Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

ISA converter - use of default configuration - update needed to cope with new assay definitions #517

Open
5 tasks
proccaserra opened this issue Jan 8, 2024 · 0 comments

Comments

@proccaserra
Copy link
Member

Symptoms:

Conversion from ISA-JSON to ISA-TAB drops unrecognized assays if measurement type and technology types not found in
/resources/config/json/default by the converter

  • strict requirement on measurement type.term and technology type.term value: exact match needed.
  • strict requirement on protocol_type.term value: exact match needed.
  • strict requirement on the sequence of processes and input/output (no support for optional steps, e.g. optional Labeling events during sample processing

TODO:

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
Development

No branches or pull requests

1 participant