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New BED colouring option for scores that are pvalues #186

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iromeo opened this issue Jun 14, 2023 · 1 comment
Open

New BED colouring option for scores that are pvalues #186

iromeo opened this issue Jun 14, 2023 · 1 comment
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usability Issue Not a bug, but inconvenient to use
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@iromeo
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iromeo commented Jun 14, 2023

For tracks with pvalues - the less value, the better, so most confident peaks will be transparent + we interested in -log(pvalue). Let's support:

  • -log(x), where if 'x' is zero, we will replace it with minimal absolute 'x_i' value

otherwise we have to always update the track and add some log columns into it.

@iromeo iromeo added the usability Issue Not a bug, but inconvenient to use label Jun 14, 2023
@iromeo iromeo added this to the JBR 1.1 milestone Sep 23, 2023
@iromeo iromeo self-assigned this Jan 26, 2024
@iromeo
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iromeo commented Jan 26, 2024

E.g. could be used for #251 feature & coloring that makes best pvalues visible, not transparent

@iromeo iromeo assigned Xewar313 and unassigned iromeo Feb 9, 2024
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