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CHANGELOG.md

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Changelog

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.

Unreleased

v1.1.1 - 2022-10-16

Fixed

  • stato.owl ontology missing from the PyPI source distribution.

v1.1.0 - 2022-10-14

Added

  • Support for Python 3.10.

Changed

  • Updated redistributed PSI-MS file to latest version.
  • Bumped required pronto dependency to v2.0 and up.
  • Use functools.cached_property instead of cached_property.cached_property in recent Python version where it is available.
  • Use importlib.resources instead of pkg-resources for managing the package resources.

Removed

  • Support for Python 2.7.
  • six dependency.

v1.0.4 - 2021-12-14

Fixed

  • Allow higher versions of openpyxl to be installed (#46).

Changed

  • Added support for Python 3.9.

v1.0.3 - 2020-04-01

Fixed

  • Issue with cli not being accessible as expected - see PR (#40).

Changed

  • Added support for Python 3.8.
  • Changed Pyinstaller requirement for >= v3.6 (this is only for making the windows standalone executable and is not part of the standard installation)

v1.0.2 - 2019-10-01

Fixed

  • Issue in ISA Investigation template failing the ISA-API test suite. (#39).

Changed

  • Dropped support for Python 3.4.
  • Added support for Python 3.7.
  • Bumped pronto requirement to 0.12.0.
  • Bumped fs requirement to 2.4.0.

v1.0.1 - 2019-01-06

Changed

  • Added fs version 2.2.0 to supported fs versions.
  • Bumped pronto requirement to 0.11.0

v1.0.0 - 2018-10-16

Added

  • Added GPLv3 license file to source and wheel distribution.
  • Added unit testing framework using Metabolights data from the EBI FTP server.

Changed

  • Changed inner API to use Pyfilesystem2 to access to mzML and imzML files.
  • Made mzml2isa directly output files in the directory passed to the -o flag.
  • Switched to tqdm to display the progress bar.

Fixed

  • Updated imzML investigation template to support multiple assays.
  • Fixed crash case when parsing a ZIP file.
  • Updated local psi-ms.obo with newer version without dead links.
  • Pinned dependencies in setup.cfg.
  • Fixed crash on missing Spectrum representation.