create_documentation.yml

name: create-documentation
on: [workflow_dispatch, push]

jobs: 
  create-documentation: 
    runs-on: ubuntu-latest

    strategy:
      fail-fast: false
      matrix:
        config:
         - name: "ubuntu-20"
           os: ubuntu-20.04
           cxx: "g++-9"
           cc: "gcc-9"
           fc: "gfortran-9"
           swig_builtin: "Off" #uses swig 4.0.1
    
    # define steps to take
    steps: 
      - name: Checkout repository
        uses: actions/checkout@v3
      - name: Python install
        uses: actions/setup-python@v4
        with:
          python-version: '3.9'
          cache: 'pip' # caching pip dependencies
      - name: Prerequirements
        run: |
          sudo apt-get update
          sudo apt-get install libmuparser-dev libhdf5-serial-dev libomp5 libomp-dev libfftw3-dev libcfitsio-dev lcov doxygen graphviz
          pip install -r doc/pages/example_notebooks/requirements.txt # load requrements for notebooks
          pip install sphinx sphinx_rtd_theme m2r2
      - name: Set up the build
        env:
          CXX: ${{ matrix.config.cxx }}
          CC: ${{ matrix.config.cc }}
          FC: ${{ matrix.config.fc }}
        run: |
          mkdir build
          cd build
          cmake .. -DCMAKE_INSTALL_PREFIX=$HOME/.local \
            -DENABLE_PYTHON=True -DENABLE_TESTING=ON -DENABLE_SWIG_BUILTIN=${{ matrix.config.swig_builtin }} \
            -DSIMD_EXTENSIONS=native -DBUILD_DOC=True -DENABLE_COVERAGE=True
      - name: Build CRPropa
        run: |
          cd build
          make -j
      - name: run test
        run: | 
          cd build
          make test
        continue-on-error: true
      - name: coverage report
        run: |
          cd build
          make coverage
          tar -zcvf coverage.tar.gz coverageReport
      - name: build documentation
        run: |
          cd build
          make doc
          tar -zcvf documentation.tar.gz doc
      - name: archive documentation
        uses: actions/upload-artifact@v3
        with:
          name: "documentation"
          path: | 
            build/documentation.tar.gz
            build/coverage.tar.gz