Add common simulation functions #46
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # Borrowed from VaMPy | |
| # Original Workflow File: https://github.com/KVSlab/VaMPy/blob/master/.github/workflows/check_and_test_package.yml | |
| # Description: Check and test the code of FSIPy | |
| name: CI | |
| on: | |
| push: | |
| # The CI is executed on every push on every branch | |
| branches: | |
| - master | |
| pull_request: | |
| # The CI is executed on every pull request to the main branch | |
| branches: | |
| - master | |
| schedule: | |
| # The CI is executed every day at 4am | |
| - cron: "0 4 * * *" | |
| env: | |
| CACHE_NUMBER: 0 # Increase to reset cache | |
| jobs: | |
| check-code: | |
| name: Check code | |
| runs-on: ubuntu-latest | |
| continue-on-error: true | |
| steps: | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.10' | |
| - name: Upgrade pip and setuptools | |
| run: python3 -m pip install pip setuptools --upgrade | |
| - name: Checkout code | |
| uses: actions/checkout@v3 | |
| - name: Install types-paramiko | |
| run: python3 -m pip install types-paramiko | |
| - name: Install FSIPy | |
| run: python3 -m pip install .[test] | |
| - name: Check code with Flake8 | |
| run: python3 -m flake8 | |
| - name: Check code with mypy | |
| run: python3 -m mypy | |
| test-code: | |
| needs: check-code | |
| strategy: | |
| matrix: | |
| include: | |
| - os: ubuntu-latest | |
| label: linux-64 | |
| prefix: /usr/share/miniconda3/envs/fsipy | |
| - os: macos-latest | |
| label: osx-64 | |
| prefix: /Users/runner/miniconda3/envs/fsipy | |
| name: Test FSIPy on ${{ matrix.label }} | |
| runs-on: ${{ matrix.os }} | |
| # https://github.com/marketplace/actions/setup-miniconda#use-a-default-shell | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.10' | |
| - name: Checkout code | |
| uses: actions/checkout@v3 | |
| - name: Upgrade pip and setuptools | |
| run: | | |
| python3 -m pip install pip setuptools --upgrade | |
| # See: https://github.com/marketplace/actions/setup-miniconda | |
| - name: Setup Mambaforge | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| channels: conda-forge | |
| activate-environment: fsipy | |
| use-mamba: true | |
| - name: Set cache date | |
| run: echo "DATE=$(date +'%Y%m%d')" >> $GITHUB_ENV | |
| - uses: actions/cache@v2 | |
| with: | |
| path: ${{ matrix.prefix }} | |
| key: ${{ matrix.label }}-conda-${{ hashFiles('environment.yml') }}-${{ env.DATE }}-${{ env.CACHE_NUMBER }} | |
| id: cache | |
| - name: Update environment | |
| run: mamba env update -n fsipy -f environment.yml | |
| if: steps.cache.outputs.cache-hit != 'true' | |
| - name: Install FSIPy | |
| run: python3 -m pip install .[test] | |
| - name: Run tests | |
| run: python3 -m pytest tests | |
| # FIXME: Uncomment these lines later when we have decided on a package name | |
| #- name: Upload coverage report to codecov | |
| # if: matrix.os == 'ubuntu-latest' | |
| # uses: codecov/codecov-action@v3 | |
| # with: | |
| # token: ${{ secrets.CODECOV_TOKEN }} | |
| # files: ./coverage.xml | |
| # fail_ci_if_error: false | |
| # verbose: true | |
| # Original workflow authored by Henrik Kjeldsberg | |
| # Source Repository: https://github.com/KVSlab/VaMPy/ |