run_data.sh

#!/usr/bin/bash
echo "start"
X509_USER_PROXY=/afs/cern.ch/user/g/gdamolin/private/x509up_u151129
CMSSW=/afs/cern.ch/user/g/gdamolin/CMSSW_12_4_1_patch1/src
usage() { echo "Usage: $0 [-i <input file> ] [-o <outpath>] [-f first_dataset?]" 1>&2; exit 1; }
while getopts "i:o:f:" opt; do
    case "$opt" in
        i) INFILE=$OPTARG
            ;;
        o) OUTPATH=$OPTARG
            ;;
        f) FIRST_DATA=$OPTARG
            ;;
        *)
            echo "Invalid argument $OPTARG" 1>&2
            exit 1
    esac
done


EXE="/afs/cern.ch/user/g/gdamolin/Johan/TTbar/Data_Analysis"
outdir="/afs/cern.ch/user/g/gdamolin/Johan/Data"
filename=$INFILE
filestring=$(echo $filename | sed 's|\(^.*/\)\([a-z,A-Z,0-9,-]*\).root$|\2|')
ofilename=${outdir}/$filestring"_MA".root
FIRSTDATASET=$FIRST_DATA

cd $CMSSW
eval `scram r -sh`
export X509_USER_PROXY=$X509_USER_PROXY
cd -

echo "CMSSW_BASE is now set to $CMSSW_BASE"
echo "PROXY is now set to $X509_USER_PROXY"
echo "executing script as:"
echo "${EXE} $filename $ofilename ${FIRSTDATASET}"
${EXE} $filename $ofilename ${FIRSTDATASET} || {
    echo "${EXE} failed with file ${filename}, removing intermediate file" 1>&2; 
    if [[ -f $ofilename ]]; then
        rm $ofilename
    fi
    exit 1
}
mv $ofilename ${OUTPATH}/${filestring}_MA.root