs-on: ${{ matrix.os }}
+
+    # https://github.com/marketplace/actions/setup-miniconda#use-a-default-shell
+    defaults:
+      run:
+        shell: bash -l {0}
+
+    steps:
+      - uses: actions/setup-python@v4
+        with:
+          python-version: '3.10'
+
+      - name: Checkout code
+        uses: actions/checkout@v3
+
+      - name: Upgrade pip and setuptools
+        run: |
+          python3 -m pip install pip setuptools --upgrade
+
+      # See: https://github.com/marketplace/actions/setup-miniconda
+      - name: Setup Mambaforge
+        uses: conda-incubator/setup-miniconda@v2
+        with:
+          miniforge-variant: Mambaforge
+          miniforge-version: latest
+          channels: conda-forge
+          activate-environment: fsipy
+          use-mamba: true
+
+      - name: Set cache date
+        run: echo "DATE=$(date +'%Y%m%d')" >> $GITHUB_ENV
+
+      - uses: actions/cache@v2
+        with:
+          path: ${{ matrix.prefix }}
+          key: ${{ matrix.label }}-conda-${{ hashFiles('environment.yml') }}-${{ env.DATE }}-${{ env.CACHE_NUMBER }}
+        id: cache
+
+      - name: Update environment
+        run: mamba env update -n fsipy -f environment.yml
+        if: steps.cache.outputs.cache-hit != 'true'
+
+      - name: Install FSIPy
+        run: python3 -m pip install .[test]
+
+      - name: Run tests
+        run: python3 -m pytest tests
+
+      # FIXME: Uncomment these lines later when we have decided on a package name
+      #- name: Upload coverage report to codecov
+      #  if: matrix.os == 'ubuntu-latest'
+      #  uses: codecov/codecov-action@v3
+      #  with:
+      #    token: ${{ secrets.CODECOV_TOKEN }}
+      #    files: ./coverage.xml
+      #    fail_ci_if_error: false
+      #    verbose: true
+
+# Original workflow authored by Henrik Kjeldsberg
+# Source Repository: https://github.com/KVSlab/VaMPy/

environment.yml

@@ -13,7 +13,5 @@ dependencies:
   - python >=3.8
   - git
   - pip:
-      - cppimport
-      - git+https://github.com/mikaem/Oasis
       - git+https://github.com/KVSlab/VaMPy.git
       - git+https://github.com/KVSlab/turtleFSI.git