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github actions failing on repository forks #8

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krosenfeld-IDM opened this issue Nov 22, 2024 · 0 comments
Open

github actions failing on repository forks #8

krosenfeld-IDM opened this issue Nov 22, 2024 · 0 comments

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@krosenfeld-IDM
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krosenfeld-IDM commented Nov 22, 2024 •
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If I enable the github actions on my laser-measles fork they fail very quickly (even after making the linter happy). For example on regular build and test:

Run tox -e docs -v
.pkg: find interpreter for spec PythonSpec(major=3, minor=11)
.pkg: proposed PythonInfo(spec=CPython3.11.10.final.0-64, exe=/opt/hostedtoolcache/Python/3.11.10/x64/bin/python, platform=linux, version='3.11.10 (main, Sep  9 2024, 03:20:25) [GCC 11.4.0]', encoding_fs_io=utf-8-utf-8)
.pkg: find interpreter for spec PythonSpec(path=/opt/hostedtoolcache/Python/3.11.10/x64/bin/python)
.pkg: proposed PythonInfo(spec=CPython3.11.10.final.0-64, exe=/opt/hostedtoolcache/Python/3.11.10/x64/bin/python, platform=linux, version='3.11.10 (main, Sep  9 2024, 03:20:25) [GCC 11.4.0]', encoding_fs_io=utf-8-utf-8)
docs: create virtual environment via CPython3Posix(dest=/home/runner/work/laser-measles/laser-measles/.tox/docs, clear=False, no_vcs_ignore=False, global=False)
docs: add seed packages via FromAppData(download=False, pip=bundle, setuptools=bundle, wheel=bundle, via=copy, app_data_dir=/home/runner/.local/share/virtualenv)
docs: add activators for Bash, CShell, Fish, Nushell, PowerShell, Python
docs: install_deps> python -I -m pip install -r /home/runner/work/laser-measles/laser-measles/docs/requirements.txt
docs: exit 0 (4.72 seconds) /home/runner/work/laser-measles/laser-measles> python -I -m pip install -r /home/runner/work/laser-measles/laser-measles/docs/requirements.txt pid=1781
.pkg: create virtual environment via CPython3Posix(dest=/home/runner/work/laser-measles/laser-measles/.tox/.pkg, clear=False, no_vcs_ignore=False, global=False)
.pkg: add seed packages via FromAppData(download=False, pip=bundle, setuptools=bundle, wheel=bundle, via=copy, app_data_dir=/home/runner/.local/share/virtualenv)
.pkg: add activators for Bash, CShell, Fish, Nushell, PowerShell, Python
.pkg: install_requires> python -I -m pip install 'setuptools>=61.0'
.pkg: exit 0 (0.89 seconds) /home/runner/work/laser-measles/laser-measles> python -I -m pip install 'setuptools>=61.0' pid=1799
.pkg: _optional_hooks> python /opt/hostedtoolcache/Python/3.11.10/x64/lib/python3.11/site-packages/pyproject_api/_backend.py True setuptools.build_meta
.pkg: exit None (0.24 seconds) /home/runner/work/laser-measles/laser-measles> python /opt/hostedtoolcache/Python/3.11.10/x64/lib/python3.11/site-packages/pyproject_api/_backend.py True setuptools.build_meta pid=1807
.pkg: get_requires_for_build_sdist> python /opt/hostedtoolcache/Python/3.11.10/x64/lib/python3.11/site-packages/pyproject_api/_backend.py True setuptools.build_meta
.pkg: exit None (0.36 seconds) /home/runner/work/laser-measles/laser-measles> python /opt/hostedtoolcache/Python/3.11.10/x64/lib/python3.11/site-packages/pyproject_api/_backend.py True setuptools.build_meta pid=1810
.pkg: get_requires_for_build_editable> python /opt/hostedtoolcache/Python/3.11.10/x64/lib/python3.11/site-packages/pyproject_api/_backend.py True setuptools.build_meta
.pkg: exit None (0.18 seconds) /home/runner/work/laser-measles/laser-measles> python /opt/hostedtoolcache/Python/3.11.10/x64/lib/python3.11/site-packages/pyproject_api/_backend.py True setuptools.build_meta pid=1813
.pkg: freeze> python -m pip freeze --all
.pkg: exit 0 (0.21 seconds) /home/runner/work/laser-measles/laser-measles> python -m pip freeze --all pid=1816
.pkg: pip==24.3.1,setuptools==75.2.0,wheel==0.44.0
.pkg: build_editable> python /opt/hostedtoolcache/Python/3.11.10/x64/lib/python3.11/site-packages/pyproject_api/_backend.py True setuptools.build_meta
.pkg: exit None (0.57 seconds) /home/runner/work/laser-measles/laser-measles> python /opt/hostedtoolcache/Python/3.11.10/x64/lib/python3.11/site-packages/pyproject_api/_backend.py True setuptools.build_meta pid=1819
docs: install_package_deps> python -I -m pip install geopandas 'laser-core@ git+https://github.com/InstituteforDiseaseModeling/[email protected]'
docs: exit 0 (20.37 seconds) /home/runner/work/laser-measles/laser-measles> python -I -m pip install geopandas 'laser-core@ git+https://github.com/InstituteforDiseaseModeling/[email protected]' pid=1828
docs: install_package> python -I -m pip install --force-reinstall --no-deps /home/runner/work/laser-measles/laser-measles/.tox/.tmp/package/1/laser_measles-0.6.0-0.editable-cp311-cp311-linux_x86_64.whl
docs: exit 0 (0.46 seconds) /home/runner/work/laser-measles/laser-measles> python -I -m pip install --force-reinstall --no-deps /home/runner/work/laser-measles/laser-measles/.tox/.tmp/package/1/laser_measles-0.6.0-0.editable-cp311-cp311-linux_x86_64.whl pid=1897
docs: freeze> python -m pip freeze --all
docs: exit 0 (0.25 seconds) /home/runner/work/laser-measles/laser-measles> python -m pip freeze --all pid=1906
docs: alabaster==1.0.0,babel==2.16.0,certifi==2024.8.30,charset-normalizer==3.4.0,click==8.1.7,contourpy==1.3.1,cycler==0.[12](https://github.com/krosenfeld-IDM/laser-measles/actions/runs/11977640624/job/33395969743#step:7:13).1,docutils==0.21.2,fonttools==4.55.0,geopandas==1.0.1,idna==3.10,imagesize==1.4.1,iniconfig==2.0.0,Jinja2==3.1.4,kiwisolver==1.4.7,laser-core @ git+https://github.com/InstituteforDiseaseModeling/laser.git@de9a20770ff6d04fc627143b34a360d71b45e526,laser-measles @ file:///home/runner/work/laser-measles/laser-measles/.tox/.tmp/package/1/laser_measles-0.6.0-0.editable-cp311-cp311-linux_x86_64.whl#sha256=85428ab485682b0bb1a041608b6fee1a5f56d6d7982bde5d2ee[13](https://github.com/krosenfeld-IDM/laser-measles/actions/runs/11977640624/job/33395969743#step:7:14)e0009b86514,llvmlite==0.43.0,MarkupSafe==3.0.2,matplotlib==3.9.2,numba==0.60.0,numpy==1.26.4,packaging==24.2,pandas==2.2.3,pillow==11.0.0,pip==24.3.1,pluggy==1.5.0,polars==1.14.0,Pygments==2.18.0,pyogrio==0.10.0,pyparsing==3.2.0,pyproj==3.7.0,pytest==8.3.3,python-dateutil==2.9.0.post0,pytz==2024.2,requests==2.32.3,setuptools==75.2.0,shapely==2.0.6,six==1.16.0,snowballstemmer==2.2.0,Sphinx==8.1.3,sphinx-rtd-theme==3.0.2,sphinxcontrib-applehelp==2.0.0,sphinxcontrib-devhelp==2.0.0,sphinxcontrib-htmlhelp==2.1.0,sphinxcontrib-jquery==4.1,sphinxcontrib-jsmath==1.0.1,sphinxcontrib-qthelp==2.0.0,sphinxcontrib-serializinghtml==2.0.0,tqdm==4.67.0,tzdata==2024.2,urllib3==2.2.3,wheel==0.44.0
docs: commands[0]> sphinx-apidoc -f -o docs/reference --module-first src/laser_measles
docs: exit 0 (0.22 seconds) /home/runner/work/laser-measles/laser-measles> sphinx-apidoc -f -o docs/reference --module-first src/laser_measles pid=1911
docs: commands[1]> sphinx-build -E -b doctest docs dist/docs
Running Sphinx v8.1.3
loading translations [en]... done
making output directory... done
[autosummary] generating autosummary for: authors.rst, changelog.rst, contributing.rst, index.rst, installation.rst, readme.rst, reference/laser_measles.generic.rst, reference/laser_measles.nigeria.rst, reference/laser_measles.rst, reference/modules.rst, usage.rst
building [mo]: targets for 0 po files that are out of date
writing output... 
building [doctest]: targets for 11 source files that are out of date
updating environment: [new config] 11 added, 0 changed, 0 removed
reading sources... [  9%] authors
reading sources... [ 18%] changelog
reading sources... [ 27%] contributing
reading sources... [ 36%] index
reading sources... [ 45%] installation
reading sources... [ 55%] readme
reading sources... [ 64%] reference/laser_measles
reading sources... [ 73%] reference/laser_measles.generic
reading sources... [ 82%] reference/laser_measles.nigeria
reading sources... [ 91%] reference/modules
reading sources... [100%] usage

looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
copying assets... 
copying assets: done
running tests...

Doctest summary
===============
    0 tests
    0 failures in tests
    0 failures in setup code
    0 failures in cleanup code
build succeeded.

Testing of doctests in the sources finished, look at the results in dist/docs/output.txt.
docs: exit 0 (16.95 seconds) /home/runner/work/laser-measles/laser-measles> sphinx-build -E -b doctest docs dist/docs pid=1916
docs: commands[2]> sphinx-build -E -b html docs dist/docs
Running Sphinx v8.1.3
loading translations [en]... done
[autosummary] generating autosummary for: authors.rst, changelog.rst, contributing.rst, index.rst, installation.rst, readme.rst, reference/laser_measles.generic.rst, reference/laser_measles.nigeria.rst, reference/laser_measles.rst, reference/modules.rst, usage.rst
building [mo]: targets for 0 po files that are out of date
writing output... 
building [html]: targets for 11 source files that are out of date
updating environment: [new config] 11 added, 0 changed, 0 removed
reading sources... [  9%] authors
reading sources... [ 18%] changelog
reading sources... [ 27%] contributing
reading sources... [ 36%] index
reading sources... [ 45%] installation
reading sources... [ 55%] readme
reading sources... [ 64%] reference/laser_measles
reading sources... [ 73%] reference/laser_measles.generic
reading sources... [ 82%] reference/laser_measles.nigeria
reading sources... [ 91%] reference/modules
reading sources... [100%] usage

looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
copying assets... 
copying static files... 
Writing evaluated template result to /home/runner/work/laser-measles/laser-measles/dist/docs/_static/basic.css
Writing evaluated template result to /home/runner/work/laser-measles/laser-measles/dist/docs/_static/language_data.js
Writing evaluated template result to /home/runner/work/laser-measles/laser-measles/dist/docs/_static/documentation_options.js
Writing evaluated template result to /home/runner/work/laser-measles/laser-measles/dist/docs/_static/js/versions.js
copying static files: done
copying extra files... 
copying extra files: done
copying assets: done
writing output... [  9%] authors
writing output... [ 18%] changelog
writing output... [ 27%] contributing
writing output... [ 36%] index
writing output... [ 45%] installation
writing output... [ 55%] readme
writing output... [ 64%] reference/laser_measles
writing output... [ 73%] reference/laser_measles.generic
writing output... [ 82%] reference/laser_measles.nigeria
writing output... [ 91%] reference/modules
writing output... [100%] usage

generating indices... genindex py-modindex done
highlighting module code... [  7%] laser_measles._core
highlighting module code... [ 13%] laser_measles.antibodies
highlighting module code... [ 20%] laser_measles.births
highlighting module code... [ 27%] laser_measles.generic.metapop
highlighting module code... [ 33%] laser_measles.generic.params
highlighting module code... [ 40%] laser_measles.incubation
highlighting module code... [ 47%] laser_measles.infection
highlighting module code... [ 53%] laser_measles.model
highlighting module code... [ 60%] laser_measles.mortality
highlighting module code... [ 67%] laser_measles.nigeria.metapop
highlighting module code... [ 73%] laser_measles.nigeria.params
highlighting module code... [ 80%] laser_measles.routine
highlighting module code... [ 87%] laser_measles.susceptibility
highlighting module code... [ 93%] laser_measles.transmission
highlighting module code... [100%] laser_measles.utils

writing additional pages... search done
dumping search index in English (code: en)... done
dumping object inventory... done
build succeeded.

The HTML pages are in dist/docs.
docs: exit 0 (13.19 seconds) /home/runner/work/laser-measles/laser-measles> sphinx-build -E -b html docs dist/docs pid=1981
docs: commands[3]> sphinx-build -b linkcheck docs dist/docs
Running Sphinx v8.1.3
loading translations [en]... done
loading pickled environment... The configuration has changed (2 options: 'html_permalinks_icon', 'jquery_use_sri')
done
[autosummary] generating autosummary for: authors.rst, changelog.rst, contributing.rst, index.rst, installation.rst, readme.rst, reference/laser_measles.generic.rst, reference/laser_measles.nigeria.rst, reference/laser_measles.rst, reference/modules.rst, usage.rst
building [mo]: targets for 0 po files that are out of date
writing output... 
building [linkcheck]: targets for 11 source files that are out of date
updating environment: 0 added, 0 changed, 0 removed
reading sources... 
looking for now-outdated files... none found
preparing documents... done
copying assets... 
copying assets: done
writing output... [  9%] authors
writing output... [ 18%] changelog
writing output... [ 27%] contributing
writing output... [ 36%] index
writing output... [ 45%] installation
writing output... [ 55%] readme
writing output... [ 64%] reference/laser_measles
writing output... [ 73%] reference/laser_measles.generic
writing output... [ 82%] reference/laser_measles.nigeria
writing output... [ 91%] reference/modules
writing output... [100%] usage


(          readme: line   13) ok        https://app.codecov.io/github/InstituteforDiseaseModeling/laser-measles
(reference/laser_measles: line   [14](https://github.com/krosenfeld-IDM/laser-measles/actions/runs/11977640624/job/33395969743#step:7:15)) ok        https://click.palletsprojects.com/en/stable/setuptools/
(          readme: line   24) ok        https://codecov.io/gh/InstituteforDiseaseModeling/laser-measles/branch/main/graphs/badge.svg?branch=main
(          readme: line   20) ok        https://github.com/InstituteforDiseaseModeling/laser-measles/actions/workflows/github-actions.yml/badge.svg
(    contributing: line   40) ok        https://github.com/InstituteforDiseaseModeling/laser-measles
(          readme: line   [15](https://github.com/krosenfeld-IDM/laser-measles/actions/runs/11977640624/job/33395969743#step:7:16)) broken    https://github.com/InstituteforDiseaseModeling/laser-measles/compare/v0.6.0...main - 404 Client Error: Not Found for url: https://github.com/InstituteforDiseaseModeling/laser-measles/compare/v0.6.0...main
(    contributing: line   11) ok        https://github.com/InstituteforDiseaseModeling/laser-measles/issues
(          readme: line   40) ok        https://img.shields.io/pypi/implementation/laser-measles.svg
(          readme: line   28) ok        https://img.shields.io/pypi/v/laser-measles.svg
(          readme: line   36) ok        https://img.shields.io/pypi/pyversions/laser-measles.svg
(          readme: line   32) ok        https://img.shields.io/pypi/wheel/laser-measles.svg
(          readme: line   13) ok        https://github.com/InstituteforDiseaseModeling/laser-measles/actions
(          readme: line   15) ok        https://test.pypi.org/project/laser-measles/
(          readme: line   44) ok        https://img.shields.io/github/commits-since/InstituteforDiseaseModeling/laser-measles/v0.6.0.svg
(          readme: line   11) ok        https://laser-measles.readthedocs.io/en/latest/
(          readme: line   [16](https://github.com/krosenfeld-IDM/laser-measles/actions/runs/11977640624/job/33395969743#step:7:17)) ok        https://readthedocs.org/projects/laser-measles/badge/?style=flat
(         authors: line    5) ok        https://www.idmod.org
build finished with problems.
docs: exit 1 (12.65 seconds) /home/runner/work/laser-measles/laser-measles> sphinx-build -b linkcheck docs dist/docs pid=2100
  docs: FAIL code 1 (71.91=setup[28.89]+cmd[0.22,16.95,13.19,12.65] seconds)
  evaluation failed :( (71.99 seconds)
Error: Process completed with exit code 1.
@krosenfeld-IDM krosenfeld-IDM changed the title github actions failing on repository branches github actions failing on repository forks Nov 22, 2024
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