Compatibility with phy

If you wish to manually curate you units with phy, bombcell can assist you by displaying quality metrics for each unit in the ClusterView view. To enable this, set param.saveAsTSV to 1. Bombcell will then save a tsv file per quality metric in the param.ephysKilosortPath path. This needs to be the same path as where all your kilosort output paths are saved. Note that this just loads pre-calculated metrics, so any units you split or merge will not have quality metrics displayed.

All the columns can get crowded. We recommend removing some of phy's default ones if you don't use them (for instance, maybe you don't use some of these: amp, sh, ch, ContamPct, KSlabel). To do this, you can take a look at the phyPlugins here - in particular the plugin removeColumnsPlugin.