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Classifying cell types

Julie Fabre edited this page Nov 29, 2023 · 3 revisions

Bombcell can currently classify:

  • striatal units as in Peters et al., Nature 2021. To do so run (1) bombcell quality metrics, then (2) bombcell's ephys paramaters, inputing 'striatum' as region in the function [ephysProperties, unitClassif] = bc_ephysPropertiesPipeline(ephysKilosortPath, savePath, rerunEP, region);
  • cortical units as in [Peters et al., Cell Reports 2022](https://www.cell.com/cell-reports/fulltext/S2211-1247(22)01337-7. To do so run (1) bombcell quality metrics, then (2) bombcell's ephys paramaters, inputing 'cortex' as region in the function [ephysProperties, unitClassif] = bc_ephysPropertiesPipeline(ephysKilosortPath, savePath, rerunEP, region);