pyproject.toml

[tool.poetry]
name = "divbrowse"
version = "1.1.0"
keywords = ["bioinformatics", "genomics", "visualization", "variant call format", "vcf", "biodiversity"]
description = "A web application for interactive visualization and analysis of genotypic variant matrices"
readme = "README.md"
authors = ["Patrick König <koenig@ipk-gatersleben.de>"]
license = "MIT"
include = ["docs/", "divbrowse/static/*", "divbrowse/static/build/*"]
homepage = "https://divbrowse.ipk-gatersleben.de/"
repository = "https://github.com/IPK-BIT/divbrowse"
documentation = "https://divbrowse.readthedocs.io/"

[tool.poetry.dependencies]
python = "^3.9"
click = "^8.0.1"
numpy = "^1.21.1"
pandas = "^1.3.0"
flask = "^2.0.1"
#scikit-learn = "^0.24.2"
scikit-learn = "^1.2.0"
scikit-allel = "^1.3.5"
seaborn = "^0.12.2"
bioblend = "^0.16.0"
pyyaml = "^5.4.1"
zarr = "^2.8.3"
tables = "^3.6.1"
simplejson = "^3.17.3"
orjson = "^3.8.5"
umap-learn = "^0.5.2"
waitress = "2.1.2"
sphinx = {version = "^4.0.2", optional = true}
sphinx-autoapi = {version = "^1.6.0", optional = true}
sphinx_rtd_theme = {version = "^0.5.2", optional = true}
sphinx-click = {version = "^3.0.1", optional = true}

[tool.poetry.dev-dependencies]
sphinx = {version = "^4.0.2"}
sphinx-autoapi = {version = "^1.6.0"}
sphinx_rtd_theme = {version = "^0.5.2"}
sphinx-click = {version = "^3.0.1"}

[tool.poetry.extras]
docs = ["sphinx", "sphinx-autoapi", "sphinx_rtd_theme", "sphinx-click"]

[tool.poetry.scripts]
divbrowse = 'divbrowse.cli:main'

[build-system]
requires = ["poetry-core>=1.0.0"]
build-backend = "poetry.core.masonry.api"